Citrus Sinensis ID: 044609

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPPK
Secondary Structure (PSIPRED)
ccccccEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccEEEEccHHHHHHHHHccccHHHHcccccccEEEEEEccccEEEEEEcccccccccccEEEEEHHHHHHHHHHHcccccEEEccEEEEEEcccccccccEEEEEccccEEEccEEEEcccccHHHHccccccccccccEEEEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcHHHHHHHHHHHHHccccEEEEEccHHHHHccccEEccHHHHHHHHHcccHHHHHHHccccccEEEEccccccEEccccHHHHHHccccEEEEEHHHHHHHHHHHcccccEEEccEEEEEEccccccccEEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccccEEEEEEEEEccccccccccEEEEEcccEEEEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKsdglratgaaltlspNAWLALDALGvshkltsvyapakrvfvtnlgtgatqelsyagksgrigsglrSVHRQSLLEALadelpddtiqfsSKIAaidsqtlngsSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSesinsgrssvrglavfphghglnqDIRQFVGvgfragfiplndrdVYWFLNRYSPPK
Flexible Loop (DISEMBL)
MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGfiplndrdvyWFLNRYSPPK
Low Complexity Region (SEG)
MEMVEEDvviigagiaglatavalRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSllealadelpddTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPPK
Disordered region (IsUnstruct)
******DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGK**RIG**L**V***SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY****
Disordered Region (DISOPRED)
****EED**IIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPP*
Disordered Region (DISEMBL)
MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPPK
Disordered Region (DISPRO)
*****EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.922	0.557	0.262	2e-13
A6T923	384	FAD-dependent urate hydro	yes	no	0.922	0.557	0.262	2e-13
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.706	0.416	0.286	5e-10
Q53552	435	Salicylate hydroxylase OS	no	no	0.646	0.344	0.309	2e-07
B5B0J6	384	FAD-dependent urate hydro	yes	no	0.896	0.541	0.241	3e-06
Q1RLY6	474	Kynurenine 3-monooxygenas	yes	no	0.767	0.375	0.247	4e-06
Q5EXK1	397	3-hydroxybenzoate 6-hydro	no	no	0.620	0.362	0.289	7e-06
P23262	434	Salicylate hydroxylase OS	no	no	0.711	0.380	0.268	2e-05
Q8TQQ6	407	Digeranylgeranylglyceroph	yes	no	0.672	0.383	0.270	2e-05
Q1B5E2	573	3-(3-hydroxy-phenyl)propi	no	no	0.715	0.289	0.265	3e-05

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 9   VIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTS 68
           ++IGAGI GL+ AVAL++ GI   V E    ++  GAA+++ PN    +  LG+   + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69  VYAPAKRVFVTNLGTGATQ-ELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSS 127
              P +R+   +  +G    + S A    R GS    V R  L   + D    D++QF  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 128 KIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSV 185
           ++   +      +    +   D +     +LI  DG HS +  W LG + +   +G  + 
Sbjct: 124 RVTRCEED----ADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNW 179

Query: 186 RGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
            GL               FVG G R   +P++    Y+F +
Sbjct: 180 NGLVEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFD 220

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae (taxid: 573)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 9   VIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTS 68
           ++IGAGI GL+ AVAL++ GI   V E    ++  GAA+++ PN    +  LG+   + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69  VYAPAKRVFVTNLGTGATQ-ELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSS 127
              P +R+   +  +G    + S A    R GS    V R  L   + D    D++QF  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 128 KIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSV 185
           ++   +      +    +   D +     +LI  DG HS +  W LG + +   +G  + 
Sbjct: 124 RVTRCEED----ADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNW 179

Query: 186 RGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
            GL               FVG G R   +P++    Y+F +
Sbjct: 180 NGLVEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFFD 220

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 4   VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVS 63
           +  +++I GAGI GL+ A+ L R G++++VLEK+  L   GA + L+PNA+ ALDALG+ 
Sbjct: 1   MHNNILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIG 60

Query: 64  H--KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGR-IGSGLRSVHRQSLLEALADELPD 120
              + T V+   K +++  +       +  A +     G+    +HR      L +    
Sbjct: 61  EVARQTGVHVD-KLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHK 119

Query: 121 D-TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQ 170
              ++  +    +D +       AI++  D + I   VL+G DG+ S V Q
Sbjct: 120 TGLVEVRTNAEVVDYENFPDRVEAILH--DGSCINGAVLVGADGLWSNVRQ 168

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|Q53552|NHG2_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=4 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 8   VVIIGAGIAGLATAVAL-RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           V I+G GI+GLA A++L +   +   + E +      GA ++  PNA  A+  LG+    
Sbjct: 13  VAIVGGGISGLALALSLCKHSHLNVQLFEAAPAFGEVGAGVSFGPNAVRAIVGLGLGQAY 72

Query: 67  TSVY----APAKRV-FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDD 121
             V      P + + F    G+ A    SY G +   G G  SVHR   L+AL   LP+ 
Sbjct: 73  FQVADRTPQPWEDIWFEWRRGSDA----SYLGAT-IAGVGQSSVHRADFLDALVKHLPEG 127

Query: 122 TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166
             QF  +   I+ Q   G    ++   D T  +  +LIG DG+ S
Sbjct: 128 IAQFRKRATQIEQQ---GDELQVL-FRDGTEYRCDLLIGRDGIKS 168

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 7/215 (3%)

Query: 15  IAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK 74
           I GL+ AV L+  GI   V E    ++  GAA+++ PN    +  LG+   + S   P  
Sbjct: 10  IGGLSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIESYGGPMH 69

Query: 75  RVFVTNLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAID 133
            +   +   G    + S A    R G     V   +L   + D    D +QF  ++   +
Sbjct: 70  FLAYKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREMLDFWGRDAVQFGKRVTRCE 129

Query: 134 SQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSVRGLAVF 191
                 +    +   D ++ +   LI  DG HS +  + LG + E   +G  +  GL   
Sbjct: 130 EH----ADGVRVWFTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGLVEI 185

Query: 192 PHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
                       FVG G R   +P++D   Y+F +
Sbjct: 186 DEAIAPGNQWTTFVGEGKRVSLMPVSDGRFYFFFD 220

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q1RLY6|KMO_DANRE Kynurenine 3-monooxygenase OS=Danio rerio GN=kmo PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 16/194 (8%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA------LTLSPNAWLALDALG 61
           + ++G G+ G   A  L + G    V E  + +R           L LS     AL  +G
Sbjct: 19  IAVVGGGLVGSLNACFLAKRGFDVEVYESREDIRQAKVVKGRSINLALSHRGRQALKHVG 78

Query: 62  VSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDD 121
           +  K+ S   P     + N+  G    + Y  K   I S  R+   + LL A A+  P+ 
Sbjct: 79  MEDKIISKGIPMHARMIHNVN-GKRSPIPYGKKGQYILSVDRANLNKELLTA-AEAYPNT 136

Query: 122 TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSG 181
            + F+ K+     +T  G+   I + G  T  +A +++GCDG  S V +        N  
Sbjct: 137 RLNFNHKLHDWSPKT--GTMTFIGSDGQKTETQADLIVGCDGAFSAVRKQFLRQSRFNYS 194

Query: 182 RSSVRGLAVFPHGH 195
           ++ +      PHG+
Sbjct: 195 QTYI------PHGY 202

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 20  TAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVF-- 77
           TA++L R GIK ++LEK+  +   GA + L PNA+ ALD+LGV        A  + VF  
Sbjct: 19  TALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGVGE-----VARQRAVFTD 73

Query: 78  -VTNLGTGATQELSY--AGKSGR--IGSGLRSVHRQSLLEALAD-ELPDDTIQFSSKIAA 131
            +T +     +E+ +   G++ R   G     +HR  +   + +  L    +++ +    
Sbjct: 74  HITMMDAVNGEEVVHIETGQAFRDHFGGPYAVIHRVDIHATVWEAALTHPAVEYRTSTQV 133

Query: 132 IDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQ 170
           +D +          + G+S    A +LIGCDG  S+V Q
Sbjct: 134 VDIRQTADDVTVFDDKGNSWT--ADILIGCDGGKSVVRQ 170

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|P23262|NHG1_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=1 SV=4

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%)

Query: 29  IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV----YAPAKRV-FVTNLGT 83
           I+  + E +      GA ++  PNA  A+  LG+      V      P + V F    G+
Sbjct: 32  IQVQLFEAAPAFGEVGAGVSFGPNAVRAIVGLGLGEAYLQVADRTSEPWEDVWFEWRRGS 91

Query: 84  GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAA 143
            A    SY G +   G G  SVHR   ++AL   LP+   QF  +   ++ Q   G    
Sbjct: 92  DA----SYLGATIAPGVGQSSVHRADFIDALVTHLPEGIAQFGKRATQVEQQ---GGEVQ 144

Query: 144 IINLGDSTIIKAKVLIGCDGV----HSMVAQWLGLSESIN--SGRSSVRGLAVFPH---- 193
           ++   D T  +  +LIG DG+     S V +  GL+  +   SG  + RG+    H    
Sbjct: 145 VL-FTDGTEYRCDLLIGADGIKSALRSHVLEGQGLAPQVPRFSGTCAYRGMVDSLHLREA 203

Query: 194 --GHGLNQDI 201
              HG+++ +
Sbjct: 204 YRAHGIDEHL 213

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|Q8TQQ6|GGR_METAC Digeranylgeranylglycerophospholipid reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_1484 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKS----DGLR-ATGAALTLSP------NAWL 55
           DV++IGAG AG   A      G+  L++EK     D +R A G             N+W+
Sbjct: 6   DVLVIGAGPAGSIAAKTAAEKGLDVLLIEKRQEIGDPVRCAEGVNKEYLKKHVEIDNSWI 65

Query: 56  ALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGL-RSVHRQSLLEAL 114
             D  G     + +Y+P           G   E++     G +G  L R +  ++L E  
Sbjct: 66  CADLKG-----SRIYSP----------NGTKVEMAEEISGGEVGYVLERKIFDRALAEHA 110

Query: 115 ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL 174
           A    +  ++  +    I+   + G  A ++NLG    ++AK++IG DGV S V +W G+
Sbjct: 111 AKAGAEVRVKTRATGLIIEDDFVKG--ARLMNLGKEYEVRAKIVIGADGVESKVGRWAGI 168

Query: 175 SESIN 179
             S+ 
Sbjct: 169 DTSLK 173

Is involved in the reduction of 2,3-digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q1B5E2|MHPA_MYCSS 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Mycobacterium sp. (strain MCS) GN=mhpA PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 15/181 (8%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALG 61
           +  + DVVI+GAG  GL  A  L   G++ +++E+   L      + L   A     A+G
Sbjct: 13  DATDTDVVIVGAGPVGLTLANILGLQGVRTMIVEERATLIDYPRGVGLDDEALRTFQAIG 72

Query: 62  VSHKLTSVYAPAK--RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEA-----L 114
           +  K+     P +  R F  N    A      A    R G   R+   Q +++A     L
Sbjct: 73  LVDKVLPHTVPNQILRFFDGNRRLLA----EMAPPDARFGWPKRNGFVQPMVDAELHAGL 128

Query: 115 ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL 174
           A   P   +++  ++A  + +T +G +  +   GD T ++A+ L+GCDG  S   + +G+
Sbjct: 129 A-RFPHVEVRWGHRMAECE-ETADGVTVRLD--GDPTPVRARYLVGCDGGRSATRRLMGV 184

Query: 175 S 175
           S
Sbjct: 185 S 185

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Mycobacterium sp. (strain MCS) (taxid: 164756)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255578424	462	monoxygenase, putative [Ricinus communis	0.952	0.478	0.663	3e-79
255578420	408	monoxygenase, putative [Ricinus communis	0.931	0.529	0.669	6e-79
224126917	417	predicted protein [Populus trichocarpa]	0.969	0.539	0.643	1e-72
224105743	414	predicted protein [Populus trichocarpa]	0.952	0.533	0.644	6e-72
359477074	413	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.961	0.539	0.612	1e-70
296088642	356	unnamed protein product [Vitis vinifera]	0.952	0.620	0.597	3e-70
359477076	408	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.952	0.541	0.597	1e-69
224056051	404	predicted protein [Populus trichocarpa]	0.931	0.534	0.635	2e-69
225431405	411	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.961	0.542	0.592	2e-69
255578418	412	monoxygenase, putative [Ricinus communis	0.952	0.536	0.615	2e-66

>gi|255578424|ref|XP_002530077.1| monoxygenase, putative [Ricinus communis] gi|223530430|gb|EEF32317.1| monoxygenase, putative [Ricinus communis]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/226 (66%), Positives = 184/226 (81%), Gaps = 5/226 (2%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
           MEMV+ D VI+GAGIAGLATAVAL+R+GI+AL+LE+SDGLRATG+ALTL PNAWLALDAL
Sbjct: 52  MEMVQ-DAVIVGAGIAGLATAVALKRVGIQALILERSDGLRATGSALTLFPNAWLALDAL 110

Query: 61  GVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPD 120
           GVSH LTS Y+ A R  VTN+ TGA QE+S+ G +G    G +SVHR++LLEAL  ELP 
Sbjct: 111 GVSHMLTSFYSSALRGSVTNVATGAVQEISFVGNNG----GPKSVHRKALLEALVQELPA 166

Query: 121 DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINS 180
           D+++FSSK  AI+     G+S  +++L D T +K+KVLIGCDGVHS+VAQWLGLS   +S
Sbjct: 167 DSVRFSSKFTAIEMVEQGGTSIPVVHLEDGTTVKSKVLIGCDGVHSVVAQWLGLSAPFHS 226

Query: 181 GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           GRSSVRGL+VFP GHGL Q I+QFV VG RAGF+PLND+++YWFL 
Sbjct: 227 GRSSVRGLSVFPQGHGLEQAIKQFVDVGKRAGFVPLNDKEIYWFLT 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578420|ref|XP_002530075.1| monoxygenase, putative [Ricinus communis] gi|223530428|gb|EEF32315.1| monoxygenase, putative [Ricinus communis]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 148/221 (66%), Positives = 181/221 (81%), Gaps = 5/221 (2%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           ED VI+GAGIAGLATAVAL+R+GI+ALVLE+SD LR TGAALTL PNAWLALDALGVSHK
Sbjct: 2   EDAVIVGAGIAGLATAVALKRVGIRALVLERSDTLRTTGAALTLFPNAWLALDALGVSHK 61

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
           LTS+Y+P     VT + TGA QE+S+A          RSVHR++LLEALA ELP D+++F
Sbjct: 62  LTSLYSPISGGSVTKVDTGAVQEISFAANIEP-----RSVHRRALLEALAQELPPDSVKF 116

Query: 126 SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSV 185
           S+KI  ID Q  NG+S+A++ L D T IK+KVLIGCDGVHS+VA+WLGLSE I+SGRS+V
Sbjct: 117 SAKITTIDVQEQNGASSAVVCLEDGTTIKSKVLIGCDGVHSVVAKWLGLSEPIHSGRSAV 176

Query: 186 RGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           RGLAV+P GHG  Q++ QFV VG RAGF+PLND+++YWFL+
Sbjct: 177 RGLAVYPQGHGFKQEVNQFVDVGKRAGFVPLNDKELYWFLS 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126917|ref|XP_002329505.1| predicted protein [Populus trichocarpa] gi|222870185|gb|EEF07316.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 188/227 (82%), Gaps = 2/227 (0%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
           MEM+E DVVI+GAGIAGLATAVAL+R+G++ALVLE+S+GLRATGAALTL PNAW ALDAL
Sbjct: 1   MEMME-DVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWPALDAL 59

Query: 61  GVSHKLTSVYAPAKRVFVTNLGTGATQELSY-AGKSGRIGSGLRSVHRQSLLEALADELP 119
           GVSHKLT +YA     +VTN+  G  Q++ +    +G  G G+R++HR++LLEALA+ELP
Sbjct: 60  GVSHKLTPIYALTSMGYVTNVSAGDVQQVLFRVANNGGDGHGIRTIHRKALLEALAEELP 119

Query: 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN 179
            D+IQFSSK+A I+++   G+S  +I+L D T IK+KVLIGCDGV+S+VA+WLGL+E ++
Sbjct: 120 VDSIQFSSKLAVIENEEQGGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVH 179

Query: 180 SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           SGRS+VRGLAVFP GHG  Q++ QFV VG RAGF+PLNDR++YWFL 
Sbjct: 180 SGRSAVRGLAVFPQGHGFKQEVHQFVDVGKRAGFVPLNDRELYWFLT 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105743|ref|XP_002333773.1| predicted protein [Populus trichocarpa] gi|222838457|gb|EEE76822.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 185/222 (83%), Gaps = 1/222 (0%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           EDVVI+GAGIAGLATAVAL+R+G++ALVLE+S+GLRATGAALTL PNAWLALDALGVSHK
Sbjct: 2   EDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWLALDALGVSHK 61

Query: 66  LTSVYAPAKRVFVTNLGTGATQEL-SYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQ 124
           LT +YAP    +VTN+  G  Q++ +    +G    G+R++HR++LLEALA+ELP D+IQ
Sbjct: 62  LTPIYAPTSMGYVTNVSAGDVQQVHARVANNGGDVQGIRTLHRKALLEALAEELPVDSIQ 121

Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSS 184
           FSSK+A I+++   G+S  +I+L D T IK+KVLIGCDGV+S+VA+WLGL+E ++SGRS+
Sbjct: 122 FSSKLAVIENEEQGGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVHSGRSA 181

Query: 185 VRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           VRGLAVFP GHG  Q++ +FV VG RAGF+PLNDR++YWFL 
Sbjct: 182 VRGLAVFPQGHGFKQEVHRFVDVGKRAGFVPLNDRELYWFLT 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477074|ref|XP_002272352.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera] gi|296088638|emb|CBI37629.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/227 (61%), Positives = 181/227 (79%), Gaps = 4/227 (1%)

Query: 1   MEMV-EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDA 59
           ME + EE+VVI+GAGIAGLATAVAL+R+GI+ALVLE+SD LRATGAALTL PNAW ALDA
Sbjct: 1   MERIAEEEVVIVGAGIAGLATAVALKRVGIRALVLERSDCLRATGAALTLFPNAWRALDA 60

Query: 60  LGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP 119
           LGVSHKLT +YA  ++ +VTN+ TGA QE+S + ++ R   G  +VHR++LLE+LA+ELP
Sbjct: 61  LGVSHKLTPLYAVREKSYVTNVTTGAIQEVSLS-RNNR--GGPITVHRKALLESLAEELP 117

Query: 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN 179
            ++I+FSSK+ + + +        II L D T+I AKVLIGCDGVHS+VA+ LGL+E +N
Sbjct: 118 SNSIRFSSKLISFEVEAQAEEGLYIIRLEDGTVITAKVLIGCDGVHSLVARKLGLAEPVN 177

Query: 180 SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           SGRS+VRGLAVF  GHGL  +++QF+ V  RAG +PLND+++YWFL 
Sbjct: 178 SGRSAVRGLAVFQEGHGLGDEVQQFLDVNIRAGMVPLNDKEIYWFLT 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088642|emb|CBI37633.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 178/226 (78%), Gaps = 5/226 (2%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH 64
           EE++VI+G GIAGLATAVAL+R+GI+ALVLE+SDGLRATGAAL L PNAW ALDALGV+H
Sbjct: 25  EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 84

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQ 124
           KLT+VYA  K+ +VT++ TGA QE+S  G +     G  +VHR++LLE+LA+ELP ++I+
Sbjct: 85  KLTAVYAVRKKAYVTDVATGAVQEVSLMGNN---SDGPITVHRKALLESLAEELPRNSIR 141

Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSS 184
           FSSK  +I++Q   G  A  I L D T+I  KVLIGCDGV+S VA+ LGL++ +NSGRS+
Sbjct: 142 FSSKPISIEAQGQEGPYA--IRLEDGTVITTKVLIGCDGVNSFVARKLGLTQPVNSGRSA 199

Query: 185 VRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230
           +  LAVFP GHG+ +D++QFV VG R G +PLND+++YWFL   +P
Sbjct: 200 LVALAVFPEGHGVREDVQQFVDVGKRGGIVPLNDKEIYWFLTFNTP 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477076|ref|XP_002272571.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase-like [Vitis vinifera]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 178/226 (78%), Gaps = 5/226 (2%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH 64
           EE++VI+G GIAGLATAVAL+R+GI+ALVLE+SDGLRATGAAL L PNAW ALDALGV+H
Sbjct: 4   EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 63

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQ 124
           KLT+VYA  K+ +VT++ TGA QE+S  G +     G  +VHR++LLE+LA+ELP ++I+
Sbjct: 64  KLTAVYAVRKKAYVTDVATGAVQEVSLMGNN---SDGPITVHRKALLESLAEELPRNSIR 120

Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSS 184
           FSSK  +I++Q   G  A  I L D T+I  KVLIGCDGV+S VA+ LGL++ +NSGRS+
Sbjct: 121 FSSKPISIEAQGQEGPYA--IRLEDGTVITTKVLIGCDGVNSFVARKLGLTQPVNSGRSA 178

Query: 185 VRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230
           +  LAVFP GHG+ +D++QFV VG R G +PLND+++YWFL   +P
Sbjct: 179 LVALAVFPEGHGVREDVQQFVDVGKRGGIVPLNDKEIYWFLTFNTP 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056051|ref|XP_002298720.1| predicted protein [Populus trichocarpa] gi|222845978|gb|EEE83525.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 183/222 (82%), Gaps = 6/222 (2%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           EDVVI+GAGIAGLATAVAL+R+G++ALVLE+S GLR+TGAA++L PNAWLALDALGVSHK
Sbjct: 3   EDVVIVGAGIAGLATAVALKRVGVRALVLERSQGLRSTGAAISLFPNAWLALDALGVSHK 62

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
           LT +Y P  +V VTN+ TG  Q++ +       G G R+VHR++LLEALA+EL  D+I+F
Sbjct: 63  LTRIYDPLFKVHVTNVSTGDVQQVLFPA-----GHGPRAVHRKALLEALAEELLADSIRF 117

Query: 126 SSKIAAIDSQTLNG-SSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSS 184
           SSK+AAI+S+   G +S A+++L D TIIK+KVLIGCDG+HS+VA+WLGL+E ++SGRS+
Sbjct: 118 SSKLAAIESEEQGGGASIAVVHLEDGTIIKSKVLIGCDGLHSIVARWLGLAEPVHSGRSA 177

Query: 185 VRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           VRGLA+FP G+G  Q+ +QFV  G RAGF+PLNDR+ YWFL 
Sbjct: 178 VRGLAIFPQGYGFKQEAQQFVDEGKRAGFVPLNDREFYWFLT 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431405|ref|XP_002272608.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1 [Vitis vinifera] gi|296088643|emb|CBI37634.3| unnamed protein product [Vitis vinifera]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/228 (59%), Positives = 180/228 (78%), Gaps = 5/228 (2%)

Query: 3   MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGV 62
           ++EE++VI+GAGIAGLATA+AL+R+GI+ALVLE+SDGLR +GAALTL+PNAWLALDALGV
Sbjct: 5   VLEEEIVIVGAGIAGLATAIALKRVGIRALVLERSDGLRVSGAALTLAPNAWLALDALGV 64

Query: 63  SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDT 122
           +HKLT +YA  +++ +TN+ TGA QE+S   ++ R   G  +VHR++LLE+LA+ELP  +
Sbjct: 65  AHKLTPLYAVREKMCITNVATGAVQEVSLI-RNNR--GGPITVHRKALLESLAEELPRHS 121

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGR 182
           I+FSSK  +I++Q   G     I L D T+I  KVLIGCDGV+S VA+ LGL+E +NSGR
Sbjct: 122 IRFSSKPISIEAQAQEGPYT--IRLEDGTVITTKVLIGCDGVNSFVARKLGLTEPVNSGR 179

Query: 183 SSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP 230
           SSV  LAVFP GHG+ + + QF+ VG RAG +PLND+D+YWFL   +P
Sbjct: 180 SSVVALAVFPEGHGVREHVLQFLDVGKRAGIVPLNDKDIYWFLTFNTP 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578418|ref|XP_002530074.1| monoxygenase, putative [Ricinus communis] gi|223530427|gb|EEF32314.1| monoxygenase, putative [Ricinus communis]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 178/226 (78%), Gaps = 5/226 (2%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
           ME++E  VVI+G GIAG+ATAVAL+R+G++ALVLEKSDGLRATGA LTL PNAWLALDAL
Sbjct: 1   MEIME-GVVIVGGGIAGVATAVALKRVGVRALVLEKSDGLRATGAGLTLMPNAWLALDAL 59

Query: 61  GVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPD 120
           GVSHKL  +Y+      +TN+  GA QE+++    G    G R+VHR++LLEALA+ELP 
Sbjct: 60  GVSHKLIPLYSSPLVGSITNVSNGAVQEVAFPVNEG----GPRTVHRKALLEALAEELPA 115

Query: 121 DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINS 180
           D+I+FS+K  +I+ Q   G S  +++L D T IK+KVLIGCDGVHS VA+WLGLS  I+S
Sbjct: 116 DSIRFSAKFTSIEMQEQGGVSIPVLHLEDGTTIKSKVLIGCDGVHSAVARWLGLSAPIHS 175

Query: 181 GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN 226
           GRS+VRGLAV+P GHG  Q+++QFV VG RAG IPLND+++YW L+
Sbjct: 176 GRSAVRGLAVYPQGHGFKQEMKQFVDVGIRAGLIPLNDKELYWGLS 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.853	0.486	0.406	8.5e-33
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.853	0.487	0.392	1.8e-30
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.857	0.466	0.373	1.6e-29
TAIR|locus:2058723	439	CTF2A "AT2G35660" [Arabidopsis	0.857	0.453	0.359	5.6e-29
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.814	0.447	0.333	1.6e-21
TAIR|locus:504955430	271	AT4G15765 "AT4G15765" [Arabido	0.297	0.254	0.347	6.7e-10
TIGR_CMR|SPO_3692	395	SPO_3692 "monooxygenase, putat	0.698	0.410	0.295	0.00012
UNIPROTKB|A6T923	384	hpxO "FAD-dependent urate hydr	0.853	0.515	0.214	0.0002
UNIPROTKB|B6D1N4	384	hpxO "FAD-dependent urate hydr	0.853	0.515	0.214	0.0002
TIGR_CMR|SPO_2510	388	SPO_2510 "salicylate hydroxyla	0.775	0.463	0.227	0.00027

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 83/204 (40%), Positives = 113/204 (55%)

Query:    26 RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85
             RLGI+++VLE S+ LRATG A T   NAW A++ALGVS  + S++   +   V  +  G 
Sbjct:    27 RLGIRSMVLESSETLRATGFAFTTWFNAWKAMEALGVSQHIRSLHDRLEGWVVGTISAGT 86

Query:    86 TQELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAAII 145
                     +S    S  R V R+             TI+FSSK+  I+   L+G    + 
Sbjct:    87 PPTEMLFPESEEYES--RCVQRKLLLEALAGELPEETIRFSSKVVHIE---LSGCYKKV- 140

Query:   146 NLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFV 205
             +L D TI+K KVL+GCDGV+S+V +WLG      + R ++RGL  FP GHG  +   QF 
Sbjct:   141 HLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPATTARLAIRGLTHFPEGHGFGKRFFQFY 200

Query:   206 GVGFRAGFIPLNDRDVYWFLNRYS 229
             G G R+GFIP +   VYWFL   S
Sbjct:   201 GDGVRSGFIPCDHNTVYWFLTHTS 224

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 80/204 (39%), Positives = 115/204 (56%)

Query:    26 RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85
             RLGI+++VLE S+ LRATG AL+L  NAW A++ALG+S  + S+    +   V  +  G 
Sbjct:    27 RLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGISQHIRSLGDRFQGWVVRPISAGD 86

Query:    86 TQELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAAII 145
               +     +S      +R V R+             TI+FSSK+  I+   L+G    ++
Sbjct:    87 PPKEMLFPESEEYE--VRCVQRKLLLDALAGELPQGTIRFSSKLVHIE---LSGHYK-MV 140

Query:   146 NLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFV 205
             +L D TI+K KVL+GCDGV S+V +WLG    + + R ++RG+A F  GH L +   QF 
Sbjct:   141 HLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRVAIRGIAHFQTGHELGRRFFQFY 200

Query:   206 GVGFRAGFIPLNDRDVYWFLNRYS 229
             G G R+GFI  +   VYWFL   S
Sbjct:   201 GNGVRSGFISCDQNTVYWFLTHTS 224

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 77/206 (37%), Positives = 111/206 (53%)

Query:    26 RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85
             RLGI+++VLE+++ LR  GA+LTLS N W  LDA+ +  +L   +   + V V     G 
Sbjct:    63 RLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAISIGPQLRKQFLEMQGV-VLKKEDG- 120

Query:    86 TQEL-SYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAAI 144
              +EL S+  K       +R V R+             TI+FSSK+ +I S   NG +  +
Sbjct:   121 -RELRSFKFKDNDQSQEVRGVERRVLLETLASQLPPQTIRFSSKLESIQSNA-NGDT--L 176

Query:   145 INLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQF 204
             + L D T   A ++IGCDG+ S VA W+G SE    G  + RGL  FP+G    Q +   
Sbjct:   177 LQLKDGTRFLANIVIGCDGIRSKVATWMGFSEPKYVGYCAFRGLGFFPNGQPFQQKVNYI 236

Query:   205 VGVGFRAGFIPLNDRDVYWFLNRYSP 230
              G G RAG++P++   VYWF+   SP
Sbjct:   237 FGRGLRAGYVPVSATKVYWFITFNSP 262

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 74/206 (35%), Positives = 114/206 (55%)

Query:    26 RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA 85
             RLGI+++VLE+++ LR  G +LTL  N W  LDA+ V  +L + +   + + V     G 
Sbjct:    65 RLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKK-EDG- 122

Query:    86 TQEL-SYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAAI 144
              +EL S+  K       +R+V R+             TI+FSSK+ +I S   NG +  +
Sbjct:   123 -RELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNA-NGDT--L 178

Query:   145 INLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQF 204
             + LGD T + A+++IGCDG+ S VA W+G SE    G  + RGL  +P+G    + +   
Sbjct:   179 LQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYI 238

Query:   205 VGVGFRAGFIPLNDRDVYWFLNRYSP 230
              G G RAG++P++   VYWF+   SP
Sbjct:   239 YGKGIRAGYVPVSTTKVYWFICFNSP 264

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 68/204 (33%), Positives = 105/204 (51%)

Query:    26 RLGIKALVLEKSDGLRATGAAL-TLSPNAWLALDALGVSHKL---TSVYAPAKRVFVTNL 81
             R GIK++VLE+++ +R+ GA + TLS N W ALD LGV  +L   +S+   A+ + + N 
Sbjct:    49 RKGIKSVVLERAEKVRSEGAGIGTLS-NGWRALDQLGVGDRLRLNSSLIHKARTMLIEN- 106

Query:    82 GTGATQELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSS 141
               G  +E         I    R + R              TI+F S I +I+      + 
Sbjct:   107 --GKKREFV-----SNIVDEARCIKRNDLVEALSDALPKGTIRFGSHIVSIEQDKT--TL 157

Query:   142 AAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDI 201
               +++L +   IKAKVLIGCDG +S+V+ +L L+        +VRG   +P+GHG  Q++
Sbjct:   158 FPVVHLANGNSIKAKVLIGCDGANSIVSDYLQLNPKKAFACRAVRGFTKYPNGHGFPQEV 217

Query:   202 RQFVGVGFRAGFIPLNDRDVYWFL 225
              +        G +PL D  V+WFL
Sbjct:   218 LRIKQGNVLIGRLPLTDNQVFWFL 241

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:504955430 AT4G15765 "AT4G15765" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 24/69 (34%), Positives = 43/69 (62%)

Query:   157 VLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPL 216
             VLIGCDG +S+V+++LGL+ + + G  ++RG   +P  HG  Q+  +       +G +P+
Sbjct:   113 VLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPI 172

Query:   217 NDRDVYWFL 225
               + V+WF+
Sbjct:   173 THKLVFWFV 181

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|SPO_3692 SPO_3692 "monooxygenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 49/166 (29%), Positives = 69/166 (41%)

Query:    26 RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH--KLTSVYAPAKRVFVTNLGT 83
             R G + LVLEK+  L   GA + L PNA+ A D LGV    +  +VY    R+     G 
Sbjct:    24 RQGRRVLVLEKAAQLGEIGAGIQLGPNAFHAFDYLGVGDAARALAVYIDNLRLMDAITGV 83

Query:    84 GATQELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
               T+         R+G+    VHR               +      +A+     +G+SA 
Sbjct:    84 EITRIPLDDPFRARMGNPYAVVHRGDLHGVFLRACQDSPLVELRTSSAVVGYEQDGTSAT 143

Query:   144 IINLGDSTIIKAKVLIGCDGVHSMV-AQWLGLSESINSGRSSVRGL 188
              + L D T      LIG DG+ S V AQ L       SG ++ R +
Sbjct:   144 AL-LQDGTRETGAALIGADGLWSKVRAQMLDDGPPRVSGHTTYRSV 188

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)]

 Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 44/205 (21%), Positives = 78/205 (38%)

Query:    25 RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
             ++ GI   V E    ++  GAA+++ PN    +  LG+   + +   P +R+   +  +G
Sbjct:    20 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 79

Query:    85 ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
                 + S A    R GS    V R              ++QF  ++   +      +   
Sbjct:    80 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEED----ADGV 135

Query:   144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLSESIN-SGRSSVRGLAVFPHGHGLNQDI 201
              +   D +     +LI  DG HS +  W LG +     +G  +  GL             
Sbjct:   136 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 195

Query:   202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
               FVG G R   +P++    Y+F +
Sbjct:   196 TTFVGEGKRVSLMPVSAGRFYFFFD 220

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IDA

GO:0019628 "urate catabolic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)]

 Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 44/205 (21%), Positives = 78/205 (38%)

Query:    25 RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
             ++ GI   V E    ++  GAA+++ PN    +  LG+   + +   P +R+   +  +G
Sbjct:    20 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 79

Query:    85 ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
                 + S A    R GS    V R              ++QF  ++   +      +   
Sbjct:    80 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEED----ADGV 135

Query:   144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLSESIN-SGRSSVRGLAVFPHGHGLNQDI 201
              +   D +     +LI  DG HS +  W LG +     +G  +  GL             
Sbjct:   136 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 195

Query:   202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
               FVG G R   +P++    Y+F +
Sbjct:   196 TTFVGEGKRVSLMPVSAGRFYFFFD 220

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

TIGR_CMR|SPO_2510 SPO_2510 "salicylate hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
 Identities = 44/193 (22%), Positives = 79/193 (40%)

Query:    28 GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT-GAT 86
             G    VLE++D +   GA + +SPN    L ALG+     ++    + V +++    G  
Sbjct:    26 GADVTVLEQADAIAEVGAGIQVSPNGAAVLGALGLGPAFEAISVRGRAVVLSDYRRPGEV 85

Query:    87 QELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXX--TIQFSSKIAAIDSQTLNGSSAAI 144
               L     +G        VHR                 ++   K+  +D       S  +
Sbjct:    86 LRLDLMRHAG--DQRYAFVHRADLIDLLAGAVRRAGVNVRLLQKVDRVDP-----GSPPV 138

Query:   145 INLGDSTIIKAKVLIGCDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHGLNQDIRQ 203
             +++ +   + A +++G DG+HS     L G ++   +G+ + R  A  P+  GL  + R 
Sbjct:   139 LHMCNGAHLTADLVVGADGLHSRARAALNGAAKPFFTGQIAWR--ATVPNTVGLPDEARV 196

Query:   204 FVGVGFRAGFIPL 216
             F+G G      PL
Sbjct:   197 FMGPGRHLVCYPL 209

GO:0018658 "salicylate 1-monooxygenase activity" evidence=ISS

GO:0018931 "naphthalene metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-28
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	9e-22
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	1e-21
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	4e-20
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	1e-14
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	4e-14
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-13
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	3e-12
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	6e-12
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	2e-11
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	2e-10
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	4e-09
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	2e-08
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-07
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	3e-07
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	4e-07
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	5e-07
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	1e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-06
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	2e-06
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	4e-06
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	4e-06
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	4e-06
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	4e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	6e-06
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	7e-06
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	8e-06
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	8e-06
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	1e-05
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	1e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-05
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	1e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-05
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	2e-05
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	3e-05
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	4e-05
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	5e-05
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	5e-05
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	6e-05
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	7e-05
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	8e-05
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	1e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	1e-04
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	1e-04
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	1e-04
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	2e-04
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	2e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	2e-04
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	2e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-04
PRK06069	577	PRK06069, sdhA, succinate dehydrogenase flavoprote	3e-04
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	3e-04
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	3e-04
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	4e-04
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	4e-04
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	5e-04
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	5e-04
PRK08274	466	PRK08274, PRK08274, tricarballylate dehydrogenase;	6e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	6e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	7e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	7e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	9e-04
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	0.001
PRK08013	400	PRK08013, PRK08013, oxidoreductase; Provisional	0.001
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	0.001
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	0.001
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	0.001
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.001
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	0.001
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	0.001
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	0.002
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	0.002
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	0.002
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.002
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	0.003
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	0.003
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	0.003
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.003
pfam01946	229	pfam01946, Thi4, Thi4 family	0.003
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	0.004
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	0.004
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.004
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.004
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	0.004

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  108 bits (272), Expect = 8e-28
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHK 65
           DV I+GAG AGLA A+AL R G+   +LE++   L   G  + LSPNA  AL+ LG+  +
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEAL---ADELPDDT 122
           L ++  P   V V + G         A      G+    V R  LL AL   A  LP+ T
Sbjct: 64  LEALGVPPLHVMVVDDGGRRLLIFDAAELGR--GALGYVVPRSDLLNALLEAARALPNVT 121

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQ--WLGLSESINS 180
           ++F +++ A++    +G    +    D   + A +L+G DG +S V +   +      + 
Sbjct: 122 LRFGAEVEAVE---QDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDY 178

Query: 181 GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF 224
           G++++         H      R      F    +PL D      
Sbjct: 179 GQTALVANVEPEEPHEGRAGERFTHAGPF--ALLPLPDNRSSVV 220

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 91.7 bits (228), Expect = 9e-22
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT 67
           + IIGAGI GL  A  L+  G +  V EK++ ++  GA + +  N    +  LG  H L 
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDN---VIKKLGN-HDLA 58

Query: 68  SVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLR--------SVHRQSLLEALADELP 119
                A ++            ++     G + + ++        ++HRQ+L++ +   + 
Sbjct: 59  KGIKNAGQILS---------TMNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK 109

Query: 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN 179
           +D I    ++  I+    N +    I+  D       + IG DG+HS V Q +     + 
Sbjct: 110 EDAIFTGKEVTKIE----NETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVR 165

Query: 180 -SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225
             G +  RGL +      L    +++ G   R G +PL +   YWF+
Sbjct: 166 YQGYTCFRGL-IDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFI 211

Length = 373

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
            V+I G GI GL  A+ L + GI+ +V E +  LR  G  + L P+A   L  LG+   L
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSG-RIGSGLR-----------SVHR----QSL 110
            ++                T+EL+Y  + G RI S  R           S+HR      L
Sbjct: 62  DAIGIR-------------TRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLL 108

Query: 111 LEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI--IKAKVLIGCDGVHSMV 168
           L+A+ + L  D ++   ++   + Q  + +   + +     +  ++  VLIG DG+HS V
Sbjct: 109 LDAVRERLGPDAVRTGHRVVGFE-QDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167

Length = 413

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 87.4 bits (217), Expect = 4e-20
 Identities = 60/177 (33%), Positives = 83/177 (46%), Gaps = 27/177 (15%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT 67
           V+I+G GI GLA A+AL R GIK  +LE++  +   GA + L PNA+ ALDALGV     
Sbjct: 7   VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA-- 64

Query: 68  SVYAPAKRVFVTNLGTGATQELSYAGKSGRI--GSGLRS--------VHR----QSLLEA 113
              A  + VF  +L      +   A +  RI  G   R+        +HR     SLLEA
Sbjct: 65  ---ARQRAVFTDHLTMMDAVD---AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEA 118

Query: 114 LADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQ 170
              + P    + S+ +  I+    +G    +             LIGCDGV S+V Q
Sbjct: 119 -VLDHPLVEFRTSTHVVGIEQ---DGDGVTVF-DQQGNRWTGDALIGCDGVKSVVRQ 170

Length = 396

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 22/191 (11%)

Query: 4   VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVS 63
                +I GAG+AGL+ A+ L   G    ++EK+  L   GA L L+PNA   L+ LGV+
Sbjct: 1   TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVA 60

Query: 64  HKLTSVYA-----------PAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLE 112
            +L+                A+ +    LG  A +         R        HR  L  
Sbjct: 61  DRLSGTGVTPKALYLMDGRKARPLLAMQLGDLARK---------RWHHPYIVCHRADLQS 111

Query: 113 ALADELPDDT-IQFSSKIAAIDS-QTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQ 170
           AL D   ++  I+           QT N  +A II       + A  LI CDGV SM+  
Sbjct: 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRA 171

Query: 171 WLGLSESINSG 181
             G S++  SG
Sbjct: 172 KAGFSKARFSG 182

Length = 400

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 25/234 (10%)

Query: 3   MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGV 62
              + V+I+G GI GL+ A+ALRR GI   ++E     R  GA +TL  NA  AL  LGV
Sbjct: 2   AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGV 61

Query: 63  ---------SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEA 113
                          ++ P      T L    T  L+     G  G    ++ R  +L  
Sbjct: 62  LDECLEAGFGFDGVDLFDPDG----TLLAELPTPRLAGDDLPGGGGIMRPALAR--ILAD 115

Query: 114 LADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV-AQWL 172
            A       ++  + + AI+ Q        +    D T  +  +++G DG++S V +   
Sbjct: 116 AARAA-GADVRLGTTVTAIE-QD--DDGVTVT-FSDGTTGRYDLVVGADGLYSKVRSLVF 170

Query: 173 G-LSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225
               E   +G+   R  AV P    ++     ++G   +AG +PL++  +Y F+
Sbjct: 171 PDEPEPEYTGQGVWR--AVLPRPAEVD-RSLMYLGPTTKAGVVPLSEDLMYLFV 221

Length = 375

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 47/176 (26%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK--SDGLRATGAALTLSPNAWLALD 58
           ME    DVVI+GAG AG + A  L + G+  LVLEK    G +       LSP A   L 
Sbjct: 2   MEY---DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-LSPRALEELI 57

Query: 59  ALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL 118
                     V   A+  F      G    +      G I      V R    + LA+  
Sbjct: 58  PDFDEEIERKVTG-ARIYF-----PGEKVAIEVPVGEGYI------VDRAKFDKWLAERA 105

Query: 119 PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL 174
            +   +                   +        ++AKV+I  DGV+S +A+ LGL
Sbjct: 106 EEAGAELYPGTRVTGVI-REDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160

Length = 396

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 7   DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRA-----TGAALTLSPNAWLALDAL 60
           D+VI+G G  GLA A+AL R G +K  ++E +                LS  +   L+ L
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60

Query: 61  GVSHKLTSV-YAPAKRVFVTNLGTGATQELSYAGKS----GRIGSGLRSVHRQSLLEALA 115
           GV  K+      P + + V++ G+                G +      V +Q+L E L 
Sbjct: 61  GVWDKIEPARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVE--NRVLQQALWERLQ 118

Query: 116 DELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
            ELP+          A   +    S    + L D   ++A++L+G DG +S V Q  G+ 
Sbjct: 119 -ELPNRVTI---LCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIP 174

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 24/183 (13%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH 64
           E DV+I+G G AGL  A+ L R G++ +++E+         A  L+      L   G+  
Sbjct: 1   ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLED 60

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHR------QSLLEAL---- 114
           ++ +  AP       + G G      Y     R      +         Q+ LE +    
Sbjct: 61  RILAEGAP-------HEGMG---LAFYNTSRRRADLDFLTSPPRVTVYPQTELEPILREH 110

Query: 115 ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI--IKAKVLIGCDGVHSMVAQWL 172
           A+      ++F +++ ++  Q  +G +A + +  D     ++AK L+GCDG  S V + L
Sbjct: 111 AEARGAQ-VRFGTEVLSL-EQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQL 168

Query: 173 GLS 175
           G+ 
Sbjct: 169 GIE 171

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 20/193 (10%)

Query: 8   VVIIGAGIAGLATAVAL-RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           V IIG GIAG+A A+ L +   +   + E +      GA ++   NA  A+  LG+    
Sbjct: 3   VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAY 62

Query: 67  TSVY----APAKRV-FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDD 121
           T V     AP + + F    G+ A    SY G +   G G  SVHR   L+AL   LP+ 
Sbjct: 63  TQVADSTPAPWQDIWFEWRNGSDA----SYLGATIAPGVGQSSVHRADFLDALLKHLPEG 118

Query: 122 TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV------AQWLGLS 175
              F  +   I+ Q    +    +   D T  +  +LIG DG+ S +       Q     
Sbjct: 119 IASFGKRATQIEEQ----AEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPV 174

Query: 176 ESINSGRSSVRGL 188
               SG  + RGL
Sbjct: 175 RPRFSGTCAYRGL 187

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 36/187 (19%)

Query: 7   DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAA--------LTLSPNAWLAL 57
           DV+I+G G+ GL+ A+AL RLG IK  ++E      +  AA        L LS  +   L
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEA----NSPSAAQPGFDARSLALSYGSKQIL 56

Query: 58  DALGVSHKLTSVYAPAKRVFVTNLG-TGATQ---------ELSYAGKSGRIGSGLRSVHR 107
           + LG+  KL     P   + V++ G  GAT           L Y  +   +G        
Sbjct: 57  EKLGLWPKLAPFATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLG-------- 108

Query: 108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM 167
           Q+LL  L   L +  +   ++   I            + L +   ++AK+LI  DG +S 
Sbjct: 109 QALLSRL-ALLTNIQLYCPARYKEIIRNQ----DYVRVTLDNGQQLRAKLLIAADGANSK 163

Query: 168 VAQWLGL 174
           V + L +
Sbjct: 164 VRELLSI 170

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 33/253 (13%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
               E  V+I+G G  GLA A+ L R G+ ++++E+ DG      A T S  +      L
Sbjct: 3   ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL 62

Query: 61  GVSHKLTSVYAPAK----RVFVTNLGT---------GATQELSYAGKSGRIGSGLRSVHR 107
           G++ ++ S   P        + T L            A + ++  G            HR
Sbjct: 63  GIADEVRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHR 122

Query: 108 --QSLLEAL----ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL--GDSTIIKAKVLI 159
             Q  LE +    A   P  T+++  ++   + Q  +G +A + +L  G+S  I+A  L+
Sbjct: 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE-QDADGVTATVEDLDGGESLTIRADYLV 181

Query: 160 GCDGVHSMVAQWLGLSESINSGRSSV-RGLAVFPHGHGLNQDIRQ-------FVGVGFRA 211
           GCDG  S V + LG+S     G S + R L+++    GL   +               R 
Sbjct: 182 GCDGARSAVRRSLGISY---EGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRG 238

Query: 212 GFIPLNDRDVYWF 224
             + ++ RD + F
Sbjct: 239 VLVAIDGRDEWLF 251

Length = 545

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 36/188 (19%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEK--SDGLRATGAALTLSPNAWLALDALGVSH 64
           DV I+G GI GL  A AL+  G++  ++E   ++   A G A  LS  +    + +GV  
Sbjct: 20  DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE 79

Query: 65  KLTSVYAPAKRVFVTN-------------LGTGATQELSYAGKSGRIGSGLRSVHRQSLL 111
           K+       +++ +++             LG   T+ L Y G+           H Q LL
Sbjct: 80  KILPQIGKFRQIRLSDADYPGVVKFQPTDLG---TEALGYVGE-----------H-QVLL 124

Query: 112 EALADELPDD-TIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIKAKVLIGCDGVHSM 167
           EAL + L     I +      +         AA + L   G    +++K+++  DG  S 
Sbjct: 125 EALQEFLQSCPNITWLCPAEVV--SVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182

Query: 168 VAQWLGLS 175
           + Q  G+ 
Sbjct: 183 IRQAAGIK 190

Length = 415

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAA 46
          DVV+IG GI GL+TA  L R G+   +LE+ D    A+G  
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRN 41

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 7   DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT--GAALTLSPNAWLALDALGV 62
           DVVI G G  GLA AVAL++    +   V++ +     +    A  ++  A   L+ALGV
Sbjct: 3   DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGV 62

Query: 63  SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSG---LRSVHRQSLLEALADELP 119
             ++     P   + +T+  T       +    G +  G      V  + L+ AL     
Sbjct: 63  WDEIAPEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE 122

Query: 120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS 166
              I      +  D +T        + L D ++++A++L+  DG  S
Sbjct: 123 ALGIDLREATSVTDFET--RDEGVTVTLSDGSVLEARLLVAADGARS 167

Length = 403

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD--GLRATGAALT 48
          M   DVV+IGAG+ GLA A  L R G+K  VLEK+D  G RA    L 
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD 48

Length = 487

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 63/250 (25%), Positives = 93/250 (37%), Gaps = 46/250 (18%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           DVV++GAG AG + A  L   G++ L+LEK    R       LSP A   LD  G     
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVN 61

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFS 126
               A   R F      G + E+    +   +      + R +  E LA+   +   +  
Sbjct: 62  LVRGA---RFF---SPNGDSVEIPIETELAYV------IDRDAFDEQLAERAQEAGAELR 109

Query: 127 SKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL------------ 174
                +    ++     +I  G    + AK++IG DG  S+VA+ LGL            
Sbjct: 110 LG-TRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPREYGVAAR 168

Query: 175 ------SESINSGRSSV---RGLA------VFPHGHGLNQDIRQFVGVGFRAGFIPLNDR 219
                  E ++     V   RG+       VFP G     D    VGVG R+     + +
Sbjct: 169 AEVEMPDEEVDEDFVEVYIDRGIVPGGYGWVFPKG-----DGTANVGVGSRSAEEGEDPK 223

Query: 220 DVY-WFLNRY 228
                FL R 
Sbjct: 224 KYLKDFLARR 233

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 30/186 (16%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           DV+I+GAG  GL  A+ L R G+   ++EK+           + P      D LGV    
Sbjct: 5   DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGV---- 60

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQS--------LL------- 111
                   RV     G        Y        S + +    +        L+       
Sbjct: 61  ------LDRVVA--AGGLYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTE 112

Query: 112 EALADELPDDTIQ--FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA 169
             L + L +   +  F  ++   + Q  +G +A +        ++A+ L+G DG  S V 
Sbjct: 113 RILRERLAELGHRVEFGCELVGFE-QDADGVTARVAGPAGEETVRARYLVGADGGRSFVR 171

Query: 170 QWLGLS 175
           + LG+ 
Sbjct: 172 KALGIG 177

Length = 502

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAA 46
           ++ DVVIIG GI GL+ A  L   G    VLE  + G  A G  
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRN 46

Length = 387

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 51/203 (25%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA-----LTLSP---- 51
              ++ DVV++G G+ G + A+AL + G++  +L      R    A       +SP    
Sbjct: 1   AYHMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQA 60

Query: 52  -----NAWLALDALGVSHKLTSVYAPAKRVF--------VTNLGTGATQELSYAGKSGRI 98
                  W ALDA     +L  VY    RVF         +    G  Q L++  +S  I
Sbjct: 61  FLERLGVWQALDA----ARLAPVY--DMRVFGDAHARLHFSAYQAGVPQ-LAWIVESSLI 113

Query: 99  G----SGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154
                + LR     +   A A  L  D                    AA + L D  +++
Sbjct: 114 ERALWAALRFQPNLTWFPARAQGLEVD------------------PDAATLTLADGQVLR 155

Query: 155 AKVLIGCDGVHSMVAQWLGLSES 177
           A +++G DG HS V    G+   
Sbjct: 156 ADLVVGADGAHSWVRSQAGIKAE 178

Length = 388

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
           + I+GAGIAGLA A ALR  G +  V EK  G+
Sbjct: 3  SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36

Length = 331

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 22/191 (11%)

Query: 7   DVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGAAL------------TLS 50
           DVVI+G G  GLA A AL        +K L+L+  D  +                  +++
Sbjct: 2   DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSIT 61

Query: 51  PNAWLALDALGV-SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQS 109
           P +      +G   H  +    P  R+ V +  + A            +   + + + Q+
Sbjct: 62  PASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQN 121

Query: 110 LLEALADELPDDTIQFSSKIAAID-----SQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164
            L     E   D ++  +    I          + S+   I L D  ++  K+LIG DG 
Sbjct: 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGS 181

Query: 165 HSMVAQWLGLS 175
           +S V +   + 
Sbjct: 182 NSNVRKAANID 192

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAA 46
          M + E DVV+IG G AGL  A+     G+K  +L K+   R  T AA
Sbjct: 2  MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAA 48

Length = 562

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG 39
                DV IIGAG +GLA A AL++ G+   ++ EK D 
Sbjct: 4  GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43

Length = 443

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT------GAALTLSPNAWLALD 58
          DVV+IG+G+AGLA A+     G+K  V+EK             G     +P     +D
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGID 58

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41
          M   DV+IIG G AGL  A+   R G+K +++ +     
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG 39

Length = 305

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATG---AALTLSPNAWLALDALGVS 63
           V++ G GI GL  A+A ++ G   LV EK    +R  G     + +  NA  AL+A+ + 
Sbjct: 84  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDID 143

Query: 64  HKLTSVYA---PAKRVFVTNLGTGATQELSYAGKSGRIGSGL---RSVHRQSLLEALADE 117
                + A      R+     G   +  + +   +     GL   R + R +L + LA  
Sbjct: 144 VAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA 203

Query: 118 LPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL-GLSE 176
           + +D I+  S +   +    +G    ++ L +    +  +L+G DG+ S V   L G SE
Sbjct: 204 VGEDVIRNESNVVDFED---SGDKVTVV-LENGQRYEGDLLVGADGIWSKVRNNLFGRSE 259

Query: 177 SINSGRSSVRGLAVF 191
           +  SG +   G+A F
Sbjct: 260 ATYSGYTCYTGIADF 274

Length = 668

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 45.7 bits (108), Expect = 8e-06
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           + VV+ GA +AG A A  L R G    ++E+  GLR  G A+ +   A   L+ +G+   
Sbjct: 2   KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGL--- 58

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
           L +      R+   +       EL    +S   G  + S   + L + L  EL     Q 
Sbjct: 59  LAAAQEHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLV-ELLYGATQP 117

Query: 126 SSKIAAIDS-QTLNGSSAAI-INLGDSTIIKAKVLIGCDGVHSMV 168
           S +    DS  TL     ++ +    +   +  ++IG DG+HS V
Sbjct: 118 SVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162

Length = 372

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA---TGAALTLSPNAWLALDALGVS 63
           D +I+GAG+AG   A+ L R G + LV+E+ +   A   TG  L               +
Sbjct: 7   DAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRL--------------YA 52

Query: 64  HKLTSV------YAPAKRV-------FVTNLGTGAT--QELSYAGKSGRIGSGLRSVHRQ 108
           H L  +       AP +R+       F+T                 S R  S LRS    
Sbjct: 53  HSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDA 112

Query: 109 SLLEALADELP--------DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160
            L+E   +           D+ +Q   K+  +++              D  +I+AK +I 
Sbjct: 113 WLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA--------------DGDVIEAKTVIL 158

Query: 161 CDGVHSMVAQWLGLSESINSGRSSV 185
            DGV+S++A+ LG+++ +     +V
Sbjct: 159 ADGVNSILAEKLGMAKRVKPTDVAV 183

Length = 428

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          DV+IIGAG  GLA A+  ++ G+  L++EK 
Sbjct: 1  DVIIIGAGPCGLACAIEAQKAGLSYLIIEKG 31

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 10 IIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          I+GAG++GL  A  L + G   LVLEK D +
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKA--LVLEKSDGL 40
          M     DVVIIG GI G ATA  L          +LEK DG+
Sbjct: 1  MMDY--DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40

Length = 429

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVVIIG G AGLA A+ L RLG+K  ++E+  G 
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGT 34

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 31/186 (16%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL----RATG----AALTLSPNAWLALD 58
           DVVI+GAG  GL  A  L + G++ LVLE+   L    RA G    A   L         
Sbjct: 12  DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQ-------- 63

Query: 59  ALGVSHKLT--SVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSG--LRSVHRQSLLEAL 114
           A+G++ ++   +      R           + L+   +      G   R+   Q LLEA+
Sbjct: 64  AIGLADEVLPHTTPNHGMRFL-----DAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAV 118

Query: 115 ----ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDSTIIKAKVLIGCDGVHSMVA 169
                   P   ++F  ++ A+ +Q  +G +  + +  G    ++A+ ++GCDG +S V 
Sbjct: 119 LRAGLARFPHVRVRFGHEVTAL-TQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVR 177

Query: 170 QWLGLS 175
           + LG+ 
Sbjct: 178 RTLGVP 183

Length = 500

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 7  DVVIIGAGIAGLATAVAL--RRLGIKALVLEKSDGL 40
          D VIIG GI GL+TA+ L  R  G +  VLEK  G 
Sbjct: 4  DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39

Length = 393

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
                D  IIG GIAG A A+AL R G +  + E  +   A GA
Sbjct: 257 SPKARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP-AQGA 299

Length = 662

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVV++G G AG+A A+A  RLG K L++E+   L
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWL 34

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD---GLRAT 43
            ++ VVIIGAG AGL  A  L + G    VLE      G+  T
Sbjct: 2  TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45

Length = 479

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 7/165 (4%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           DV+I G+GIAG+A A  L   G    V+E++   RA   A  L P+    + A+G+   +
Sbjct: 7   DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV 66

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGR---IGSGLRSVHRQSLLEALADELPDDTI 123
            +     +              L Y   S     I      + R  LL A  D LP+  +
Sbjct: 67  FAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRR--LLLAKLDGLPNVRL 124

Query: 124 QFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV 168
           +F + I  I+ +  +G+  ++  L D   +   VL+G DG  SM+
Sbjct: 125 RFETSIERIE-RDADGTVTSVT-LSDGERVAPTVLVGADGARSMI 167

Length = 388

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 37/193 (19%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIK-ALV---LEKSDGLRATGAALTLSPNAWLA 56
           ME    D+ +IG G AGLA A+AL R G   ALV      +D LR T  AL L P+    
Sbjct: 3   MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTT--AL-LGPSIRF- 57

Query: 57  LDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAG----KSGRIG----------SGL 102
           L+ LG+  +L    AP + + + +    AT  L  A     ++  IG            L
Sbjct: 58  LERLGLWARLAPHAAPLQSMRIVD----ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLL 113

Query: 103 RSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162
                   LEA   ELP+ T +F  +  ++  +         + L D T + A++++G D
Sbjct: 114 NRA-----LEARVAELPNIT-RFGDEAESVRPRE----DEVTVTLADGTTLSARLVVGAD 163

Query: 163 GVHSMVAQWLGLS 175
           G +S V +  G+ 
Sbjct: 164 GRNSPVREAAGIG 176

Length = 388

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DV++IG+G  GL+ A+  R+LG+  +VLEK      T A
Sbjct: 11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49

Length = 574

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 46/188 (24%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEK---SDGLRATGAALTLSPNAWLALDALGVS 63
           DV+I+G  IAG   A AL + G K L+LE+   S   R  G    L P    AL  LG+ 
Sbjct: 35  DVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGE--LLQPGGVNALKELGME 92

Query: 64  HKLTSVYAPAKRVFVTNLGTGATQELSYAGKS-------GRIGSGLRSVHRQS------L 110
                +  P     V +   G   +L Y   +       G     LRS    +      +
Sbjct: 93  ECAEGIGMPCFGYVVFD-HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTM 151

Query: 111 LEALADELPDDTIQFSSKIAAID---------SQTLNGSSAAIINLGDSTIIK---AKVL 158
           LE   + L ++   FS +   ++          +          N   +T+ K   A ++
Sbjct: 152 LEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLV 211

Query: 159 IGCDGVHS 166
           + CDG  S
Sbjct: 212 VMCDGGMS 219

Length = 567

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          D+V++GAG AGL+ A +L   G+K  ++E+ 
Sbjct: 5  DIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35

Length = 392

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          + M E DV++IG GI G   A      G+K  ++EK D
Sbjct: 8  LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45

Length = 532

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
             V + V++IG G+AG+  A+ L  +G K  ++EK
Sbjct: 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEK 155

Length = 622

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS 50
          DV++IG G+AGL  A+A    G +  ++ K  G      AL  S
Sbjct: 4  DVLVIGGGLAGLTAALAAAEAGKRVALVAKGQG------ALHFS 41

Length = 422

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          D++I+GAGI GLA A A  R G+   V+E+S   RA GA
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIERSS--RAQGA 38

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSD--GLRA 42
           V+IGAG  GLA A+ L   GI   V+E+ D  G RA
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DVV++G+G+AGL  A+A RR G + LV+ K+ 
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49

Length = 541

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          M + DV++IGAG AG   A    +LG K  ++EK
Sbjct: 1  MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34

Length = 460

>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLR 41
          ME+++ DVVI+G+G+AGL  AVA        +   V+ K+  +R
Sbjct: 1  MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44

Length = 577

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 51/200 (25%)

Query: 3   MVEEDVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGA---------ALTLS 50
           M   DV+I+G G+AG   A+AL RL   G+   ++E      A  +         A+ L+
Sbjct: 1   MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA----FAPESDAHPGFDARAIALA 56

Query: 51  PNAWLALDALGVSHKLTSVYAPAKRVFVTNLG-TGATQ---------------ELSYAGK 94
                 L  LGV   L     P   + V++ G  G  +               EL   G+
Sbjct: 57  AGTCQQLARLGVWQALADCATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQ 116

Query: 95  SGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK 154
                           L AL D+ P  T+   +++A +  +T        + L D   + 
Sbjct: 117 R---------------LFALLDKAPGVTLHCPARVANV-ERTQGS---VRVTLDDGETLT 157

Query: 155 AKVLIGCDGVHSMVAQWLGL 174
            ++L+  DG HS + + LG+
Sbjct: 158 GRLLVAADGSHSALREALGI 177

Length = 395

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR 41
          VV++GAG  GLA A+ L + G+  ++L+  D L 
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS 59

Length = 547

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           V +IGAG AGLA A  L R G    V E+ +
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572

Length = 1019

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          V++IG GIAG+A A AL     K  +LE  D
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRD 33

Length = 435

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 40/166 (24%), Positives = 58/166 (34%), Gaps = 23/166 (13%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKL 66
            V+IG  + GL  A+ LRR G    V E+S   L   GA + L P    AL   GV+   
Sbjct: 9   AVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVAL-- 66

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQS----LLEALADELPDDT 122
                        ++G   ++E  Y  + GR+         Q+    L  AL    P + 
Sbjct: 67  -----------PADIGV-PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAER 114

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV 168
                 +   +               D     A +L+G DG  S V
Sbjct: 115 YHLGETLVGFEQ----DGDRVTARFADGRRETADLLVGADGGRSTV 156

Length = 386

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 8  VVIIGAGIAGLATAVALRRLG--IKALVLEKSD 38
          + IIG GIAGL+ A  L++ G  ++  + E  D
Sbjct: 3  IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35

Length = 444

>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          DV++IG G A L  A+A R  G   L+LE 
Sbjct: 6  DVLVIGGGNAALCAALAAREAGASVLLLEA 35

Length = 466

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 40/170 (23%)

Query: 7   DVVIIGAGIAGLATAVALR--RLGIKALVLEKSDGLRATGAALTLSPNAWL----ALDAL 60
           D+VI+GAG+AGL  A+ LR  R G++ L+++   G            + W      L  L
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPN------NHTWSDEFEDLGPL 54

Query: 61  G--VSH--KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALAD 116
              V H      V  P                    G+   IG G   V    L E L  
Sbjct: 55  APCVEHSWPGYEVRFP-------------------DGRRKLIGRGYGRVSSDRLHEELLR 95

Query: 117 ELPDDTIQF-SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165
              ++ +   ++K+A++D++       +++ L D   I+A+++I   G  
Sbjct: 96  RCAENGVIRLNAKVASVDAE----PVESLVVLEDGRTIRARLVIDARGAS 141

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          ++ +E DV I+GAG +GL  A  L + G+K  V E+
Sbjct: 21 LDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56

Length = 257

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
           M E DVV+IGAG AG   A+   +LG+K  ++EK + L
Sbjct: 1  MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39

Length = 454

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSD---GLRAT 43
          + I+G GIAGLA A  L + G +  V E  D   GL A+
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40

Length = 434

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLA-LDALGVSHK 65
           D+ +IG G AGLA A+ L R G++  ++E    +         +   W   L  LG++  
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI-----PGNHTYGVWDDDLSDLGLADC 55

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
           +  V+                Q         ++G+   SV    L E L  + P+  + +
Sbjct: 56  VEHVWPDVYEYR------FPKQPR-------KLGTAYGSVDSTRLHEELLQKCPEGGVLW 102

Query: 126 -SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG 173
              K    ++   +G + + +       I+A+++I   G   +V     
Sbjct: 103 LERKAIHAEA---DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRF 148

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 44/192 (22%)

Query: 3   MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGV 62
           M   DVVI G G+ GLA A  L+  G++  VLE+            L+ +A  AL     
Sbjct: 1   MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQR-------VPEPLAADAPPAL----- 48

Query: 63  SHKLTSVYAPAKRVF--------VTNLGTGATQELSYAGKS--GRIG-----SGLRS--- 104
             +++++ A ++++         +          +    K   GRI       G      
Sbjct: 49  --RVSAINAASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGH 106

Query: 105 -VHRQSLLEAL---ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG 160
            +    +  AL   A +  D T+   +++     Q   G + A + L D +++ A++++G
Sbjct: 107 IIENSVIHYALWQKAQQSSDITLLAPAELQ----QVAWGENEAFLTLKDGSMLTARLVVG 162

Query: 161 CDGVHSMVAQWL 172
            DG +S    WL
Sbjct: 163 ADGANS----WL 170

Length = 400

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT 67
           V I GAGIAG   A  LRR G +  ++E++  LR  G  +      +     +G++ +L 
Sbjct: 3   VAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR 62

Query: 68  SVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPD--DTIQF 125
                 + V   +       +L+       +G    S+ R  L  A+   +    +TI F
Sbjct: 63  EAGYQIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETI-F 121

Query: 126 SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV 168
              IA ID           +     T     ++IG DG+HS V
Sbjct: 122 DDSIATID----EHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160

Length = 391

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLE 35
           E  E  V+I+GAG+AGLA A  L   G K +VLE
Sbjct: 157 EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE 190

Length = 738

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
           VVIIGAG AGL+ +  L++ GI  +VLEK
Sbjct: 2  PVVIIGAGQAGLSVSYYLKQAGIDHVVLEK 31

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD--GLRATGAALTLSPNAWLALDALGVSH 64
          DV+I+GAG+AGL+ A  L++ G +  +LE  D  G R+  A         L    +  +H
Sbjct: 9  DVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEY-TDLGGQYINPTH 67

Query: 65 KLTSVYAPAKRV 76
               YA    V
Sbjct: 68 DALLAYAKEFGV 79

Length = 450

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 8  VVIIGAGIAGLATAVALRRLG--IKALVLEKSD 38
          V IIG GI GL+ A  L + G      +LE SD
Sbjct: 3  VAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35

Length = 451

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIK-ALVLEK 36
          DVV++G+G AGL+ A++ ++ G    ++LEK
Sbjct: 1  DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DV+IIGAG AGL  A+   R  +K L++E  +
Sbjct: 1  DVIIIGAGPAGLTAAIYAARANLKPLLIEGGE 32

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          D ++IG+GI GL TA  L   G K LVLE+
Sbjct: 2  DAIVIGSGIGGLVTATQLAVKGAKVLVLER 31

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 4  VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAALTLSPNAWLALDA 59
             DVV++G+G  G+  A+A    G++ L++EK D +  +    G  L L  N  +    
Sbjct: 5  ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAG 64

Query: 60 LGVSHKLTSVY 70
          +  SH+    Y
Sbjct: 65 VPDSHEDALAY 75

Length = 557

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 5  EEDVVIIGAGIAGLATAVALRRLGIKALVLE 35
          E  VV+IGAGIAGL  A  L + G +  +LE
Sbjct: 1  ETSVVVIGAGIAGLTAAALLAKRGYRVTLLE 31

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSD---GL 40
           V ++G+G AGLA A  L R G K  V E++D   GL
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL 181

Length = 471

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 5  EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          E DV++IG+G AGL+ AV     G+K +V+EK      T A
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52

Length = 581

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA 46
          DVVIIGAG  GL  A   +  G+  ++++KSDG    G A
Sbjct: 7  DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRA 46

Length = 487

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           +DVV++GAG  GL  A A  + G K  ++E +D
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169

Length = 415

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          +  E DVVI+GAG +GL  A  L + G+K  ++E+S
Sbjct: 14 DYAESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERS 49

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGL 40
          DV++IG G AG   A+A  R+G K  L+   +D +
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTI 35

Length = 391

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 5  EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39
          E DVV++G G AG   A+     G + LVLE++ G
Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54

Length = 492

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD---GLRATGAALTLSPN 52
          DV++IGAG AG++ A+     G+K L++E+++   G  AT A  T  P 
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPG 66

Length = 578

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          DV++IG G AGL  A++  + G + L+++K
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLIDK 31

Length = 405

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DV+IIG+G+AGL  A++L     +  VL K  
Sbjct: 9  DVLIIGSGLAGLTAALSLAP-SFRVTVLTKGP 39

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK06753	373	hypothetical protein; Provisional	99.98
PRK08013	400	oxidoreductase; Provisional	99.98
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.98
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.97
PRK07045	388	putative monooxygenase; Reviewed	99.97
PRK07588	391	hypothetical protein; Provisional	99.97
PRK05868	372	hypothetical protein; Validated	99.97
PRK06475	400	salicylate hydroxylase; Provisional	99.97
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.97
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.97
PRK09126	392	hypothetical protein; Provisional	99.97
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.97
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.97
PRK08163	396	salicylate hydroxylase; Provisional	99.97
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.97
PRK08244	493	hypothetical protein; Provisional	99.97
PRK06847	375	hypothetical protein; Provisional	99.97
PRK07190	487	hypothetical protein; Provisional	99.97
PRK06184	502	hypothetical protein; Provisional	99.97
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.97
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.97
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.97
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.96
PTZ00367	567	squalene epoxidase; Provisional	99.96
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.96
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.96
PRK07538	413	hypothetical protein; Provisional	99.96
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.96
PRK07236	386	hypothetical protein; Provisional	99.96
PRK06185	407	hypothetical protein; Provisional	99.96
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.96
PRK08294	634	phenol 2-monooxygenase; Provisional	99.96
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.96
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.96
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.96
PRK06996	398	hypothetical protein; Provisional	99.96
PLN02985	514	squalene monooxygenase	99.96
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.95
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.95
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.95
PRK06126	545	hypothetical protein; Provisional	99.95
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.95
PRK06834	488	hypothetical protein; Provisional	99.95
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.93
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.93
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.93
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.91
PRK11445	351	putative oxidoreductase; Provisional	99.91
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.9
PRK10015	429	oxidoreductase; Provisional	99.89
PRK10157	428	putative oxidoreductase FixC; Provisional	99.88
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.88
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.87
PLN02463	447	lycopene beta cyclase	99.85
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.85
PLN02697	529	lycopene epsilon cyclase	99.84
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.82
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.8
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.78
COG2081	408	Predicted flavoproteins [General function predicti	99.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.77
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.74
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.72
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.71
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.7
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.7
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.7
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.7
COG0579	429	Predicted dehydrogenase [General function predicti	99.69
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.69
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.67
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.66
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.66
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.66
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.64
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.64
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.62
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.62
PRK05257	494	malate:quinone oxidoreductase; Validated	99.62
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.6
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.59
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.58
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.58
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.57
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.55
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.54
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.54
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.54
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.53
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.52
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.51
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.5
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.5
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.49
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.49
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.47
PLN02661	357	Putative thiazole synthesis	99.46
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.45
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.42
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.39
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.38
PRK08274	466	tricarballylate dehydrogenase; Validated	99.38
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.38
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.37
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.36
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.36
PRK07804	541	L-aspartate oxidase; Provisional	99.36
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.35
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.35
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.35
PRK07121	492	hypothetical protein; Validated	99.35
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.33
PRK06175	433	L-aspartate oxidase; Provisional	99.33
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.33
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.32
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.31
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.31
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.3
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.3
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.3
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.3
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.29
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.28
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.28
PRK08401	466	L-aspartate oxidase; Provisional	99.28
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.28
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.27
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.26
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.26
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.25
PLN02568	539	polyamine oxidase	99.25
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.24
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.24
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.24
PRK08275	554	putative oxidoreductase; Provisional	99.24
PRK08071	510	L-aspartate oxidase; Provisional	99.23
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.22
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.22
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.21
PRK10262	321	thioredoxin reductase; Provisional	99.18
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.18
PLN02815	594	L-aspartate oxidase	99.17
PRK14694	468	putative mercuric reductase; Provisional	99.17
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.16
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.16
PRK09077	536	L-aspartate oxidase; Provisional	99.16
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.15
PRK07395	553	L-aspartate oxidase; Provisional	99.15
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.15
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.14
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.14
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.14
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.14
KOG2853	509	consensus Possible oxidoreductase [General functio	99.14
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.13
PRK07512	513	L-aspartate oxidase; Provisional	99.13
PRK06370	463	mercuric reductase; Validated	99.13
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.13
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.13
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.12
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.12
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.11
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.11
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.11
PRK06116	450	glutathione reductase; Validated	99.1
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.1
PRK09897	534	hypothetical protein; Provisional	99.1
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.08
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.08
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.08
PLN02612	567	phytoene desaturase	99.07
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.07
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.06
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.06
PLN02507	499	glutathione reductase	99.05
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.05
PRK12839	572	hypothetical protein; Provisional	99.05
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.05
PRK13748	561	putative mercuric reductase; Provisional	99.04
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.04
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.03
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.03
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.02
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.01
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.99
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.99
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.99
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.99
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.98
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.98
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.95
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.95
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.94
PTZ00058	561	glutathione reductase; Provisional	98.94
PRK14727	479	putative mercuric reductase; Provisional	98.93
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.92
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.92
PLN02676	487	polyamine oxidase	98.92
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.91
PLN02546	558	glutathione reductase	98.91
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.89
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.87
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.87
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.86
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.86
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.86
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.85
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.85
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.83
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.82
KOG2852	380	consensus Possible oxidoreductase [General functio	98.8
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.79
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.79
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.78
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.78
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.78
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.78
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.77
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.77
COG3573	552	Predicted oxidoreductase [General function predict	98.77
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.77
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.76
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.75
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.74
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.74
PRK07208	479	hypothetical protein; Provisional	98.74
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.73
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.72
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.72
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.72
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.72
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.72
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.71
PRK06116	450	glutathione reductase; Validated	98.71
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.7
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.68
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.68
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.67
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.66
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.65
PRK07846	451	mycothione reductase; Reviewed	98.65
PRK07846	451	mycothione reductase; Reviewed	98.64
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.63
PRK07233	434	hypothetical protein; Provisional	98.62
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.62
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.62
PLN02576	496	protoporphyrinogen oxidase	98.6
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.58
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.58
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.58
PLN02507	499	glutathione reductase	98.58
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.57
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.57
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.57
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.56
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.56
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.56
COG3349	485	Uncharacterized conserved protein [Function unknow	98.56
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.56
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.56
PLN02268	435	probable polyamine oxidase	98.55
TIGR02053	463	MerA mercuric reductase. This model represents the	98.52
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.52
PRK02106	560	choline dehydrogenase; Validated	98.52
TIGR02053	463	MerA mercuric reductase. This model represents the	98.52
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.52
PLN02487	569	zeta-carotene desaturase	98.51
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.51
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.5
PRK06370	463	mercuric reductase; Validated	98.48
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.48
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.48
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.48
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.48
PTZ00052	499	thioredoxin reductase; Provisional	98.47
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.45
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.45
PRK12831	464	putative oxidoreductase; Provisional	98.45
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.44
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.44
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.44
PTZ00058	561	glutathione reductase; Provisional	98.41
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.41
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.41
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.41
PLN02852	491	ferredoxin-NADP+ reductase	98.4
PTZ00052	499	thioredoxin reductase; Provisional	98.38
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.37
PRK14694	468	putative mercuric reductase; Provisional	98.37
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.36
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.36
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.35
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.34
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.34
PRK14727	479	putative mercuric reductase; Provisional	98.34
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.33
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.32
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.3
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.29
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.29
PLN02529	738	lysine-specific histone demethylase 1	98.28
PLN02546	558	glutathione reductase	98.27
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.27
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.26
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.26
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.26
PRK13748	561	putative mercuric reductase; Provisional	98.26
PTZ00188	506	adrenodoxin reductase; Provisional	98.25
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.24
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.23
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.22
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.21
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.2
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.19
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.18
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.17
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.16
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.15
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.13
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.11
PRK10262	321	thioredoxin reductase; Provisional	98.1
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.09
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.09
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.08
PLN02785	587	Protein HOTHEAD	98.07
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	98.07
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.06
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.05
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.05
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.04
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.03
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.0
PLN03000	881	amine oxidase	97.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.95
PRK13984	604	putative oxidoreductase; Provisional	97.94
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.93
PLN02976	1713	amine oxidase	97.91
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.86
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.79
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.75
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.74
PRK12831	464	putative oxidoreductase; Provisional	97.74
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.72
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.72
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.7
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.7
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.67
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.65
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.64
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.63
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.6
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.59
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.5
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.48
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.47
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.41
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.4
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.38
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.37
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.35
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.33
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.27
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.26
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.21
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.18
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.17
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.17
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.16
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.15
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.14
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.14
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.11
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.09
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.08
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.07
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.05
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.04
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.02
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.01
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.0
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.94
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.92
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.91
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.9
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.87
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	96.85
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.83
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.79
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.78
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.77
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.77
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.72
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.71
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.68
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.68
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.64
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.64
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.64
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.63
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.59
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.59
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.57
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.56
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.53
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.53
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.52
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.49
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.45
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.43
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.43
PRK13984	604	putative oxidoreductase; Provisional	96.43
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.4
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.37
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.37
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.36
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.34
PRK04148	134	hypothetical protein; Provisional	96.32
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.31
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.3
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.27
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.25
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.23
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.23
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.19
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	96.19
PRK07417	279	arogenate dehydrogenase; Reviewed	96.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.17
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.14
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.12
PRK06223	307	malate dehydrogenase; Reviewed	96.11
PLN02602	350	lactate dehydrogenase	96.1
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.08
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.07
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.06
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.03
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.99
PRK08328	231	hypothetical protein; Provisional	95.98
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.96
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	95.96
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.95
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.95
PRK10669	558	putative cation:proton antiport protein; Provision	95.94
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.94
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.91
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.9
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.89
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.84
KOG2755	334	consensus Oxidoreductase [General function predict	95.83
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.81
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.79
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.79
PTZ00117	319	malate dehydrogenase; Provisional	95.78
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.77
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.76
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	95.76
PLN02852	491	ferredoxin-NADP+ reductase	95.74
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.74
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.74
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.74
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.73
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.69
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.67
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.64
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.62
PRK08223	287	hypothetical protein; Validated	95.62
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	95.6
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.59
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.59
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.57
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.56
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.55
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.53
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.53
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.53
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.53
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.51
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.5
PRK09496	453	trkA potassium transporter peripheral membrane com	95.49
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	95.49
PLN02240	352	UDP-glucose 4-epimerase	95.49
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.44
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	95.43

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=2.9e-30  Score=206.96  Aligned_cols=209  Identities=29%  Similarity=0.411  Sum_probs=158.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+||+||||||+|+++|..|+++|++|+||||. ......++++.+.++++++|+++|+.+.+.....+.......+...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            479999999999999999999999999999998 4555667999999999999999999888887776555554444333


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~a~~vV  159 (232)
                      .....++......  ....+.+.+..+.+.|.+.+.   +++++++++|+.++.++   +. +.+++. +|++++||+||
T Consensus        82 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~---~~-v~v~l~~dG~~~~a~llV  155 (387)
T COG0654          82 RRLLIFDAAELGR--GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG---DG-VTVTLSFDGETLDADLLV  155 (387)
T ss_pred             ceeEEecccccCC--CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC---Cc-eEEEEcCCCcEEecCEEE
Confidence            2234444444443  455678999999999999874   48999999999999885   33 557777 99999999999


Q ss_pred             ecCCCchhhhhhhcC-CCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609          160 GCDGVHSMVAQWLGL-SESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV  221 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  221 (232)
                      +|||.+|.+|+.++. .... .+.+..+.+.+....+ .....+.+|.+.+ .+.++|++++..
T Consensus       156 gADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~p~~~~~~  217 (387)
T COG0654         156 GADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEP-HEGRAGERFTHAG-PFALLPLPDNRS  217 (387)
T ss_pred             ECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCC-CCCeEEEEecCCC-ceEEEecCCCce
Confidence            999999999999993 3333 4555555555555422 2233444555555 488999996553

>PRK06753 hypothetical protein; Provisional

Probab=99.98  E-value=4.6e-30  Score=205.43  Aligned_cols=211  Identities=24%  Similarity=0.391  Sum_probs=164.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.+...++++.+++++++.|+++|+.+.+.....+.....+++.. +..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~-g~~   80 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK-GTL   80 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC-CCE
Confidence            7999999999999999999999999999999988878899999999999999999999888777777777766543 333


Q ss_pred             -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                       ...++.  .   ....+.++|..|.+.|.+.+++.+++++++|++++.++   .. +.|++.+|+++.+|+||+|||.+
T Consensus        81 ~~~~~~~--~---~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~~~vigadG~~  151 (373)
T PRK06753         81 LNKVKLK--S---NTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET---DK-VTIHFADGESEAFDLCIGADGIH  151 (373)
T ss_pred             Eeecccc--c---CCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC---Cc-EEEEECCCCEEecCEEEECCCcc
Confidence             322221  1   22345789999999999998878899999999998653   44 77888999999999999999999


Q ss_pred             hhhhhhhcCC-CCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          166 SMVAQWLGLS-ESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       166 S~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      |.+|+.++.. .+.+.+..++++.+...... .......++..+.+++++|++++..+|++.+.
T Consensus       152 S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~  214 (373)
T PRK06753        152 SKVRQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITIN  214 (373)
T ss_pred             hHHHHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEec
Confidence            9999998644 34456677777665433211 12233445555556889999999888877654

>PRK08013 oxidoreductase; Provisional

Probab=99.98  E-value=9.1e-30  Score=205.13  Aligned_cols=208  Identities=20%  Similarity=0.244  Sum_probs=152.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeecccHHHHHHHcCChHHHHhh-ccCceee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRV   76 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~   76 (232)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+..      ..++..+.++++++|+++|+++.+.+. ..+.+..
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~   81 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM   81 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence            458999999999999999999999999999999886532      125667899999999999999998765 4566666


Q ss_pred             EEEEcCCCceeEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609           77 FVTNLGTGATQELSYAGK-SGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI  152 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~  152 (232)
                      .++....  ...+.+... .+. +...+.++|..+.+.|.+.+.   +++++++++|++++.++   +. +.+++.+|++
T Consensus        82 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~  154 (400)
T PRK08013         82 EVWDKDS--FGRIAFDDQSMGY-SHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE---NE-AFLTLKDGSM  154 (400)
T ss_pred             EEEeCCC--CceEEEcccccCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-EEEEEcCCCE
Confidence            6654321  112222211 111 233568999999999988763   68999999999998764   34 7788889999


Q ss_pred             EEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609          153 IKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD  220 (232)
Q Consensus       153 ~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (232)
                      ++||+||+|||.+|.+|+.++.+.... +.+.++.+.+....+. ....+..|.+++ .++++|++++.
T Consensus       155 i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~  221 (400)
T PRK08013        155 LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPH-DAVARQVFHGDG-ILAFLPLSDPH  221 (400)
T ss_pred             EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCC-CCEEEEEEcCCC-CEEEEECCCCC
Confidence            999999999999999999998875543 3455555554433221 122344565556 57788998765

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.98  E-value=1.2e-29  Score=202.74  Aligned_cols=204  Identities=21%  Similarity=0.267  Sum_probs=154.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC----cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL----RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..    ...++++.+++++.++|+++|+++.+.....+.....+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            58999999999999999999999999999997532    23478999999999999999999998777777777766653


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      .......++.  ...  ...++.++|..|.+.|.+.+.   +++++++++++++..++   +. +.+.+.++ +++||+|
T Consensus        82 ~g~~~~~~~~--~~~--~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~~-~~~adlv  152 (374)
T PRK06617         82 KASEILDLRN--DAD--AVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN---DY-SIIKFDDK-QIKCNLL  152 (374)
T ss_pred             CCceEEEecC--CCC--CCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC---Ce-EEEEEcCC-EEeeCEE
Confidence            3222233322  111  234678999999999998764   47899999999998764   33 66778776 8999999


Q ss_pred             EecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609          159 IGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD  220 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (232)
                      |+|||.+|.+|+.++.+......+.++.+.+....++ .+..++.|...|+ ++++|++++.
T Consensus       153 IgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lPl~~~~  212 (374)
T PRK06617        153 IICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPH-ENCAMEHFLPLGP-FALLPLKDQY  212 (374)
T ss_pred             EEeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCC-CCEEEEEecCCCC-EEEeECCCCC
Confidence            9999999999999976643333366666665543322 2234566666666 8889999875

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.97  E-value=1.4e-29  Score=206.03  Aligned_cols=216  Identities=20%  Similarity=0.284  Sum_probs=156.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCCCc------------CcceeeeecccHHHHHHHcCChHHHHhh
Q 044609            6 EDVVIIGAGIAGLATAVALRR----LGIKALVLEKSDGLR------------ATGAALTLSPNAWLALDALGVSHKLTSV   69 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~----~g~~v~viE~~~~~~------------~~~~~~~~~~~~~~~l~~~g~~~~~~~~   69 (232)
                      |||+||||||+|+++|+.|++    +|++|+|||+.+.+.            ..++++.+.++++++|+++|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999999    899999999954332            1357899999999999999999998765


Q ss_pred             c-cCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-----CCeEEeCceEEEEEec----CCCC
Q 044609           70 Y-APAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP-----DDTIQFSSKIAAIDSQ----TLNG  139 (232)
Q Consensus        70 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~i~~~~~v~~i~~~----~~~g  139 (232)
                      . .+...+.++... + ....++....+. ....+.+++..+.+.|.+.+.     +++++++++|++++..    ++++
T Consensus        81 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~  157 (437)
T TIGR01989        81 RIQPFGRMQVWDGC-S-LALIRFDRDNGK-EDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS  157 (437)
T ss_pred             cCCceeeEEEecCC-C-CceEEeecCCCC-CceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence            3 566666654422 2 222333322221 333567899999998887653     3789999999999752    1113


Q ss_pred             CccEEEEeCCCcEEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCC
Q 044609          140 SSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLND  218 (232)
Q Consensus       140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  218 (232)
                      .. +.|++.+|++++||+||+|||.+|.+|+.++.+..+. +.+.++.+.+...........++.|..++. ++++|+++
T Consensus       158 ~~-v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~-~~~lPl~~  235 (437)
T TIGR01989       158 NW-VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGP-IALLPLPD  235 (437)
T ss_pred             Cc-eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCC-EEEeECCC
Confidence            44 7888899999999999999999999999999886654 344555555554332222345666666665 77899998


Q ss_pred             CeEEEEEE
Q 044609          219 RDVYWFLN  226 (232)
Q Consensus       219 ~~~~~~~~  226 (232)
                      +..+|++.
T Consensus       236 ~~~~~~~~  243 (437)
T TIGR01989       236 NNSTLVWS  243 (437)
T ss_pred             CCEEEEEe
Confidence            87655443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07045 putative monooxygenase; Reviewed

Probab=99.97  E-value=3.2e-29  Score=201.47  Aligned_cols=221  Identities=21%  Similarity=0.230  Sum_probs=155.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccC-ceeeEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAP-AKRVFVT   79 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~   79 (232)
                      |++.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++.++|+++|+++.+...... ......+
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence            777889999999999999999999999999999999998866556677999999999999999998775543 3333333


Q ss_pred             EcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609           80 NLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA  155 (232)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a  155 (232)
                        ..+.. ..+++.....  ......+.|..+.+.|.+.+.   +++++++++|++++.+++ +.. +.|++.+|+++.|
T Consensus        81 --~~g~~~~~~~~~~~~~--~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~g~~~~~  154 (388)
T PRK07045         81 --HDKELIASLDYRSASA--LGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTV-TSVTLSDGERVAP  154 (388)
T ss_pred             --cCCcEEEEecCCcccc--CCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcE-EEEEeCCCCEEEC
Confidence              23433 4444432211  111235789999999988753   689999999999988653 333 5788889999999


Q ss_pred             cEEEecCCCchhhhhh-hcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          156 KVLIGCDGVHSMVAQW-LGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      |+||+|||.+|.+|+. ++.+... .+....+.+.+......+ .....++..++.+++++|.+++..++++.++
T Consensus       155 ~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (388)
T PRK07045        155 TVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFP  228 (388)
T ss_pred             CEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCcc-ccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence            9999999999999996 4544221 122223344444333221 1122233333455678999888777766554

>PRK07588 hypothetical protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=201.03  Aligned_cols=216  Identities=20%  Similarity=0.248  Sum_probs=158.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.....+.++.++++++++|+++|+++.+.+.+.+...+.++... +..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-g~~   80 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT-GRR   80 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC-CCE
Confidence            7999999999999999999999999999999887777888999999999999999999998877777777766533 333


Q ss_pred             -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                       ..+++......++.....++|..|.+.|.+.++ +++++++++|++++.++   +. +.|.+.+|+++++|+||+|||.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~d~vIgADG~  156 (391)
T PRK07588         81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR---DG-VRVTFERGTPRDFDLVIGADGL  156 (391)
T ss_pred             EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC---Ce-EEEEECCCCEEEeCEEEECCCC
Confidence             344433221111223457999999999988766 58999999999998764   44 7788899999999999999999


Q ss_pred             chhhhhhhc-CCC--CcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          165 HSMVAQWLG-LSE--SINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       165 ~S~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      +|.+|+.+. ...  +.+.+...+........+ .....+..|.+++.+++++|++++..++++.+.
T Consensus       157 ~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~  222 (391)
T PRK07588        157 HSHVRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFR  222 (391)
T ss_pred             CccchhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEE
Confidence            999999763 221  122222222222211111 112335556667777889999888765555543

>PRK05868 hypothetical protein; Validated

Probab=99.97  E-value=1.2e-28  Score=196.59  Aligned_cols=215  Identities=20%  Similarity=0.222  Sum_probs=154.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.+...+.++.+.++++++|+++|+++.+.+...+.....+++.. +..
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~-g~~   81 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD-GNE   81 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC-CCE
Confidence            8999999999999999999999999999999988878888999999999999999999988777777777766543 333


Q ss_pred             -eEEeccCCCCC-CCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           87 -QELSYAGKSGR-IGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        87 -~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                       .........+. +......+.|..|.+.|.+.++ +++++++++|++++.++   +. +.|++.+|++++||+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG---DS-VRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC---Ce-EEEEECCCCeEEeCEEEECCC
Confidence             22111111110 1122456889999999887654 78999999999998653   44 788899999999999999999


Q ss_pred             CchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeE-EEecCeEEEEEEcCCCeE-EEEEEe
Q 044609          164 VHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQ-FVGVGFRAGFIPLNDRDV-YWFLNR  227 (232)
Q Consensus       164 ~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~~~  227 (232)
                      .+|.+|+.+..+... ......+.+....+...+. ..+.. +.+++.++.++|..++.. +.++.+
T Consensus       158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  223 (372)
T PRK05868        158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLEL-DYWQTWHYGDSTMAGVYSARNNTEARAALAF  223 (372)
T ss_pred             CCchHHHHhcCCcccceeecceEEEEEEcCCCCCC-CcceEEEecCCcEEEEEecCCCCceEEEEEE
Confidence            999999988432222 1122233334444433222 22333 357777788899887543 333433

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.97  E-value=6e-29  Score=200.44  Aligned_cols=218  Identities=24%  Similarity=0.328  Sum_probs=158.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+||||||+|+++|+.|+++|++|+|+||.+.+...++++.++++++++|+++|+++.+...........+.......
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            58999999999999999999999999999999888778899999999999999999999987766554444333211111


Q ss_pred             e-eEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEe---CCCcEEEccE
Q 044609           86 T-QELSYAGK-SGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIKAKV  157 (232)
Q Consensus        86 ~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~~~~a~~  157 (232)
                      . ...+.... ...+......++|..|.+.|.+.+.   +++++++++|+++..++   .. +.+++   .++++++||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~~-v~v~~~~~~~~~~~~adl  158 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG---NS-ITATIIRTNSVETVSAAY  158 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC---Cc-eEEEEEeCCCCcEEecCE
Confidence            1 11111111 1101222346899999999998763   67899999999998754   33 55554   3345899999


Q ss_pred             EEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCC-------CCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          158 LIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGH-------GLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ||+|||.+|.+|+.++...+.+.++.+|++.+......       +.......|++++..++++|++++..++++.+
T Consensus       159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~  235 (400)
T PRK06475        159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAI  235 (400)
T ss_pred             EEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEE
Confidence            99999999999999976666777888888875533211       11122455667777788999998876666543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.97  E-value=1.2e-28  Score=199.11  Aligned_cols=210  Identities=21%  Similarity=0.268  Sum_probs=152.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCc----CcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLR----ATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVF   77 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~   77 (232)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+. +.+.    ...++..+.++++++|+++|+++.+.+. ..+...+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   82 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME   82 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence            4689999999999999999999999999999996 3221    2347788999999999999999998764 56666666


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      ++....  .....+.......+...+.+.+..+.+.|.+.+.   +++++++++|++++.++   .. +.|++.+|++++
T Consensus        83 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~  156 (405)
T PRK08850         83 VWEQDS--FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE---SE-AWLTLDNGQALT  156 (405)
T ss_pred             EEeCCC--CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC---Ce-EEEEECCCCEEE
Confidence            654321  2222222111100223557888888888887653   68999999999998764   33 778888999999


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV  221 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  221 (232)
                      ||+||+|||.+|.+|+.++.+.+. .+++.++.+.+..+.+.  +....+++.++.+++++|++++..
T Consensus       157 a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~g~~~~lp~~~~~~  222 (405)
T PRK08850        157 AKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPH--NSVARQIFTPQGPLAFLPMSEPNM  222 (405)
T ss_pred             eCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCC--CCEEEEEEcCCCceEEEECCCCCe
Confidence            999999999999999999877443 35666777766544322  222233444444578899987543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.97  E-value=1.4e-28  Score=197.99  Aligned_cols=218  Identities=21%  Similarity=0.288  Sum_probs=154.8

Q ss_pred             CCc-ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-----cceeeeecccHHHHHHHcCChHHHHhh-ccCc
Q 044609            1 MEM-VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-----TGAALTLSPNAWLALDALGVSHKLTSV-YAPA   73 (232)
Q Consensus         1 m~~-~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~   73 (232)
                      |.+ +.+||+||||||+|+++|+.|+++|++|+||||.+.+..     ..+...+.+++.++|+++|+++.+.+. ..+.
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY   80 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence            444 458999999999999999999999999999999875431     235578899999999999999998763 5556


Q ss_pred             eeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc
Q 044609           74 KRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST  151 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~  151 (232)
                      ....++.........++......  ....+.+++..+.+.|.+.+.  +++++++++|++++.++   .. +.+++.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~g~  154 (392)
T PRK08773         81 RRMRVWDAGGGGELGFDADTLGR--EQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA---DR-VRLRLDDGR  154 (392)
T ss_pred             cEEEEEeCCCCceEEechhccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC---Ce-EEEEECCCC
Confidence            55555443222222232221111  233567899999999988764  78999999999998764   34 778888888


Q ss_pred             EEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609          152 IIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN  226 (232)
Q Consensus       152 ~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (232)
                      ++.||+||+|||.+|.+|+.++.+.+.. +.+..+...+....+. ....+..|..++. ++++|++++..++++.
T Consensus       155 ~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~lP~~~~~~~~~w~  228 (392)
T PRK08773        155 RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPH-QATAWQRFLPTGP-LALLPFADGRSSIVWT  228 (392)
T ss_pred             EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCC-CCEEEEEeCCCCc-EEEEECCCCceEEEEE
Confidence            9999999999999999999998775432 2333343333332222 1233445555554 7899999887655443

>PRK09126 hypothetical protein; Provisional

Probab=99.97  E-value=9.3e-29  Score=199.17  Aligned_cols=217  Identities=19%  Similarity=0.272  Sum_probs=154.3

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-----CcceeeeecccHHHHHHHcCChHHHHhhc-cCceee
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-----ATGAALTLSPNAWLALDALGVSHKLTSVY-APAKRV   76 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~   76 (232)
                      ||++||+||||||+|+++|+.|+++|++|+|+||.+.+.     ..++++.+.+++.+.|+++|+++.+.... .+....
T Consensus         1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~   80 (392)
T PRK09126          1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA   80 (392)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence            457999999999999999999999999999999998642     34567788899999999999998876543 344455


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII  153 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~  153 (232)
                      .++.....  ..+.+...........+.+++..+.+.|.+.+   .+++++++++|++++.++   .. +.|.+.+|+++
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~  154 (392)
T PRK09126         81 KVLNGRSP--FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD---DG-AQVTLANGRRL  154 (392)
T ss_pred             EEEcCCCC--ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---Ce-EEEEEcCCCEE
Confidence            55432221  22233211110022345678888888888765   378999999999998764   33 67888889899


Q ss_pred             EccEEEecCCCchhhhhhhcCCCC-cccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          154 KAKVLIGCDGVHSMVAQWLGLSES-INSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       154 ~a~~vV~A~G~~S~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      .||+||+|||.+|.+|+.++.+.. ..+++..+...+....  +.......+++.+..++++|++++.+++.+.+
T Consensus       155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~  227 (392)
T PRK09126        155 TARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--PHHHTAWEWFGYGQTLALLPLNGHLSSLVLTL  227 (392)
T ss_pred             EeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--CCCCEEEEEecCCCCeEEeECCCCCEEEEEEC
Confidence            999999999999999999976533 3344444444333222  11223345566666788999999877666544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.97  E-value=1.2e-28  Score=198.16  Aligned_cols=216  Identities=20%  Similarity=0.239  Sum_probs=156.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+|.++||+||||||+|+++|+.|+++|++|+||||.+.+.. .++..+.+++.++|+++|+++.+.....+.....++.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~   81 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD   81 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence            788889999999999999999999999999999999876533 4667788889999999999999888777777777765


Q ss_pred             cCCCcee--EEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           81 LGTGATQ--ELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                      .......  ...+...........+.+++..+.+.|.+.+.  +...+++++|++++.++   +. +.|++.+|++++||
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~a~  157 (388)
T PRK07494         82 ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE---DE-VTVTLADGTTLSAR  157 (388)
T ss_pred             CCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC---Ce-EEEEECCCCEEEEe
Confidence            4322111  12222111000233567899999999988764  22338899999998764   34 77888888899999


Q ss_pred             EEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEE
Q 044609          157 VLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYW  223 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  223 (232)
                      +||+|||.+|.+|+.++.+... .+++.++.+.+..+.++ ....+..+...+. ++++|+++++..+
T Consensus       158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~g~-~~~~Pl~~~~~~~  223 (388)
T PRK07494        158 LVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPH-QNVSTEFHTEGGP-FTQVPLPGRRSSL  223 (388)
T ss_pred             EEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCC-CCEEEEEeCCCCc-EEEEECCCCcEEE
Confidence            9999999999999999877443 34566666555543322 1223444454554 7789999876433

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.97  E-value=2e-28  Score=204.00  Aligned_cols=220  Identities=21%  Similarity=0.287  Sum_probs=158.3

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ++.+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.....+.....++.. 
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-   86 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA-   86 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC-
Confidence            3468999999999999999999999999999999998877788999999999999999999998887777666666543 


Q ss_pred             CCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeC--CC--cEEE
Q 044609           83 TGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DS--TIIK  154 (232)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g--~~~~  154 (232)
                      .+.. ..++.........+....+++..+.+.|.+.+   ++++++++++|+++++++   +. +.+++.  +|  .+++
T Consensus        87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~---~~-v~v~~~~~~G~~~~i~  162 (538)
T PRK06183         87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD---DG-VTVTLTDADGQRETVR  162 (538)
T ss_pred             CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC---Ce-EEEEEEcCCCCEEEEE
Confidence            3333 33432111110022335678888888888765   378999999999998875   33 555554  56  4799


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ||+||+|||.+|.+|+.++...+.......|... +..............+++++..+.++|++++..+|.+..
T Consensus       163 ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~  236 (538)
T PRK06183        163 ARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML  236 (538)
T ss_pred             EEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence            9999999999999999998765544333333321 112211111223345566666688899999887776554

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.97  E-value=3.2e-28  Score=196.33  Aligned_cols=218  Identities=26%  Similarity=0.338  Sum_probs=162.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+ +..||+||||||+|+++|..|++.|++|+|+||.+.+...++++.+++++.++|+++|+.+.+.........+.++.
T Consensus         1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            66 56899999999999999999999999999999999888888999999999999999999998887766666666655


Q ss_pred             cCCCce-eEEeccCCC-CCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609           81 LGTGAT-QELSYAGKS-GRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA  155 (232)
Q Consensus        81 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a  155 (232)
                      ...+.. ..+++.... ..+......++|..+.+.|.+.+.   +++++++++|+++..++   .. +.+.+.+|+++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a  155 (396)
T PRK08163         80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---DG-VTVFDQQGNRWTG  155 (396)
T ss_pred             CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC---Cc-eEEEEcCCCEEec
Confidence            433333 333332110 001223456899999999998764   47899999999998653   34 7788889989999


Q ss_pred             cEEEecCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCCC--ccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609          156 KVLIGCDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHGL--NQDIRQFVGVGFRAGFIPLNDRDVYWF  224 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~  224 (232)
                      |+||+|||.+|.+|+.+ +. .+.+.++..+++.+...+....  ......+.+++.+++++|++++..+.+
T Consensus       156 d~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~  226 (396)
T PRK08163        156 DALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNL  226 (396)
T ss_pred             CEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEE
Confidence            99999999999999987 44 4455667777776654322111  112334556666788899988765433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.97  E-value=2.4e-28  Score=198.16  Aligned_cols=214  Identities=21%  Similarity=0.252  Sum_probs=149.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC--cceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA--TGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.+..  .++++.+.+++.++|+++|+++++.....+.....++..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            358999999999999999999999999999999987643  467889999999999999999998887777766666542


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCC-C--cEEEc
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-S--TIIKA  155 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g--~~~~a  155 (232)
                      .......+.......  ....+...+..+.+.|.+.+.   +++++++++|++++.++   +. +.|++.+ +  .+++|
T Consensus        97 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~a  170 (415)
T PRK07364         97 DYPGVVKFQPTDLGT--EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ---DA-ATVTLEIEGKQQTLQS  170 (415)
T ss_pred             CCCceeeeccccCCC--CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-eEEEEccCCcceEEee
Confidence            211112222211111  122334455578888877653   68999999999998764   33 5566653 2  36999


Q ss_pred             cEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609          156 KVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  225 (232)
                      |+||+|||.+|.+|+.++.....+. ...++.+.+..+... ....+..|+..+. ++++|.+++..++++
T Consensus       171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~p~~~~~~~~~~  239 (415)
T PRK07364        171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPH-NDIAYERFWPSGP-FAILPLPGNRCQIVW  239 (415)
T ss_pred             eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCC-CCEEEEEecCCCC-eEEeECCCCCEEEEE
Confidence            9999999999999999987654432 234444444433321 1233445666665 778999988765543

>PRK08244 hypothetical protein; Provisional

Probab=99.97  E-value=2.1e-28  Score=202.14  Aligned_cols=211  Identities=18%  Similarity=0.202  Sum_probs=153.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.++++++++|+++|+.+.+.+...+.....+.... .
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-~   80 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD-T   80 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc-c
Confidence            489999999999999999999999999999999988778899999999999999999999998877666655443211 1


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--CCC-cEEEccEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS-TIIKAKVLI  159 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g-~~~~a~~vV  159 (232)
                         .+++...... ......+++..+.+.|.+.+.  ++++++++++++++.++   +. +.+++  .+| .+++||+||
T Consensus        81 ---~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~a~~vV  152 (493)
T PRK08244         81 ---RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG---DG-VEVVVRGPDGLRTLTSSYVV  152 (493)
T ss_pred             ---cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC---Ce-EEEEEEeCCccEEEEeCEEE
Confidence               1222211111 223456888999998887664  78999999999998764   33 44444  356 479999999


Q ss_pred             ecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609          160 GCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN  226 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (232)
                      +|||.+|.+|+.++++.++. +.+..+.+.+......  ......++.++.+++++|++++..++.+.
T Consensus       153 gADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~P~~~~~~~~~~~  218 (493)
T PRK08244        153 GADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP--PSSVLSLCTREGGVMIVPLSGGIYRVLII  218 (493)
T ss_pred             ECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCC--CcceeEEEeCCceEEEEECCCCeEEEEEE
Confidence            99999999999998776543 2334444444333221  22233445555568899999887665543

>PRK06847 hypothetical protein; Provisional

Probab=99.97  E-value=2.9e-28  Score=195.20  Aligned_cols=219  Identities=27%  Similarity=0.383  Sum_probs=164.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |. +..||+||||||+|+++|+.|++.|++|+|+||.+.+...+.++.+++++.+.|+++|+.+.+.+...+.....++.
T Consensus         1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            66 35799999999999999999999999999999998887788999999999999999999999888777776666654


Q ss_pred             cCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           81 LGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                      . .+.. ..++.....+...+....+.|..+.+.|.+.+.  +++++++++|++++.++   .. +.+.+.+|+++.||+
T Consensus        80 ~-~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~  154 (375)
T PRK06847         80 P-DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD---DG-VTVTFSDGTTGRYDL  154 (375)
T ss_pred             C-CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---CE-EEEEEcCCCEEEcCE
Confidence            3 2332 232222111100123346789999999988764  78999999999998763   34 778888999999999


Q ss_pred             EEecCCCchhhhhhh-cCC-CCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          158 LIGCDGVHSMVAQWL-GLS-ESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       158 vV~A~G~~S~~r~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      ||+|||.+|.+|+.+ +.. .+.+.+...|.+.+..+..  . .....+.+++..+.++|.+++..++++...
T Consensus       155 vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  224 (375)
T PRK06847        155 VVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE--V-DRSLMYLGPTTKAGVVPLSEDLMYLFVTEP  224 (375)
T ss_pred             EEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC--c-cceEEEeCCCcEEEEEcCCCCeEEEEEecc
Confidence            999999999999887 543 4556677777665543321  1 223455666677888999988877666543

>PRK07190 hypothetical protein; Provisional

Probab=99.97  E-value=3.8e-28  Score=198.99  Aligned_cols=219  Identities=21%  Similarity=0.280  Sum_probs=154.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |++..+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+.++++|+++|+++.+.....+......+.
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            77788999999999999999999999999999999999887788999999999999999999999887766665444332


Q ss_pred             cCCCce-eEE-e-ccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609           81 LGTGAT-QEL-S-YAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA  155 (232)
Q Consensus        81 ~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a  155 (232)
                        .+.. ... . +....+...+....+.+..+.+.|.+.+.  +++++++++|++++.++   +. +.+.+.+|++++|
T Consensus        81 --~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~---~~-v~v~~~~g~~v~a  154 (487)
T PRK07190         81 --NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ---AG-CLTTLSNGERIQS  154 (487)
T ss_pred             --CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC---Ce-eEEEECCCcEEEe
Confidence              2222 110 0 11111111222345778888888877654  79999999999998875   33 5666778889999


Q ss_pred             cEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609          156 KVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  225 (232)
                      ++||+|||.+|.+|+.++++.++......|... .......+..+....+..+...++++|.+++..++++
T Consensus       155 ~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~  225 (487)
T PRK07190        155 RYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYV  225 (487)
T ss_pred             CEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEE
Confidence            999999999999999999887765443333322 2222211111222233334444777899887655443

>PRK06184 hypothetical protein; Provisional

Probab=99.97  E-value=3e-28  Score=201.56  Aligned_cols=214  Identities=18%  Similarity=0.221  Sum_probs=152.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+...+......+.. .
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~-~   80 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD-D   80 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC-C
Confidence            358999999999999999999999999999999998877788999999999999999999999887776665555432 2


Q ss_pred             CceeEEeccC----CCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCcEEE
Q 044609           84 GATQELSYAG----KSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIK  154 (232)
Q Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~~~~  154 (232)
                      +....+.+..    ......+....+.+..+.+.|.+.+.  +++++++++|++++.++   +. +.+++   .++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~i~  156 (502)
T PRK06184         81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA---DG-VTARVAGPAGEETVR  156 (502)
T ss_pred             ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---Cc-EEEEEEeCCCeEEEE
Confidence            2222222211    01100123456788888888888764  78999999999998764   33 55555   4566899


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCCCCccceeEEEecC-eEEEEEEcCCCeEEEE
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGHGLNQDIRQFVGVG-FRAGFIPLNDRDVYWF  224 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~  224 (232)
                      ||+||+|||.+|.+|+.+++...+....  ..+.+.+.....  ....+..|..++ .++.++|++++..+++
T Consensus       157 a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  227 (502)
T PRK06184        157 ARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL--DRDAWHQWPDGDMGMIALCPLPGTDLFQI  227 (502)
T ss_pred             eCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC--CCcceEEccCCCCcEEEEEEccCCCeEEE
Confidence            9999999999999999999876654432  223332322221  123344555443 5677899987654433

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.97  E-value=2.8e-28  Score=197.05  Aligned_cols=217  Identities=19%  Similarity=0.268  Sum_probs=149.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--------cCcceeeeecccHHHHHHHcCChHHHHhh-ccCcee
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--------RATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKR   75 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~   75 (232)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+..        ....++..+.++++++|+++|+++.+.+. ..+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            489999999999999999999999999999998631        11235678899999999999999988754 455566


Q ss_pred             eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609           76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII  153 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~  153 (232)
                      ..++... +. ...++.......+...+.+++..+.+.|.+.+.  ++++++++++++++.++   +. +.|++.+|+++
T Consensus        82 ~~~~~~~-~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~  155 (405)
T PRK05714         82 MQVWDGS-GT-GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG---DD-WLLTLADGRQL  155 (405)
T ss_pred             EEEEcCC-CC-ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEE
Confidence            6655432 22 223333211100223467888899988887764  68999999999998764   34 77888899899


Q ss_pred             EccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCC--eEEEEEEecC
Q 044609          154 KAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDR--DVYWFLNRYS  229 (232)
Q Consensus       154 ~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~  229 (232)
                      +||+||+|||.+|.+|+.++.+.+.+ +.+.++...+..+.+.. ...+..|.+++ +++++|++++  ..+..+.|..
T Consensus       156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~P~~~~~~~~~~~~~~~~  232 (405)
T PRK05714        156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHR-ATAWQRFTDDG-PLAFLPLERDGDEHWCSIVWST  232 (405)
T ss_pred             EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCC-CEEEEEcCCCC-CeEEeeCCCCCCCCeEEEEEEC
Confidence            99999999999999999998764432 22333333333332221 23344555555 5889999753  2233344543

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=6.1e-29  Score=190.97  Aligned_cols=207  Identities=35%  Similarity=0.575  Sum_probs=158.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +.+|+|||||++|+++|+.|+|+|++|+|+|+.+.++..+.++.++-+++++|+.+++.+.+.+...++.........++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999998877776777


Q ss_pred             ce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCc------eEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           85 AT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSS------KIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~------~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                      +. ..+++.....   +......|..+.+.|.++.+..+++++.      .+..++..   +.. ..+++.||.++++|+
T Consensus        82 ~~~~~~~~~~~~~---~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~---~~~-~~v~l~~g~~~~~dl  154 (420)
T KOG2614|consen   82 KEVSRILYGEPDE---YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETL---GKK-LVVHLSDGTTVKGDL  154 (420)
T ss_pred             CeeEecccCCchH---HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeec---ccc-cceecCCCcEEEeeE
Confidence            75 6666653321   1233455667777777777755566554      33333332   343 667889999999999


Q ss_pred             EEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609          158 LIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD  220 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (232)
                      +|+|||++|.+|+.++...|.+.++.+|++...++...++......+.++.  +.+.|.+..+
T Consensus       155 ligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~--~~~~~~~~~~  215 (420)
T KOG2614|consen  155 LIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNG--LHSWPRPGFH  215 (420)
T ss_pred             EEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCe--EEEcccCCce
Confidence            999999999999999888899999999999887777665533333333333  4444444444

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.97  E-value=1.1e-27  Score=193.58  Aligned_cols=213  Identities=21%  Similarity=0.316  Sum_probs=156.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +||+||||||+|+++|+.|+++|  ++|+|+||.+...  ..+++..+.+++.++|+++|+++.+.....+.....++..
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            69999999999999999999995  9999999987643  3468999999999999999999999887777777766653


Q ss_pred             CCCce---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           82 GTGAT---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                      .....   ....+........+..+.++|..+.+.|.+.+.  +++++++++|++++.++   .. +.+++.+|.++.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad  157 (403)
T PRK07333         82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD---EG-VTVTLSDGSVLEAR  157 (403)
T ss_pred             CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeC
Confidence            32221   112332211100233457899999999998765  78999999999998764   34 77888889899999


Q ss_pred             EEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609          157 VLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF  224 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  224 (232)
                      +||+|||.+|.+|+.++..... .+++.++.+.+...... .+.....+..++. ++++|++++..++.
T Consensus       158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~Pl~~~~~~~~  224 (403)
T PRK07333        158 LLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPH-GGRAEEHFLPAGP-FAILPLKGNRSSLV  224 (403)
T ss_pred             EEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCC-CCEEEEEeCCCCc-eEEeECCCCCeEEE
Confidence            9999999999999999876433 23445555544433321 1223344444454 78899999886543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.96  E-value=1.4e-27  Score=191.62  Aligned_cols=208  Identities=20%  Similarity=0.233  Sum_probs=144.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--cC----cceeeeecccHHHHHHHcCChHHHHhh-ccCceeeE
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RA----TGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVF   77 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~   77 (232)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+..  ..    ..+...++++++++|+++|+++.+... ..+...+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            489999999999999999999999999999987532  11    224568999999999999999988653 45555555


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      .+... .....+.......  ....+.+.+..+.+.|.+.+   ++++++++++|++++.++   +. +.+++.+|.+++
T Consensus        83 ~~~~~-~~~~~~~~~~~~~--~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~~  155 (384)
T PRK08849         83 TWEHP-ECRTRFHSDELNL--DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA---EG-NRVTLESGAEIE  155 (384)
T ss_pred             EEeCC-CceEEecccccCC--CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC---Ce-EEEEECCCCEEE
Confidence            44321 1112222111111  22235677777888887665   368999999999998764   34 778889999999


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV  221 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  221 (232)
                      ||+||+|||.+|.+|+.++.....+. .+.++.+.+....+ ..+..+..|+..++ ..++|++++..
T Consensus       156 ~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~-~~~~pl~~~~~  221 (384)
T PRK08849        156 AKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP-QQDITWQQFTPSGP-RSFLPLCGNQG  221 (384)
T ss_pred             eeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC-CCCEEEEEeCCCCC-EEEeEcCCCce
Confidence            99999999999999999987644432 33333333333222 22344566666666 45689987653

>PTZ00367 squalene epoxidase; Provisional

Probab=99.96  E-value=1.6e-27  Score=197.05  Aligned_cols=219  Identities=21%  Similarity=0.232  Sum_probs=154.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG-LRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+. ......|..+++++.++|+++|+++.+.....+..+..+++. 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~-  110 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDH-  110 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEEC-
Confidence            458999999999999999999999999999999862 222346778999999999999999998887777777766653 


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-----CCCeEEeCceEEEEEecCCCC---Cc-cEEEEeCC----
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-----PDDTIQFSSKIAAIDSQTLNG---SS-AAIINLGD----  149 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~i~~~~~v~~i~~~~~~g---~~-~~~v~~~~----  149 (232)
                      ++....+++..     ......+++..+.+.|.+.+     ++++++. .+|+++..++. +   .. .+.+...+    
T Consensus       111 ~G~~~~i~~~~-----~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~-~~~~~v~gV~~~~~~~~~~  183 (567)
T PTZ00367        111 KGKQVKLPYGA-----GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGP-GFSERAYGVEYTEAEKYDV  183 (567)
T ss_pred             CCCEEEecCCC-----CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccC-ccCCeeEEEEEecCCcccc
Confidence            33333333321     22345678888888887765     3778865 47888765431 1   01 14444443    


Q ss_pred             -------------------CcEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeE
Q 044609          150 -------------------STIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFR  210 (232)
Q Consensus       150 -------------------g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (232)
                                         ++++.||+||+|||.+|.+|+.++...+.+.....+++........+.......+++++.+
T Consensus       184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gp  263 (567)
T PTZ00367        184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGP  263 (567)
T ss_pred             cccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCce
Confidence                               5689999999999999999999976555554555555543322222222333456677778


Q ss_pred             EEEEEcCCCeEEEEEEecCC
Q 044609          211 AGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       211 ~~~~p~~~~~~~~~~~~~~~  230 (232)
                      ++++|++++..++++.+..+
T Consensus       264 i~~yPl~~~~~r~lv~~~~~  283 (567)
T PTZ00367        264 ILSYRLDDNELRVLVDYNKP  283 (567)
T ss_pred             EEEEEcCCCeEEEEEEecCC
Confidence            99999999988877766543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.96  E-value=2.6e-27  Score=191.89  Aligned_cols=214  Identities=24%  Similarity=0.351  Sum_probs=153.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc----eeeEEEEc
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA----KRVFVTNL   81 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~   81 (232)
                      +|+|||||++||++|..|+++| ++|+|+||.+.....|.++.++++++++|+++|+.+.+.......    ....+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 699999999988888999999999999999999988876644221    22222221


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                      ..............   ......++|..|.+.|.+.+++..++++++|++++.++   +. +.+.+.+|.++.||+||+|
T Consensus        82 ~~~~~~~~~~~~~~---~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~vVgA  154 (414)
T TIGR03219        82 NGSDASYLGATIAP---GVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA---EE-VQVLFTDGTEYRCDLLIGA  154 (414)
T ss_pred             ecCccceeeeeccc---cCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC---Cc-EEEEEcCCCEEEeeEEEEC
Confidence            11111111111011   11123588999999999998877889999999998764   44 7888899999999999999


Q ss_pred             CCCchhhhhhhc------CCCCcccceeEEEEeeecCCC----------CCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609          162 DGVHSMVAQWLG------LSESINSGRSSVRGLAVFPHG----------HGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       162 ~G~~S~~r~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  225 (232)
                      ||.+|.+|+.+.      ...+.+.+..+|++++...+.          .........+++.+.+++++|++++..++++
T Consensus       155 DG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~  234 (414)
T TIGR03219       155 DGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVV  234 (414)
T ss_pred             CCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEE
Confidence            999999999872      123567788888887643221          0001123456677777888999998865544


Q ss_pred             Ee
Q 044609          226 NR  227 (232)
Q Consensus       226 ~~  227 (232)
                      .+
T Consensus       235 ~~  236 (414)
T TIGR03219       235 AF  236 (414)
T ss_pred             EE
Confidence            33

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.96  E-value=2.6e-27  Score=190.35  Aligned_cols=213  Identities=24%  Similarity=0.331  Sum_probs=154.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-----ceeeeecccHHHHHHHcCChHHHHh-hccCceeeEEEE
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-----GAALTLSPNAWLALDALGVSHKLTS-VYAPAKRVFVTN   80 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~   80 (232)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.++..     +++..+.+++.+.|+++|+++.+.+ ...+.....++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            7999999999999999999999999999999876432     4788999999999999999999887 666766666654


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                      ........++......  ....+.++|..+.+.|.+.+.  + ++++++++|+++..++   .. +.+++.+|+++.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~  154 (385)
T TIGR01988        81 GGSFGALHFDADEIGL--EALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS---DH-VELTLDDGQQLRARL  154 (385)
T ss_pred             CCCCceEEechhhcCC--CccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC---Ce-eEEEECCCCEEEeeE
Confidence            3221112222111111  233567999999999998764  3 8999999999998764   34 778888998999999


Q ss_pred             EEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          158 LIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ||+|||.+|.+|+.++.+.+. .+....+...+..+... ....+..+.++ ..++++|++++..++.+..
T Consensus       155 vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~  223 (385)
T TIGR01988       155 LVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH-QGTAWERFTPT-GPLALLPLPDNRSSLVWTL  223 (385)
T ss_pred             EEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCC-CCEEEEEecCC-CCEEEeECCCCCeEEEEEC
Confidence            999999999999999865433 23344444444433221 12223334444 4578899999876655543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07538 hypothetical protein; Provisional

Probab=99.96  E-value=7e-27  Score=189.23  Aligned_cols=214  Identities=25%  Similarity=0.352  Sum_probs=152.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.+...+.++.++++++++|+++|+.+.+.....+...+.++.. .+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-~g~~   80 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-HGQR   80 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC-CCCE
Confidence            799999999999999999999999999999988877889999999999999999999998877776666666543 2332


Q ss_pred             -eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---C-CeEEeCceEEEEEecCCCCCccEEEEeCCC-----cEEEcc
Q 044609           87 -QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDS-----TIIKAK  156 (232)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-----~~~~a~  156 (232)
                       ...+.....++ ....+.++|..|.+.|.+.+.   + .+++++++|++++.+++  .  +.+.+.++     ++++||
T Consensus        81 ~~~~~~~~~~~~-~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~~~~~~~~~g~~~~~~ad  155 (413)
T PRK07538         81 IWSEPRGLAAGY-DWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TVVFLGDRAGGDLVSVRGD  155 (413)
T ss_pred             EeeccCCcccCC-CCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEeccCCCccceEEee
Confidence             22111111111 223456999999999987752   3 46999999999987642  2  33444332     489999


Q ss_pred             EEEecCCCchhhhhhhcCC--CCcccceeEEEEeeecCCCCCCccceeEEEe-cCeEEEEEEcCCC-------eEEEEEE
Q 044609          157 VLIGCDGVHSMVAQWLGLS--ESINSGRSSVRGLAVFPHGHGLNQDIRQFVG-VGFRAGFIPLNDR-------DVYWFLN  226 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~  226 (232)
                      +||+|||.+|.+|+.+...  .+.+.+...|++....+...  ......+++ ++..+.++|+.++       .+.|.+.
T Consensus       156 lvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~  233 (413)
T PRK07538        156 VLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAE  233 (413)
T ss_pred             EEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEE
Confidence            9999999999999988533  45566777777765544321  122223333 3456888998763       4556655


Q ss_pred             ec
Q 044609          227 RY  228 (232)
Q Consensus       227 ~~  228 (232)
                      ..
T Consensus       234 ~~  235 (413)
T PRK07538        234 VR  235 (413)
T ss_pred             Ec
Confidence            43

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.96  E-value=2.3e-27  Score=190.53  Aligned_cols=211  Identities=24%  Similarity=0.319  Sum_probs=151.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCc----ceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRAT----GAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~----~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.+...    +++..+.+++.+.|+++|+.+.+.....+.....+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 999999999876443    46789999999999999999988776666665554432


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      .......+.......  ....+.++|..|.+.|.+.+.   +++++++++|+++..++   .. +.+.+.+|+++.||+|
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v  154 (382)
T TIGR01984        81 GHFGATHLRASEFGL--PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ---DY-VRVTLDNGQQLRAKLL  154 (382)
T ss_pred             CCCceEEechhhcCC--CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEeeEE
Confidence            111111121111111  233567999999999998764   68999999999998764   33 7788888889999999


Q ss_pred             EecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCC-eEEEEE
Q 044609          159 IGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDR-DVYWFL  225 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~  225 (232)
                      |+|||.+|.+|+.++.+.+. .+++.++...+....+. ....+..+..++ .++++|++++ .+.+++
T Consensus       155 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~  221 (382)
T TIGR01984       155 IAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH-QGCAFERFTPHG-PLALLPLKDNYRSSLVW  221 (382)
T ss_pred             EEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC-CCEEEEeeCCCC-CeEECcCCCCCCEEEEE
Confidence            99999999999999866433 34455665554433222 122333344444 4778999988 544433

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07236 hypothetical protein; Provisional

Probab=99.96  E-value=4.4e-27  Score=188.88  Aligned_cols=201  Identities=23%  Similarity=0.291  Sum_probs=147.1

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      |+.++|+|||||++|+++|..|++.|++|+|+||.+.+ ...+.++.+.+++.++|+++|+.+.. ....+.....++. 
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~-   81 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLD-   81 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEe-
Confidence            44589999999999999999999999999999998754 34577889999999999999997754 3344444444433 


Q ss_pred             CCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           82 GTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      ..+.. ...+.         ......+..+.+.|.+.+++.+++++++|++++.++   +. +.+.+.+|++++||+||+
T Consensus        82 ~~g~~~~~~~~---------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vIg  148 (386)
T PRK07236         82 RDGRVVQRRPM---------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG---DR-VTARFADGRRETADLLVG  148 (386)
T ss_pred             CCCCEeeccCC---------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEE
Confidence            22322 11111         111346788889998888778899999999998764   44 778899999999999999


Q ss_pred             cCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCC-----CccceeEEEecCeEEEEEEcCC
Q 044609          161 CDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHG-----LNQDIRQFVGVGFRAGFIPLND  218 (232)
Q Consensus       161 A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~  218 (232)
                      |||.+|.+|+.+ +...+.+.+..+|++++.......     ....+..+.+++..+.++|+++
T Consensus       149 ADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (386)
T PRK07236        149 ADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG  212 (386)
T ss_pred             CCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence            999999999987 333556777778877644221111     1223455567776787888764

>PRK06185 hypothetical protein; Provisional

Probab=99.96  E-value=4.3e-27  Score=190.37  Aligned_cols=220  Identities=20%  Similarity=0.261  Sum_probs=149.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVFVT   79 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~   79 (232)
                      |..+++||+||||||+|+++|+.|+++|++|+|+|+.+......++..+.+.+.+.|+++|+++.+.+. ..+...+.++
T Consensus         2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~   81 (407)
T PRK06185          2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE   81 (407)
T ss_pred             CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence            344679999999999999999999999999999999876544557889999999999999999987763 3345555554


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc-EEE
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST-IIK  154 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~-~~~  154 (232)
                      . ........++...... ......+.+..+.+.|.+.+   ++++++++++|+++..++  +.. .+.+...+|+ +++
T Consensus        82 ~-~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~  157 (407)
T PRK06185         82 I-GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIR  157 (407)
T ss_pred             E-CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEE
Confidence            3 2222233344322211 22345688889999888765   378999999999998764  332 1234445664 799


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCC-ccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGL-NQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  230 (232)
                      ||+||+|||.+|.+|+.++.+.+... ......  +..+..... ...+. ++.++..++++|.+ +.  +.+.|..+
T Consensus       158 a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~g~~~llP~~-~~--~~i~~~~~  229 (407)
T PRK06185        158 ADLVVGADGRHSRVRALAGLEVREFGAPMDVLW--FRLPREPDDPESLMG-RFGPGQGLIMIDRG-DY--WQCGYVIP  229 (407)
T ss_pred             eCEEEECCCCchHHHHHcCCCccccCCCceeEE--EecCCCCCCCcccce-EecCCcEEEEEcCC-Ce--EEEEEEec
Confidence            99999999999999999987755432 222222  223322221 12344 44455558889997 54  34444433

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.96  E-value=1.9e-27  Score=189.01  Aligned_cols=210  Identities=27%  Similarity=0.377  Sum_probs=140.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce--eeEEEEcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK--RVFVTNLG   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~   82 (232)
                      ++||+||||||+|+++|..|+|+|++|+||||.+.+...+++..+.++++++|+++|+.+.+.....+..  ....+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            3799999999999999999999999999999999988888999999999999999999999888764433  22232220


Q ss_pred             CCce-------eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCc-
Q 044609           83 TGAT-------QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DST-  151 (232)
Q Consensus        83 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~-  151 (232)
                      .+..       ....+.....  ......+.|..|.+.|.+.++  ++++++++++++++.+++ +.. +.+... +|+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-~~~-~~~~~~~~g~~  156 (356)
T PF01494_consen   81 SDSRIWVENPQIREDMEIDTK--GPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD-GVT-VVVRDGEDGEE  156 (356)
T ss_dssp             TTSEEEEEEEEEEEECHSTSG--SSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT-EEE-EEEEETCTCEE
T ss_pred             CCccceeeecccceeeecccc--CCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc-ccc-cccccccCCce
Confidence            1111       1111111122  445667899999999999865  789999999999987752 222 333333 343 


Q ss_pred             -EEEccEEEecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCC-CCccceeEEEecCeEEEEEEcCC
Q 044609          152 -IIKAKVLIGCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGH-GLNQDIRQFVGVGFRAGFIPLND  218 (232)
Q Consensus       152 -~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~  218 (232)
                       +++||+||+|||.+|.+|+.++...+.....  ..+.......... ...+.+.....+...++++|+.+
T Consensus       157 ~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  227 (356)
T PF01494_consen  157 ETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLEN  227 (356)
T ss_dssp             EEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccC
Confidence             7899999999999999999998664433221  2222222211111 11222333344555568899988

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.96  E-value=7.8e-27  Score=196.44  Aligned_cols=221  Identities=16%  Similarity=0.169  Sum_probs=151.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .++||+||||||+||++|+.|++. |++|+||||.+.+...+++..++++++++|+++|+++.+.+...+.....++...
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            358999999999999999999995 9999999999888778899999999999999999999998888777766665432


Q ss_pred             CCceeEE----ecc-CCCCCCCCceeeeehHHHHHHHhhhCC--C--CeEEeCceEEEEEecCCCCCccEEEEeC-----
Q 044609           83 TGATQEL----SYA-GKSGRIGSGLRSVHRQSLLEALADELP--D--DTIQFSSKIAAIDSQTLNGSSAAIINLG-----  148 (232)
Q Consensus        83 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~i~~~~~~g~~~~~v~~~-----  148 (232)
                      ......+    .+. ...+........++|..+.+.|.+.+.  +  +.+.+++++++++.+++.+.. +.|++.     
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~-V~v~l~~~~~~  189 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP-VTVTLRRTDGE  189 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC-EEEEEEECCCC
Confidence            2111001    001 001100222356888899999988764  2  478899999999876431233 556553     


Q ss_pred             -CC--cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccce-eEEEecCeEEEEEEcCCCe-EE
Q 044609          149 -DS--TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQDI-RQFVGVGFRAGFIPLNDRD-VY  222 (232)
Q Consensus       149 -~g--~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~-~~  222 (232)
                       +|  ++++||+||+|||++|.+|+.++++..+......|... +......+..... .....++..++++|++++. ++
T Consensus       190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r  269 (634)
T PRK08294        190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVR  269 (634)
T ss_pred             CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEE
Confidence             35  48999999999999999999999877665444433221 1111111211111 1222344568899999885 44


Q ss_pred             EEE
Q 044609          223 WFL  225 (232)
Q Consensus       223 ~~~  225 (232)
                      +++
T Consensus       270 ~~~  272 (634)
T PRK08294        270 LYV  272 (634)
T ss_pred             EEE
Confidence            433

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.96  E-value=9.3e-27  Score=187.48  Aligned_cols=212  Identities=24%  Similarity=0.256  Sum_probs=151.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeecccHHHHHHHcCChHHHHhh-ccCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPNAWLALDALGVSHKLTSV-YAPA   73 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~   73 (232)
                      |+...+||+||||||+|+++|+.|+++|++|+|+|+.+....      ..+...+.+++.++|+++|+++.+... ..+.
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            777889999999999999999999999999999999864321      235678999999999999999987653 3444


Q ss_pred             eeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCC
Q 044609           74 KRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS  150 (232)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g  150 (232)
                      .....+....+.. .++......  +...+.++|..+.+.|.+.+   ++++++++++|+++..++   .. +.|.+.+|
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~--~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g  153 (391)
T PRK08020         81 RRLETWEWETAHV-VFDAAELKL--PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD---DG-WELTLADG  153 (391)
T ss_pred             ceEEEEeCCCCeE-EecccccCC--CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---Ce-EEEEECCC
Confidence            4444433323222 122111111  23356789999999998765   378999999999998764   33 77888888


Q ss_pred             cEEEccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeE
Q 044609          151 TIIKAKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDV  221 (232)
Q Consensus       151 ~~~~a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  221 (232)
                      .+++||+||+|||.+|.+|+.++..... .+.+.++.+.+..+.. +.+..+..|+..++ .+++|+.++..
T Consensus       154 ~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~~~~  223 (391)
T PRK08020        154 EEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP-PGDSTWQQFTPSGP-RAFLPLFDNWA  223 (391)
T ss_pred             CEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC-CCCEEEEEEcCCCC-EEEeECCCCcE
Confidence            8999999999999999999999866433 2334455555544332 22344556666665 56789987754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.96  E-value=1.4e-26  Score=186.82  Aligned_cols=216  Identities=22%  Similarity=0.314  Sum_probs=151.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCC-----cCcceeeeecccHHHHHHHcCChHHHHhhccCce
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGL-----RATGAALTLSPNAWLALDALGVSHKLTSVYAPAK   74 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~   74 (232)
                      |+.+||+||||||+|+++|+.|+++   |++|+|+||....     ...++++.+.+++.++|+++|+++.+.+...+..
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~   80 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT   80 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence            3568999999999999999999998   9999999995322     2235788999999999999999999888777666


Q ss_pred             eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCc
Q 044609           75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST  151 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~  151 (232)
                      ...+..........+.......  +...+.+.|..+.+.|.+.+   .+++++++++|+++..++   +. +.|++.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~~-~~v~~~~g~  154 (395)
T PRK05732         81 HIHVSDRGHAGFVRLDAEDYGV--PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ---GS-VRVTLDDGE  154 (395)
T ss_pred             EEEEecCCCCceEEeehhhcCC--CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---Ce-EEEEECCCC
Confidence            6554432111011111111111  22245688888888887755   368999999999998653   34 778888888


Q ss_pred             EEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609          152 IIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN  226 (232)
Q Consensus       152 ~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (232)
                      ++.+|+||+|||.+|.+|+.++...+.. .++..+...+..... +....+..+...+. ++++|.++++..+++.
T Consensus       155 ~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~p~~~g~~~~~~~  228 (395)
T PRK05732        155 TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFERFTEHGP-LALLPMSDGRCSLVWC  228 (395)
T ss_pred             EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEeecCCCC-EEEeECCCCCeEEEEE
Confidence            8999999999999999999998764433 344555544433322 11223444444454 7789999988655444

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.96  E-value=5.3e-26  Score=189.32  Aligned_cols=223  Identities=23%  Similarity=0.331  Sum_probs=155.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcc---eeeeecccHHHHHHHcCC--hHHHHhhccCce-ee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATG---AALTLSPNAWLALDALGV--SHKLTSVYAPAK-RV   76 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~---~~~~~~~~~~~~l~~~g~--~~~~~~~~~~~~-~~   76 (232)
                      +..+|+||||||+|+++|+.|+++|++|+|+||.+.. ...+   +++.++++++++|+++|+  .+.+.+...... .+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            3489999999999999999999999999999998632 2222   568999999999999985  455555444321 12


Q ss_pred             E-EEEcCCCce-eEEeccC-CCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609           77 F-VTNLGTGAT-QELSYAG-KSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII  153 (232)
Q Consensus        77 ~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~  153 (232)
                      . +.....+.. ..++... ......+....++|..|.+.|.+.+....++++++|++++.++   +. +.+.+.+|+++
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~---d~-VtV~~~dG~ti  235 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSG---DK-VTVVLENGQRY  235 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeC---CE-EEEEECCCCEE
Confidence            1 112122222 2222111 0000022345799999999999887544578899999998763   44 77889999899


Q ss_pred             EccEEEecCCCchhhhhhh-cCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609          154 KAKVLIGCDGVHSMVAQWL-GLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       154 ~a~~vV~A~G~~S~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  230 (232)
                      .+|+||+|||.+|.+|+.+ +...+.+.+..+|++.+...........+..+.+.+.++.+.|.+++..+|+.++..+
T Consensus       236 ~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p  313 (668)
T PLN02927        236 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP  313 (668)
T ss_pred             EcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence            9999999999999999987 6556677888888887655322111223455667777777788888877777655443

>PRK06996 hypothetical protein; Provisional

Probab=99.96  E-value=1.9e-26  Score=185.77  Aligned_cols=209  Identities=20%  Similarity=0.222  Sum_probs=149.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCce
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG----IKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAK   74 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g----~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~   74 (232)
                      |..+++||+||||||+|+++|+.|+++|    ++|+|+|+.+.+.  ...+++.+.+.+.++|+++|+++.   ...+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~   83 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE   83 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence            6667899999999999999999999987    4799999986442  345799999999999999999885   344455


Q ss_pred             eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC--
Q 044609           75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--  150 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--  150 (232)
                      ...++.........+.......  +...+.++|..+.+.|.+.+.  ++++++++++++++.+.   +. +.+++.++  
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~--~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~---~~-v~v~~~~~~g  157 (398)
T PRK06996         84 HIHVSQRGHFGRTLIDRDDHDV--PALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA---DG-VTLALGTPQG  157 (398)
T ss_pred             EEEEecCCCCceEEecccccCC--CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC---Ce-EEEEECCCCc
Confidence            5544432111112222222211  334668999999999998875  68899999999997653   44 77777754  


Q ss_pred             -cEEEccEEEecCCC-chhhhhhhcCCC-CcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe
Q 044609          151 -TIIKAKVLIGCDGV-HSMVAQWLGLSE-SINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD  220 (232)
Q Consensus       151 -~~~~a~~vV~A~G~-~S~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (232)
                       ++++||+||+|||. +|.+|+.++... ...+++.++++.+....+.+ ...+..|...|. ++++|++++.
T Consensus       158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~G~-~~~lp~~~~~  228 (398)
T PRK06996        158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRP-GWAWERFTHEGP-LALLPLGGPR  228 (398)
T ss_pred             ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCC-CEEEEEecCCCC-eEEeECCCCC
Confidence             58999999999997 577888887653 34567778877766543322 234555665565 7788998764

>PLN02985 squalene monooxygenase

Probab=99.96  E-value=2.7e-26  Score=188.87  Aligned_cols=218  Identities=17%  Similarity=0.176  Sum_probs=149.0

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhh-ccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~   81 (232)
                      ...+||+|||||++|+++|+.|+++|++|+|+||.......+.++.+.+++.+.|+++|+++.+... ..+..++..+. 
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~-  119 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK-  119 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE-
Confidence            3458999999999999999999999999999999876555667889999999999999999988764 33455555543 


Q ss_pred             CCCceeEEeccCCCC--CCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc--EE
Q 044609           82 GTGATQELSYAGKSG--RIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST--II  153 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~--~~  153 (232)
                       ++.....+++....  .+......++|..|.+.|.+.+.   ++++..+ +++++..++  +.. .+.+...+|+  ++
T Consensus       120 -~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~  195 (514)
T PLN02985        120 -DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTA  195 (514)
T ss_pred             -CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEE
Confidence             34333344442111  01233467899999999998763   6777765 577776553  332 1333345665  46


Q ss_pred             EccEEEecCCCchhhhhhhcCCCCc-ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          154 KAKVLIGCDGVHSMVAQWLGLSESI-NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       154 ~a~~vV~A~G~~S~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      .||+||+|||.+|.+|+.++.+.+. ......+   .......+.......+++++.+++++|++++..++.+...
T Consensus       196 ~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~  268 (514)
T PLN02985        196 LAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGY---ISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVL  268 (514)
T ss_pred             ECCEEEECCCCchHHHHHhccCCCcceeEeEEE---EEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEe
Confidence            7999999999999999999765432 2222222   2211111222333456677777889999998876666543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.95  E-value=4.4e-26  Score=183.43  Aligned_cols=213  Identities=21%  Similarity=0.284  Sum_probs=150.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-----cceeeeecccHHHHHHHcCChHHHHh-hccCceeeE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-----TGAALTLSPNAWLALDALGVSHKLTS-VYAPAKRVF   77 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~   77 (232)
                      +++||+||||||+|+++|+.|++.|++|+|+||.+.+..     ..+.+.+.++++++|+++|+++.+.. ...+.....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            468999999999999999999999999999999987643     23458899999999999999988754 334555555


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      +.....+   .+.+.......+...+.+++..+.+.|.+.+.  + ++++ +++|++++.++   +. +.|++.+|.+++
T Consensus        84 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~  155 (388)
T PRK07608         84 VFGDAHA---RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP---DA-ATLTLADGQVLR  155 (388)
T ss_pred             EEECCCc---eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC---Ce-EEEEECCCCEEE
Confidence            5432222   22222111111334567899999999988764  3 7777 99999998664   34 778888888899


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEE
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLN  226 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (232)
                      ||+||+|||.+|.+|+.++...+... ....+...+..+..  .......++.++..++++|++++.+++.+.
T Consensus       156 a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (388)
T PRK07608        156 ADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERP--HRGTAYQWFRDDGILALLPLPDGHVSMVWS  226 (388)
T ss_pred             eeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCC--CCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence            99999999999999999987644322 23334333333322  122334455666668899999998655443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.95  E-value=4.9e-26  Score=183.13  Aligned_cols=164  Identities=20%  Similarity=0.276  Sum_probs=124.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+.  ...++..+.+++.++|+++|+++.+.....+.....+++  
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~--   79 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRF--   79 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEE--
Confidence            5799999999999999999999999999999998642  233455689999999999999999988777777776654  


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKV  157 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~  157 (232)
                      .+....+++....+  ......+.+..+.+.|.+.+.  ++++++++++++++..+  ++. +.|++ .+|+  +++||+
T Consensus        80 ~g~~~~~~~~~~~~--~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~--~~~-~~V~~~~~G~~~~i~ad~  154 (392)
T PRK08243         80 DGRRHRIDLTELTG--GRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFD--SDR-PYVTYEKDGEEHRLDCDF  154 (392)
T ss_pred             CCEEEEeccccccC--CceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecC--CCc-eEEEEEcCCeEEEEEeCE
Confidence            33344455543222  222334567788877776543  78999999999997622  233 45555 4664  789999


Q ss_pred             EEecCCCchhhhhhhcCC
Q 044609          158 LIGCDGVHSMVAQWLGLS  175 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~  175 (232)
                      ||+|||.+|.+|+.++..
T Consensus       155 vVgADG~~S~vR~~~~~~  172 (392)
T PRK08243        155 IAGCDGFHGVSRASIPAG  172 (392)
T ss_pred             EEECCCCCCchhhhcCcc
Confidence            999999999999999754

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.95  E-value=1.2e-25  Score=187.82  Aligned_cols=215  Identities=16%  Similarity=0.205  Sum_probs=145.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+...+......++. .
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-~  100 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR-D  100 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC-C
Confidence            458999999999999999999999999999999998877888999999999999999999998877665544434332 2


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV  159 (232)
                      +....+++....+...+....+.+..+.+.|.+.+.   +++++++++|++++.++  +...+.+...++. +++||+||
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vV  178 (547)
T PRK08132        101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVI  178 (547)
T ss_pred             CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEE
Confidence            222333332211110222345788888888887653   68999999999998764  2211333334554 79999999


Q ss_pred             ecCCCchhhhhhhcCCCCcccc-eeEEEEeeecCCCCCCccceeEEE---ecCeEEEEEEcCCCeEE
Q 044609          160 GCDGVHSMVAQWLGLSESINSG-RSSVRGLAVFPHGHGLNQDIRQFV---GVGFRAGFIPLNDRDVY  222 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~  222 (232)
                      +|||.+|.+|+.++.+..+... ...+...+....+.+ ...+..+.   .++..+++.|.+++..+
T Consensus       179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (547)
T PRK08132        179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP-TERWFWFDPPFHPGQSVLLHRQPDNVWR  244 (547)
T ss_pred             ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC-CeeeEEEeccCCCCcEEEEEeCCCCeEE
Confidence            9999999999999887655432 222222222222211 11222221   23455666677776533

>PRK06126 hypothetical protein; Provisional

Probab=99.95  E-value=5.8e-26  Score=189.80  Aligned_cols=220  Identities=22%  Similarity=0.327  Sum_probs=148.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce---eeE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK---RVF   77 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---~~~   77 (232)
                      |+++++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+.+.+..   ...
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~   82 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA   82 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence            56677999999999999999999999999999999998887788899999999999999999999887765432   111


Q ss_pred             EEEcCCCce-eEEeccCCCC------------CCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCc
Q 044609           78 VTNLGTGAT-QELSYAGKSG------------RIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSS  141 (232)
Q Consensus        78 ~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~  141 (232)
                      +.....+.. ..+.+.....            ..+.....+.+..+.+.|.+.+   ++++++++++|+++..++  +. 
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~-  159 (545)
T PRK06126         83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DG-  159 (545)
T ss_pred             EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--Ce-
Confidence            222122322 3333321100            0012245678888999988765   368999999999998764  22 


Q ss_pred             cEEEEe---CCCc--EEEccEEEecCCCchhhhhhhcCCCCcccc-eeEEEEeeecCC---CCCCccceeEE-EecCeEE
Q 044609          142 AAIINL---GDST--IIKAKVLIGCDGVHSMVAQWLGLSESINSG-RSSVRGLAVFPH---GHGLNQDIRQF-VGVGFRA  211 (232)
Q Consensus       142 ~~~v~~---~~g~--~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~  211 (232)
                       +.+.+   .+|+  +++||+||+|||++|.+|+.+++...+... ...+...+..+.   ..+....+.+| ++++.+.
T Consensus       160 -v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~  238 (545)
T PRK06126        160 -VTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRG  238 (545)
T ss_pred             -EEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccE
Confidence             33433   3453  789999999999999999999877554432 222233333322   11222334444 3444555


Q ss_pred             EEEEcCCCeEEEE
Q 044609          212 GFIPLNDRDVYWF  224 (232)
Q Consensus       212 ~~~p~~~~~~~~~  224 (232)
                      .++|.+++..+++
T Consensus       239 ~~~~~~~~~~~~~  251 (545)
T PRK06126        239 VLVAIDGRDEWLF  251 (545)
T ss_pred             EEEEECCCCeEEE
Confidence            6667766554333

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.95  E-value=3e-25  Score=178.15  Aligned_cols=213  Identities=15%  Similarity=0.193  Sum_probs=140.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .+||+||||||+|+++|+.|+++|++|+|+||.+...  ...++..+.++++++|+++|+++.+...+.+.....+++  
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~--   79 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAF--   79 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEee--
Confidence            4799999999999999999999999999999998632  223444588999999999999999988777766666654  


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCc--EEEccE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DST--IIKAKV  157 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~--~~~a~~  157 (232)
                      .+....+++.....  ........+..+.+.|.+.+.  ++.++++++++.+...+  ++. ..|++. +|+  +++||+
T Consensus        80 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~--~~~-~~V~~~~~g~~~~i~adl  154 (390)
T TIGR02360        80 DGQRFRIDLKALTG--GKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLA--GDR-PYVTFERDGERHRLDCDF  154 (390)
T ss_pred             CCEEEEEeccccCC--CceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecC--CCc-cEEEEEECCeEEEEEeCE
Confidence            23334444443222  111223346677777777653  67899998888876533  233 455554 664  789999


Q ss_pred             EEecCCCchhhhhhhcCCCC-cccce--eEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCe-EEEEEEe
Q 044609          158 LIGCDGVHSMVAQWLGLSES-INSGR--SSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRD-VYWFLNR  227 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~  227 (232)
                      ||+|||.+|.+|+.++...+ .+.+.  ..|.+.+....  +.... ..+...+..+.++|+.++. .+|++..
T Consensus       155 vIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T TIGR02360       155 IAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVSHE-LIYSNHERGFALCSMRSATRSRYYVQV  225 (390)
T ss_pred             EEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCCCc-eEEEeCCCceEEEeccCCCcceEEEEc
Confidence            99999999999999865432 12222  23444433221  11122 2344555557777876433 2344433

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06834 hypothetical protein; Provisional

Probab=99.95  E-value=3.9e-25  Score=181.50  Aligned_cols=202  Identities=19%  Similarity=0.189  Sum_probs=142.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ++||+||||||+|+++|+.|+++|++|+||||.+.+. ...++..++++++++|+++|+++.+.+.........+..   
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~---   79 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA---   79 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee---
Confidence            4899999999999999999999999999999988654 345788899999999999999999876554432211100   


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                         ..+++...... .+....+.+..+.+.|.+.++  +++++++++|++++.++   +. +.+++.+|++++||+||+|
T Consensus        80 ---~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~---~~-v~v~~~~g~~i~a~~vVgA  151 (488)
T PRK06834         80 ---TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD---TG-VDVELSDGRTLRAQYLVGC  151 (488)
T ss_pred             ---EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEEEeCEEEEe
Confidence               11222111110 122346778889998888765  78999999999998874   34 6777788888999999999


Q ss_pred             CCCchhhhhhhcCCCCcccc-eeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcC-CCeE
Q 044609          162 DGVHSMVAQWLGLSESINSG-RSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLN-DRDV  221 (232)
Q Consensus       162 ~G~~S~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~  221 (232)
                      ||.+|.+|+.++++.+++.. +..+.+.+..+...    .+..+..+...+.+.|.+ ++..
T Consensus       152 DG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~  209 (488)
T PRK06834        152 DGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP----EWGVHRDALGIHAFGRLEDEGPV  209 (488)
T ss_pred             cCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC----CcceeeCCCceEEEeccCCCCeE
Confidence            99999999999988776543 33444444333221    121223333346677776 5543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.93  E-value=8.7e-25  Score=166.11  Aligned_cols=220  Identities=20%  Similarity=0.206  Sum_probs=164.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhcc-CceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYA-PAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~   81 (232)
                      +..+||||||||.+|.++|+.|+|.|.+|.||||+-....+--|..++|.+...|+++|+.+.++.... ...+..++. 
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk-  121 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK-  121 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe-
Confidence            345899999999999999999999999999999998776667789999999999999999999887554 344555543 


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeC--CCc--EEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DST--IIK  154 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g~--~~~  154 (232)
                       +++...++|+-......+.+..++..+|++.|++.+   +++++..+ .|.++.+++  +.. ..|+..  +|+  +..
T Consensus       122 -~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~--gvv-kGV~yk~k~gee~~~~  196 (509)
T KOG1298|consen  122 -DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE--GVV-KGVTYKNKEGEEVEAF  196 (509)
T ss_pred             -CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc--CeE-EeEEEecCCCceEEEe
Confidence             455555666533222255677899999999999876   47777766 566776654  443 555554  444  667


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecC
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS  229 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  229 (232)
                      |.+.|+|||.+|++|+.+-.+... ..-..+.|.+......+........+.+...+.++|++...+++.+-+..
T Consensus       197 ApLTvVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g  270 (509)
T KOG1298|consen  197 APLTVVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPG  270 (509)
T ss_pred             cceEEEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCc
Confidence            899999999999999998543221 13334666666555555556677778888889999999999888876654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.93  E-value=1.2e-23  Score=163.25  Aligned_cols=206  Identities=21%  Similarity=0.267  Sum_probs=135.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      |||+||||||+|+++|+.|++.|++|+|+||.+.++...++..+.+..++.+...+..     .........+.. ..+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-~~~~   74 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFS-PNGD   74 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEc-CCCc
Confidence            6999999999999999999999999999999987766667777888777776655321     111112222222 2222


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-CcEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-STIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~~~~a~~vV~A~  162 (232)
                      .......      ......++|..+.+.|.+.+.  +++++++++|+++..++  +.  +.+...+ +.+++||+||+|+
T Consensus        75 ~~~~~~~------~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~--~~~~~~~~~~~~~a~~vv~a~  144 (295)
T TIGR02032        75 SVEIPIE------TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DR--VVVIVRGGEGTVTAKIVIGAD  144 (295)
T ss_pred             EEEeccC------CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CE--EEEEEcCccEEEEeCEEEECC
Confidence            2111111      233567899999999998775  78999999999998764  23  4454443 4589999999999


Q ss_pred             CCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEe----cCeEEEEEEcCCCeEEEEEEe
Q 044609          163 GVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVG----VGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       163 G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      |.+|.+++.++...........+.+....+...........+.+    ++.+.+++|+++++..+.++.
T Consensus       145 G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~  213 (295)
T TIGR02032       145 GSRSIVAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGS  213 (295)
T ss_pred             CcchHHHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeee
Confidence            99999999887654222222233334443321111122333433    346788999999876565543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.93  E-value=3.3e-23  Score=166.63  Aligned_cols=208  Identities=24%  Similarity=0.248  Sum_probs=135.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCccee-eeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA-LTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +++|||+||||||||++||+.|++.|++|+|+||...++...++ ..+.+..++.+...   .... .........++..
T Consensus         1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~---~~~~-i~~~v~~~~~~~~   76 (396)
T COG0644           1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD---FDEE-IERKVTGARIYFP   76 (396)
T ss_pred             CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC---cchh-hheeeeeeEEEec
Confidence            46799999999999999999999999999999999988765444 45555444333222   1111 2222333333332


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                        +....+..+      ....+.++|..|.++|.+.+.  |++++.++++.++..++  +.. +.....++.+++|++||
T Consensus        77 --~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~-~~~~~~~~~e~~a~~vI  145 (396)
T COG0644          77 --GEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGV-VVGVRAGDDEVRAKVVI  145 (396)
T ss_pred             --CCceEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcE-EEEEEcCCEEEEcCEEE
Confidence              222222221      134778999999999998775  89999999999999875  332 44444444789999999


Q ss_pred             ecCCCchhhhhhhcCCCCcccce--eEEEEeeecCCCCCCccceeEE----EecCeEEEEEEcCCCeEEEEEEec
Q 044609          160 GCDGVHSMVAQWLGLSESINSGR--SSVRGLAVFPHGHGLNQDIRQF----VGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      +|||.+|.+++.++.. ...+..  ..+.-....+  .........+    ...+.+.|++|..++.....+...
T Consensus       146 ~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~  217 (396)
T COG0644         146 DADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVP--DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVL  217 (396)
T ss_pred             ECCCcchHHHHHhCCC-CCChhheeEEeEEEEecC--CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEe
Confidence            9999999999999877 211111  1122122233  1111112221    234667999999999877776643

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.91  E-value=6.8e-22  Score=160.56  Aligned_cols=210  Identities=17%  Similarity=0.201  Sum_probs=127.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+.+++||+||||||+|+++|+.|+++|++|+|+||.... ...++..+.   ...++++|+.+.+...  .+....+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~  108 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMIS  108 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEec
Confidence            4456799999999999999999999999999999998643 223444443   3667788887665432  223333332


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-------C-
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-------S-  150 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-------g-  150 (232)
                      . .+.  .+.+...... ......++|..|.+.|.+.+.  |++++.+ +++++....+.+.. +.|++.+       | 
T Consensus       109 p-~~~--~v~~~~~~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~  182 (450)
T PLN00093        109 P-SNV--AVDIGKTLKP-HEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGT  182 (450)
T ss_pred             C-Cce--EEEecccCCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCC
Confidence            1 111  2222211110 122335899999999998764  7888765 57777643211223 4454422       3 


Q ss_pred             -cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCccce-eEEEe----cCeEEEEEEcCCCeEEE
Q 044609          151 -TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDI-RQFVG----VGFRAGFIPLNDRDVYW  223 (232)
Q Consensus       151 -~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~----~~~~~~~~p~~~~~~~~  223 (232)
                       .+++||+||+|||.+|.+|+.++....  ....++...+..+.. ......+ ..+++    ++.+.|++|.++ .+..
T Consensus       183 ~~~v~a~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~V  259 (450)
T PLN00093        183 PKTLEVDAVIGADGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAV  259 (450)
T ss_pred             ccEEEeCEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEE
Confidence             479999999999999999999986531  111222222223321 1122222 33433    355789999995 4444


Q ss_pred             EE
Q 044609          224 FL  225 (232)
Q Consensus       224 ~~  225 (232)
                      .+
T Consensus       260 G~  261 (450)
T PLN00093        260 GT  261 (450)
T ss_pred             EE
Confidence            43

>PRK11445 putative oxidoreductase; Provisional

Probab=99.91  E-value=2.8e-22  Score=158.94  Aligned_cols=156  Identities=23%  Similarity=0.256  Sum_probs=110.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc----CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR----ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +||+||||||+|+++|..|+++ ++|+++||.+...    ...++..+++++.+.|+++|+.........+ .....   
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~---   76 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAV---   76 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-cccee---
Confidence            6999999999999999999999 9999999987643    2236788999999999999986321110000 00000   


Q ss_pred             CCCceeEEeccC-CCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEcc
Q 044609           82 GTGATQELSYAG-KSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAK  156 (232)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~  156 (232)
                           ..+++.. ....+......++|..|.+.|.+..+ ++++++++.+++++.++   +. +.|.+ .+|+  +++||
T Consensus        77 -----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~a~  147 (351)
T PRK11445         77 -----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED---DG-YHVIFRADGWEQHITAR  147 (351)
T ss_pred             -----eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC---CE-EEEEEecCCcEEEEEeC
Confidence                 1111111 00000222346899999999988654 78999999999998764   33 55654 5664  68999


Q ss_pred             EEEecCCCchhhhhhhcCC
Q 044609          157 VLIGCDGVHSMVAQWLGLS  175 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~  175 (232)
                      +||+|||.+|.+|+.++..
T Consensus       148 ~vV~AdG~~S~vr~~l~~~  166 (351)
T PRK11445        148 YLVGADGANSMVRRHLYPD  166 (351)
T ss_pred             EEEECCCCCcHHhHHhcCC
Confidence            9999999999999988654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.90  E-value=2.4e-21  Score=155.72  Aligned_cols=196  Identities=17%  Similarity=0.311  Sum_probs=123.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      |||+||||||+|+++|+.|+++|++|+|+|+. +.+  ..++..+.+   +.++++++.+.+...  .+....++.. .+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~--~~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~-~~   72 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI--KPCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISP-SR   72 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc--CcCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcC-CC
Confidence            79999999999999999999999999999998 332  234444444   567788887665432  3444554432 22


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC------C--cEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD------S--TIIK  154 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~------g--~~~~  154 (232)
                      .......+..    ......++|..|.+.|.+.+.  +++++.+ +|+++..++   .. +.+++.+      +  .++.
T Consensus        73 ~~~~~~~~~~----~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~~-~~v~~~~~~~~~~~~~~~i~  143 (388)
T TIGR02023        73 VPIKVTIPSE----DGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR---DG-VTLTYRTPKKGAGGEKGSVE  143 (388)
T ss_pred             ceeeeccCCC----CCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC---Ce-EEEEEEeccccCCCcceEEE
Confidence            2222222111    111235899999999998764  7888655 688987664   33 5555442      2  3799


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCcccee-EEE----ecCeEEEEEEcCCC
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDIR-QFV----GVGFRAGFIPLNDR  219 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~----~~~~~~~~~p~~~~  219 (232)
                      ||+||+|||.+|.+|+.++.+.+.. ...++...+..+.. ....++.. .++    .++.+.|++|.++.
T Consensus       144 a~~VI~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~  213 (388)
T TIGR02023       144 ADVVIGADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH  213 (388)
T ss_pred             eCEEEECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe
Confidence            9999999999999999998763221 11233333332221 11223322 232    23557899999854

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK10015 oxidoreductase; Provisional

Probab=99.89  E-value=3.9e-21  Score=155.79  Aligned_cols=169  Identities=22%  Similarity=0.296  Sum_probs=106.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (232)
                      |++.+|||+||||||+|+++|+.|+++|++|+||||.+.++... ++..+.....+.+. .++... ...........++
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~-~~~~~~-~~i~~~~~~~~~~   78 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII-PGFAAS-APVERKVTREKIS   78 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc-cccccc-CCccccccceeEE
Confidence            66667999999999999999999999999999999998775431 22222222222210 011100 0000111111122


Q ss_pred             EcCCCceeEEeccCCC-CCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           80 NLGTGATQELSYAGKS-GRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                      ....+....+++.... +......+.+.|..|.++|.+.+.  +++++.+++|+++..++  +.. ..+. .++.++.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v-~~v~-~~~~~i~A~  154 (429)
T PRK10015         79 FLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKV-TGVQ-AGDDILEAN  154 (429)
T ss_pred             EEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEE-EEEE-eCCeEEECC
Confidence            2222222223332111 100223568899999999988764  78999999999988654  332 3344 345579999


Q ss_pred             EEEecCCCchhhhhhhcCC
Q 044609          157 VLIGCDGVHSMVAQWLGLS  175 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~  175 (232)
                      +||+|+|.+|.+++.++..
T Consensus       155 ~VI~AdG~~s~v~~~lg~~  173 (429)
T PRK10015        155 VVILADGVNSMLGRSLGMV  173 (429)
T ss_pred             EEEEccCcchhhhcccCCC
Confidence            9999999999999988764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.88  E-value=1.5e-20  Score=152.48  Aligned_cols=175  Identities=22%  Similarity=0.323  Sum_probs=110.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHhhccCce----e
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTSVYAPAK----R   75 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~   75 (232)
                      |+..+|||+||||||+|+++|+.|+++|++|+||||.+.++... .+-.+....   ++++  ...+... .+..    .
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~---~e~l--~~~~~~~-~~~~~~~~~   74 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHS---LEHI--IPGFADS-APVERLITH   74 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhh---HHHH--hhhhhhc-Ccccceeee
Confidence            66667999999999999999999999999999999998775321 122222222   2222  1111111 1111    0


Q ss_pred             eEEEEcCCCceeEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609           76 VFVTNLGTGATQELSYAGK-SGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI  152 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~  152 (232)
                      ....+........+++... ........+.+.|..|.++|.+.+.  |++++.+++|+++..++  +.  +.+...++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~--v~~v~~~g~~  150 (428)
T PRK10157         75 EKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GK--VVGVEADGDV  150 (428)
T ss_pred             eeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CE--EEEEEcCCcE
Confidence            0111111111222222211 1111234567899999999998774  88999999999998754  33  3333456778


Q ss_pred             EEccEEEecCCCchhhhhhhcCCCCcccceeEE
Q 044609          153 IKAKVLIGCDGVHSMVAQWLGLSESINSGRSSV  185 (232)
Q Consensus       153 ~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~  185 (232)
                      +.|++||+|||.+|.+++.++...+....+.++
T Consensus       151 i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av  183 (428)
T PRK10157        151 IEAKTVILADGVNSILAEKLGMAKRVKPTDVAV  183 (428)
T ss_pred             EECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEE
Confidence            999999999999999999988764433444333

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.88  E-value=3.1e-20  Score=149.41  Aligned_cols=205  Identities=16%  Similarity=0.213  Sum_probs=122.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      +||+||||||+|+++|+.|+++|++|+|+||..... ..++..+.   .+.++++|+.+.+...  ......+... .+ 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p-~~-   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISP-SN-   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHHh--hhceeEEecC-Cc-
Confidence            589999999999999999999999999999976532 22344443   3567888887654432  2333333321 11 


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--CC-----C--cEEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--GD-----S--TIIK  154 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~-----g--~~~~  154 (232)
                       ....+...... ......++|..|.+.|.+.+.  |++++.++ +.++....+.+.. +.|+.  .+     |  .+++
T Consensus        73 -~~~~~~~~~~~-~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~i~  148 (398)
T TIGR02028        73 -IAVDIGRTLKE-HEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDP-YTLHYISSDSGGPSGTRCTLE  148 (398)
T ss_pred             -eEEEeccCCCC-CCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCce-EEEEEeeccccccCCCccEEE
Confidence             12222211110 111236899999999998764  78887774 7777542210232 44442  22     3  3799


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CCCcccee-EEEe----cCeEEEEEEcCCCeEEEEE
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HGLNQDIR-QFVG----VGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~p~~~~~~~~~~  225 (232)
                      |++||+|||.+|.+|+.++.+..  .....+...+..+.. ......+. .+++    ++.+.|++|.++. ....+
T Consensus       149 a~~VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~  222 (398)
T TIGR02028       149 VDAVIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGT  222 (398)
T ss_pred             eCEEEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEE
Confidence            99999999999999999986532  111222222222221 11222222 3333    3557999999854 44443

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.87  E-value=1.5e-20  Score=144.49  Aligned_cols=219  Identities=21%  Similarity=0.208  Sum_probs=160.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC--c-------CcceeeeecccHHHHHHHcCChHHHHh-h
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGL--R-------ATGAALTLSPNAWLALDALGVSHKLTS-V   69 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~--~-------~~~~~~~~~~~~~~~l~~~g~~~~~~~-~   69 (232)
                      .+|||+||||||+|+++|..|...    -.||.++|-...+  .       -..+-..+.+.+...++.+|.|+.+.. .
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R  114 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR  114 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence            369999999999999999999964    4699999988432  1       123455678889999999999998865 5


Q ss_pred             ccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhh-----hCCCCeEEeCceEEEEEec-----CCCC
Q 044609           70 YAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALAD-----ELPDDTIQFSSKIAAIDSQ-----TLNG  139 (232)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~i~~~~~v~~i~~~-----~~~g  139 (232)
                      ..+...+..++....  ..+.+.+.... ...++.+....+...|+.     ..+++++....++.++...     ++.+
T Consensus       115 ~~~~~~~~v~Ds~s~--a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~  191 (481)
T KOG3855|consen  115 YQKFSRMLVWDSCSA--ALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG  191 (481)
T ss_pred             cccccceeeecccch--hhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence            566666666654333  23333322220 233566777777777773     2237899999998888652     1114


Q ss_pred             CccEEEEeCCCcEEEccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCC-CCCCccceeEEEecCeEEEEEEcC
Q 044609          140 SSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPH-GHGLNQDIRQFVGVGFRAGFIPLN  217 (232)
Q Consensus       140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~  217 (232)
                      .. ..+.+.||..+.+|++|+|||.+|.+|+..+++.+.+ +.+++..++..+.+ ......+|+.|.+.|+ ++++|++
T Consensus       192 ~~-~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp-iAllpl~  269 (481)
T KOG3855|consen  192 MW-FHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP-IALLPLS  269 (481)
T ss_pred             ce-EEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc-eeecccc
Confidence            45 8888999999999999999999999999999987765 56778888777766 3334567899999998 8899999


Q ss_pred             CCeEEEEEEecC
Q 044609          218 DRDVYWFLNRYS  229 (232)
Q Consensus       218 ~~~~~~~~~~~~  229 (232)
                      ++-  -.++|+.
T Consensus       270 d~~--s~LvWSt  279 (481)
T KOG3855|consen  270 DTL--SSLVWST  279 (481)
T ss_pred             ccc--ccceeec
Confidence            975  3455544

>PLN02463 lycopene beta cyclase

Probab=99.85  E-value=2.4e-19  Score=145.16  Aligned_cols=196  Identities=17%  Similarity=0.221  Sum_probs=122.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+||+||||||+|+++|..|+++|++|+|+|+.+.... ......   ..+.++.+|+.+.+....   ....++.... 
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~w---~~~~v~~~~~-   99 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTTW---PGAVVYIDDG-   99 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhhC---CCcEEEEeCC-
Confidence            48999999999999999999999999999999754311 111111   235677888877664432   1222222111 


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                      ....      .   ......++|..|.+.|.+.+.  +++++ ..+|++++..+   .. +.|++.+|.+++||+||+||
T Consensus       100 ~~~~------~---~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~~-~~V~~~dG~~i~A~lVI~Ad  165 (447)
T PLN02463        100 KKKD------L---DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE---SK-SLVVCDDGVKIQASLVLDAT  165 (447)
T ss_pred             CCcc------c---cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECc
Confidence            1100      0   122346899999999988775  67775 56899998764   33 77888999899999999999


Q ss_pred             CCchhhhhhhcCCCCcccce-eEEEEeeecCCCCCCccceeEEE----------------ec--CeEEEEEEcCCCeEEE
Q 044609          163 GVHSMVAQWLGLSESINSGR-SSVRGLAVFPHGHGLNQDIRQFV----------------GV--GFRAGFIPLNDRDVYW  223 (232)
Q Consensus       163 G~~S~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~p~~~~~~~~  223 (232)
                      |.+|.+++.   ..+...+. .++........ .+++.+...++                ..  ..+++++|.++++++.
T Consensus       166 G~~s~l~~~---~~~~~~g~Q~a~Gi~~ev~~-~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v  241 (447)
T PLN02463        166 GFSRCLVQY---DKPFNPGYQVAYGILAEVDS-HPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL  241 (447)
T ss_pred             CCCcCccCC---CCCCCccceeeeeEEeecCC-CCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence            999976542   22333333 33332333222 12222211110                00  3478999999998654


Q ss_pred             EEE
Q 044609          224 FLN  226 (232)
Q Consensus       224 ~~~  226 (232)
                      -.+
T Consensus       242 EeT  244 (447)
T PLN02463        242 EET  244 (447)
T ss_pred             Eee
Confidence            443

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.85  E-value=1.7e-19  Score=146.76  Aligned_cols=216  Identities=21%  Similarity=0.188  Sum_probs=131.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHH--HHhhccCc-eeeEEEE
Q 044609            7 DVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK--LTSVYAPA-KRVFVTN   80 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~-~~~~~~~   80 (232)
                      ||+|||||++|.++|..|++.+   ++|+|||+...+. -+-|.+..|.....++.+|+.+.  +.+..... .++.+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999988   8999999887663 45678889999999999999877  44433332 2444433


Q ss_pred             cCC-CceeEEeccC-------------------------------------------CCC---CCCCceeeeehHHHHHH
Q 044609           81 LGT-GATQELSYAG-------------------------------------------KSG---RIGSGLRSVHRQSLLEA  113 (232)
Q Consensus        81 ~~~-~~~~~~~~~~-------------------------------------------~~~---~~~~~~~~~~~~~l~~~  113 (232)
                      +.. +.....+|..                                           ...   ......+.++|..|.+.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence            221 1112222210                                           000   00234678999999999


Q ss_pred             HhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhh-hcCCCCccc----ceeEEE
Q 044609          114 LADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLSESINS----GRSSVR  186 (232)
Q Consensus       114 l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~-~~~~~~~~~----~~~~~~  186 (232)
                      |.+.+.  |++++.+ +|+++..+++ |.. ..|.+.+|++++||++|+|+|..|.+.+. ++.+.....    ...++.
T Consensus       160 L~~~A~~~Gv~~~~g-~V~~v~~~~~-g~i-~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~  236 (454)
T PF04820_consen  160 LRRHAEERGVEVIEG-TVVDVELDED-GRI-TAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVA  236 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TT-SEE-EEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEE
T ss_pred             HHHHHhcCCCEEEeC-EEEEEEEcCC-CCE-EEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEE
Confidence            998874  8999887 5888877653 454 78899999999999999999999987655 433322221    122333


Q ss_pred             EeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecC
Q 044609          187 GLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS  229 (232)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  229 (232)
                      .......  +..+.......+..++|.+|++++... .++++.
T Consensus       237 ~~~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~  276 (454)
T PF04820_consen  237 VQVPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSS  276 (454)
T ss_dssp             EEEE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEET
T ss_pred             EecCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEecc
Confidence            2222222  223333344455667999999998766 555543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02697 lycopene epsilon cyclase

Probab=99.84  E-value=1.2e-18  Score=143.34  Aligned_cols=196  Identities=17%  Similarity=0.190  Sum_probs=123.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+||+||||||+|+++|..|++.|++|++||+......   ...+|.   ..++.+++.+.+...   +.....+.. .+
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~-~~  177 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEHV---WRDTIVYLD-DD  177 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHhh---cCCcEEEec-CC
Confidence            48999999999999999999999999999998643321   123332   456777776554432   222222221 11


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                      .....         ......++|..|.+.|.+.+.  ++++ .+++|+++..++  +.. ..+.+.+|.++.|++||+||
T Consensus       178 ~~~~~---------~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~-~vv~~~dG~~i~A~lVI~Ad  244 (529)
T PLN02697        178 KPIMI---------GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGL-RLVACEDGRVIPCRLATVAS  244 (529)
T ss_pred             ceeec---------cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcE-EEEEEcCCcEEECCEEEECC
Confidence            11111         111236899999999998765  6776 678999998764  232 33456788889999999999


Q ss_pred             CCchhhhhhhcCC--CCcccceeEEEEeeecCCCCCCccceeEEEe---------------cCeEEEEEEcCCCeEEEEE
Q 044609          163 GVHSMVAQWLGLS--ESINSGRSSVRGLAVFPHGHGLNQDIRQFVG---------------VGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       163 G~~S~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~  225 (232)
                      |.+|.  +.++.+  .+....+.++...+.... .+++++...+++               ...++|++|.+++++++--
T Consensus       245 G~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~-~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~  321 (529)
T PLN02697        245 GAASG--RLLQYEVGGPRVCVQTAYGVEVEVEN-NPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEE  321 (529)
T ss_pred             CcChh--hhhccccCCCCcccEEEEEEEEEecC-CCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEE
Confidence            99993  333322  222334555444444332 123333233322               2357899999999877744


Q ss_pred             E
Q 044609          226 N  226 (232)
Q Consensus       226 ~  226 (232)
                      +
T Consensus       322 T  322 (529)
T PLN02697        322 T  322 (529)
T ss_pred             e
Confidence            3

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.82  E-value=1e-17  Score=133.82  Aligned_cols=190  Identities=17%  Similarity=0.189  Sum_probs=118.6

Q ss_pred             cEEEECCCHHHHHHHHHH--HhCCCcEEEEecCCCCc-CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            7 DVVIIGAGIAGLATAVAL--RRLGIKALVLEKSDGLR-ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L--~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ||+||||||||+++|..|  ++.|.+|+|||+.+... ...+....+......      .+.+.  ...+..+.+.....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v--~~~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLV--SHRWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHH--heecCceEEEeCCC
Confidence            899999999999999999  77899999999987651 111222222221111      11111  12223344433222


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                      . ....         ......+++..|.+.|.+.+. +..++.+.+|++++..+   .. +.|.+.+|.+++|++||+|+
T Consensus        73 ~-~~~~---------~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~---~~-~~v~~~~g~~i~a~~VvDa~  138 (374)
T PF05834_consen   73 S-RILI---------DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETG---DG-VLVVLADGRTIRARVVVDAR  138 (374)
T ss_pred             c-eEEc---------ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecC---ce-EEEEECCCCEEEeeEEEECC
Confidence            1 1111         122447999999999999886 56788899999998874   34 77889999999999999999


Q ss_pred             CCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCcc---ceeEEE-----ecCeEEEEEEcCCCeEEEEEEe
Q 044609          163 GVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQ---DIRQFV-----GVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       163 G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      |..+..        ....+...+.|+ +....+ .+++   .++-|.     ....+++++|+++++..+-.++
T Consensus       139 g~~~~~--------~~~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~  203 (374)
T PF05834_consen  139 GPSSPK--------ARPLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETS  203 (374)
T ss_pred             Cccccc--------ccccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEE
Confidence            976641        111122223343 333332 2233   233222     2246788999999997765543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.80  E-value=2.5e-17  Score=132.71  Aligned_cols=143  Identities=22%  Similarity=0.323  Sum_probs=93.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      ||+||||||+|+++|+.|++.|++|+|||+.+.... .....++..   .++++++.+.+..   .+........... .
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~-~   72 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG-NHTYGVWDD---DLSDLGLADCVEH---VWPDVYEYRFPKQ-P   72 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC-CccccccHh---hhhhhchhhHHhh---cCCCceEEecCCc-c
Confidence            899999999999999999999999999999875422 222333332   2334443222211   1111111111110 0


Q ss_pred             eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                      ...         ......+++..|.+.|.+.+.  +++++ ..+|.++..++  +.. +.|.+.+|.+++|++||+|+|.
T Consensus        73 ~~~---------~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~-~~v~~~~g~~~~a~~VI~A~G~  139 (388)
T TIGR01790        73 RKL---------GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VAL-STVYCAGGQRIQARLVIDARGF  139 (388)
T ss_pred             hhc---------CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--Cce-eEEEeCCCCEEEeCEEEECCCC
Confidence            000         222346899999999988765  56665 56888887663  244 7788888888999999999999


Q ss_pred             chhhhh
Q 044609          165 HSMVAQ  170 (232)
Q Consensus       165 ~S~~r~  170 (232)
                      +|.+++
T Consensus       140 ~s~~~~  145 (388)
T TIGR01790       140 GPLVQY  145 (388)
T ss_pred             chhccc
Confidence            996654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.78  E-value=6.7e-18  Score=127.57  Aligned_cols=137  Identities=24%  Similarity=0.307  Sum_probs=92.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--ceee-----eecccHHHHHHHcCChHHHHhhccCceee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--GAAL-----TLSPNAWLALDALGVSHKLTSVYAPAKRV   76 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--~~~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~   76 (232)
                      .++||+||||||+|+++|+.|++.|++|+|+||...++..  +.+.     .+.....++++++|+..            
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~------------   91 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRY------------   91 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCc------------
Confidence            4589999999999999999999999999999998876431  1111     11122233334333210            


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC------
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG------  148 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~------  148 (232)
                        ...                 ....+.+++..+.+.|.+.+.  +++++++++|.++..+++ +.. ..+...      
T Consensus        92 --~~~-----------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V-~Gvv~~~~~v~~  150 (257)
T PRK04176         92 --KEV-----------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRV-AGVVINWTPVEM  150 (257)
T ss_pred             --eee-----------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcE-EEEEEccccccc
Confidence              000                 011235678888888887664  899999999999987542 232 333321      


Q ss_pred             -----CCcEEEccEEEecCCCchhhhhhhc
Q 044609          149 -----DSTIIKAKVLIGCDGVHSMVAQWLG  173 (232)
Q Consensus       149 -----~g~~~~a~~vV~A~G~~S~~r~~~~  173 (232)
                           +..+++|++||+|+|++|.+.+.+.
T Consensus       151 ~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~  180 (257)
T PRK04176        151 AGLHVDPLTIEAKAVVDATGHDAEVVSVLA  180 (257)
T ss_pred             cCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence                 2247999999999999998877663

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=128.57  Aligned_cols=147  Identities=26%  Similarity=0.335  Sum_probs=95.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----ccee---eeecccHHHHHHHcCCh-HHHHh---hcc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TGAA---LTLSPNAWLALDALGVS-HKLTS---VYA   71 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~~~---~~~~~~~~~~l~~~g~~-~~~~~---~~~   71 (232)
                      |+.+||+||||||||++||..++++|.+|+|||+.+.++.    +|.|   +......-+.+.+.+-- ..+..   ...
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence            3568999999999999999999999999999999988742    2222   22111222333333211 11111   111


Q ss_pred             Cce--------eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc
Q 044609           72 PAK--------RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS  141 (232)
Q Consensus        72 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~  141 (232)
                      +.+        ++.+.....++.            .+  -...-..++++|...++  +++++.+++|.+++.++   ..
T Consensus        81 ~~d~i~~~e~~Gi~~~e~~~Gr~------------Fp--~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~  143 (408)
T COG2081          81 PEDFIDWVEGLGIALKEEDLGRM------------FP--DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SG  143 (408)
T ss_pred             HHHHHHHHHhcCCeeEEccCcee------------cC--CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ce
Confidence            111        111111111110            00  01345678888888775  89999999999999874   44


Q ss_pred             cEEEEeCCCcEEEccEEEecCCCchh
Q 044609          142 AAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       142 ~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                       ..+.+++|++++||.+|+|+|..|.
T Consensus       144 -f~l~t~~g~~i~~d~lilAtGG~S~  168 (408)
T COG2081         144 -FRLDTSSGETVKCDSLILATGGKSW  168 (408)
T ss_pred             -EEEEcCCCCEEEccEEEEecCCcCC
Confidence             8899999989999999999998773

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.77  E-value=2.2e-17  Score=142.46  Aligned_cols=141  Identities=21%  Similarity=0.307  Sum_probs=103.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcC--ChHHHHhhccCceeeEEEEcC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALG--VSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      +|+||||||+|+++|+.|+++  |++|+|+||.+.....|.++.+++++++.|+.++  +...+...........+..  
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF--   79 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence            699999999999999999998  8999999999887777889999999999988776  2233333333333333322  


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      .+.... .    .   ......++|..|.+.|.+.+.  +++++++++|+++..        .        ...||+||+
T Consensus        80 ~g~~~~-~----~---g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------~--------~~~~D~VVg  135 (765)
T PRK08255         80 KGRRIR-S----G---GHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA--------L--------AADADLVIA  135 (765)
T ss_pred             CCEEEE-E----C---CeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------h--------hcCCCEEEE
Confidence            121110 0    1   122335889999999998875  789999988765421        1        147899999


Q ss_pred             cCCCchhhhhhhc
Q 044609          161 CDGVHSMVAQWLG  173 (232)
Q Consensus       161 A~G~~S~~r~~~~  173 (232)
                      |||.+|.+|+.+.
T Consensus       136 ADG~~S~vR~~~~  148 (765)
T PRK08255        136 SDGLNSRIRTRYA  148 (765)
T ss_pred             cCCCCHHHHHHHH
Confidence            9999999999764

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.74  E-value=8.6e-17  Score=121.17  Aligned_cols=137  Identities=22%  Similarity=0.327  Sum_probs=89.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce--ee-----eecccHHHHHHHcCChHHHHhhccCceee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--AL-----TLSPNAWLALDALGVSHKLTSVYAPAKRV   76 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~--~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~   76 (232)
                      .++||+||||||+|+++|+.|+++|++|+|+||...++....  +.     .+.....+.++++|+.             
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------   86 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR-------------   86 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC-------------
Confidence            458999999999999999999999999999999987642211  10     0111122222222211             


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC------
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG------  148 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~------  148 (232)
                       +             ...    ....+..++..+.+.|.+.+.  +++++++++|.++..+++.... ..|.+.      
T Consensus        87 -~-------------~~~----~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V-~GVv~~~~~v~~  147 (254)
T TIGR00292        87 -Y-------------EDE----GDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGV-AGVVINWSAIEL  147 (254)
T ss_pred             -e-------------eec----cCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCce-EEEEeCCccccc
Confidence             0             000    111234577888888887663  7899999999999876520022 344332      


Q ss_pred             -----CCcEEEccEEEecCCCchhhhhhh
Q 044609          149 -----DSTIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       149 -----~g~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                           +..++.|++||.|||+.|.+.+.+
T Consensus       148 ~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       148 AGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             cCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence                 123799999999999998765544

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.72  E-value=6.9e-16  Score=122.94  Aligned_cols=185  Identities=19%  Similarity=0.255  Sum_probs=110.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHh-----hccCceeeEEE
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTS-----VYAPAKRVFVT   79 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~~~   79 (232)
                      ||+|||||++|+++|..|++.  |++|+++|+.+.... .+...++..        ++.+....     ....+..+.++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~-~~tw~~~~~--------~~~~~~~~~~~~~v~~~W~~~~v~   71 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG-NHTWSFFDS--------DLSDAQHAWLADLVQTDWPGYEVR   71 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC-cccceeccc--------ccchhhhhhhhhhheEeCCCCEEE
Confidence            899999999999999999987  999999999864432 112222221        11111100     11122222222


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                      ..  +      .....   ......+++..|.+.+.+.+.. .++.+++|+++.  +   +. +.+  .+|.+++|++||
T Consensus        72 ~~--~------~~~~l---~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~--~---~~-v~l--~dg~~~~A~~VI  131 (370)
T TIGR01789        72 FP--K------YRRKL---KTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLD--A---DG-VDL--APGTRINARSVI  131 (370)
T ss_pred             Cc--c------hhhhc---CCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEe--C---CE-EEE--CCCCEEEeeEEE
Confidence            10  0      11111   2234589999999999887753 377789999883  2   22 444  788899999999


Q ss_pred             ecCCCchhhhhhhcCCCCcccceeEEEEe-eecCCCCCCccc---eeEEE---ec-CeEEEEEEcCCCeEEEEEEecCC
Q 044609          160 GCDGVHSMVAQWLGLSESINSGRSSVRGL-AVFPHGHGLNQD---IRQFV---GV-GFRAGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~---~~-~~~~~~~p~~~~~~~~~~~~~~~  230 (232)
                      +|+|.+|.-        ....++..+.|+ .....+  +++.   ++-|.   .+ ..+++++|+++++.++-.++..+
T Consensus       132 ~A~G~~s~~--------~~~~~~Q~f~G~~~r~~~p--~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~  200 (370)
T TIGR01789       132 DCRGFKPSA--------HLKGGFQVFLGREMRLQEP--HGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD  200 (370)
T ss_pred             ECCCCCCCc--------cccceeeEEEEEEEEEcCC--CCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC
Confidence            999998741        111344444443 223322  3333   22222   23 34566699999998887766554

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.71  E-value=7.1e-16  Score=123.80  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ...++...+...+.+.+.  +++++++++|+++..++   .. +.|.+++| ++.||.||+|+|.++.
T Consensus       143 ~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        143 GGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADG---DG-VTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             CCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC---Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence            346777888887766553  78999999999998764   34 77887777 6999999999999974

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.70  E-value=2.9e-15  Score=124.20  Aligned_cols=167  Identities=18%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCCh---------HHHHhhccC-
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVS---------HKLTSVYAP-   72 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~---------~~~~~~~~~-   72 (232)
                      .++||+|||||++|+++|+.|+++|++|+||||++.. +.++++..+-..+.+.++...+.         ..+...... 
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~l   84 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI   84 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCcc
Confidence            4599999999999999999999999999999999654 23333333333333333221110         000010000 


Q ss_pred             ce--eeEEEEcCCCc-----------------------eeEEecc----------CCCCCCCCceeeeehHHHHHHHhhh
Q 044609           73 AK--RVFVTNLGTGA-----------------------TQELSYA----------GKSGRIGSGLRSVHRQSLLEALADE  117 (232)
Q Consensus        73 ~~--~~~~~~~~~~~-----------------------~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~l~~~  117 (232)
                      ..  .+.+.......                       ...++..          ...+.+.+....++...+...+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~  164 (502)
T PRK13369         85 IWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALD  164 (502)
T ss_pred             ccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHH
Confidence            00  00000000000                       0001100          0000011122346778888777765


Q ss_pred             CC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC----cEEEccEEEecCCCchh-hhh-hhcC
Q 044609          118 LP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS----TIIKAKVLIGCDGVHSM-VAQ-WLGL  174 (232)
Q Consensus       118 ~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g----~~~~a~~vV~A~G~~S~-~r~-~~~~  174 (232)
                      +.  |++++.+++|+++..++   .. +.|.+.++    .++.|+.||+|+|.||. +.+ .++.
T Consensus       165 a~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~  225 (502)
T PRK13369        165 AAERGATILTRTRCVSARREG---GL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGS  225 (502)
T ss_pred             HHHCCCEEecCcEEEEEEEcC---CE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCC
Confidence            53  88999999999998763   33 55665554    26899999999999984 544 3354

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.70  E-value=1.3e-15  Score=126.21  Aligned_cols=170  Identities=18%  Similarity=0.209  Sum_probs=94.1

Q ss_pred             CCcc-cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCC-------hH--HHHhh
Q 044609            1 MEMV-EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGV-------SH--KLTSV   69 (232)
Q Consensus         1 m~~~-~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~-------~~--~~~~~   69 (232)
                      |+|+ .+||+|||||++|+++|+.|+++|++|+||||++.. +.++++..+...+.+.+....+       .+  .+...
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~   80 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRM   80 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHh
Confidence            5554 499999999999999999999999999999998653 3334444444444333322110       00  00010


Q ss_pred             ccCc-eeeEE--EE------------------c-C-CCce---eEEec------c----CCCCCCCCceeeeehHHHHHH
Q 044609           70 YAPA-KRVFV--TN------------------L-G-TGAT---QELSY------A----GKSGRIGSGLRSVHRQSLLEA  113 (232)
Q Consensus        70 ~~~~-~~~~~--~~------------------~-~-~~~~---~~~~~------~----~~~~~~~~~~~~~~~~~l~~~  113 (232)
                      ...+ ....+  ..                  . . ....   ..+.+      +    ...+.+.+....++...+...
T Consensus        81 ~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~  160 (508)
T PRK12266         81 APHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVL  160 (508)
T ss_pred             CCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHH
Confidence            0000 00000  00                  0 0 0000   00000      0    000000111124566777777


Q ss_pred             HhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC---Cc--EEEccEEEecCCCchh-hhhh-hcC
Q 044609          114 LADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---ST--IIKAKVLIGCDGVHSM-VAQW-LGL  174 (232)
Q Consensus       114 l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g~--~~~a~~vV~A~G~~S~-~r~~-~~~  174 (232)
                      +.+.+.  |++++.+++|+++..++   .. +.|.+.+   |+  ++.|+.||+|+|.|+. +.+. ++.
T Consensus       161 l~~~A~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~  226 (508)
T PRK12266        161 NARDAAERGAEILTRTRVVSARREN---GL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGL  226 (508)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCC
Confidence            665543  88999999999998753   33 5555543   43  7899999999999984 4443 354

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.70  E-value=3.9e-15  Score=120.11  Aligned_cols=166  Identities=24%  Similarity=0.368  Sum_probs=97.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCc--Ccce--ee-----eecccH-HHHHHH--cCChHHHHhh-
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLR--ATGA--AL-----TLSPNA-WLALDA--LGVSHKLTSV-   69 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~--~~~~--~~-----~~~~~~-~~~l~~--~g~~~~~~~~-   69 (232)
                      .+||+|||||++|+++|+.|+++  |.+|+|+||...+.  .+++  +.     ...+.. ...|..  ..++.++.+. 
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   81 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence            38999999999999999999998  99999999986442  1221  11     111111 111111  1111111111 


Q ss_pred             ccCce--eeEEEE-------------------------cCCCce-eEEecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609           70 YAPAK--RVFVTN-------------------------LGTGAT-QELSYA-GKSGRIGSGLRSVHRQSLLEALADELP-  119 (232)
Q Consensus        70 ~~~~~--~~~~~~-------------------------~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~-  119 (232)
                      ..++.  +..+..                         ...... ...+.. ...+.+.+....++...+.+.|.+.+. 
T Consensus        82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~  161 (393)
T PRK11728         82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA  161 (393)
T ss_pred             CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence            11110  111111                         000000 000000 011112344467888999999987764 


Q ss_pred             -CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCC
Q 044609          120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS  175 (232)
Q Consensus       120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~  175 (232)
                       |++++++++|.++..++   .. +.|.+.++ ++.||.||+|+|.+| .+.+.++.+
T Consensus       162 ~Gv~i~~~~~V~~i~~~~---~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        162 RGGEIRLGAEVTALDEHA---NG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             CCCEEEcCCEEEEEEecC---Ce-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence             78999999999998753   33 66777776 699999999999998 466777754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.70  E-value=2.2e-15  Score=119.96  Aligned_cols=74  Identities=22%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEE-EEeCCCcEEEccEEEecCCCchhh-hhhhcCC
Q 044609          100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAI-INLGDSTIIKAKVLIGCDGVHSMV-AQWLGLS  175 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~-v~~~~g~~~~a~~vV~A~G~~S~~-r~~~~~~  175 (232)
                      +....++...+.+.|.+.+.  |++++.+++|+++..++   .. +. |.+.+|+ +.||.||+|+|.+|.. .+.++.+
T Consensus       139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~-v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~  213 (358)
T PF01266_consen  139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG---GR-VTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLD  213 (358)
T ss_dssp             TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET---TE-EEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTS
T ss_pred             cccccccccchhhhhHHHHHHhhhhccccccccchhhcc---cc-cccccccccc-cccceeEecccccceeeeeccccc
Confidence            45667899999999998764  89999999999999874   33 55 9999998 9999999999999853 5555554


Q ss_pred             CCc
Q 044609          176 ESI  178 (232)
Q Consensus       176 ~~~  178 (232)
                      .+.
T Consensus       214 ~~~  216 (358)
T PF01266_consen  214 LPL  216 (358)
T ss_dssp             STE
T ss_pred             ccc
Confidence            433

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.69  E-value=1e-15  Score=121.64  Aligned_cols=171  Identities=29%  Similarity=0.441  Sum_probs=106.1

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCc---------ceeeeecccHHH-------------HHH
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT---------GAALTLSPNAWL-------------ALD   58 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~---------~~~~~~~~~~~~-------------~l~   58 (232)
                      |+.+||+|||||+.|+++|+.|++..  ++|+|+||...+...         ..++.+.+.+..             +-+
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            35689999999999999999999998  999999999876321         123333333111             112


Q ss_pred             HcCCh----------------HHHHhhccC--ceeeE-EEEcCCCceeEE-ecc---CCCCCCCCceeeeehHHHHHHHh
Q 044609           59 ALGVS----------------HKLTSVYAP--AKRVF-VTNLGTGATQEL-SYA---GKSGRIGSGLRSVHRQSLLEALA  115 (232)
Q Consensus        59 ~~g~~----------------~~~~~~~~~--~~~~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~l~  115 (232)
                      ++++.                +.++.....  ..+.. ....+..+...+ +..   ...+.+-+....++...+...|.
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            22210                001100000  00111 111111111111 111   11111244556788888888888


Q ss_pred             hhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE-EEccEEEecCCCch-hhhhhhcCCC
Q 044609          116 DELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI-IKAKVLIGCDGVHS-MVAQWLGLSE  176 (232)
Q Consensus       116 ~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~-~~a~~vV~A~G~~S-~~r~~~~~~~  176 (232)
                      +.+.  |++++++++|++++..++ | . ..+.+.+|++ ++|++||.|.|.+| .+.+..+.+.
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~d-g-~-~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSD-G-V-FVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeCC-c-e-EEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            8764  899999999999999863 2 4 7788888876 99999999999998 5777777654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.69  E-value=4.9e-15  Score=119.13  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc-hhhhhhhcCCC
Q 044609          100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH-SMVAQWLGLSE  176 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~-S~~r~~~~~~~  176 (232)
                      +....++...+.+.|.+.+.  +++++.+++|+++..++   .. +.|.+.++ ++.||.||+|+|.+ +.+++.++...
T Consensus       137 ~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~  211 (380)
T TIGR01377       137 PNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE---LL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI  211 (380)
T ss_pred             CCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence            34457788888888877654  78999999999998763   33 66777666 69999999999987 56777777665


Q ss_pred             Cccc
Q 044609          177 SINS  180 (232)
Q Consensus       177 ~~~~  180 (232)
                      +..+
T Consensus       212 ~~~~  215 (380)
T TIGR01377       212 PLQP  215 (380)
T ss_pred             CceE
Confidence            5443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.67  E-value=8.6e-16  Score=122.94  Aligned_cols=142  Identities=25%  Similarity=0.315  Sum_probs=75.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----cc---eeeee---------------cccHHHHHHHcCCh
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TG---AALTL---------------SPNAWLALDALGVS   63 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~---~~~~~---------------~~~~~~~l~~~g~~   63 (232)
                      |||+|||||+||++||+.|++.|.+|+|+||++.++.    +|   +.+..               .......+++++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            7999999999999999999999999999999987632    11   11111               00122334444322


Q ss_pred             HHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc
Q 044609           64 HKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS  141 (232)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~  141 (232)
                      +- ..-... .++......+++  .++.            .-....+++.|.+.+.  +++++++++|.+++.++  +..
T Consensus        81 d~-~~ff~~-~Gv~~~~~~~gr--~fP~------------s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~  142 (409)
T PF03486_consen   81 DL-IAFFEE-LGVPTKIEEDGR--VFPK------------SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGV  142 (409)
T ss_dssp             HH-HHHHHH-TT--EEE-STTE--EEET------------T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEE
T ss_pred             HH-HHHHHh-cCCeEEEcCCCE--ECCC------------CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--Cce
Confidence            21 111100 011111111111  1111            1235677777777665  89999999999998865  344


Q ss_pred             cEEEEeCCCcEEEccEEEecCCCch
Q 044609          142 AAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       142 ~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                       +.|.++++.++.||.||+|+|..|
T Consensus       143 -f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  143 -FGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             -EEEEETTTEEEEESEEEE----SS
T ss_pred             -eEeeccCcccccCCEEEEecCCCC
Confidence             778887778899999999999876

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.66  E-value=6e-15  Score=104.95  Aligned_cols=136  Identities=22%  Similarity=0.324  Sum_probs=92.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce--e-----eeecccHHHHHHHcCChHHHHhhccCceeeE
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--A-----LTLSPNAWLALDALGVSHKLTSVYAPAKRVF   77 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~--~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~   77 (232)
                      +.||+||||||+||++|+.|+++|+||+|+||+-.++...+  |     +.+...+.++|+++|+...            
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye------------   97 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE------------   97 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce------------
Confidence            36999999999999999999999999999999988854322  1     2234456667777654221            


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-C-CCeEEeCceEEEEEecCCCCCc-cEEEEeC------
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-P-DDTIQFSSKIAAIDSQTLNGSS-AAIINLG------  148 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~------  148 (232)
                        .             .    ....+..+...+...|...+ + +.+++.+..|+++...++ ... .+.+.+.      
T Consensus        98 --~-------------~----e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~  157 (262)
T COG1635          98 --E-------------E----EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAG  157 (262)
T ss_pred             --e-------------c----CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcc
Confidence              0             0    12234556667777666543 3 789999999999988762 122 1222221      


Q ss_pred             ---CCcEEEccEEEecCCCchhhhhhh
Q 044609          149 ---DSTIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       149 ---~g~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                         |--+++|++||.|||+-..+-+.+
T Consensus       158 lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         158 LHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             cccCcceeeEEEEEeCCCCchHHHHHH
Confidence               123799999999999987654433

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.66  E-value=2.1e-15  Score=107.76  Aligned_cols=133  Identities=27%  Similarity=0.360  Sum_probs=84.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc--e-----eeeecccHHHHHHHcCChHHHHhhccCceee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG--A-----ALTLSPNAWLALDALGVSHKLTSVYAPAKRV   76 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~--~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~   76 (232)
                      .++||+||||||+|+++|+.|++.|+||++|||+..++..-  .     .+.+...+..+|+++|+.-.           
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~-----------   84 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE-----------   84 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence            35899999999999999999999999999999998875421  1     23455567777777764211           


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC--CCCeEEeCceEEEEEecCCCCCc-cEEEEeC----C
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL--PDDTIQFSSKIAAIDSQTLNGSS-AAIINLG----D  149 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~----~  149 (232)
                         .          +       ....+..+...+...|...+  +|++++..+.|+++...++ +.. .+.+.+.    .
T Consensus        85 ---~----------~-------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~  143 (230)
T PF01946_consen   85 ---E----------Y-------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMA  143 (230)
T ss_dssp             ---E------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT
T ss_pred             ---E----------e-------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHh
Confidence               0          0       12244567777777766543  3899999999999987752 232 1222221    2


Q ss_pred             C-----cEEEccEEEecCCCchhh
Q 044609          150 S-----TIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       150 g-----~~~~a~~vV~A~G~~S~~  168 (232)
                      |     -+++|++||.|||+-+.+
T Consensus       144 glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen  144 GLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             --T-B-EEEEESEEEE---SSSSS
T ss_pred             hcCCCcceEEEeEEEeCCCCchHH
Confidence            2     289999999999998754

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.66  E-value=5.5e-15  Score=119.86  Aligned_cols=114  Identities=12%  Similarity=-0.004  Sum_probs=68.0

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCCCCcc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLSESIN  179 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~~~~~  179 (232)
                      ..++...+...|.+.+.  |++++.+++|++++..++ +.. +.|.+.+| ++.|+.||+|+|.++ .+++.++...+..
T Consensus       178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~  254 (407)
T TIGR01373       178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRV-IGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIE  254 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcC
Confidence            45666777777766653  899999999999976432 333 56777777 589998877766665 6777777665543


Q ss_pred             cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609          180 SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF  224 (232)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  224 (232)
                      .....+..+  .+.. +..+.  .+...+..+++.|.+++++.+.
T Consensus       255 ~~~~~~~~~--~~~~-~~~~~--~~~~~~~~~y~~p~~~g~~~ig  294 (407)
T TIGR01373       255 SHPLQALVS--EPLK-PIIDT--VVMSNAVHFYVSQSDKGELVIG  294 (407)
T ss_pred             cccceEEEe--cCCC-CCcCC--eEEeCCCceEEEEcCCceEEEe
Confidence            332222111  1111 11111  1223333467788887765443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.64  E-value=1.7e-14  Score=116.99  Aligned_cols=216  Identities=21%  Similarity=0.244  Sum_probs=123.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCCh---HHHHh-----hcc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVS---HKLTS-----VYA   71 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~---~~~~~-----~~~   71 (232)
                      |.++++||+|||||+.|+-+|..++.+|++|+|+|+++.. +.++++..+-+.+.+.+++..+.   +.+.+     ...
T Consensus         8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A   87 (532)
T COG0578           8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA   87 (532)
T ss_pred             ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence            3446799999999999999999999999999999999876 56777778888888877765432   11111     111


Q ss_pred             Cc-----eeeEEEEc-----------------CCCc------eeEEecc------------CCCCCCCCceeeeehHHHH
Q 044609           72 PA-----KRVFVTNL-----------------GTGA------TQELSYA------------GKSGRIGSGLRSVHRQSLL  111 (232)
Q Consensus        72 ~~-----~~~~~~~~-----------------~~~~------~~~~~~~------------~~~~~~~~~~~~~~~~~l~  111 (232)
                      |.     ....-...                 ..+.      ...++..            ...+-+.+.-.+++..+|.
T Consensus        88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv  167 (532)
T COG0578          88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV  167 (532)
T ss_pred             ccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence            11     00000000                 0000      0000000            0000011222355555555


Q ss_pred             HHHhhhC--CCCeEEeCceEEEEEecCCCCCccEEEEeCCC---c--EEEccEEEecCCCch-hhhhhhcCCCCccccee
Q 044609          112 EALADEL--PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---T--IIKAKVLIGCDGVHS-MVAQWLGLSESINSGRS  183 (232)
Q Consensus       112 ~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~--~~~a~~vV~A~G~~S-~~r~~~~~~~~~~~~~~  183 (232)
                      -.....+  .|.+++..++|+++..++  + . +.|+..|.   +  .++|+.||+|+|.|+ .+++..+...+......
T Consensus       168 ~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v-~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr  243 (532)
T COG0578         168 AANARDAAEHGAEILTYTRVESLRREG--G-V-WGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVR  243 (532)
T ss_pred             HHHHHHHHhcccchhhcceeeeeeecC--C-E-EEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccce
Confidence            5444333  378999999999999875  4 4 77776653   2  689999999999998 46777754422110110


Q ss_pred             EEEEe-eecCCCCCCccceeEEEe-cCeEEEEEEcCCCe
Q 044609          184 SVRGL-AVFPHGHGLNQDIRQFVG-VGFRAGFIPLNDRD  220 (232)
Q Consensus       184 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~  220 (232)
                      ...|. +.++...+.+..+...+. ++....++|-.+..
T Consensus       244 ~skGsHlVv~~~~~~~~a~~~~~~~d~r~~f~iP~~~~~  282 (532)
T COG0578         244 PSKGSHLVVDKKFPINQAVINRCRKDGRIVFAIPYEGKT  282 (532)
T ss_pred             eccceEEEecccCCCCceEEeecCCCCceEEEecCCCCE
Confidence            11111 222222222344444444 55556667777654

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.64  E-value=5.3e-15  Score=111.48  Aligned_cols=175  Identities=22%  Similarity=0.246  Sum_probs=106.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeec----c---------cHHHHHHHcCChHHHHhhc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS----P---------NAWLALDALGVSHKLTSVY   70 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~----~---------~~~~~l~~~g~~~~~~~~~   70 (232)
                      +..||+|||||+-|+++|+.|+++|.+++++|+.+.+...|.+...+    +         -..+.++++--.+.+....
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~   85 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK   85 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence            34899999999999999999999999999999998885544332211    0         0112222221001000000


Q ss_pred             cCceeeEEE------------------------EcCCCce-eE----Eecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609           71 APAKRVFVT------------------------NLGTGAT-QE----LSYA-GKSGRIGSGLRSVHRQSLLEALADELP-  119 (232)
Q Consensus        71 ~~~~~~~~~------------------------~~~~~~~-~~----~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~-  119 (232)
                      .......++                        ...+.++ ..    ++++ ...+.....+.++...+-++++...+. 
T Consensus        86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~  165 (399)
T KOG2820|consen   86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE  165 (399)
T ss_pred             ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence            000000000                        0001111 11    1111 112222445668888888888887775 


Q ss_pred             -CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch--hhhhhhcCCCCcc
Q 044609          120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS--MVAQWLGLSESIN  179 (232)
Q Consensus       120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S--~~r~~~~~~~~~~  179 (232)
                       |+.++.+.+|+.++..++++.. +.|.+.+|..+.|+-+|.|.|+|-  .++..++...|..
T Consensus       166 ~G~i~~dg~~v~~~~~~~e~~~~-v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~  227 (399)
T KOG2820|consen  166 LGVIFRDGEKVKFIKFVDEEGNH-VSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVA  227 (399)
T ss_pred             cCeEEecCcceeeEeeccCCCce-eEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccc
Confidence             8899999999998865443566 889999999999999999999994  3444455555543

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.62  E-value=5.9e-14  Score=113.97  Aligned_cols=70  Identities=16%  Similarity=0.281  Sum_probs=49.7

Q ss_pred             eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC-----cEEEccEEEecCCCchh-hhhhhcCC
Q 044609          104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-----TIIKAKVLIGCDGVHSM-VAQWLGLS  175 (232)
Q Consensus       104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-----~~~~a~~vV~A~G~~S~-~r~~~~~~  175 (232)
                      .++...+.+.|.+.+.  |++++.+++|++++.++   .. +.+.+.++     .+++||.||+|+|.+|. +.+.++..
T Consensus       193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~  268 (410)
T PRK12409        193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG---GG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR  268 (410)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence            4566677777777664  89999999999998753   33 44443332     37899999999999974 55555554


Q ss_pred             CC
Q 044609          176 ES  177 (232)
Q Consensus       176 ~~  177 (232)
                      .+
T Consensus       269 ~~  270 (410)
T PRK12409        269 VN  270 (410)
T ss_pred             Cc
Confidence            44

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.62  E-value=7.4e-15  Score=121.42  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCcCcceeeeec----ccHHHHHHHcCC-hHHHHhhccCceee
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAALTLS----PNAWLALDALGV-SHKLTSVYAPAKRV   76 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~-~~~~~~~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~   76 (232)
                      +.+|||+|||||+||+.+|+.++|.|.+|+++|+.. .++.-++.-.+.    ....+.++.+|- .......    ...
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~----~gi   77 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDK----TGI   77 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhh----ccC
Confidence            456999999999999999999999999999999874 222111110010    011222233331 1111110    011


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTII  153 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~  153 (232)
                      .+.......-     +..    ......+++..+.+.|.+.+.   +++++ ...|.++..++  +.. ..|.+.+|..+
T Consensus        78 q~r~ln~skG-----pAV----~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~--grV-~GV~t~dG~~I  144 (618)
T PRK05192         78 QFRMLNTSKG-----PAV----RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN--GRV-VGVVTQDGLEF  144 (618)
T ss_pred             ceeecccCCC-----Cce----eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC--CEE-EEEEECCCCEE
Confidence            1111110000     000    111125677777787766553   67764 56788887664  444 66888899999


Q ss_pred             EccEEEecCCCchh
Q 044609          154 KAKVLIGCDGVHSM  167 (232)
Q Consensus       154 ~a~~vV~A~G~~S~  167 (232)
                      .|+.||+|+|.++.
T Consensus       145 ~Ak~VIlATGTFL~  158 (618)
T PRK05192        145 RAKAVVLTTGTFLR  158 (618)
T ss_pred             ECCEEEEeeCcchh
Confidence            99999999998763

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.62  E-value=4e-14  Score=116.49  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=55.0

Q ss_pred             CceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCch-hhhh
Q 044609          100 SGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHS-MVAQ  170 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S-~~r~  170 (232)
                      +....++...+.+.|.+.+.  + ++++++++|++++..+  +.. +.+.+   .+|.  ++.|++||+|+|.+| .+++
T Consensus       175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~--dg~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~  251 (494)
T PRK05257        175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND--DGS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQ  251 (494)
T ss_pred             CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC--CCC-EEEEEEEcCCCceEEEEcCEEEECCCcchHHHHH
Confidence            44557888899999988765  4 7999999999998754  232 44443   3453  699999999999997 5777


Q ss_pred             hhcCC
Q 044609          171 WLGLS  175 (232)
Q Consensus       171 ~~~~~  175 (232)
                      .+|.+
T Consensus       252 ~~Gi~  256 (494)
T PRK05257        252 KSGIP  256 (494)
T ss_pred             HcCCC
Confidence            77765

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.60  E-value=6.9e-14  Score=118.29  Aligned_cols=70  Identities=14%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchh-hhhhhc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSM-VAQWLG  173 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~-~r~~~~  173 (232)
                      ..++...+...|.+.+.  |++++.+++|+++..+++++.. +.|..   .+++  ++.||.||+|+|.||. +++.++
T Consensus       227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v-~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRI-VGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcE-EEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            45788899988887764  7899999999999875310333 44443   2343  6899999999999984 677665

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.59  E-value=4.7e-14  Score=115.91  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCC--cEEEccEEEecCCCch-hhhh
Q 044609           99 GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDS--TIIKAKVLIGCDGVHS-MVAQ  170 (232)
Q Consensus        99 ~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g--~~~~a~~vV~A~G~~S-~~r~  170 (232)
                      .+....++...+.+.|.+.+.  |++++++++|++++.++  +.. +.+.+   .+|  .+++||+||+|+|.+| .+++
T Consensus       169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~--~~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~  245 (483)
T TIGR01320       169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS--DGS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQ  245 (483)
T ss_pred             eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCe-EEEEEeeccCCceEEEECCEEEECCCcchHHHHH
Confidence            445567899999999988775  89999999999998754  223 44443   334  2689999999999987 5788


Q ss_pred             hhcCCC
Q 044609          171 WLGLSE  176 (232)
Q Consensus       171 ~~~~~~  176 (232)
                      .+|.+.
T Consensus       246 ~~Gi~~  251 (483)
T TIGR01320       246 KSGIPE  251 (483)
T ss_pred             HcCCCc
Confidence            888763

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.58  E-value=2.8e-14  Score=119.22  Aligned_cols=173  Identities=17%  Similarity=0.215  Sum_probs=96.0

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHH-----------HHHHcCChHHHHhh
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWL-----------ALDALGVSHKLTSV   69 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~-----------~l~~~g~~~~~~~~   69 (232)
                      ..+++||+|||||+.|+++|+.|+++|++|+||||.... +.++++..+-..+.+           .++...++..+...
T Consensus         3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~   82 (546)
T PRK11101          3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH   82 (546)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence            445699999999999999999999999999999997543 223322221111111           11110001110000


Q ss_pred             -ccCceeeEEE------------------------EcCCCce-eEEecc--C-CCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609           70 -YAPAKRVFVT------------------------NLGTGAT-QELSYA--G-KSGRIGSGLRSVHRQSLLEALADELP-  119 (232)
Q Consensus        70 -~~~~~~~~~~------------------------~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~-  119 (232)
                       ..+.....+.                        ..+.... ...+.-  . ..+.+.+. ..++...+...+...+. 
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d-g~vdp~rl~~al~~~A~~  161 (546)
T PRK11101         83 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKE  161 (546)
T ss_pred             hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC-cEECHHHHHHHHHHHHHh
Confidence             0000011110                        0000000 000000  0 00111222 46888888888776654 


Q ss_pred             -CCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEecCCCch-hhhhhhcCCCCc
Q 044609          120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIGCDGVHS-MVAQWLGLSESI  178 (232)
Q Consensus       120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~A~G~~S-~~r~~~~~~~~~  178 (232)
                       |++++++++|+++..++  +.. +.|.+.   ++  .++.|+.||+|+|.|+ .+.+..+.+.+.
T Consensus       162 ~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i  224 (546)
T PRK11101        162 HGAQILTYHEVTGLIREG--DTV-CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRM  224 (546)
T ss_pred             CCCEEEeccEEEEEEEcC--CeE-EEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCce
Confidence             88999999999998764  343 445442   33  3799999999999998 466666655443

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.58  E-value=4.3e-14  Score=115.96  Aligned_cols=68  Identities=21%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             eeeehHHHHHHHhhhCC------C--CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhc
Q 044609          103 RSVHRQSLLEALADELP------D--DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLG  173 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~------~--~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~  173 (232)
                      ..++...+.+.|.+.+.      |  ++++++++|++++..+  +.. +.|.+.+| +++||.||+|+|.|| .+.+.+|
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~-~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G  281 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSL-YKIHTNRG-EIRARFVVVSACGYSLLFAQKMG  281 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCe-EEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence            46788888888876653      3  6789999999998764  344 77888877 599999999999998 4667776


Q ss_pred             C
Q 044609          174 L  174 (232)
Q Consensus       174 ~  174 (232)
                      .
T Consensus       282 i  282 (497)
T PTZ00383        282 Y  282 (497)
T ss_pred             C
Confidence            5

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1e-13  Score=112.77  Aligned_cols=137  Identities=19%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      .+.++||+|||||++|+++|+.|.+.|++ ++|+||++..+...+-.                        ..++.... 
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~------------------------ry~~l~~~-   59 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN------------------------RYPGLRLD-   59 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc------------------------cCCceEEC-
Confidence            34568999999999999999999999998 99999998775432100                        00000000 


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcE--EEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI--IKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~--~~a~~v  158 (232)
                       .......+++.+....-........+..+...+.+....-.+.++++|..+..+++ +.. |.|+++++.+  +.||.|
T Consensus        60 -~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~-w~V~~~~~~~~~~~a~~v  136 (443)
T COG2072          60 -SPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKR-WTVTTSDGGTGELTADFV  136 (443)
T ss_pred             -CchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCe-EEEEEcCCCeeeEecCEE
Confidence             00000111111110000111112235566666666544567888888888887764 445 9999988865  559999


Q ss_pred             EecCCCch
Q 044609          159 IGCDGVHS  166 (232)
Q Consensus       159 V~A~G~~S  166 (232)
                      |.|+|.+|
T Consensus       137 V~ATG~~~  144 (443)
T COG2072         137 VVATGHLS  144 (443)
T ss_pred             EEeecCCC
Confidence            99999976

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.55  E-value=3.8e-14  Score=115.73  Aligned_cols=151  Identities=19%  Similarity=0.273  Sum_probs=84.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc-eeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA-KRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~   83 (232)
                      .++|+|||||++|+++|..|.+.|++|+|+||++..+..   ..+.+....  +.+++.........++ ..... . ..
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~---W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~t-n-~p   82 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL---WVYTPKSES--DPLSLDPTRSIVHSSVYESLRT-N-LP   82 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce---eecCCCcCC--CccccCCCCcccchhhhhhhhc-c-CC
Confidence            489999999999999999999999999999999877422   122111100  0011110000000000 00000 0 00


Q ss_pred             Cce---eEEeccCCCC-CCCCceeeeehHHHHHHHhhhCC--CCe--EEeCceEEEEEecCCCCCccEEEEeCCC--c--
Q 044609           84 GAT---QELSYAGKSG-RIGSGLRSVHRQSLLEALADELP--DDT--IQFSSKIAAIDSQTLNGSSAAIINLGDS--T--  151 (232)
Q Consensus        84 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~--  151 (232)
                      ...   ..+++..... ............++.++|.+.+.  ++.  ++++++|+++...+   .. |.|++.++  .  
T Consensus        83 ~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~~-w~V~~~~~~~~~~  158 (461)
T PLN02172         83 RECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---GK-WRVQSKNSGGFSK  158 (461)
T ss_pred             HhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---Ce-EEEEEEcCCCceE
Confidence            000   0011111000 00011223456788888887764  554  89999999998763   34 77776543  2  


Q ss_pred             EEEccEEEecCCCch
Q 044609          152 IIKAKVLIGCDGVHS  166 (232)
Q Consensus       152 ~~~a~~vV~A~G~~S  166 (232)
                      +..+|.||+|+|.++
T Consensus       159 ~~~~d~VIvAtG~~~  173 (461)
T PLN02172        159 DEIFDAVVVCNGHYT  173 (461)
T ss_pred             EEEcCEEEEeccCCC
Confidence            467899999999875

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.54  E-value=5.1e-13  Score=108.72  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCcc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESIN  179 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~~  179 (232)
                      ..++...+.+.|.+.+.  |++++++++|++++.++  +.. ..|.+.++ ++.||.||+|+|.++. +.+.++.+.+..
T Consensus       196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi~  271 (416)
T PRK00711        196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRI-TGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPVY  271 (416)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCcccC
Confidence            35667788888876654  78999999999998764  332 45666554 6999999999999984 344455554443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.54  E-value=3.3e-13  Score=110.53  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=55.5

Q ss_pred             CCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEE---eCCCc--EEEccEEEecCCCch-hhh
Q 044609           99 GSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIIN---LGDST--IIKAKVLIGCDGVHS-MVA  169 (232)
Q Consensus        99 ~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~---~~~g~--~~~a~~vV~A~G~~S-~~r  169 (232)
                      .+....++...+.+.|.+.+   .+++++++++|++++..++ +.  |.+.   +.+++  +++||+||+|.|.|| .+.
T Consensus       175 ~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~--w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La  251 (497)
T PRK13339        175 IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GG--WEVTVKDRNTGEKREQVADYVFIGAGGGAIPLL  251 (497)
T ss_pred             CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CC--EEEEEEecCCCceEEEEcCEEEECCCcchHHHH
Confidence            34456788888999888766   2689999999999987632 33  5554   34453  689999999999998 577


Q ss_pred             hhhcCC
Q 044609          170 QWLGLS  175 (232)
Q Consensus       170 ~~~~~~  175 (232)
                      +.+|.+
T Consensus       252 ~~~Gi~  257 (497)
T PRK13339        252 QKSGIP  257 (497)
T ss_pred             HHcCCC
Confidence            777765

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.54  E-value=6.4e-15  Score=108.24  Aligned_cols=136  Identities=21%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             EEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCcee
Q 044609            9 VIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQ   87 (232)
Q Consensus         9 ~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (232)
                      +||||||+|+++|..|.+.|++ ++||||.+.++.....   .+      ....+..    .........+.     ...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~---~~------~~~~~~~----~~~~~~~~~~~-----~~~   62 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR---YY------SYTRLHS----PSFFSSDFGLP-----DFE   62 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC---H-------TTTT-BS----SSCCTGGSS-------CCC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE---eC------CCCcccc----CccccccccCC-----ccc
Confidence            6999999999999999999999 9999999876432110   00      0000000    00000000000     000


Q ss_pred             EEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           88 ELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                      .+.+..... ...........++.+.|.+.+.  +.+++++++|+++.+++   +. |.|++.+++++.|+.||+|+|..
T Consensus        63 ~~~~~~~~~-~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~-w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   63 SFSFDDSPE-WRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG---DG-WTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HSCHHHHHH-HHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET---TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred             ccccccCCC-CCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec---cE-EEEEEEecceeeeeeEEEeeecc
Confidence            000000000 0001123556667776666553  67899999999999984   44 99999999889999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      |.
T Consensus       138 ~~  139 (203)
T PF13738_consen  138 SH  139 (203)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

...

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.53  E-value=2.3e-13  Score=116.56  Aligned_cols=158  Identities=22%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--cCcceeeeec-c------c-HHHHH-----HHcCChHHHHhhc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RATGAALTLS-P------N-AWLAL-----DALGVSHKLTSVY   70 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--~~~~~~~~~~-~------~-~~~~l-----~~~g~~~~~~~~~   70 (232)
                      +||+|||||++|+++|+.|+++|++|+|+|++..+  +.+++..++. +      . ..+..     ....++..+.+..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~  340 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAG  340 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999998643  2222211110 0      0 01110     0111122221100


Q ss_pred             c----CceeeEEEEcCCCc------------------------e-eEEecc-CCCCCCCCceeeeehHHHHHHHhhhCC-
Q 044609           71 A----PAKRVFVTNLGTGA------------------------T-QELSYA-GKSGRIGSGLRSVHRQSLLEALADELP-  119 (232)
Q Consensus        71 ~----~~~~~~~~~~~~~~------------------------~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~-  119 (232)
                      .    ...+......+...                        . ...+.. ...+.+.+...++++..+.+.|.+.+. 
T Consensus       341 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~  420 (662)
T PRK01747        341 VAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ  420 (662)
T ss_pred             CCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc
Confidence            0    00111111101000                        0 000000 011112334457888999999998875 


Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      +++++++++|+++...+   .. +.|.+.++..++||.||+|+|.+|.
T Consensus       421 Gv~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        421 QLTIHFGHEVARLERED---DG-WQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             CcEEEeCCEeeEEEEeC---CE-EEEEECCCcEEECCEEEECCCCCcc
Confidence            68999999999998764   34 6688888877889999999999984

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.52  E-value=9e-14  Score=114.30  Aligned_cols=62  Identities=13%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      +....+++..+.+.|.+.+.  |++++.+++|++++..    .. +.|.+.+| ++.||.||+|+|.||.
T Consensus       175 ~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~----~~-~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       175 PVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG----QP-AVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             CCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC----Cc-eEEEeCCc-EEECCEEEEccccccc
Confidence            34467889999999987764  8999999999999742    33 66777777 5999999999999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.51  E-value=1.6e-13  Score=110.43  Aligned_cols=135  Identities=23%  Similarity=0.288  Sum_probs=87.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHH----HHHHHcCChHHHHhhccCceeeEE
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAW----LALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      ++..+|+|||||+|||++|..|.+.|++++++||....+...   .+.++.-    ..++.+                ..
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW---~y~~~~~~~~ss~Y~~l----------------~t   64 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW---KYTENVEVVHSSVYKSL----------------RT   64 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE---eecCcccccccchhhhh----------------hc
Confidence            456899999999999999999999999999999998874321   1111100    001111                00


Q ss_pred             EEcCCCce---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC----CCeEEeCceEEEEEecCCCCCccEEEEeCCC-
Q 044609           79 TNLGTGAT---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP----DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-  150 (232)
Q Consensus        79 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-  150 (232)
                      .  ...+.   ..++++..     ...+..++.++.++|.+.++    ...+.++++|..+....+  .. |.|.+.+. 
T Consensus        65 n--~pKe~~~~~dfpf~~~-----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gk-W~V~~~~~~  134 (448)
T KOG1399|consen   65 N--LPKEMMGYSDFPFPER-----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GK-WRVTTKDNG  134 (448)
T ss_pred             c--CChhhhcCCCCCCccc-----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--Cc-eeEEEecCC
Confidence            0  00000   11222211     12234566688888888775    347999999999987642  23 88877654 


Q ss_pred             ---cEEEccEEEecCCCch
Q 044609          151 ---TIIKAKVLIGCDGVHS  166 (232)
Q Consensus       151 ---~~~~a~~vV~A~G~~S  166 (232)
                         ....+|+||+|+|.+.
T Consensus       135 ~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  135 TQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             cceeEEEeeEEEEcccCcC
Confidence               3678999999999993

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.50  E-value=1.4e-13  Score=108.29  Aligned_cols=143  Identities=22%  Similarity=0.320  Sum_probs=84.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEE-ecCCCCcCcceeeeeccc----HHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVL-EKSDGLRATGAALTLSPN----AWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~vi-E~~~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ||+|||||.||+.+|+.+||.|.+|+|+ ++.+....-++.-++...    ..+.++.+|-  .+ ........+.+...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg--~m-~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGG--LM-GRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT---SH-HHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhh--HH-HHHHhHhhhhhhcc
Confidence            8999999999999999999999999999 333333222222222221    1223334431  11 11111223333332


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      ...+       +...  ......++|..+.+.+.+.+   +++++. ..+|+++..++  +.. ..|.+.+|..+.||.|
T Consensus        78 N~sk-------Gpav--~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v-~GV~~~~g~~~~a~~v  144 (392)
T PF01134_consen   78 NRSK-------GPAV--HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKV-KGVVTKDGEEIEADAV  144 (392)
T ss_dssp             STTS--------GGC--TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEE-EEEEETTSEEEEECEE
T ss_pred             cccC-------CCCc--cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeE-EEEEeCCCCEEecCEE
Confidence            1110       0011  12234788988888887765   367776 56899998875  565 8899999999999999


Q ss_pred             EecCCCc
Q 044609          159 IGCDGVH  165 (232)
Q Consensus       159 V~A~G~~  165 (232)
                      |+|+|.+
T Consensus       145 VlaTGtf  151 (392)
T PF01134_consen  145 VLATGTF  151 (392)
T ss_dssp             EE-TTTG
T ss_pred             EEecccc
Confidence            9999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.50  E-value=1.6e-12  Score=104.01  Aligned_cols=58  Identities=16%  Similarity=0.304  Sum_probs=45.1

Q ss_pred             ceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          101 GLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       101 ~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ....++...+...|.+.+   .+++++.+++|++++.    +    .|.+.+|. +.||.||+|+|.+|.
T Consensus       138 ~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~----~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       138 DELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET----G----TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             CCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----C----eEEeCCCc-EEeCEEEECCCCChh
Confidence            345788888888888764   2789999999999852    2    25566665 789999999999974

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.49  E-value=2.5e-14  Score=116.30  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce---eeeecc-cHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA---ALTLSP-NAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~---~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ||+|||||++|+++|+.++|.|.+|+||||.+.++....   ...+.. .... ...-|+..++.............  .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~--~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQE--D   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhcccccc--c
Confidence            899999999999999999999999999999988753211   111111 1111 11112233333222211000000  0


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC--CCCeEEeCceEEEEEecCCCCCccEEEEeCC--C-cEEEccE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL--PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S-TIIKAKV  157 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g-~~~~a~~  157 (232)
                      .     ..        ......+++..+...|.+.+  .++++++++.|.++..++  +.. ..|.+.+  | .+++|++
T Consensus        78 ~-----~~--------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i-~~V~~~~~~g~~~i~A~~  141 (428)
T PF12831_consen   78 R-----YG--------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG--GRI-TGVIVETKSGRKEIRAKV  141 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-----cc--------cccccccccccccccccccccccccccccccccccccccc--ccc-cccccccccccccccccc
Confidence            0     00        00001233333333333333  289999999999999875  344 5555543  4 4899999


Q ss_pred             EEecCCCchhhhhhhcC
Q 044609          158 LIGCDGVHSMVAQWLGL  174 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~  174 (232)
                      +|+|||. ..+..+.|.
T Consensus       142 ~IDaTG~-g~l~~~aG~  157 (428)
T PF12831_consen  142 FIDATGD-GDLAALAGA  157 (428)
T ss_dssp             -----------------
T ss_pred             ccccccc-ccccccccc
Confidence            9999995 455555544

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.49  E-value=2.3e-12  Score=103.89  Aligned_cols=122  Identities=15%  Similarity=0.008  Sum_probs=71.2

Q ss_pred             CCceeeeehHHHHHHHhhhCC--C-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhh-hhhhc-
Q 044609           99 GSGLRSVHRQSLLEALADELP--D-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV-AQWLG-  173 (232)
Q Consensus        99 ~~~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~-r~~~~-  173 (232)
                      .+....++...+.+.|.+.+.  + ..+..++.+..+...   +.. +.|.+.+|. +.|+.||+|+|.++.. -..++ 
T Consensus       147 ~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~---~~~-~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~  221 (387)
T COG0665         147 DPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD---GRV-VGVETDGGT-IEADKVVLAAGAWAGELAATLGE  221 (387)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec---CcE-EEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCC
Confidence            444557788889998888764  5 456668889888765   123 788888888 9999999999999853 33444 


Q ss_pred             CCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEE
Q 044609          174 LSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL  225 (232)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  225 (232)
                      ...+..+.......+...+...................++.|..++.+.+..
T Consensus       222 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~  273 (387)
T COG0665         222 LPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGG  273 (387)
T ss_pred             CcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEee
Confidence            3333333222222121121111100000233333334667777777655544

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.1e-12  Score=99.61  Aligned_cols=113  Identities=25%  Similarity=0.342  Sum_probs=76.8

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ++.|||+||||||+|+++|.+++|.+++ ++|+|+.. ++..                   ...          ..    
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~-------------------~~~----------~~----   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQ-------------------LTK----------TT----   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCc-------------------ccc----------ce----
Confidence            3569999999999999999999999999 66666543 2100                   000          00    


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                           ..-+++...       ..+.-..+.+.+.+++.  ++++.. ..|.+++...   +. +.|.+.++. ++|+.||
T Consensus        47 -----~venypg~~-------~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~-F~v~t~~~~-~~ak~vI  108 (305)
T COG0492          47 -----DVENYPGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GP-FKVKTDKGT-YEAKAVI  108 (305)
T ss_pred             -----eecCCCCCc-------cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ce-EEEEECCCe-EEEeEEE
Confidence                 001122111       12455677777777763  677766 6777777653   24 889999998 9999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      +|+|....
T Consensus       109 iAtG~~~~  116 (305)
T COG0492         109 IATGAGAR  116 (305)
T ss_pred             ECcCCccc
Confidence            99999864

>PLN02661 Putative thiazole synthesis

Probab=99.46  E-value=1.7e-12  Score=100.90  Aligned_cols=129  Identities=22%  Similarity=0.301  Sum_probs=78.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcce--eeee-----cccHHHHHHHcCChHHHHhhccCcee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGA--ALTL-----SPNAWLALDALGVSHKLTSVYAPAKR   75 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~--~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~~~   75 (232)
                      .++||+|||||++|+++|+.|++. |++|+||||...++...+  +..+     .....++|+++|+.-         + 
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~f---------d-  160 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPY---------D-  160 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCc---------c-
Confidence            458999999999999999999986 899999999877643211  1101     111223344443311         0 


Q ss_pred             eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEe-----
Q 044609           76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINL-----  147 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-----  147 (232)
                                       ...+   + ....+...+.+.|.+.+   ++++++.++.++++..++  +.. ..+..     
T Consensus       161 -----------------~~dg---y-~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grV-aGVVvnw~~v  216 (357)
T PLN02661        161 -----------------EQEN---Y-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRV-GGVVTNWALV  216 (357)
T ss_pred             -----------------cCCC---e-eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEE-EEEEeecchh
Confidence                             0000   0 00112234445555433   378999999999998764  443 33332     


Q ss_pred             -CC--C------cEEEccEEEecCCCch
Q 044609          148 -GD--S------TIIKAKVLIGCDGVHS  166 (232)
Q Consensus       148 -~~--g------~~~~a~~vV~A~G~~S  166 (232)
                       .+  +      ..+.|+.||+|+|...
T Consensus       217 ~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        217 AQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             hhccCCCCccceeEEECCEEEEcCCCCC
Confidence             11  1      2689999999999765

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.45  E-value=2.7e-12  Score=99.80  Aligned_cols=158  Identities=23%  Similarity=0.256  Sum_probs=102.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCChHHHHh----hccC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL------GIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVSHKLTS----VYAP   72 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~------g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~----~~~~   72 (232)
                      ..+||+|||||||||++|+.|.+.      .++|.|+||...++.+. .|..+.|.++.   +|  ..+.++    ...+
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~ald---EL--~P~wke~~apl~t~  149 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALD---EL--LPDWKEDGAPLNTP  149 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhh---hh--CcchhhcCCccccc
Confidence            358999999999999999998762      47899999999886542 34455554433   22  122222    2233


Q ss_pred             ceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC-
Q 044609           73 AKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD-  149 (232)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-  149 (232)
                      .+.-.+..........++......  ....+.+.-..++++|-+.++  |++|+-+..+.++..+++ |.. ..+.+.| 
T Consensus       150 vT~d~~~fLt~~~~i~vPv~~pm~--NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsV-kGiaT~D~  225 (621)
T KOG2415|consen  150 VTSDKFKFLTGKGRISVPVPSPMD--NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSV-KGIATNDV  225 (621)
T ss_pred             ccccceeeeccCceeecCCCcccc--cCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcE-eeEeeccc
Confidence            334344433332222222211111  334678889999999998876  889999998888888765 454 6666654 


Q ss_pred             -----C---------cEEEccEEEecCCCchhhhh
Q 044609          150 -----S---------TIIKAKVLIGCDGVHSMVAQ  170 (232)
Q Consensus       150 -----g---------~~~~a~~vV~A~G~~S~~r~  170 (232)
                           |         -.+.|+..|.|.|.+..+.+
T Consensus       226 GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lsk  260 (621)
T KOG2415|consen  226 GISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSK  260 (621)
T ss_pred             cccCCCCccccccccceecceeEEEeccccchhHH
Confidence                 2         25889999999999865543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.42  E-value=3.8e-12  Score=99.09  Aligned_cols=111  Identities=28%  Similarity=0.425  Sum_probs=74.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      |||+|||||++|+++|..|++.|++|+|||+.. ++  + .+...             .            .+       
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g-~~~~~-------------~------------~~-------   44 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PG--G-QLTTT-------------T------------EV-------   44 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CC--c-ceeec-------------c------------cc-------
Confidence            699999999999999999999999999999875 21  1 00000             0            00       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                         ..++...       ..+....+.+.+.+.+.  ++++++ ++|+++..++   .. +.+.+.++.++.+|.||+|+|
T Consensus        45 ---~~~~~~~-------~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~~-~~v~~~~~~~~~~d~liiAtG  109 (300)
T TIGR01292        45 ---ENYPGFP-------EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---RP-FKVKTGDGKEYTAKAVIIATG  109 (300)
T ss_pred             ---cccCCCC-------CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---Ce-eEEEeCCCCEEEeCEEEECCC
Confidence               0000000       01222344445544432  788888 8999998763   44 778888888999999999999


Q ss_pred             Cchh
Q 044609          164 VHSM  167 (232)
Q Consensus       164 ~~S~  167 (232)
                      ....
T Consensus       110 ~~~~  113 (300)
T TIGR01292       110 ASAR  113 (300)
T ss_pred             CCcc
Confidence            8653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR00275 flavoprotein, HI0933 family

Probab=99.39  E-value=5.4e-12  Score=101.89  Aligned_cols=157  Identities=25%  Similarity=0.271  Sum_probs=85.1

Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----cceeeeeccc---HHHHHHHcCChHH-HHhhccCc--eeeEE
Q 044609            9 VIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TGAALTLSPN---AWLALDALGVSHK-LTSVYAPA--KRVFV   78 (232)
Q Consensus         9 ~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~~~~~~~~~---~~~~l~~~g~~~~-~~~~~~~~--~~~~~   78 (232)
                      +|||||++|+++|+.|+++|++|+|+||.+.++.    ++.+.....+   ....++..+-... +......+  .....
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            6999999999999999999999999999887632    1212111111   1111122211100 00000000  00000


Q ss_pred             EEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           79 TNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                      +....+......   ..+...+  ..-....+.+.|.+.+.  +++++++++|+++..++   .. +.+.+ ++.++.||
T Consensus        81 ~~~~~Gv~~~~~---~~g~~~p--~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~~-~~v~~-~~~~i~ad  150 (400)
T TIGR00275        81 FFESLGLELKVE---EDGRVFP--CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---NG-FGVET-SGGEYEAD  150 (400)
T ss_pred             HHHHcCCeeEEe---cCCEeEC--CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---Ce-EEEEE-CCcEEEcC
Confidence            000000000000   0000000  01123556666666553  78999999999997653   33 66666 45679999


Q ss_pred             EEEecCCCch-----------hhhhhhcCC
Q 044609          157 VLIGCDGVHS-----------MVAQWLGLS  175 (232)
Q Consensus       157 ~vV~A~G~~S-----------~~r~~~~~~  175 (232)
                      .||+|+|.+|           .+.+.+|..
T Consensus       151 ~VIlAtG~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       151 KVILATGGLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             EEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence            9999999977           456667765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.38  E-value=5.2e-12  Score=104.64  Aligned_cols=145  Identities=19%  Similarity=0.184  Sum_probs=84.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-Ccceeeee---cc-cHHHHHHHcCC-hHHHHhhccCceeeEEE
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAALTL---SP-NAWLALDALGV-SHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-~~~~~~~~---~~-~~~~~l~~~g~-~~~~~~~~~~~~~~~~~   79 (232)
                      |||+|||||++|+.+|..+++.|.+|+++|+..... ..++.-..   .. ...+.++.+|- ...+    .....+.+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~----~d~~~i~~r   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA----ADKAGLQFR   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH----HHhhceehe
Confidence            699999999999999999999999999999974321 11110000   00 01222233321 1110    000111111


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                      ......      .. ..  ......+++..+.+.+.+.+.   +++++.+ .|+++..+++ +.. ..|.+.+|..+.|+
T Consensus        77 ~ln~sk------gp-AV--~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~-g~V-~GV~t~~G~~I~Ad  144 (617)
T TIGR00136        77 VLNSSK------GP-AV--RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDN-DEI-KGVVTQDGLKFRAK  144 (617)
T ss_pred             ecccCC------CC-cc--cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecC-CcE-EEEEECCCCEEECC
Confidence            111100      00 00  111236788888887766553   5677654 6777765422 454 77888899899999


Q ss_pred             EEEecCCCch
Q 044609          157 VLIGCDGVHS  166 (232)
Q Consensus       157 ~vV~A~G~~S  166 (232)
                      .||+|+|.++
T Consensus       145 ~VILATGtfL  154 (617)
T TIGR00136       145 AVIITTGTFL  154 (617)
T ss_pred             EEEEccCccc
Confidence            9999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.38  E-value=4.1e-12  Score=104.82  Aligned_cols=36  Identities=39%  Similarity=0.544  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .++||+|||+|++|+++|+.++++|.+|+||||.+.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            568999999999999999999999999999999874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.38  E-value=1.2e-12  Score=108.38  Aligned_cols=138  Identities=18%  Similarity=0.234  Sum_probs=80.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++||++|..|.+.|++++++||.+..+...+-   ..+.     .-|       .....+.... . .+..
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~---~~~~-----~~g-------~~~~y~sl~~-n-~sk~   64 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY---TENP-----EDG-------RSSVYDSLHT-N-TSKE   64 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH---STTC-----CCS-------EGGGSTT-B--S-S-GG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee---CCcC-----CCC-------ccccccceEE-e-eCch
Confidence            47999999999999999999999999999999987533210   0000     000       0000000000 0 0000


Q ss_pred             e---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--C--CeEEeCceEEEEEecCCCC-CccEEEEeCC-Cc--EEE
Q 044609           86 T---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--D--DTIQFSSKIAAIDSQTLNG-SSAAIINLGD-ST--IIK  154 (232)
Q Consensus        86 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~i~~~~~~g-~~~~~v~~~~-g~--~~~  154 (232)
                      .   ..++++.      ......++.++.++|.+.++  +  -.++++++|+++++.++.. ...|.|++.+ |+  +..
T Consensus        65 ~~~fsdfp~p~------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~  138 (531)
T PF00743_consen   65 MMAFSDFPFPE------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEE  138 (531)
T ss_dssp             GSCCTTS-HCC------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEE
T ss_pred             HhcCCCcCCCC------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEE
Confidence            0   0111111      11225788899999988775  3  4799999999998864211 1138888764 43  456


Q ss_pred             ccEEEecCCCch
Q 044609          155 AKVLIGCDGVHS  166 (232)
Q Consensus       155 a~~vV~A~G~~S  166 (232)
                      +|.||+|+|.++
T Consensus       139 fD~VvvatG~~~  150 (531)
T PF00743_consen  139 FDAVVVATGHFS  150 (531)
T ss_dssp             ECEEEEEE-SSS
T ss_pred             eCeEEEcCCCcC
Confidence            899999999987

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.37  E-value=4.8e-12  Score=103.07  Aligned_cols=59  Identities=25%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             ehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEecCCCchh
Q 044609          106 HRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIGCDGVHSM  167 (232)
Q Consensus       106 ~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~A~G~~S~  167 (232)
                      .-..+.+.|.+.++  +++++++++++++..++  +.. ..|...   +|+  ++.|+.||+|+|.++.
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V-~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRV-TGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEE-EEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--Cce-eEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            34567777776654  79999999999999975  444 444443   454  6889999999999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=1.4e-11  Score=103.95  Aligned_cols=41  Identities=41%  Similarity=0.669  Sum_probs=37.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~   41 (232)
                      |++.++||+|||+|.||+++|+.+++.|   .+|+|+||....+
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            7888899999999999999999999998   8999999987653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.36  E-value=1.5e-11  Score=103.75  Aligned_cols=38  Identities=39%  Similarity=0.747  Sum_probs=33.6

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      |.++||+|||||.||+++|+.+++.  |.+|+|+||....
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            3568999999999999999999987  4899999998654

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.36  E-value=1.2e-11  Score=103.98  Aligned_cols=40  Identities=40%  Similarity=0.569  Sum_probs=37.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+++++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus         1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~   40 (566)
T PRK06452          1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT   40 (566)
T ss_pred             CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            7778899999999999999999999999999999998654

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.36  E-value=1.8e-11  Score=102.46  Aligned_cols=37  Identities=43%  Similarity=0.646  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            4689999999999999999999999999999998765

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.35  E-value=3.3e-11  Score=100.18  Aligned_cols=38  Identities=34%  Similarity=0.547  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G   97 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG   97 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            35899999999999999999999999999999988653

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.35  E-value=1.5e-11  Score=100.84  Aligned_cols=34  Identities=38%  Similarity=0.730  Sum_probs=32.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~   40 (232)
                      ||+|||+|.+|+++|+.++++| .+|+||||.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999999 999999998765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.35  E-value=1.8e-11  Score=102.04  Aligned_cols=110  Identities=24%  Similarity=0.410  Sum_probs=76.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .|||+||||||+|+++|..|++.|++|+|+++.  .  .+.-  .        ...+              +.       
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--GG~~--~--------~~~~--------------~~-------  255 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--GGQV--L--------DTMG--------------IE-------  255 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCee--e--------ccCc--------------cc-------
Confidence            489999999999999999999999999999753  2  1100  0        0000              00       


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                           ++..        .......++.+.|.+.+.  +++++.+++|.++...+   .. +.|.+.+|.++.+|.||+|+
T Consensus       256 -----~~~~--------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~~-~~V~~~~g~~i~a~~vViAt  318 (517)
T PRK15317        256 -----NFIS--------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA---GL-IEVELANGAVLKAKTVILAT  318 (517)
T ss_pred             -----ccCC--------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEcCEEEECC
Confidence                 0000        001233455555555443  78999999999998763   33 77788888889999999999


Q ss_pred             CCch
Q 044609          163 GVHS  166 (232)
Q Consensus       163 G~~S  166 (232)
                      |..+
T Consensus       319 G~~~  322 (517)
T PRK15317        319 GARW  322 (517)
T ss_pred             CCCc
Confidence            9965

>PRK07121 hypothetical protein; Validated

Probab=99.35  E-value=3e-11  Score=100.28  Aligned_cols=37  Identities=41%  Similarity=0.647  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.+|+++|+.++++|.+|+||||....
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.33  E-value=2.8e-11  Score=102.11  Aligned_cols=34  Identities=44%  Similarity=0.667  Sum_probs=32.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ||+|||+|++|+++|+.+++.|.+|+||||....
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            8999999999999999999999999999998754

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.33  E-value=1e-11  Score=101.16  Aligned_cols=38  Identities=39%  Similarity=0.624  Sum_probs=33.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+ +++||+|||+|.||+++|+.++ .|.+|+||||.+..
T Consensus         1 m~-~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          1 MN-LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             CC-ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            55 6789999999999999999975 79999999998765

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.33  E-value=3.1e-11  Score=102.57  Aligned_cols=37  Identities=32%  Similarity=0.517  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +++||+|||+|.||+++|+.+++.|.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            4589999999999999999999999999999986554

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.32  E-value=5.3e-11  Score=97.52  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCC
Q 044609           99 GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS  175 (232)
Q Consensus        99 ~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~  175 (232)
                      .+.-..+++..+.++|+..+.  |+.|.+++.|+++.-..  +.. +.|+++.|. ++|..+|.|+|.|. .+-++.++.
T Consensus       178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~-~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvk  253 (856)
T KOG2844|consen  178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET--DKF-GGVETPHGS-IETECVVNAAGVWAREVGAMAGVK  253 (856)
T ss_pred             cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCc-cceeccCcc-eecceEEechhHHHHHhhhhcCCc
Confidence            455567899999999998775  88999999999998765  344 789999997 99999999999996 456666888


Q ss_pred             CCcccceeEEEEeeecCCC
Q 044609          176 ESINSGRSSVRGLAVFPHG  194 (232)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~  194 (232)
                      .|-.+..++|..+..++.-
T Consensus       254 vPL~p~~H~YvvT~~IeGi  272 (856)
T KOG2844|consen  254 VPLVPMHHAYVVTSRIEGV  272 (856)
T ss_pred             ccceeeeeeEEEecccCCc
Confidence            8888888888877666643

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=5.5e-11  Score=100.43  Aligned_cols=39  Identities=36%  Similarity=0.495  Sum_probs=35.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |++.++||+|||+|.||+++|+.+++.|.+|+||||...
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            455668999999999999999999999999999999754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.31  E-value=4.4e-11  Score=101.58  Aligned_cols=40  Identities=43%  Similarity=0.450  Sum_probs=36.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+++++||+|||+|.||+++|+.+++.|.+|+||||....
T Consensus         4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ccceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            4556789999999999999999999999999999998654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.31  E-value=3.2e-11  Score=101.32  Aligned_cols=113  Identities=22%  Similarity=0.398  Sum_probs=72.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+ +.|||+||||||+|+++|..|++.|++|+|||+.. .+  |. +....                             
T Consensus         1 m~-~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~G--G~-~~~~~-----------------------------   46 (555)
T TIGR03143         1 ME-EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FG--GQ-ITITS-----------------------------   46 (555)
T ss_pred             CC-CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CC--ce-EEecc-----------------------------
Confidence            54 45999999999999999999999999999999853 21  10 00000                             


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                        .    ...++.        ........+.+.+.+.+.  +++++ +++|+++..+   +.. +.|.+.++ .+.++.|
T Consensus        47 --~----i~~~pg--------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~---~~~-~~V~~~~g-~~~a~~l  106 (555)
T TIGR03143        47 --E----VVNYPG--------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD---GDI-KTIKTARG-DYKTLAV  106 (555)
T ss_pred             --c----cccCCC--------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec---CCE-EEEEecCC-EEEEeEE
Confidence              0    000010        001223445555554432  67764 6788888765   343 56666665 5899999


Q ss_pred             EecCCCchh
Q 044609          159 IGCDGVHSM  167 (232)
Q Consensus       159 V~A~G~~S~  167 (232)
                      |+|+|.++.
T Consensus       107 VlATGa~p~  115 (555)
T TIGR03143       107 LIATGASPR  115 (555)
T ss_pred             EECCCCccC
Confidence            999999764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.30  E-value=4.7e-11  Score=100.65  Aligned_cols=38  Identities=34%  Similarity=0.483  Sum_probs=33.9

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      +.++||+|||+|.||+++|+.+++.  |.+|+|+||....
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            5678999999999999999999986  5899999998654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.30  E-value=3.3e-11  Score=102.68  Aligned_cols=41  Identities=37%  Similarity=0.638  Sum_probs=38.0

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |.+.++||+|||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            78888999999999999999999999999999999987653

>TIGR00551 nadB L-aspartate oxidase

Probab=99.30  E-value=3.6e-11  Score=99.59  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             HHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC-C--cEEEccEEEecCCCchhhh
Q 044609          108 QSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-S--TIIKAKVLIGCDGVHSMVA  169 (232)
Q Consensus       108 ~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g--~~~~a~~vV~A~G~~S~~r  169 (232)
                      ..+.+.|.+.+   +++++++++.|+++..++  +.. ..+...+ +  ..+.|+.||+|+|.+|.+.
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v-~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~  192 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRV-VGVWVWNRETVETCHADAVVLATGGAGKLY  192 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEE-EEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence            45667776654   378999999999998754  443 4343332 3  3689999999999999753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.30  E-value=4.8e-11  Score=99.47  Aligned_cols=110  Identities=19%  Similarity=0.325  Sum_probs=74.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .|||+||||||+|+++|..|++.|++|+|+|..  ++  |.  .        ....              .+.       
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G--G~--~--------~~~~--------------~~~-------  256 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG--GQ--V--------KDTV--------------GIE-------  256 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC--Cc--c--------ccCc--------------Ccc-------
Confidence            489999999999999999999999999999742  11  10  0        0000              000       


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                           .+...    .    ......+.+.+.+.+.  +++++.+++|.++..++   .. +.+.+.+|.++.+|.||+|+
T Consensus       257 -----~~~~~----~----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~~-~~v~~~~g~~i~~d~lIlAt  319 (515)
T TIGR03140       257 -----NLISV----P----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED---GL-IVVTLESGEVLKAKSVIVAT  319 (515)
T ss_pred             -----ccccc----C----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence                 00000    0    0123344444444332  78999999999998653   33 77778888889999999999


Q ss_pred             CCch
Q 044609          163 GVHS  166 (232)
Q Consensus       163 G~~S  166 (232)
                      |...
T Consensus       320 Ga~~  323 (515)
T TIGR03140       320 GARW  323 (515)
T ss_pred             CCCc
Confidence            9864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.29  E-value=6.1e-11  Score=94.14  Aligned_cols=70  Identities=17%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             eeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEecCCCch-hhhhhhc
Q 044609          103 RSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIGCDGVHS-MVAQWLG  173 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~A~G~~S-~~r~~~~  173 (232)
                      .-++-..|.+.|.+.+   ++++++++++|+++++.++ +.  |.|...|   |  .+++|++|++..|.+| .+.+..|
T Consensus       176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~--W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksg  252 (488)
T PF06039_consen  176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR--WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSG  252 (488)
T ss_pred             ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC--EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcC
Confidence            3455566777776655   3789999999999999764 43  6666532   2  4899999999888888 4566666


Q ss_pred             CC
Q 044609          174 LS  175 (232)
Q Consensus       174 ~~  175 (232)
                      ++
T Consensus       253 i~  254 (488)
T PF06039_consen  253 IP  254 (488)
T ss_pred             Ch
Confidence            54

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.28  E-value=1e-10  Score=98.50  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=83.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcc----eeee--ec-ccHHH-HHHHc---C--C------
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATG----AALT--LS-PNAWL-ALDAL---G--V------   62 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~----~~~~--~~-~~~~~-~l~~~---g--~------   62 (232)
                      .++||+|||+|+||+++|+.+++.  |.+|+|+||....+...    .++.  .. ..+.+ .++..   |  +      
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv   81 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV   81 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence            468999999999999999999986  58999999987653221    1111  10 01111 11110   0  1      


Q ss_pred             ----------hHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeee---ehHHHHHHHhhhC---CCCeEEeC
Q 044609           63 ----------SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSV---HRQSLLEALADEL---PDDTIQFS  126 (232)
Q Consensus        63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~---~~~~i~~~  126 (232)
                                .+.+.+.+.+     +....++......+... .  .......   .-..+.+.|.+.+   ++++++.+
T Consensus        82 ~~l~~~s~~~i~~L~~~Gv~-----f~~~~~g~~~~~~~gg~-~--~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~  153 (580)
T TIGR01176        82 EYFVAEAPKEMVQLEHWGCP-----WSRKPDGRVNVRRFGGM-K--KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDE  153 (580)
T ss_pred             HHHHHHhHHHHHHHHHcCCc-----cEecCCCceeeeccCCc-c--CCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence                      0111122222     21111221111011100 0  0000000   1245666666544   36899999


Q ss_pred             ceEEEEEecCCCCCccEEE---EeCCCc--EEEccEEEecCCCchhh
Q 044609          127 SKIAAIDSQTLNGSSAAII---NLGDST--IIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       127 ~~v~~i~~~~~~g~~~~~v---~~~~g~--~~~a~~vV~A~G~~S~~  168 (232)
                      +.++++..++  +.. ..+   ...+|.  .+.|+.||+|||.++.+
T Consensus       154 ~~v~~Li~~~--g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       154 WFVTDLLVDD--GRV-CGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             eEEEEEEeeC--CEE-EEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            9999998764  443 333   334664  68899999999999864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=1.2e-10  Score=98.61  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~   47 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT   47 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4589999999999999999999999999999998653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.28  E-value=1.3e-11  Score=90.79  Aligned_cols=139  Identities=24%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-------ce-----eeeecccHHHHHHHcCChHHHHhhccCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-------GA-----ALTLSPNAWLALDALGVSHKLTSVYAPAK   74 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-------~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~   74 (232)
                      +|+|||+|++|+++|+.|...|+.|+|+||+...+.+       +.     ...+.+.....++..   +.+.+.+.. +
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~glV-~   78 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGLV-D   78 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCce-e
Confidence            7999999999999999999999999999998765321       11     111111111111111   111111110 0


Q ss_pred             ee--EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-
Q 044609           75 RV--FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-  151 (232)
Q Consensus        75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-  151 (232)
                      .+  ..+......     ....... .+.......+.+.+.|..   ..+|.++++|+.+...+   +. |++++++|. 
T Consensus        79 ~W~~~~~~~~~~~-----~~~~~d~-~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~---~~-W~l~~~~g~~  145 (331)
T COG3380          79 VWTPAVWTFTGDG-----SPPRGDE-DPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTD---ND-WTLHTDDGTR  145 (331)
T ss_pred             eccccccccccCC-----CCCCCCC-CccccCcchHHHHHHHhc---cchhhhhhhhhhheecC---Ce-eEEEecCCCc
Confidence            00  000000000     0011000 111112234556665554   56899999999998874   44 999997764 


Q ss_pred             EEEccEEEecC
Q 044609          152 IIKAKVLIGCD  162 (232)
Q Consensus       152 ~~~a~~vV~A~  162 (232)
                      ...+|.||+|-
T Consensus       146 ~~~~d~vvla~  156 (331)
T COG3380         146 HTQFDDVVLAI  156 (331)
T ss_pred             ccccceEEEec
Confidence            67888888874

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.28  E-value=6.3e-11  Score=97.56  Aligned_cols=34  Identities=29%  Similarity=0.529  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +||+|||+|++|+++|+.+++.|.+|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5999999999999999999999999999999854

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.28  E-value=5.6e-11  Score=99.82  Aligned_cols=41  Identities=34%  Similarity=0.588  Sum_probs=37.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |.+.++||+|||+|++|+++|+.+++.|++|+||||.+..+
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~g   43 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYG   43 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            55677999999999999999999999999999999987653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.27  E-value=9.2e-11  Score=99.42  Aligned_cols=37  Identities=38%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            4589999999999999999999999999999998764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.26  E-value=2.5e-11  Score=102.68  Aligned_cols=36  Identities=33%  Similarity=0.624  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      ++||+|||+|.||+++|+.+++.  |.+|+||||....
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            58999999999999999999998  9999999998754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.26  E-value=2.4e-11  Score=101.99  Aligned_cols=37  Identities=38%  Similarity=0.777  Sum_probs=34.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+ .++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus         1 ~~-~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          1 MA-MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CC-ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            55 67999999999999999999999999999999998

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.25  E-value=1.8e-11  Score=100.94  Aligned_cols=41  Identities=34%  Similarity=0.571  Sum_probs=37.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |.|.+|||+||||||+|+++|+.|++.|++|+||||.+..+
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G   41 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG   41 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence            78888999999999999999999999999999999976553

>PLN02568 polyamine oxidase

Probab=99.25  E-value=3.5e-10  Score=94.28  Aligned_cols=54  Identities=30%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             hHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609          107 RQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus       107 ~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                      ...|.+.|.+.+++..|+++++|++|...+   .. +.|.+.+|+++.||.||.|.=.
T Consensus       241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~---~~-v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        241 YLSVIEALASVLPPGTIQLGRKVTRIEWQD---EP-VKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHHHhhCCCCEEEeCCeEEEEEEeC---Ce-EEEEEcCCCEEEcCEEEEcCCH
Confidence            356888998888766899999999999874   44 8888999988999999998743

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.24  E-value=1.8e-10  Score=97.71  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ++||+|||+|.||+++|+.+++.|.+|+|+||....+
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~   86 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR   86 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence            4799999999999999999999999999999987543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.24  E-value=2.1e-10  Score=96.78  Aligned_cols=37  Identities=35%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++.|.+|+|+||....
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            3479999999999999999999999999999998654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.24  E-value=2.2e-10  Score=96.74  Aligned_cols=39  Identities=36%  Similarity=0.398  Sum_probs=34.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |...++||+|||+|.+|+++|+.+++. .+|+|+||....
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~   39 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT   39 (583)
T ss_pred             CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence            444678999999999999999999986 999999998654

>PRK08275 putative oxidoreductase; Provisional

Probab=99.24  E-value=2.4e-10  Score=96.14  Aligned_cols=37  Identities=35%  Similarity=0.619  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++.  |.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            458999999999999999999986  7899999998764

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.23  E-value=1.4e-10  Score=96.43  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc----eeeee--cc-cHHH-HHHHc-----CC--------
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG----AALTL--SP-NAWL-ALDAL-----GV--------   62 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~----~~~~~--~~-~~~~-~l~~~-----g~--------   62 (232)
                      .++||+|||+|.||+++|+.+++ |.+|+|+||.+..+...    .++..  .+ .+.+ .++..     ++        
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            46899999999999999999976 89999999987643221    11211  11 1111 11111     00        


Q ss_pred             --------hHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCcee----eeehHHHHHHHhhhCC-CCeEEeCceE
Q 044609           63 --------SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLR----SVHRQSLLEALADELP-DDTIQFSSKI  129 (232)
Q Consensus        63 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~i~~~~~v  129 (232)
                              .+.+.+.+.+++     ....+.. .......+.  .....    ...-..+.+.|.+.+. +++++.++.+
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~-----~~~~g~~-~~~~~gg~~--~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v  152 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFD-----GDETGPL-HLGKEGAHR--KRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMV  152 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccc-----cCCCCce-eeccCcCcc--CCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEh
Confidence                    011122222221     0011110 000000000  00000    0112456777766554 8999999999


Q ss_pred             EEEEecCCCCCccEEEEe--CCCc--EEEccEEEecCCCchh
Q 044609          130 AAIDSQTLNGSSAAIINL--GDST--IIKAKVLIGCDGVHSM  167 (232)
Q Consensus       130 ~~i~~~~~~g~~~~~v~~--~~g~--~~~a~~vV~A~G~~S~  167 (232)
                      +++..++  +.. ..+..  .+++  .+.|+.||+|+|.++.
T Consensus       153 ~~Li~~~--g~v-~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        153 IDLIIEN--GRC-IGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             hheeecC--CEE-EEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            9997654  443 43433  2343  6889999999999875

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.22  E-value=3e-10  Score=95.37  Aligned_cols=35  Identities=31%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .++||+|||+|.||+++|+.+ +.|.+|+|+||.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            458999999999999999999 89999999999764

>TIGR02730 carot_isom carotene isomerase

Probab=99.22  E-value=1.4e-10  Score=96.30  Aligned_cols=63  Identities=19%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG  173 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~  173 (232)
                      ..+.+.|.+.++  |++++++++|++|..++  +.. ..|.+.+|+++.||.||.|.|.+..++++++
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~-~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~  293 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN--GKA-VGVKLADGEKIYAKRIVSNATRWDTFGKLLK  293 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcE-EEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence            467777777664  79999999999998764  454 7788889988999999999999988877764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.21  E-value=1.9e-11  Score=97.82  Aligned_cols=58  Identities=26%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHH
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDA   59 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~   59 (232)
                      ++.+|||+|||||..|.-||.-.+.+|+++.++|++++. +.++++..+.+.+.+.|++
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek  122 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK  122 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHH
Confidence            345699999999999999999999999999999999876 4455666666666665543

>PRK10262 thioredoxin reductase; Provisional

Probab=99.18  E-value=6.5e-10  Score=87.47  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +..+||+||||||+|+++|..|+++|+++++||+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            35699999999999999999999999999999964

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.18  E-value=3.8e-10  Score=95.36  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+.||+|||+|.||+++|+.+++.|.+|+||||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            3569999999999999999999999999999998754

>PLN02815 L-aspartate oxidase

Probab=99.17  E-value=4.4e-10  Score=94.66  Aligned_cols=37  Identities=30%  Similarity=0.494  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|.||+++|+.+++.| +|+|+||....+
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g   64 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE   64 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence            4589999999999999999999999 999999988653

>PRK14694 putative mercuric reductase; Provisional

Probab=99.17  E-value=2.3e-10  Score=94.48  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |..++|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            45577999999999999999999999999999999863

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.16  E-value=6.3e-10  Score=78.10  Aligned_cols=135  Identities=21%  Similarity=0.201  Sum_probs=73.2

Q ss_pred             EEECCCHHHHHHHHHHHhC-----CCcEEEEecCCCCcCcceeeeeccc-HHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            9 VIIGAGIAGLATAVALRRL-----GIKALVLEKSDGLRATGAALTLSPN-AWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         9 ~IvG~G~~G~~~A~~L~~~-----g~~v~viE~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      +|||+|++|++++..|.++     ..+|+|||+.+.    ++|..+.+. ....  .++...         ..+......
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~----G~G~~~~~~~~~~~--llN~~a---------~~~s~~~~~   65 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF----GAGGAYRPDQPPSH--LLNTPA---------DQMSLFPDD   65 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc----cccccCCCCCChHH--hhcccc---------ccccccccc
Confidence            5999999999999999987     468999999543    223232222 0000  011100         011110000


Q ss_pred             C-CceeEEecc-C---CCCCCCCceeeeehHHHHHHHhhh-------CC-CCeEE-eCceEEEEEecCCCCCccEEEEeC
Q 044609           83 T-GATQELSYA-G---KSGRIGSGLRSVHRQSLLEALADE-------LP-DDTIQ-FSSKIAAIDSQTLNGSSAAIINLG  148 (232)
Q Consensus        83 ~-~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~~~i~-~~~~v~~i~~~~~~g~~~~~v~~~  148 (232)
                      . .....|--. .   ...  .....+..|..+-++|.+.       ++ ++++. ...+|+++...+   .. +.+.+.
T Consensus        66 ~~~~f~~Wl~~~~~~~~~~--~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~---~~-~~v~~~  139 (156)
T PF13454_consen   66 PGDDFVDWLRANGADEAEE--IDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD---DG-YRVVTA  139 (156)
T ss_pred             CCCCHHHHHHhcCcccccc--cccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC---Cc-EEEEEC
Confidence            0 000000000 0   000  1112245565544444432       22 44443 366999998874   44 778889


Q ss_pred             CCcEEEccEEEecCCC
Q 044609          149 DSTIIKAKVLIGCDGV  164 (232)
Q Consensus       149 ~g~~~~a~~vV~A~G~  164 (232)
                      +|..+.+|.||+|+|.
T Consensus       140 ~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  140 DGQSIRADAVVLATGH  155 (156)
T ss_pred             CCCEEEeCEEEECCCC
Confidence            9999999999999996

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.16  E-value=2.8e-10  Score=93.34  Aligned_cols=36  Identities=36%  Similarity=0.519  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++|||+||||||+|+++|+.|+++|++|+|||+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            469999999999999999999999999999999753

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.16  E-value=5.9e-10  Score=93.36  Aligned_cols=36  Identities=39%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.||+++|+.+++. .+|+|+||....
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            348999999999999999999986 899999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.15  E-value=2.4e-10  Score=94.37  Aligned_cols=37  Identities=32%  Similarity=0.612  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|||+||||||+|+.+|..|++.|++|+|||+.+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~   39 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL   39 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            4699999999999999999999999999999987544

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.15  E-value=5.8e-10  Score=93.49  Aligned_cols=37  Identities=27%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|.||+++|+.++ .|.+|+||||.+..+
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g   44 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT   44 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence            4689999999999999999986 599999999987643

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.15  E-value=1.1e-08  Score=83.25  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA   45 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~   45 (232)
                      .+|||+|||+|.+|+++|..|++.|.+|+++|+++..+...+
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            469999999999999999999999999999999987754443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.14  E-value=1.3e-10  Score=95.44  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|||+||||||+|+++|..+++.|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            699999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.14  E-value=3.6e-09  Score=87.17  Aligned_cols=54  Identities=30%  Similarity=0.340  Sum_probs=40.2

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      .+.+.|.+.++..+|+++++|++|+.++   +. +.|.+.+|+++.||.||.|.-...
T Consensus       222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-~~v~~~~g~~~~~d~vI~a~p~~~  275 (451)
T PRK11883        222 SLIEALEEKLPAGTIHKGTPVTKIDKSG---DG-YEIVLSNGGEIEADAVIVAVPHPV  275 (451)
T ss_pred             HHHHHHHHhCcCCeEEeCCEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECCCHHH
Confidence            4445555544323799999999998764   44 778888998999999999986643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.14  E-value=3e-10  Score=93.94  Aligned_cols=34  Identities=41%  Similarity=0.657  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ..|||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            5799999999999999999999999999999985

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.14  E-value=1.7e-09  Score=89.34  Aligned_cols=60  Identities=30%  Similarity=0.394  Sum_probs=45.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcce-------eeee--------cccHHHHHHHcCChHH
Q 044609            6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGA-------ALTL--------SPNAWLALDALGVSHK   65 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~-------~~~~--------~~~~~~~l~~~g~~~~   65 (232)
                      .||+|||||++||++|+.|+++    |++|+|+|+++.++...+       .+..        .++..+.++++|+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~   81 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV   81 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence            5899999999999999999998    999999999987642211       1111        2336777888887554

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.14  E-value=1e-09  Score=83.68  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=92.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcceeee---------eccc------HHHHH----HHcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGAALT---------LSPN------AWLAL----DALGV   62 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~~~~---------~~~~------~~~~l----~~~g~   62 (232)
                      -||+|||||.+|++.|+.|.++    |++|+++||+.....++..+.         +..+      +.+.|    +.+++
T Consensus        87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~~  166 (509)
T KOG2853|consen   87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLGI  166 (509)
T ss_pred             cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhcc
Confidence            6999999999999999999863    799999999986543332211         1111      12222    23343


Q ss_pred             hHHHH--hhccCce-----------------------eeEEEEcCCCce-eEEeccCCCC----CC-CCceeeeehHHHH
Q 044609           63 SHKLT--SVYAPAK-----------------------RVFVTNLGTGAT-QELSYAGKSG----RI-GSGLRSVHRQSLL  111 (232)
Q Consensus        63 ~~~~~--~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~~~~~l~  111 (232)
                      .+.-.  -...|..                       +........++. ..+++....+    .+ -....++++-.|+
T Consensus       167 ~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LL  246 (509)
T KOG2853|consen  167 LDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALL  246 (509)
T ss_pred             ccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHHHH
Confidence            21100  0111100                       111111111122 2233321111    00 2234578888888


Q ss_pred             HHHhhhCC--CCeEEeCceEEEEEecCC--------CC-------Cc-cEEEEeCCC--cEEEccEEEecCCCch-hhhh
Q 044609          112 EALADELP--DDTIQFSSKIAAIDSQTL--------NG-------SS-AAIINLGDS--TIIKAKVLIGCDGVHS-MVAQ  170 (232)
Q Consensus       112 ~~l~~~~~--~~~i~~~~~v~~i~~~~~--------~g-------~~-~~~v~~~~g--~~~~a~~vV~A~G~~S-~~r~  170 (232)
                      ..+++.+.  |+.+ .+.+|++.+.+..        ++       .. .+.|...|+  ++++|.++|.|.|+|| .+.+
T Consensus       247 s~~rrk~~~lGv~f-~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvAr  325 (509)
T KOG2853|consen  247 SGIRRKAITLGVQF-VKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVAR  325 (509)
T ss_pred             HHHHHHhhhhcceE-ecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHH
Confidence            88888765  3333 3446777766521        02       00 144455554  4789999999999999 5777


Q ss_pred             hhcCC
Q 044609          171 WLGLS  175 (232)
Q Consensus       171 ~~~~~  175 (232)
                      +.++.
T Consensus       326 lAgIG  330 (509)
T KOG2853|consen  326 LAGIG  330 (509)
T ss_pred             HhccC
Confidence            77654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.13  E-value=1.8e-09  Score=97.62  Aligned_cols=39  Identities=28%  Similarity=0.553  Sum_probs=35.5

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +.+.||+|||+|.||+++|+.+++.|.+|+|+||.+..+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            456899999999999999999999999999999987653

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.13  E-value=6e-10  Score=92.77  Aligned_cols=36  Identities=31%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -+.+.||+|||+|.||+++|+.++  +.+|+|+||.+.
T Consensus         6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            345689999999999999999997  579999999876

>PRK06370 mercuric reductase; Validated

Probab=99.13  E-value=2.1e-10  Score=94.64  Aligned_cols=38  Identities=32%  Similarity=0.443  Sum_probs=34.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.|.+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            45567999999999999999999999999999999863

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.13  E-value=9.9e-10  Score=91.62  Aligned_cols=63  Identities=16%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG  173 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~  173 (232)
                      ..+.+.|.+.++  +++++++++|++|..++  +.. +.|.+.+|+++.||.||.|.+......++++
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~  283 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--GRA-TAVHLADGERLDADAVVSNADLHHTYRRLLP  283 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEE-EEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence            567777776654  78999999999998764  444 7788889988999999999988766665553

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.13  E-value=1.6e-10  Score=95.31  Aligned_cols=37  Identities=38%  Similarity=0.566  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++|||+||||||+|+++|..++++|++|+|||+...+
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~   38 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence            4599999999999999999999999999999985544

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.12  E-value=1.1e-09  Score=92.56  Aligned_cols=39  Identities=38%  Similarity=0.680  Sum_probs=35.5

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +.++||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g   45 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG   45 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            356899999999999999999999999999999988653

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.12  E-value=1.9e-10  Score=97.13  Aligned_cols=37  Identities=43%  Similarity=0.673  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4689999999999999999999999999999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.11  E-value=1.4e-09  Score=89.87  Aligned_cols=35  Identities=40%  Similarity=0.692  Sum_probs=33.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46999999999999999999999999999999875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.11  E-value=4.3e-09  Score=84.82  Aligned_cols=61  Identities=30%  Similarity=0.500  Sum_probs=47.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCc-------ce-------eeeec-ccHHHHHHHcCChHHHH
Q 044609            7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT-------GA-------ALTLS-PNAWLALDALGVSHKLT   67 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~-------~~-------~~~~~-~~~~~~l~~~g~~~~~~   67 (232)
                      .|+|||||++||++|+.|++.+  .+++|+|+++..+.-       |.       .+... +..++.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            5999999999999999999999  999999999765321       11       11122 55677888999988776

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.11  E-value=5.4e-09  Score=86.14  Aligned_cols=59  Identities=36%  Similarity=0.463  Sum_probs=46.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------------e----eeecccHHHHHHHcCChHH
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------------A----LTLSPNAWLALDALGVSHK   65 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------------~----~~~~~~~~~~l~~~g~~~~   65 (232)
                      +|+|||||++|+++|+.|+++|++|+|+|+.+.++...+            |    ....++..+.++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            589999999999999999999999999999986543211            1    1124677888999987643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06116 glutathione reductase; Validated

Probab=99.10  E-value=2.3e-10  Score=94.09  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|||+||||||+|+++|..|++.|++|+|+|+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4699999999999999999999999999999985

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.10  E-value=1.7e-09  Score=91.57  Aligned_cols=32  Identities=31%  Similarity=0.566  Sum_probs=30.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|||+|+||+++|+.+++.|.+|+|+||...
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            79999999999999999999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09897 hypothetical protein; Provisional

Probab=99.10  E-value=9.8e-10  Score=91.09  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~   40 (232)
                      +|+|||||++|+++|..|.+.+  ++|+|||+...+
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            8999999999999999999864  589999998765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.10  E-value=8.8e-10  Score=91.18  Aligned_cols=35  Identities=40%  Similarity=0.630  Sum_probs=32.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      |+ .+|||+||||||+|+++|..+++.|.+|+|||+
T Consensus         1 ~~-~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          1 MS-KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CC-cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            54 469999999999999999999999999999998

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.08  E-value=9e-09  Score=85.08  Aligned_cols=60  Identities=15%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             HHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhh
Q 044609          108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      ..+.+.|.+.++.++|+++++|++|+.++   +. +.|.+.+|+++.||.||.|.- .....+++
T Consensus       226 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~---~~-~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll  285 (463)
T PRK12416        226 STIIDRLEEVLTETVVKKGAVTTAVSKQG---DR-YEISFANHESIQADYVVLAAP-HDIAETLL  285 (463)
T ss_pred             HHHHHHHHHhcccccEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence            35666666665445799999999998874   44 778888888899999999984 33344444

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.08  E-value=2.6e-09  Score=89.84  Aligned_cols=37  Identities=35%  Similarity=0.617  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.08  E-value=2.4e-09  Score=80.86  Aligned_cols=169  Identities=21%  Similarity=0.292  Sum_probs=101.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcC--c-------ceeeeecccHHHH---------H----HH
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA--T-------GAALTLSPNAWLA---------L----DA   59 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~--~-------~~~~~~~~~~~~~---------l----~~   59 (232)
                      ..||.+|||||++|++.|..|.-+  +.+|.|+|+......  +       .+|+.+-|+++++         +    ++
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e  126 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE  126 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence            459999999999999999999876  899999999876532  1       2466677765543         1    11


Q ss_pred             cCCh-------------------HHHHhhc--cCceeeEEEEcCCCceeEE-ecc-CCCCCCCCceeeeehHHHHHHHhh
Q 044609           60 LGVS-------------------HKLTSVY--APAKRVFVTNLGTGATQEL-SYA-GKSGRIGSGLRSVHRQSLLEALAD  116 (232)
Q Consensus        60 ~g~~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~  116 (232)
                      .++.                   +.+...+  ....++.+....+  ...+ ++- .......+....++...+...+.+
T Consensus       127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~e--i~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e  204 (453)
T KOG2665|consen  127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSE--IMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE  204 (453)
T ss_pred             cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccch--hhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence            1111                   1111111  1111222221110  1000 000 111111445567888888887776


Q ss_pred             hCC--CCeEEeCceEEEEEecCCCCC--ccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCC
Q 044609          117 ELP--DDTIQFSSKIAAIDSQTLNGS--SAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLS  175 (232)
Q Consensus       117 ~~~--~~~i~~~~~v~~i~~~~~~g~--~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~  175 (232)
                      .++  +.+++.+-++..+.+..+ +.  ..++|....+++++++.||.|+|..|. +..+.+.+
T Consensus       205 dF~~~gg~i~~n~~l~g~~~n~~-~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~  267 (453)
T KOG2665|consen  205 DFDFMGGRIYTNFRLQGIAQNKE-ATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE  267 (453)
T ss_pred             HHHHhcccccccceeccchhccC-CCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence            665  788999999999987653 21  124555455779999999999999974 45555654

>PLN02612 phytoene desaturase

Probab=99.07  E-value=1.2e-08  Score=86.04  Aligned_cols=61  Identities=38%  Similarity=0.487  Sum_probs=47.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------------e----eeecccHHHHHHHcCChHH
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------------A----LTLSPNAWLALDALGVSHK   65 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------------~----~~~~~~~~~~l~~~g~~~~   65 (232)
                      ..+|+|||||++|+++|+.|+++|++|+++|+....+....            |    ....++..+.++++|+.+.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            47899999999999999999999999999999876532111            1    1124567888899988554

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.07  E-value=2.6e-10  Score=83.54  Aligned_cols=33  Identities=61%  Similarity=0.901  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ||+|||||++|+++|..|++.+++++++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.06  E-value=2.7e-09  Score=89.60  Aligned_cols=37  Identities=35%  Similarity=0.676  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~G   51 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG   51 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCc
Confidence            46999999999 89999999999999999999987653

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.06  E-value=5e-10  Score=66.78  Aligned_cols=34  Identities=50%  Similarity=0.724  Sum_probs=30.5

Q ss_pred             EECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc
Q 044609           10 IIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT   43 (232)
Q Consensus        10 IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~   43 (232)
                      |||||++|+++|+.|+++|++|+|+|+.+.++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~   34 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR   34 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence            8999999999999999999999999999887543

...

>PLN02507 glutathione reductase

Probab=99.05  E-value=8.5e-10  Score=91.58  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|||+||||||+|+.+|..+++.|.+|+|||+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999973

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.05  E-value=1.3e-09  Score=87.00  Aligned_cols=111  Identities=20%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--------ceeeeecccHHHHHHHcCChHH-HHhhccCceee
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--------GAALTLSPNAWLALDALGVSHK-LTSVYAPAKRV   76 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--------~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~   76 (232)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+.....        .+...+...+...+...|++.. +...+.    .
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l   78 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L   78 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence            49999999999999999999999999999987655321        1233344445666777787763 222211    1


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEE
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAI  132 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i  132 (232)
                      .+..  . .  ....+      ......++|..+.+.|.+.+   ++++++ ..+|+++
T Consensus        79 ~~~a--a-d--~~~vP------A~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l  125 (436)
T PRK05335         79 IMEA--A-D--AHRVP------AGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI  125 (436)
T ss_pred             heec--c-c--ccCCC------CccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence            1100  0 0  00001      11223678887888887765   356665 4455555

>PRK12839 hypothetical protein; Provisional

Probab=99.05  E-value=2.7e-09  Score=89.86  Aligned_cols=37  Identities=43%  Similarity=0.573  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||+|.+|+++|+.++++|.+|+||||....
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998765

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.05  E-value=7.6e-09  Score=87.44  Aligned_cols=37  Identities=35%  Similarity=0.603  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ++||+|||+|.+|+++|+.++++|.+|+||||.+..+
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            5899999999999999999999999999999997653

>PRK13748 putative mercuric reductase; Provisional

Probab=99.04  E-value=1.8e-09  Score=91.31  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|||+||||||+|+++|..|++.|.+|+|||++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999987

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.04  E-value=1.4e-09  Score=90.70  Aligned_cols=41  Identities=41%  Similarity=0.571  Sum_probs=37.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |...++||+|||||.|||.+|+.++..|++|+|+||....+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            45677999999999999999999999999999999998765

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.03  E-value=2.5e-09  Score=87.54  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEEccEEEecCCCchhhh
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIKAKVLIGCDGVHSMVA  169 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~a~~vV~A~G~~S~~r  169 (232)
                      ..+.+.|.+.++  +++++++++|+++..+++++.. +.|... ++.++.|+.||+|+|.++.-+
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v-~gv~~~~~~~~i~ak~VIlAtGG~~~n~  186 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAH-DGPLTTVGTHRITTQALVLAAGGLGANR  186 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeE-EEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence            356667766554  7899999999999875311333 445443 345799999999999887533

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.03  E-value=5.4e-10  Score=91.74  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ++|||+||||||+|+++|..|++.|++|+|+||.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            4699999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.02  E-value=1.8e-09  Score=90.06  Aligned_cols=36  Identities=33%  Similarity=0.572  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ++||+|||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            5899999999 99999999999999999999987643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.01  E-value=6.4e-09  Score=84.21  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ...+|+|||||++|+++|..|++.|.  +|+|+++.+.....               +..+...+.....          
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~---------------r~~l~~~~~~~~~----------   56 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE---------------RPPLSKSMLLEDS----------   56 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCC---------------CCCCCHHHHCCCC----------
Confidence            34589999999999999999999876  79999987644210               0001110000000          


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                       .        .      .  . .+..   .+.+.+  .+++++.++.|..+..+.      ..|.+.+|.++.+|.||+|
T Consensus        57 -~--------~------~--~-~~~~---~~~~~~--~~i~~~~g~~V~~id~~~------~~v~~~~g~~~~yd~LViA  107 (396)
T PRK09754         57 -P--------Q------L--Q-QVLP---ANWWQE--NNVHLHSGVTIKTLGRDT------RELVLTNGESWHWDQLFIA  107 (396)
T ss_pred             -c--------c------c--c-ccCC---HHHHHH--CCCEEEcCCEEEEEECCC------CEEEECCCCEEEcCEEEEc
Confidence             0        0      0  0 0001   122222  278999999999997653      3456678888999999999


Q ss_pred             CCCch
Q 044609          162 DGVHS  166 (232)
Q Consensus       162 ~G~~S  166 (232)
                      +|...
T Consensus       108 TGs~~  112 (396)
T PRK09754        108 TGAAA  112 (396)
T ss_pred             cCCCC
Confidence            99875

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.99  E-value=5.5e-09  Score=88.31  Aligned_cols=36  Identities=39%  Similarity=0.661  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++||+|||+|++|+++|+.++++|.+|+||||....
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            589999999999999999999999999999998764

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=3.2e-10  Score=91.36  Aligned_cols=147  Identities=21%  Similarity=0.250  Sum_probs=80.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeeccc----HHHHHHHcCChHHHHhhccCceeeEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPN----AWLALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      ..|||+|||||.||+-+|+..+|.|.+++++--+... +.-++.-++.--    ..+..+.||   -+.........+.+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALG---G~Mg~~~D~~~IQ~   79 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALG---GLMGKAADKAGIQF   79 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhcc---chHHHhhhhcCCch
Confidence            3599999999999999999999999999999876542 111110000000    011112221   11111111112222


Q ss_pred             EEcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           79 TNLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      ......+- ..          .......++..+.+.+.+.+   ++..++.+ .|+++..++  +..++.|.+.+|..+.
T Consensus        80 r~LN~sKGPAV----------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~--~~~v~GV~t~~G~~~~  146 (621)
T COG0445          80 RMLNSSKGPAV----------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEE--GQRVVGVVTADGPEFH  146 (621)
T ss_pred             hhccCCCcchh----------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcC--CCeEEEEEeCCCCeee
Confidence            21111100 00          00111234444444444433   36666655 677777654  4423889999999999


Q ss_pred             ccEEEecCCCch
Q 044609          155 AKVLIGCDGVHS  166 (232)
Q Consensus       155 a~~vV~A~G~~S  166 (232)
                      |+.||+++|-+-
T Consensus       147 a~aVVlTTGTFL  158 (621)
T COG0445         147 AKAVVLTTGTFL  158 (621)
T ss_pred             cCEEEEeecccc
Confidence            999999999763

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.99  E-value=1.9e-09  Score=89.08  Aligned_cols=35  Identities=40%  Similarity=0.648  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .|||+||||||+|+++|..|++.|.+|+|||+ +.+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~   35 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL   35 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence            38999999999999999999999999999998 444

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.99  E-value=9.3e-09  Score=84.91  Aligned_cols=35  Identities=43%  Similarity=0.620  Sum_probs=32.6

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |++|||+||||||+|+++|..|++.|.+|+|||++
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35699999999999999999999999999999993

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.98  E-value=1.7e-08  Score=89.38  Aligned_cols=36  Identities=36%  Similarity=0.577  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            458999999999999999999999999999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.98  E-value=2.6e-09  Score=86.74  Aligned_cols=38  Identities=47%  Similarity=0.714  Sum_probs=35.0

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +++||++|||+||+|..+|..+++.|.+|+++|+.+..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l   39 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL   39 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc
Confidence            36799999999999999999999999999999999744

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.95  E-value=1.6e-08  Score=62.57  Aligned_cols=80  Identities=28%  Similarity=0.400  Sum_probs=60.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+...                  +                        
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------~------------------------   38 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------F------------------------   38 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------S------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------c------------------------
Confidence            4899999999999999999999999999998765210                  0                        


Q ss_pred             eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC
Q 044609           87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS  150 (232)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g  150 (232)
                                  .    .-.+..+.+.|.+.  ++++++++.+.++..++   +. +.|+++||
T Consensus        39 ------------~----~~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~V~~~~g   80 (80)
T PF00070_consen   39 ------------D----PDAAKILEEYLRKR--GVEVHTNTKVKEIEKDG---DG-VEVTLEDG   80 (80)
T ss_dssp             ------------S----HHHHHHHHHHHHHT--TEEEEESEEEEEEEEET---TS-EEEEEETS
T ss_pred             ------------C----HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEEecC
Confidence                        0    01233445566654  89999999999999875   33 44887776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.95  E-value=3.4e-08  Score=83.58  Aligned_cols=34  Identities=29%  Similarity=0.572  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHH----hCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALR----RLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~----~~g~~v~viE~~~~~   40 (232)
                      ||+|||+|.||+++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998754

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.94  E-value=1.4e-09  Score=90.05  Aligned_cols=54  Identities=19%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                      ..+.+.|.+.++  |++|+++++|++|..++  +.. +.+...+|+.+.+|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g-~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEG--GKG-VGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--Ccc-eEEeccccceeccceeEecCch
Confidence            457777777664  79999999999999886  555 7888888877899999888766

>PTZ00058 glutathione reductase; Provisional

Probab=98.94  E-value=2.3e-09  Score=89.77  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ++|||+|||||++|.++|..+++.|.+|+||||+
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            5699999999999999999999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=98.93  E-value=9.8e-09  Score=85.07  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|||+|||+|++|+++|..|++.|.+|+++|+...+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~   51 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI   51 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            4599999999999999999999999999999997655

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.92  E-value=3.4e-08  Score=79.15  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=46.3

Q ss_pred             eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCCCc-hh
Q 044609          104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDGVH-SM  167 (232)
Q Consensus       104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G~~-S~  167 (232)
                      .+.-.++.+.|.+.++  |++++.+++|.++..++  +.. ..+.+.++  .+++||.+|+|+|.| |.
T Consensus       259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v-~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRV-TRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeE-EEEEecCCccceEECCEEEEccCCCcCH
Confidence            3455677777777664  78999999999998764  333 44665665  479999999999999 74

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.92  E-value=1.8e-08  Score=79.59  Aligned_cols=152  Identities=18%  Similarity=0.251  Sum_probs=73.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHH--HHHHHcCChHHHHhhccCceeeEEE--
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAW--LALDALGVSHKLTSVYAPAKRVFVT--   79 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~--~~l~~~g~~~~~~~~~~~~~~~~~~--   79 (232)
                      .+|+|+||.||++|++|..|...+ .+++.+||.+...-+. ++.+....+  ..|+.+      -.-..|.....+.  
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dl------vt~~~P~s~~sflnY   74 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDL------VTLRDPTSPFSFLNY   74 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSS------STTT-TTSTTSHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCcccccccccc------CcCcCCCCcccHHHH
Confidence            489999999999999999999875 8999999988764332 111111100  111111      0000000000000  


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCC-CccEEEEeC----CCcE
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNG-SSAAIINLG----DSTI  152 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g-~~~~~v~~~----~g~~  152 (232)
                      -...++..  .|-      ........|.++.+++...+.  ...+.++.+|++|....+.+ .. +.|.+.    ++++
T Consensus        75 L~~~~rl~--~f~------~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~-~~V~~~~~~g~~~~  145 (341)
T PF13434_consen   75 LHEHGRLY--EFY------NRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDL-FRVTTRDSDGDGET  145 (341)
T ss_dssp             HHHTT-HH--HHH------HH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEE-EEEEEEETTS-EEE
T ss_pred             HHHcCChh--hhh------hcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccE-EEEEEeecCCCeeE
Confidence            00011110  000      011224567777776666554  34599999999999875311 23 777763    3458


Q ss_pred             EEccEEEecCCCchhhhhhh
Q 044609          153 IKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       153 ~~a~~vV~A~G~~S~~r~~~  172 (232)
                      +.|+.||+|+|....+.+.+
T Consensus       146 ~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  146 YRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             EEESEEEE----EE---GGG
T ss_pred             EEeCeEEECcCCCCCCCcch
Confidence            99999999999776665555

>PLN02676 polyamine oxidase

Probab=98.92  E-value=1.3e-07  Score=78.49  Aligned_cols=56  Identities=18%  Similarity=0.279  Sum_probs=44.4

Q ss_pred             hHHHHHHHhhhCC--------CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          107 RQSLLEALADELP--------DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       107 ~~~l~~~l~~~~~--------~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      ...+.+.|.+.+.        +.+|+++++|++|...+   +. +.|++.+|+++.||.||.|.....
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~---~g-V~V~~~~G~~~~a~~VIvtvPl~v  286 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK---NG-VTVKTEDGSVYRAKYVIVSVSLGV  286 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC---Cc-EEEEECCCCEEEeCEEEEccChHH
Confidence            4567777777552        25799999999998874   44 889999999999999999997543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.91  E-value=6.3e-09  Score=91.94  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            479999999999999999999999999999998654

>PLN02546 glutathione reductase

Probab=98.91  E-value=3.7e-09  Score=88.52  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|||+|||+||+|..+|..+++.|.+|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.89  E-value=6.9e-08  Score=79.98  Aligned_cols=38  Identities=39%  Similarity=0.469  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRA   42 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~   42 (232)
                      ..+|+|||||++||++|+.|++.    |.+|+|+|+.+.++.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG   63 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG   63 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence            36899999999999999999995    689999999987643

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.87  E-value=2.4e-08  Score=82.14  Aligned_cols=110  Identities=18%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+.......               ++              ....  .+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~---------------~~--------------~~~~--~~   50 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC---------------GL--------------PYFV--GG   50 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC---------------CC--------------ceEe--cc
Confidence            6999999999999999999875  58999999875421100               00              0000  00


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-CCcEEE--ccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-DSTIIK--AKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g~~~~--a~~vV~A  161 (232)
                         .  +.      .... .+.+  ..+.+.+  .+++++.+++|+++..++   .. +.+... ++.++.  +|.||+|
T Consensus        51 ---~--~~------~~~~-~~~~--~~~~~~~--~gv~~~~~~~V~~id~~~---~~-v~~~~~~~~~~~~~~yd~lviA  110 (444)
T PRK09564         51 ---F--FD------DPNT-MIAR--TPEEFIK--SGIDVKTEHEVVKVDAKN---KT-ITVKNLKTGSIFNDTYDKLMIA  110 (444)
T ss_pred             ---c--cC------CHHH-hhcC--CHHHHHH--CCCeEEecCEEEEEECCC---CE-EEEEECCCCCEEEecCCEEEEC
Confidence               0  00      0000 0000  0122222  278899999999997763   33 555432 355566  9999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       111 tG~~~~  116 (444)
T PRK09564        111 TGARPI  116 (444)
T ss_pred             CCCCCC
Confidence            998754

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.87  E-value=9.1e-09  Score=82.27  Aligned_cols=152  Identities=18%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc-eeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG---IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA-KRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~   81 (232)
                      ++|+|||+|++|+++|..|.+.-   -+|.|+|+.+..   |+|+.+++.....  .+++...-.....+- ...+..|.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~--~lNv~a~~mS~~~pD~p~~F~~WL   76 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEH--LLNVPAARMSAFAPDIPQDFVRWL   76 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchh--hhccccccccccCCCCchHHHHHH
Confidence            58999999999999999999851   239999999876   5566665543211  111111000000000 00000010


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhh-------CCCC-eEEeCceEEEEEecCCCCCccEEEEeCCCcEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADE-------LPDD-TIQFSSKIAAIDSQTLNGSSAAIINLGDSTII  153 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~-~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~  153 (232)
                      .. ..  ..+....+.......+..|..|-++|.+.       .+.. -.....+.+++...++ +.. ..+...+|...
T Consensus        77 ~~-~~--~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n-~~~-~~~~~~~g~~~  151 (474)
T COG4529          77 QK-QL--QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTN-AGG-YLVTTADGPSE  151 (474)
T ss_pred             Hh-cc--cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccC-Cce-EEEecCCCCee
Confidence            00 00  00000000001111123344444443332       2222 2334567777776643 454 78888999999


Q ss_pred             EccEEEecCCCchh
Q 044609          154 KAKVLIGCDGVHSM  167 (232)
Q Consensus       154 ~a~~vV~A~G~~S~  167 (232)
                      .||.+|+|+|.--.
T Consensus       152 ~ad~~Vlatgh~~~  165 (474)
T COG4529         152 IADIIVLATGHSAP  165 (474)
T ss_pred             eeeEEEEeccCCCC
Confidence            99999999987543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.86  E-value=3.9e-08  Score=87.94  Aligned_cols=36  Identities=36%  Similarity=0.623  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            479999999999999999999999999999998765

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.8e-09  Score=80.83  Aligned_cols=111  Identities=24%  Similarity=0.427  Sum_probs=74.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEE-ecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVL-EKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~vi-E~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .|||+||||||+|.++|.+.+|+|++.-++ ||-.     |          +.++..++..                   
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----G----------QvldT~~IEN-------------------  256 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----G----------QVLDTMGIEN-------------------  256 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----C----------eeccccchhh-------------------
Confidence            499999999999999999999999988554 4321     1          1112121111                   


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                          .+..+           ...-.+|...|.++.+  .+++....+.+++++..+.+.. ..|++.+|-.++++.||++
T Consensus       257 ----fIsv~-----------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l-~ev~l~nGavLkaktvIls  320 (520)
T COG3634         257 ----FISVP-----------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGL-IEVELANGAVLKARTVILA  320 (520)
T ss_pred             ----eeccc-----------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCcc-EEEEecCCceeccceEEEe
Confidence                00001           1123456666666665  5666666777788774432444 8999999999999999999


Q ss_pred             CCCc
Q 044609          162 DGVH  165 (232)
Q Consensus       162 ~G~~  165 (232)
                      +|+.
T Consensus       321 tGAr  324 (520)
T COG3634         321 TGAR  324 (520)
T ss_pred             cCcc
Confidence            9974

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.86  E-value=2.2e-08  Score=80.19  Aligned_cols=149  Identities=26%  Similarity=0.331  Sum_probs=84.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC------cceeeeeccc-HH--HHHHHc----C------------
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA------TGAALTLSPN-AW--LALDAL----G------------   61 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~------~~~~~~~~~~-~~--~~l~~~----g------------   61 (232)
                      ||+|||+|+|||++|+.|++. ++|+|+-|.+....      .|.+..+.+. +.  ..-+-+    |            
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 99999999875521      2222223221 11  111111    0            


Q ss_pred             ----ChHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeee-----hHHHHHHHhhhC---CCCeEEeCceE
Q 044609           62 ----VSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVH-----RQSLLEALADEL---PDDTIQFSSKI  129 (232)
Q Consensus        62 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~~~---~~~~i~~~~~v  129 (232)
                          ..+.+...+.+++.-.     ++   .+.+....+  ......++     -..+++.|.+.+   ++++++.++.+
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~-----~g---~~~lt~Egg--HS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a  157 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDE-----DG---RLHLTREGG--HSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA  157 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCC-----CC---ceeeeeecc--cCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchh
Confidence                1122233333332111     01   011111111  11111111     245677777666   48999999999


Q ss_pred             EEEEecCCCCCccEEEEe--CCC--cEEEccEEEecCCCchhh
Q 044609          130 AAIDSQTLNGSSAAIINL--GDS--TIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       130 ~~i~~~~~~g~~~~~v~~--~~g--~~~~a~~vV~A~G~~S~~  168 (232)
                      .++..++  +.....+..  .++  .++.++.||+|+|..+.+
T Consensus       158 ~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         158 LDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             hhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence            9998875  323124443  333  478899999999998754

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.85  E-value=5.3e-08  Score=78.40  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            37999999999999999999999999999987653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.85  E-value=1.5e-07  Score=72.20  Aligned_cols=58  Identities=26%  Similarity=0.409  Sum_probs=44.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee---------e-----------ecccHHHHHHHcCChH
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL---------T-----------LSPNAWLALDALGVSH   64 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~---------~-----------~~~~~~~~l~~~g~~~   64 (232)
                      .+|+|||+|++||++|+.|+++ ++|+++|.+...+.+...+         .           .-|+..+.++.+|+..
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t   86 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT   86 (447)
T ss_pred             cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCC
Confidence            6899999999999999999976 8999999998775443222         1           2345677888888754

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.83  E-value=1.8e-08  Score=79.98  Aligned_cols=38  Identities=39%  Similarity=0.698  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ...||||||+|.+||++|+.|.|.|++|+|+|-++..+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G   43 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG   43 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence            35799999999999999999999999999999988764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.82  E-value=9.9e-08  Score=76.82  Aligned_cols=106  Identities=21%  Similarity=0.364  Sum_probs=77.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+...                .                         
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------~-------------------------  180 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------L-------------------------  180 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------h-------------------------
Confidence            57999999999999999999999999999986543100                0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                         +         +.    -....+.+.|.+.  +++++++++|.++..++   .. +.+.+.+|+++.||.||.|+|..
T Consensus       181 ---~---------~~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        181 ---M---------PP----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTD---SG-IRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             ---C---------CH----HHHHHHHHHHHhC--CCEEEECCeEEEEEccC---CE-EEEEEcCCcEEECCEEEECcCCC
Confidence               0         00    0123344445443  89999999999998653   33 66788899999999999999986


Q ss_pred             hh--hhhhhcC
Q 044609          166 SM--VAQWLGL  174 (232)
Q Consensus       166 S~--~r~~~~~  174 (232)
                      +.  +.+.+++
T Consensus       239 p~~~l~~~~gl  249 (377)
T PRK04965        239 PNTALARRAGL  249 (377)
T ss_pred             cchHHHHHCCC
Confidence            53  4444443

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.80  E-value=4.7e-07  Score=67.85  Aligned_cols=159  Identities=16%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCCCcC-cceeeeec-----ccHHHHHHH--cCChHHHHhh
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG------IKALVLEKSDGLRA-TGAALTLS-----PNAWLALDA--LGVSHKLTSV   69 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g------~~v~viE~~~~~~~-~~~~~~~~-----~~~~~~l~~--~g~~~~~~~~   69 (232)
                      +...|+|||||+.|.++|++|++++      ++|+|+|+..-.+. +|..-++.     +...+-|..  +.+.+.+.++
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde   88 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE   88 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence            3478999999999999999999987      89999998875532 22211111     100111111  1122222221


Q ss_pred             ccCc--------eeeEEEEc----CCCce-eEEecc--------CCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEe
Q 044609           70 YAPA--------KRVFVTNL----GTGAT-QELSYA--------GKSGRIGSGLRSVHRQSLLEALADELP---DDTIQF  125 (232)
Q Consensus        70 ~~~~--------~~~~~~~~----~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~  125 (232)
                      ..-.        +.+.....    ..+.. ..+++.        ...|. ......+++..|.+.+++.+.   ++++.+
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~-t~ttaqvhP~lFc~~i~sea~k~~~V~lv~  167 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGS-TNTTAQVHPYLFCHFILSEAEKRGGVKLVF  167 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccC-CCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence            1111        11221111    00000 111111        00111 334567999999999998774   588888


Q ss_pred             CceEEEEEecCCCCCccEEEEeC---C-CcEEEccEEEecCCCchh
Q 044609          126 SSKIAAIDSQTLNGSSAAIINLG---D-STIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       126 ~~~v~~i~~~~~~g~~~~~v~~~---~-g~~~~a~~vV~A~G~~S~  167 (232)
                      + +|.++..+.  ++. ..+..+   + ......+.+|++.|.|+.
T Consensus       168 G-kv~ev~dEk--~r~-n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  168 G-KVKEVSDEK--HRI-NSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             e-eeEEeeccc--ccc-cccchhhhcCceEEeeeeEEEEecCCCch
Confidence            8 677876332  332 333332   2 235677899999999973

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.79  E-value=3.8e-08  Score=86.27  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      +.+|+|||+|++|+.+|..|.++    +++|+||++.+.+....               ..+...+..  ..        
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r---------------~~L~~~~~~--~~--------   57 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDR---------------VHLSSYFSH--HT--------   57 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccC---------------CcchHhHcC--CC--------
Confidence            34899999999999999999764    57999999987653211               001000000  00        


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                                .         .......   .+++.+  .+++++.+++|+++..+.      ..|.+.+|.++.+|.||+
T Consensus        58 ----------~---------~~l~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~------~~V~~~~G~~i~yD~LVI  107 (847)
T PRK14989         58 ----------A---------EELSLVR---EGFYEK--HGIKVLVGERAITINRQE------KVIHSSAGRTVFYDKLIM  107 (847)
T ss_pred             ----------H---------HHccCCC---HHHHHh--CCCEEEcCCEEEEEeCCC------cEEEECCCcEEECCEEEE
Confidence                      0         0000111   122222  278999999999987652      446678888899999999


Q ss_pred             cCCCchhh
Q 044609          161 CDGVHSMV  168 (232)
Q Consensus       161 A~G~~S~~  168 (232)
                      |+|....+
T Consensus       108 ATGs~p~~  115 (847)
T PRK14989        108 ATGSYPWI  115 (847)
T ss_pred             CCCCCcCC
Confidence            99987643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.79  E-value=3.8e-08  Score=86.51  Aligned_cols=36  Identities=42%  Similarity=0.593  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+||||||||+++|+.|+++|++|+|+|+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            368999999999999999999999999999988765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.78  E-value=1.7e-08  Score=83.54  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|||+|||+||+|+.+|..+++.|.+|++||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.78  E-value=4.1e-08  Score=81.26  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~   37 (232)
                      .+|||+||||||+|..+|..+++. |.+|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            569999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.78  E-value=9.4e-08  Score=75.81  Aligned_cols=56  Identities=14%  Similarity=0.279  Sum_probs=45.8

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      ..+++.+.+.+.  |++++++++|.+++..+  +.. ..|.+++|.++.+|.||+|-|+.+
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~-~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEV-LGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--Cce-EEEEccCCcEEecCEEEEccCcch
Confidence            355566666554  79999999999999876  344 778899999999999999999976

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.78  E-value=1.3e-07  Score=77.64  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +|+|||||++|+.+|..|++.  +.+|+|||+.+...-..++               +... ...          . ...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~---------------lp~~-~~~----------~-~~~   55 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA---------------LPYY-IGE----------V-VED   55 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCC---------------cchh-hcC----------c-cCC
Confidence            799999999999999999886  6799999998754211100               0000 000          0 000


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-Cc--EEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-ST--IIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~--~~~a~~vV~A  161 (232)
                                    ......+.+    +.+.+. .+++++.+++|+++..++   .. +.+...+ ++  ++.+|.||+|
T Consensus        56 --------------~~~~~~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~---~~-v~~~~~~~~~~~~~~yd~lviA  112 (438)
T PRK13512         56 --------------RKYALAYTP----EKFYDR-KQITVKTYHEVIAINDER---QT-VTVLNRKTNEQFEESYDKLILS  112 (438)
T ss_pred             --------------HHHcccCCH----HHHHHh-CCCEEEeCCEEEEEECCC---CE-EEEEECCCCcEEeeecCEEEEC
Confidence                          000001111    122222 278999999999997763   43 5555433 23  4689999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       113 tGs~~~  118 (438)
T PRK13512        113 PGASAN  118 (438)
T ss_pred             CCCCCC
Confidence            998753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.77  E-value=4.4e-08  Score=80.85  Aligned_cols=32  Identities=28%  Similarity=0.571  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+||||||+|+++|..+++.|.+|+||||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            69999999999999999999999999999875

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.77  E-value=2.9e-07  Score=74.27  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=54.0

Q ss_pred             CceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          100 SGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      +....++...+.+.|.+.+. +++++++++|.+++.++   .. +.|.+.+|.++.||.||+|+|.|+.
T Consensus       127 ~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       127 PQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDG---EG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             CCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC---Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            34457888999999998876 78999999999998753   44 7888888888999999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.77  E-value=3.2e-08  Score=75.63  Aligned_cols=41  Identities=32%  Similarity=0.604  Sum_probs=36.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |.+..+||||||+|.+||.+|..|+..|.+|+|+|+.....
T Consensus         1 ~d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn   41 (552)
T COG3573           1 SDGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN   41 (552)
T ss_pred             CCcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence            45567999999999999999999999999999999987653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.77  E-value=8.9e-09  Score=84.49  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++|||+||||||+|+++|..|++.|++|+|+||.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            479999999999999999999999999999999864

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.76  E-value=1.3e-08  Score=83.90  Aligned_cols=39  Identities=41%  Similarity=0.675  Sum_probs=35.7

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +++++|||||||+||+++|.+|.+.|++|+|+|.++..+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            345799999999999999999999999999999988764

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.5e-08  Score=80.53  Aligned_cols=151  Identities=21%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeeccc-HHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPN-AWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      .+|||+|||||-||+-+|.+.+|.|.+.+++-.+-.. +.-++.-++..- --..+++.+.++.+....+...++.+...
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L  106 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL  106 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence            4689999999999999999999999999999876432 111110000000 00111222112222222221111111111


Q ss_pred             CCCceeEEeccCCCCC-CCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecC-CCCCc-cEEEEeCCCcEEEc
Q 044609           82 GTGATQELSYAGKSGR-IGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQT-LNGSS-AAIINLGDSTIIKA  155 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~-~~g~~-~~~v~~~~g~~~~a  155 (232)
                      +          ...|. .......++|..+-..+.+.+   ++..++.+ .|.++...+ +.+.. ...|.+.||..+.|
T Consensus       107 N----------rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a  175 (679)
T KOG2311|consen  107 N----------RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYA  175 (679)
T ss_pred             h----------ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEecc
Confidence            0          01110 011112455555555555544   35677766 555655432 21222 36678899999999


Q ss_pred             cEEEecCCCc
Q 044609          156 KVLIGCDGVH  165 (232)
Q Consensus       156 ~~vV~A~G~~  165 (232)
                      +-||+.+|-+
T Consensus       176 ~~VilTTGTF  185 (679)
T KOG2311|consen  176 ESVILTTGTF  185 (679)
T ss_pred             ceEEEeeccc
Confidence            9999999976

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.74  E-value=7.2e-08  Score=77.63  Aligned_cols=104  Identities=16%  Similarity=0.281  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+|+|||||+||+++|..|.+.  ..+|+||++++........               +...+               ..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~---------------~~   52 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF---------------SQ   52 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH---------------hC
Confidence            4899999999999999999875  4689999987643111000               00000               00


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHH----HHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSL----LEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                                          ......+    .+.+.+.. +++++.+++|+++..+.   .   .+.+ ++.++.+|.||
T Consensus        53 --------------------~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~---~---~v~~-~~~~~~yd~LV  104 (377)
T PRK04965         53 --------------------GQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEA---Q---VVKS-QGNQWQYDKLV  104 (377)
T ss_pred             --------------------CCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCC---C---EEEE-CCeEEeCCEEE
Confidence                                0000111    11222222 78999999999997653   2   2333 56679999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      +|+|....
T Consensus       105 lATG~~~~  112 (377)
T PRK04965        105 LATGASAF  112 (377)
T ss_pred             ECCCCCCC
Confidence            99998753

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.74  E-value=1.5e-07  Score=71.61  Aligned_cols=35  Identities=34%  Similarity=0.577  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .|+|||+|.|||+++..+-..|-.|+++|+....+
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G   45 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG   45 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence            69999999999999999998876799999998764

>PRK07208 hypothetical protein; Provisional

Probab=98.74  E-value=1.8e-08  Score=83.67  Aligned_cols=39  Identities=41%  Similarity=0.494  Sum_probs=35.7

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |+..||+|||||++||++|+.|+++|++|+|+|+.+..+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            356799999999999999999999999999999988764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.73  E-value=2.7e-07  Score=78.67  Aligned_cols=33  Identities=36%  Similarity=0.598  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|||+|||+|++|..+|..+++.|.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            589999999999999999999999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.72  E-value=2.3e-07  Score=76.78  Aligned_cols=100  Identities=23%  Similarity=0.362  Sum_probs=74.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                  +                       
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------------  214 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------L-----------------------  214 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------C-----------------------
Confidence            58999999999999999999999999999987533100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  +++++.+++|+++..++   .. +.+.+.+|+++.+|.||.|+|..
T Consensus       215 -------------d~----~~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        215 -------------DD----EISDALSYHLRDS--GVTIRHNEEVEKVEGGD---DG-VIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEECCEEEEEEEeC---Ce-EEEEECCCCEEEeCEEEEeecCC
Confidence                         00    0122344445433  89999999999998653   33 66677788889999999999998


Q ss_pred             hhhh
Q 044609          166 SMVA  169 (232)
Q Consensus       166 S~~r  169 (232)
                      ++..
T Consensus       272 p~~~  275 (461)
T PRK05249        272 GNTD  275 (461)
T ss_pred             cccc
Confidence            7643

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.2e-07  Score=67.06  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=74.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +...|+|||+||++-++|++++|..+|.+++|-.-.-+..                                      ..
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~--------------------------------------pG   48 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA--------------------------------------PG   48 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcC--------------------------------------CC
Confidence            3458999999999999999999999999999953221111                                      01


Q ss_pred             Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      +.+ ...+....++  .+.  -+.-.+|.+.++++..  |.+++.. .|.++...   +.. +.+.+ |.+.+.||.||.
T Consensus        49 GQLtTTT~veNfPG--FPd--gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~s---skp-F~l~t-d~~~v~~~avI~  118 (322)
T KOG0404|consen   49 GQLTTTTDVENFPG--FPD--GITGPELMDKMRKQSERFGTEIITE-TVSKVDLS---SKP-FKLWT-DARPVTADAVIL  118 (322)
T ss_pred             ceeeeeeccccCCC--CCc--ccccHHHHHHHHHHHHhhcceeeee-ehhhcccc---CCC-eEEEe-cCCceeeeeEEE
Confidence            111 1111122222  111  3456678888887764  5566654 56677665   344 65554 555699999999


Q ss_pred             cCCCch
Q 044609          161 CDGVHS  166 (232)
Q Consensus       161 A~G~~S  166 (232)
                      |+|+..
T Consensus       119 atGAsA  124 (322)
T KOG0404|consen  119 ATGASA  124 (322)
T ss_pred             ecccce
Confidence            999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.72  E-value=1.6e-07  Score=77.67  Aligned_cols=32  Identities=34%  Similarity=0.617  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ||+|||+|++|+.+|..+++.|.+|+++||..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            89999999999999999999999999999875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.72  E-value=2.1e-07  Score=75.38  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...                .                     .   
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~---------------------~---  184 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------------N---------------------A---  184 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------------h---------------------c---
Confidence            57999999999999999999999999999987643100                0                     0   


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ++    .....+.+.+.+.  +++++++++|+++..+   +.  +.+.+.+|+++.||+||.|.|..
T Consensus       185 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~---~~--~~v~l~~g~~i~aD~Vv~a~G~~  240 (396)
T PRK09754        185 -------------PP----PVQRYLLQRHQQA--GVRILLNNAIEHVVDG---EK--VELTLQSGETLQADVVIYGIGIS  240 (396)
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEcC---CE--EEEEECCCCEEECCEEEECCCCC
Confidence                         00    0112233444432  8999999999998752   23  66778899999999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      .+
T Consensus       241 pn  242 (396)
T PRK09754        241 AN  242 (396)
T ss_pred             hh
Confidence            64

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.72  E-value=5.4e-08  Score=78.00  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=64.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +|+|||||++|+.+|..|.++   +.+|+|||+.+......       .    +      ..+.               .
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-------~----~------~~~~---------------~   48 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-------M----L------PGMI---------------A   48 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-------h----h------hHHH---------------h
Confidence            489999999999999999754   68999999876532111       0    0      0000               0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                      +   ..         ........   +.+.+.+  .+++++.+ +|+++..++      -.|.+.+|+++.+|+||+|+|
T Consensus        49 g---~~---------~~~~~~~~---~~~~~~~--~gv~~~~~-~v~~id~~~------~~V~~~~g~~~~yD~LviAtG  104 (364)
T TIGR03169        49 G---HY---------SLDEIRID---LRRLARQ--AGARFVIA-EATGIDPDR------RKVLLANRPPLSYDVLSLDVG  104 (364)
T ss_pred             e---eC---------CHHHhccc---HHHHHHh--cCCEEEEE-EEEEEeccc------CEEEECCCCcccccEEEEccC
Confidence            0   00         00000011   1122222  27887765 788887653      346678888899999999999


Q ss_pred             Cchh
Q 044609          164 VHSM  167 (232)
Q Consensus       164 ~~S~  167 (232)
                      ....
T Consensus       105 ~~~~  108 (364)
T TIGR03169       105 STTP  108 (364)
T ss_pred             CCCC
Confidence            7653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.71  E-value=1.1e-07  Score=77.69  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +.+|+|||||.+|+.+|..|.+.+.+|+|||+.+..
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            469999999999999999998778999999987643

>PRK06116 glutathione reductase; Validated

Probab=98.71  E-value=3e-07  Score=75.82  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                  .                       
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  206 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------F-----------------------  206 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------c-----------------------
Confidence            58999999999999999999999999999986533100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  +++++++++|.+++.++  +.. +.+.+.+|+++.||.||.|+|..
T Consensus       207 -------------~~----~~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~--~g~-~~v~~~~g~~i~~D~Vv~a~G~~  264 (450)
T PRK06116        207 -------------DP----DIRETLVEEMEKK--GIRLHTNAVPKAVEKNA--DGS-LTLTLEDGETLTVDCLIWAIGRE  264 (450)
T ss_pred             -------------CH----HHHHHHHHHHHHC--CcEEECCCEEEEEEEcC--Cce-EEEEEcCCcEEEeCEEEEeeCCC
Confidence                         00    0122334444433  89999999999998754  232 55777888899999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       265 p~~  267 (450)
T PRK06116        265 PNT  267 (450)
T ss_pred             cCC
Confidence            654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.70  E-value=3e-07  Score=76.03  Aligned_cols=100  Identities=20%  Similarity=0.298  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                  .                       
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------------  209 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------E-----------------------  209 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------C-----------------------
Confidence            58999999999999999999999999999987532000                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G  163 (232)
                                   ..    -....+.+.|.+.  +++++.+++|.+++.++   .. +.+.+.+|  .++.+|.||.|+|
T Consensus       210 -------------~~----~~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~i~~D~vi~a~G  266 (461)
T TIGR01350       210 -------------DA----EVSKVVAKALKKK--GVKILTNTKVTAVEKND---DQ-VVYENKGGETETLTGEKVLVAVG  266 (461)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEeCCcEEEEEeCEEEEecC
Confidence                         00    0012234444443  79999999999997653   33 55666666  4799999999999


Q ss_pred             Cchhhh
Q 044609          164 VHSMVA  169 (232)
Q Consensus       164 ~~S~~r  169 (232)
                      ..+...
T Consensus       267 ~~p~~~  272 (461)
T TIGR01350       267 RKPNTE  272 (461)
T ss_pred             CcccCC
Confidence            987654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.68  E-value=1.4e-07  Score=82.45  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            8 VVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      |+|||+|++|+.+|..|.+.   +++|+|||+.+.+.....               .+.. +.               .+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l---------------~g   49 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VL---------------QG   49 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HH---------------CC
Confidence            68999999999999998774   579999998876521100               0000 00               00


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                      ..   ...         ...+..   .+++.+  .+++++.+++|+++..+.      ..|.+.+|.++.+|.||+|+|.
T Consensus        50 ~~---~~~---------~l~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~------k~V~~~~g~~~~yD~LVlATGs  106 (785)
T TIGR02374        50 EA---DLD---------DITLNS---KDWYEK--HGITLYTGETVIQIDTDQ------KQVITDAGRTLSYDKLILATGS  106 (785)
T ss_pred             CC---CHH---------HccCCC---HHHHHH--CCCEEEcCCeEEEEECCC------CEEEECCCcEeeCCEEEECCCC
Confidence            00   000         000111   122332  279999999999997653      3466788888999999999998


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      ...
T Consensus       107 ~p~  109 (785)
T TIGR02374       107 YPF  109 (785)
T ss_pred             CcC
Confidence            754

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.68  E-value=8e-07  Score=69.19  Aligned_cols=38  Identities=37%  Similarity=0.584  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|||+|||+||.|..+|+..++.|++.+++|++...+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG   75 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG   75 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence            46999999999999999999999999999999987653

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.67  E-value=2.2e-07  Score=74.18  Aligned_cols=37  Identities=54%  Similarity=0.772  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~   41 (232)
                      ..+|+|||||+||+++|..|-..| .+++|+|-.+..+
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            368999999999999999999765 5899999887764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.66  E-value=3.7e-07  Score=75.55  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                +                         
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------~-------------------------  211 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------E-------------------------  211 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------------C-------------------------
Confidence            57999999999999999999999999999987543100                0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A~  162 (232)
                                   ..    -....+.+.|.+.  +++++.+++|++++.++   .. +.+.+.++   +++.+|.||.|.
T Consensus       212 -------------~~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~gg~~~~i~~D~vi~a~  268 (462)
T PRK06416        212 -------------DK----EISKLAERALKKR--GIKIKTGAKAKKVEQTD---DG-VTVTLEDGGKEETLEADYVLVAV  268 (462)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEEeCCeeEEEEeCEEEEee
Confidence                         00    0012334444433  89999999999998753   33 55666555   579999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |.....
T Consensus       269 G~~p~~  274 (462)
T PRK06416        269 GRRPNT  274 (462)
T ss_pred             CCccCC
Confidence            988654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.65  E-value=5e-08  Score=76.33  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCcCcceeeeecccHHH--HHHHcCChHHHHhhccCceeeE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLRATGAALTLSPNAWL--ALDALGVSHKLTSVYAPAKRVF   77 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~~~~~~~~~~~~~~~--~l~~~g~~~~~~~~~~~~~~~~   77 (232)
                      |.+..+|++.||-||+-|++|+.|...+ .+++.+||.+.+.-+... .+....++  .++.|      -.-..|-....
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDL------VTl~~PTs~yS   73 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDL------VTLVDPTSPYS   73 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-ccCCccccccchhhh------ccccCCCCchH
Confidence            5667799999999999999999999874 789999999988655422 11111111  11111      11111110000


Q ss_pred             EEEcCCCceeEEeccCCCC----CCCCceeeeehHHHHHHHhhhCCC-CeEEeCceEEEEEecCCCCCc-cEEEEeCCCc
Q 044609           78 VTNLGTGATQELSYAGKSG----RIGSGLRSVHRQSLLEALADELPD-DTIQFSSKIAAIDSQTLNGSS-AAIINLGDST  151 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~  151 (232)
                      +          ++|-..++    .+......+.|.++.+++.-.+.. -.++++.+|++|..-+. +.. ...+.+.++.
T Consensus        74 F----------LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~-d~~~~~~~~t~~~~  142 (436)
T COG3486          74 F----------LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDG-DAVVRLFVVTANGT  142 (436)
T ss_pred             H----------HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCC-cceeEEEEEcCCCc
Confidence            0          01111111    012334467788887777666542 47889999998844331 122 1336677888


Q ss_pred             EEEccEEEecCCCchhhhhhh
Q 044609          152 IIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       152 ~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      +++|+-||+..|....+...+
T Consensus       143 ~y~ar~lVlg~G~~P~IP~~f  163 (436)
T COG3486         143 VYRARNLVLGVGTQPYIPPCF  163 (436)
T ss_pred             EEEeeeEEEccCCCcCCChHH
Confidence            999999999999877654333

>PRK07846 mycothione reductase; Reviewed

Probab=98.65  E-value=1.7e-07  Score=77.12  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|||+||||||+|.++|..  ..|.+|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988865  4699999999853

>PRK07846 mycothione reductase; Reviewed

Probab=98.64  E-value=6.1e-07  Score=73.91  Aligned_cols=98  Identities=21%  Similarity=0.374  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                  .                       
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~-----------------------  205 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------L-----------------------  205 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------c-----------------------
Confidence            68999999999999999999999999999986532100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ...   + +..+.+ +.+  .+++++.++++++++.++   .. +.+.+.+|+++.+|.|+.|+|..
T Consensus       206 -------------d~~---~-~~~l~~-l~~--~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~  261 (451)
T PRK07846        206 -------------DDD---I-SERFTE-LAS--KRWDVRLGRNVVGVSQDG---SG-VTLRLDDGSTVEADVLLVATGRV  261 (451)
T ss_pred             -------------CHH---H-HHHHHH-HHh--cCeEEEeCCEEEEEEEcC---CE-EEEEECCCcEeecCEEEEEECCc
Confidence                         000   0 111222 222  268899999999997653   33 66777888899999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       262 pn~  264 (451)
T PRK07846        262 PNG  264 (451)
T ss_pred             cCc
Confidence            754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.63  E-value=5.1e-08  Score=81.22  Aligned_cols=36  Identities=42%  Similarity=0.619  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .||+|||||++||++|..|+++|++|+|+|++..++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999998764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07233 hypothetical protein; Provisional

Probab=98.62  E-value=5.8e-08  Score=79.59  Aligned_cols=58  Identities=34%  Similarity=0.507  Sum_probs=44.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee---------------eecccHHHHHHHcCChH
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL---------------TLSPNAWLALDALGVSH   64 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~---------------~~~~~~~~~l~~~g~~~   64 (232)
                      +|+|||||++||++|+.|+++|++|+|+|+.+.++....+.               .-.++..+.++++|+.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~   73 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLED   73 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCC
Confidence            59999999999999999999999999999998774322111               11234567778887643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.62  E-value=7e-07  Score=73.56  Aligned_cols=100  Identities=21%  Similarity=0.279  Sum_probs=74.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+-..                  +                       
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------~-----------------------  205 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------F-----------------------  205 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------c-----------------------
Confidence            58999999999999999999999999999987543100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~  164 (232)
                                   ..    -.+..+.+.|.+.  +++++.+++|+++..+.  +.. +.+.+.++ +++.+|.||.|.|.
T Consensus       206 -------------d~----~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~i~~D~vi~a~G~  263 (450)
T TIGR01421       206 -------------DS----MISETITEEYEKE--GINVHKLSKPVKVEKTV--EGK-LVIHFEDGKSIDDVDELIWAIGR  263 (450)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeC--Cce-EEEEECCCcEEEEcCEEEEeeCC
Confidence                         00    0123344555443  89999999999998653  222 55667777 57999999999999


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      ..+.
T Consensus       264 ~pn~  267 (450)
T TIGR01421       264 KPNT  267 (450)
T ss_pred             CcCc
Confidence            8764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.62  E-value=7.1e-07  Score=73.36  Aligned_cols=98  Identities=16%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+.+...                                       .  
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------~--  196 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------------------------------------E--  196 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------------------------------------C--
Confidence            58999999999999999999999999999987643100                                       0  


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -.+..+.+.|.+.  +++++.+++|+++..++   .. +.+. .+++++.+|.||.|+|..
T Consensus       197 -------------~~----~~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~---~~-v~v~-~~g~~i~~D~viva~G~~  252 (438)
T PRK07251        197 -------------EP----SVAALAKQYMEED--GITFLLNAHTTEVKNDG---DQ-VLVV-TEDETYRFDALLYATGRK  252 (438)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEecC---CE-EEEE-ECCeEEEcCEEEEeeCCC
Confidence                         00    0012233444432  89999999999997643   33 4444 356689999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       253 p~~  255 (438)
T PRK07251        253 PNT  255 (438)
T ss_pred             CCc
Confidence            653

>PLN02576 protoporphyrinogen oxidase

Probab=98.60  E-value=8.3e-08  Score=80.09  Aligned_cols=38  Identities=42%  Similarity=0.677  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~   41 (232)
                      .++||+|||||++||++|+.|+++ |++|+|+|+.+.++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            357999999999999999999999 99999999998774

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.58  E-value=1.3e-06  Score=72.24  Aligned_cols=100  Identities=21%  Similarity=0.297  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------  208 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------  208 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence            58999999999999999999999999999987533100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~  164 (232)
                         .         ...    -+..+.+.|.+.  +++++++++|++++.++   .. +.+...++ .++.+|.||.|+|.
T Consensus       209 ---~---------d~e----~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~---~~-v~~~~~g~~~~i~~D~vivA~G~  266 (458)
T PRK06912        209 ---E---------DED----IAHILREKLEND--GVKIFTGAALKGLNSYK---KQ-ALFEYEGSIQEVNAEFVLVSVGR  266 (458)
T ss_pred             ---c---------cHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEcC---CE-EEEEECCceEEEEeCEEEEecCC
Confidence               0         000    122344455443  89999999999997653   33 44443322 36899999999998


Q ss_pred             chhhh
Q 044609          165 HSMVA  169 (232)
Q Consensus       165 ~S~~r  169 (232)
                      .+++.
T Consensus       267 ~p~~~  271 (458)
T PRK06912        267 KPRVQ  271 (458)
T ss_pred             ccCCC
Confidence            87653

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=6.9e-08  Score=79.89  Aligned_cols=34  Identities=41%  Similarity=0.673  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|||+||||||+|+++|..|++.|.+|+|||++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999999986

>TIGR03452 mycothione_red mycothione reductase

Probab=98.58  E-value=1.9e-07  Score=76.90  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|||+|||+||+|..+|.  +..|.+|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            599999999999998864  44799999999853

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02507 glutathione reductase

Probab=98.58  E-value=1.1e-06  Score=73.35  Aligned_cols=99  Identities=11%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+-..                  .                       
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~-----------------------  242 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------F-----------------------  242 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------c-----------------------
Confidence            58999999999999999999999999999986532100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -.+..+.+.|.+.  +++++.+++|++++.++   .. +.+.+.+|+++.+|.|+.|.|..
T Consensus       243 -------------d~----~~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        243 -------------DD----EMRAVVARNLEGR--GINLHPRTNLTQLTKTE---GG-IKVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             -------------CH----HHHHHHHHHHHhC--CCEEEeCCEEEEEEEeC---Ce-EEEEECCCcEEEcCEEEEeecCC
Confidence                         00    0123344455443  89999999999998653   33 66777788889999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       300 pn~  302 (499)
T PLN02507        300 PNT  302 (499)
T ss_pred             CCC
Confidence            654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.57  E-value=1.2e-06  Score=72.76  Aligned_cols=101  Identities=19%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------  218 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------  218 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence            58999999999999999999999999999987643100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc--EEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST--IIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~--~~~a~~vV~A~G  163 (232)
                         .         ..    -....+.+.|.+.  +++++.+++|+++....+ +.. ..+.+.+|+  ++.+|.||.|.|
T Consensus       219 ---~---------~~----~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~-~~~-~~~~~~~g~~~~i~~D~vi~a~G  278 (472)
T PRK05976        219 ---E---------DA----ELSKEVARLLKKL--GVRVVTGAKVLGLTLKKD-GGV-LIVAEHNGEEKTLEADKVLVSVG  278 (472)
T ss_pred             ---C---------CH----HHHHHHHHHHHhc--CCEEEeCcEEEEEEEecC-CCE-EEEEEeCCceEEEEeCEEEEeeC
Confidence               0         00    0112334444433  899999999999975211 232 344455663  699999999999


Q ss_pred             Cchhh
Q 044609          164 VHSMV  168 (232)
Q Consensus       164 ~~S~~  168 (232)
                      .....
T Consensus       279 ~~p~~  283 (472)
T PRK05976        279 RRPNT  283 (472)
T ss_pred             CccCC
Confidence            97654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.57  E-value=1.1e-06  Score=72.33  Aligned_cols=99  Identities=16%  Similarity=0.247  Sum_probs=72.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  204 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------  204 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence            57999999999999999999999999999986532000                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                         +         ..    -.+..+.+.|.+.  +++++.+++|.++...+   .. ..+.+.+++++.+|.||.|.|..
T Consensus       205 ---~---------d~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       205 ---F---------DD----DMRALLARNMEGR--GIRIHPQTSLTSITKTD---DG-LKVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             ---c---------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEEcC---Ce-EEEEEcCCcEeecCEEEEeeCCC
Confidence               0         00    0122334444433  89999999999997653   23 55667788889999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       263 pn~  265 (446)
T TIGR01424       263 PNT  265 (446)
T ss_pred             cCC
Confidence            654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.57  E-value=1.2e-06  Score=72.62  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------------------------------------  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-----------------------------------------  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence            479999999999999999999999999999865431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .    .-....+.+.|.+.  +++++.++++.+++.++   .. +.+.+.+|+++.+|.|+.|.|..
T Consensus       217 -------------d----~~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        217 -------------D----ADAAEVLEEVFARR--GMTVLKRSRAESVERTG---DG-VVVTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             -------------C----HHHHHHHHHHHHHC--CcEEEcCCEEEEEEEeC---CE-EEEEECCCcEEEecEEEEeecCC
Confidence                         0    00122334444433  89999999999997653   33 66777788899999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      .+.
T Consensus       274 pn~  276 (466)
T PRK07845        274 PNT  276 (466)
T ss_pred             cCC
Confidence            654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.56  E-value=1.1e-06  Score=72.77  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=70.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-...                                         
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-----------------------------------------  211 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-----------------------------------------  211 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-----------------------------------------
Confidence            589999999999999999999999999999765331000                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe--CCC--cEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS--TIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g--~~~~a~~vV~A  161 (232)
                                   .    .-....+.+.|.+.  +++++.+++|+++..++   .. +.+.+  .+|  +++.+|.||.|
T Consensus       212 -------------d----~~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vi~a  268 (466)
T PRK07818        212 -------------D----AEVSKEIAKQYKKL--GVKILTGTKVESIDDNG---SK-VTVTVSKKDGKAQELEADKVLQA  268 (466)
T ss_pred             -------------C----HHHHHHHHHHHHHC--CCEEEECCEEEEEEEeC---Ce-EEEEEEecCCCeEEEEeCEEEEC
Confidence                         0    00122334445443  89999999999997653   33 44444  356  37999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      .|...+.
T Consensus       269 ~G~~pn~  275 (466)
T PRK07818        269 IGFAPRV  275 (466)
T ss_pred             cCcccCC
Confidence            9988764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.56  E-value=1e-07  Score=72.56  Aligned_cols=36  Identities=33%  Similarity=0.663  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|||+|||||++|++||+.|+++|.++.||.++-.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            469999999999999999999999999999998754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.56  E-value=1.6e-07  Score=77.77  Aligned_cols=60  Identities=28%  Similarity=0.410  Sum_probs=45.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------e----------eeecccHHHHHHHcCChHHH
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------A----------LTLSPNAWLALDALGVSHKL   66 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------~----------~~~~~~~~~~l~~~g~~~~~   66 (232)
                      +|+|||||++|+++|+.|+++|++|+|+|+.+.++...+      +          ....++..+.++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            589999999999999999999999999999887642111      1          01234567788888886554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=1e-07  Score=77.09  Aligned_cols=36  Identities=42%  Similarity=0.567  Sum_probs=33.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      +|+|+|||+|||++|+.|+++|++|+|+|+++.++.
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            699999999999999999999999999999998753

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.56  E-value=1e-07  Score=75.90  Aligned_cols=35  Identities=37%  Similarity=0.633  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +||+|||||++|+++|..|++.|.+|+|+|+++..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            59999999999999999999999999999997654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.56  E-value=1.5e-06  Score=70.85  Aligned_cols=100  Identities=23%  Similarity=0.367  Sum_probs=75.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      ..++|||||+.|+-+|..+++.|.+|+|+|+.+.+-+.                  ..+                     
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------~D~---------------------  214 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------EDP---------------------  214 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------CCH---------------------
Confidence            57999999999999999999999999999998754111                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc--EEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST--IIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~--~~~a~~vV~A~G  163 (232)
                                         --...+.+.|.+  .+++++.+++++.++..+   .. +.+.+.+|.  ++++|.|+.|.|
T Consensus       215 -------------------ei~~~~~~~l~~--~gv~i~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~ad~vLvAiG  269 (454)
T COG1249         215 -------------------EISKELTKQLEK--GGVKILLNTKVTAVEKKD---DG-VLVTLEDGEGGTIEADAVLVAIG  269 (454)
T ss_pred             -------------------HHHHHHHHHHHh--CCeEEEccceEEEEEecC---Ce-EEEEEecCCCCEEEeeEEEEccC
Confidence                               012334445554  478999999999998764   33 667777765  789999999999


Q ss_pred             Cchhhh
Q 044609          164 VHSMVA  169 (232)
Q Consensus       164 ~~S~~r  169 (232)
                      +..++-
T Consensus       270 R~Pn~~  275 (454)
T COG1249         270 RKPNTD  275 (454)
T ss_pred             CccCCC
Confidence            987654

>PLN02268 probable polyamine oxidase

Probab=98.55  E-value=1.1e-07  Score=78.16  Aligned_cols=36  Identities=42%  Similarity=0.650  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|+|||||++||++|+.|.+.|++|+|+|+++..+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            379999999999999999999999999999988764

>TIGR02053 MerA mercuric reductase

Probab=98.52  E-value=1.2e-07  Score=78.45  Aligned_cols=33  Identities=36%  Similarity=0.591  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |||+||||||+|+++|..+++.|++|+|+||..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            799999999999999999999999999999865

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.52  E-value=1.3e-07  Score=83.48  Aligned_cols=36  Identities=39%  Similarity=0.532  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++|+||||||||+++|+.|+++|++|+|+|+.+.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            379999999999999999999999999999998765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK02106 choline dehydrogenase; Validated

Probab=98.52  E-value=1.2e-07  Score=80.08  Aligned_cols=38  Identities=39%  Similarity=0.521  Sum_probs=35.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~   38 (232)
                      |.+.+||+||||+|++|+.+|..|++ .|++|+|||+++
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            66678999999999999999999999 799999999995

>TIGR02053 MerA mercuric reductase

Probab=98.52  E-value=1.5e-06  Score=72.00  Aligned_cols=99  Identities=26%  Similarity=0.367  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++|+.+.+-..                                          
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence            58999999999999999999999999999987543100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC--C-CcEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG--D-STIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~-g~~~~a~~vV~A~  162 (232)
                         .         .+    -....+.+.|.+.  +++++++++|++++.++   .. ..+.+.  + ++++.+|.||.|.
T Consensus       205 ---~---------d~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~ViiA~  262 (463)
T TIGR02053       205 ---E---------EP----EISAAVEEALAEE--GIEVVTSAQVKAVSVRG---GG-KIITVEKPGGQGEVEADELLVAT  262 (463)
T ss_pred             ---c---------CH----HHHHHHHHHHHHc--CCEEEcCcEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEEeE
Confidence               0         00    0012334444432  89999999999998653   22 334432  2 3579999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |..+..
T Consensus       263 G~~p~~  268 (463)
T TIGR02053       263 GRRPNT  268 (463)
T ss_pred             CCCcCC
Confidence            987654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.52  E-value=9.7e-08  Score=74.30  Aligned_cols=34  Identities=38%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      ||+||||+|++|+.+|..|++.+ .+|+|||+++.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            79999999999999999999987 79999999875

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02487 zeta-carotene desaturase

Probab=98.51  E-value=2.8e-07  Score=77.41  Aligned_cols=62  Identities=31%  Similarity=0.422  Sum_probs=48.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc--------ce----eee----ecccHHHHHHHcCChHHHH
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT--------GA----ALT----LSPNAWLALDALGVSHKLT   67 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~--------~~----~~~----~~~~~~~~l~~~g~~~~~~   67 (232)
                      .+|+|||||++|+++|+.|++.|++|+|+|+.+..+..        +.    |.+    ..++..+.++++|+.+.+.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            59999999999999999999999999999998876421        11    111    2356788899999876643

>TIGR03452 mycothione_red mycothione reductase

Probab=98.51  E-value=2.2e-06  Score=70.64  Aligned_cols=98  Identities=21%  Similarity=0.366  Sum_probs=70.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||+|+.|+-+|..|++.|.+|+++|+.+.+...                +                         
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------~-------------------------  208 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------L-------------------------  208 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc----------------c-------------------------
Confidence            58999999999999999999999999999986432000                0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ...   + ...+.+ +.+  .+++++.+++|++++.++   .. +.+.+.+|+++.+|.|+.|.|..
T Consensus       209 -------------d~~---~-~~~l~~-~~~--~gI~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       209 -------------DED---I-SDRFTE-IAK--KKWDIRLGRNVTAVEQDG---DG-VTLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             -------------CHH---H-HHHHHH-HHh--cCCEEEeCCEEEEEEEcC---Ce-EEEEEcCCCEEEcCEEEEeeccC
Confidence                         000   0 112222 222  268999999999998653   33 66777788889999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ...
T Consensus       265 pn~  267 (452)
T TIGR03452       265 PNG  267 (452)
T ss_pred             cCC
Confidence            643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.50  E-value=1.9e-06  Score=68.80  Aligned_cols=109  Identities=21%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +...|+|||||.+|+.+|..|.++-  .+|++|||...-.-..           .|.+.         .           
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-----------lL~ev---------a-----------   50 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-----------LLYEV---------A-----------   50 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-----------hhhhh---------h-----------
Confidence            3468999999999999999999975  8899999987532110           01100         0           


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                       .+..            ....   ....+.+.+. ...++++..+ +|++|..++      -.|.+.++..+.+|++|+|
T Consensus        51 -~g~l------------~~~~---i~~p~~~~~~-~~~~v~~~~~-~V~~ID~~~------k~V~~~~~~~i~YD~LVva  106 (405)
T COG1252          51 -TGTL------------SESE---IAIPLRALLR-KSGNVQFVQG-EVTDIDRDA------KKVTLADLGEISYDYLVVA  106 (405)
T ss_pred             -cCCC------------Chhh---eeccHHHHhc-ccCceEEEEE-EEEEEcccC------CEEEeCCCccccccEEEEe
Confidence             0000            0000   0111222222 2224566654 799998764      3466777778999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      .|..+.
T Consensus       107 lGs~~~  112 (405)
T COG1252         107 LGSETN  112 (405)
T ss_pred             cCCcCC
Confidence            998764

>PRK06370 mercuric reductase; Validated

Probab=98.48  E-value=2.7e-06  Score=70.41  Aligned_cols=101  Identities=20%  Similarity=0.264  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence            58999999999999999999999999999987643100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-CcEEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-STIIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g~~~~a~~vV~A~G~  164 (232)
                         .         ..    -.+..+.+.|.+  .+++++++++|.+++.++  +...+.+...+ +.++.+|.||.|.|.
T Consensus       210 ---~---------~~----~~~~~l~~~l~~--~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G~  269 (463)
T PRK06370        210 ---E---------DE----DVAAAVREILER--EGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVGR  269 (463)
T ss_pred             ---c---------CH----HHHHHHHHHHHh--CCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcCC
Confidence               0         00    001233444443  289999999999998653  22113333333 457999999999998


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      ..+.
T Consensus       270 ~pn~  273 (463)
T PRK06370        270 VPNT  273 (463)
T ss_pred             CcCC
Confidence            7654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.48  E-value=2.6e-06  Score=70.79  Aligned_cols=99  Identities=22%  Similarity=0.314  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...                  .                       
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------------  222 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------A-----------------------  222 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------C-----------------------
Confidence            58999999999999999999999999999986533100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--C--cEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S--TIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g--~~~~a~~vV~A  161 (232)
                                   .    .-....+.+.|.+  .+++++.+++|+++..++   .. +.+.+.+  |  .++.+|.|+.|
T Consensus       223 -------------d----~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~i~~D~vl~a  279 (475)
T PRK06327        223 -------------D----EQVAKEAAKAFTK--QGLDIHLGVKIGEIKTGG---KG-VSVAYTDADGEAQTLEVDKLIVS  279 (475)
T ss_pred             -------------C----HHHHHHHHHHHHH--cCcEEEeCcEEEEEEEcC---CE-EEEEEEeCCCceeEEEcCEEEEc
Confidence                         0    0011233344443  389999999999998653   23 4455443  3  46999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      .|..+..
T Consensus       280 ~G~~p~~  286 (475)
T PRK06327        280 IGRVPNT  286 (475)
T ss_pred             cCCccCC
Confidence            9988754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.48  E-value=2.9e-06  Score=70.41  Aligned_cols=100  Identities=15%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            6 EDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .+|+|||||+.|+-+|..++.   .|.+|+|+|+.+.+-..                                       
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~---------------------------------------  228 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG---------------------------------------  228 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence            579999999999999977654   48999999987643100                                       


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                            +         .+    --+..+.+.|.+.  +++++.+++|+++..++  +.. ..+.+.+++++.+|.|+.|.
T Consensus       229 ------~---------d~----~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~i~~D~vl~a~  284 (486)
T TIGR01423       229 ------F---------DS----TLRKELTKQLRAN--GINIMTNENPAKVTLNA--DGS-KHVTFESGKTLDVDVVMMAI  284 (486)
T ss_pred             ------c---------CH----HHHHHHHHHHHHc--CCEEEcCCEEEEEEEcC--Cce-EEEEEcCCCEEEcCEEEEee
Confidence                  0         00    0123344555443  89999999999998653  222 55666778889999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |...+.
T Consensus       285 G~~Pn~  290 (486)
T TIGR01423       285 GRVPRT  290 (486)
T ss_pred             CCCcCc
Confidence            987654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.48  E-value=2.2e-06  Score=70.24  Aligned_cols=97  Identities=22%  Similarity=0.369  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~------------------------------------------  175 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK------------------------------------------  175 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc------------------------------------------
Confidence            58999999999999999999999999999986532000                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                        .+         ..    -....+.+.|.+.  +++++++++|.++..+   +.  + +.+.+|+++.+|.||.|+|..
T Consensus       176 --~~---------~~----~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~---~~--~-v~~~~g~~i~~D~vi~a~G~~  232 (427)
T TIGR03385       176 --LF---------DE----EMNQIVEEELKKH--EINLRLNEEVDSIEGE---ER--V-KVFTSGGVYQADMVILATGIK  232 (427)
T ss_pred             --cc---------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEecC---CC--E-EEEcCCCEEEeCEEEECCCcc
Confidence              00         00    0122334444433  8999999999999754   22  3 456678889999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       233 p~  234 (427)
T TIGR03385       233 PN  234 (427)
T ss_pred             CC
Confidence            53

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=2.6e-06  Score=70.59  Aligned_cols=100  Identities=22%  Similarity=0.360  Sum_probs=70.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-..                                         
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----------------------------------------  212 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----------------------------------------  212 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------------
Confidence            368999999999999999999999999999986533100                                         


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---C--CcEEEccEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---D--STIIKAKVLI  159 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~--g~~~~a~~vV  159 (232)
                          +         ..    -.+..+.+.|.+.  +++++.+++|++++.++   +. +.+.+.   +  ++++.+|.|+
T Consensus       213 ----~---------d~----~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~~~~g~~~~i~~D~vi  269 (466)
T PRK06115        213 ----T---------DT----ETAKTLQKALTKQ--GMKFKLGSKVTGATAGA---DG-VSLTLEPAAGGAAETLQADYVL  269 (466)
T ss_pred             ----C---------CH----HHHHHHHHHHHhc--CCEEEECcEEEEEEEcC---Ce-EEEEEEEcCCCceeEEEeCEEE
Confidence                0         00    0122344445443  89999999999997653   22 333321   2  3479999999


Q ss_pred             ecCCCchhh
Q 044609          160 GCDGVHSMV  168 (232)
Q Consensus       160 ~A~G~~S~~  168 (232)
                      .|.|..+..
T Consensus       270 ~a~G~~pn~  278 (466)
T PRK06115        270 VAIGRRPYT  278 (466)
T ss_pred             EccCCcccc
Confidence            999988654

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.47  E-value=2e-07  Score=77.64  Aligned_cols=46  Identities=9%  Similarity=0.011  Sum_probs=36.7

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA  169 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r  169 (232)
                      +++++.++++.+++..+   .. ..+.+.+|+++.+|.|+.|.|..++..
T Consensus       236 GV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        236 GTLFLEGVVPINIEKMD---DK-IKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             CCEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence            78999999998887653   22 556777888899999999999987643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.45  E-value=2.9e-06  Score=74.69  Aligned_cols=101  Identities=19%  Similarity=0.320  Sum_probs=73.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      ..++|||||+.|+-+|..|++.|.+|+|+|+.+.+-..               .+                         
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------~l-------------------------  185 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------QL-------------------------  185 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------hc-------------------------
Confidence            47999999999999999999999999999986532000               00                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  +++++.++.++++..+.+ +.. ..+.+.+|+++.+|+||.|.|..
T Consensus       186 -------------d~----~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~-~~~-~~v~~~dG~~i~~D~Vv~A~G~r  244 (847)
T PRK14989        186 -------------DQ----MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGV-EAR-KTMRFADGSELEVDFIVFSTGIR  244 (847)
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCC-Cce-EEEEECCCCEEEcCEEEECCCcc
Confidence                         00    0122344444433  899999999999976431 223 66788899999999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      .+
T Consensus       245 Pn  246 (847)
T PRK14989        245 PQ  246 (847)
T ss_pred             cC
Confidence            54

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.45  E-value=3.9e-06  Score=69.06  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence            58999999999999999999999999999986532100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                         .         ..    --...+.+.|.+.  +++++++++|+++..++   .. +.+.+.++ ++.+|.|+.|.|..
T Consensus       197 ---~---------~~----~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-v~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        197 ---E---------DR----DIADNIATILRDQ--GVDIILNAHVERISHHE---NQ-VQVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             ---c---------CH----HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEcCC-eEEeCEEEEeecCC
Confidence               0         00    0012334444433  89999999999998653   33 55666555 48999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ++.
T Consensus       254 pn~  256 (441)
T PRK08010        254 PAT  256 (441)
T ss_pred             cCC
Confidence            754

>PRK12831 putative oxidoreductase; Provisional

Probab=98.45  E-value=2.9e-07  Score=75.97  Aligned_cols=36  Identities=31%  Similarity=0.489  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            479999999999999999999999999999987755

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.44  E-value=2.9e-07  Score=74.55  Aligned_cols=35  Identities=34%  Similarity=0.618  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |++||+|||+|++|+++|+.|+++|.+|++||+..
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            35899999999999999999999999999999874

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.44  E-value=3e-07  Score=73.54  Aligned_cols=37  Identities=32%  Similarity=0.695  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ..+++|||||++|+++|+.|++.|++|.++||.+..+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            4689999999999999999999999999999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.44  E-value=3e-06  Score=74.40  Aligned_cols=99  Identities=23%  Similarity=0.397  Sum_probs=72.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..               .+                         
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~l-------------------------  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------QL-------------------------  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------hc-------------------------
Confidence            57999999999999999999999999999976532000               00                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    .....+.+.|.+.  +++++.++.++++..+   +.. ..|.+.+|+++.+|.||.|.|..
T Consensus       181 -------------d~----~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~---~~~-~~v~~~dG~~i~~D~Vi~a~G~~  237 (785)
T TIGR02374       181 -------------DQ----TAGRLLQRELEQK--GLTFLLEKDTVEIVGA---TKA-DRIRFKDGSSLEADLIVMAAGIR  237 (785)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEeCCceEEEEcC---Cce-EEEEECCCCEEEcCEEEECCCCC
Confidence                         00    0122334444433  8999999999998754   343 66788899999999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      .+
T Consensus       238 Pn  239 (785)
T TIGR02374       238 PN  239 (785)
T ss_pred             cC
Confidence            53

>PTZ00058 glutathione reductase; Provisional

Probab=98.41  E-value=5.3e-06  Score=69.89  Aligned_cols=101  Identities=16%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...                  +                      
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~----------------------  276 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------F----------------------  276 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------C----------------------
Confidence            358999999999999999999999999999986532100                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDG  163 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G  163 (232)
                                    ..    -....+.+.|.+.  +++++.++.|.++..++  +.. +.+...++ +++.+|.|+.|.|
T Consensus       277 --------------d~----~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~--~~~-v~v~~~~~~~~i~aD~VlvA~G  333 (561)
T PTZ00058        277 --------------DE----TIINELENDMKKN--NINIITHANVEEIEKVK--EKN-LTIYLSDGRKYEHFDYVIYCVG  333 (561)
T ss_pred             --------------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEecC--CCc-EEEEECCCCEEEECCEEEECcC
Confidence                          00    0122344455443  89999999999998653  222 44444444 5799999999999


Q ss_pred             Cchhh
Q 044609          164 VHSMV  168 (232)
Q Consensus       164 ~~S~~  168 (232)
                      .....
T Consensus       334 r~Pn~  338 (561)
T PTZ00058        334 RSPNT  338 (561)
T ss_pred             CCCCc
Confidence            87653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.41  E-value=3.4e-06  Score=69.30  Aligned_cols=94  Identities=18%  Similarity=0.371  Sum_probs=68.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.....                +                         
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------~-------------------------  187 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------M-------------------------  187 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh----------------c-------------------------
Confidence            57999999999999999999999999999986533100                0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ...    ....+.+.|.+.  +++++++++|++++.     .   .+.+.+|+++.+|.|+.|.|..
T Consensus       188 -------------d~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~-----~---~v~~~~g~~~~~D~vl~a~G~~  240 (438)
T PRK13512        188 -------------DAD----MNQPILDELDKR--EIPYRLNEEIDAING-----N---EVTFKSGKVEHYDMIIEGVGTH  240 (438)
T ss_pred             -------------CHH----HHHHHHHHHHhc--CCEEEECCeEEEEeC-----C---EEEECCCCEEEeCEEEECcCCC
Confidence                         000    012334444443  899999999999852     1   2445678889999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      .+
T Consensus       241 pn  242 (438)
T PRK13512        241 PN  242 (438)
T ss_pred             cC
Confidence            54

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.41  E-value=4.5e-07  Score=68.96  Aligned_cols=36  Identities=33%  Similarity=0.581  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +|++|||||.+|+.+|..|++.|.+|+|+||++..+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            699999999999999999999999999999998653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.41  E-value=4.8e-07  Score=74.46  Aligned_cols=37  Identities=38%  Similarity=0.485  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..++|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3479999999999999999999999999999998755

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.40  E-value=4.9e-07  Score=74.49  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRR--LGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~--~g~~v~viE~~~~~~   41 (232)
                      ..+|+||||||||+++|..|++  .|++|+|+|+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4689999999999999999997  799999999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.38  E-value=6.7e-06  Score=68.63  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            48999999999999999999999999999874

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.37  E-value=5e-07  Score=75.23  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |||+|||+||+|+++|..|+++|++|++||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999998764

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.37  E-value=6.4e-06  Score=68.32  Aligned_cols=97  Identities=22%  Similarity=0.312  Sum_probs=69.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++......                                       .   
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~---------------------------------------~---  216 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ---------------------------------------E---  216 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC---------------------------------------C---
Confidence            5899999999999999999999999999986321100                                       0   


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .+.    ....+.+.|.+.  +++++.+++|.+++.++   .. +.+.+.++ ++.+|.||.|.|..
T Consensus       217 -------------~~~----~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~  272 (468)
T PRK14694        217 -------------DPA----VGEAIEAAFRRE--GIEVLKQTQASEVDYNG---RE-FILETNAG-TLRAEQLLVATGRT  272 (468)
T ss_pred             -------------CHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEECCC-EEEeCEEEEccCCC
Confidence                         000    022334444432  89999999999997653   33 55655544 69999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ++.
T Consensus       273 pn~  275 (468)
T PRK14694        273 PNT  275 (468)
T ss_pred             CCc
Confidence            754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.36  E-value=5.8e-07  Score=77.36  Aligned_cols=36  Identities=42%  Similarity=0.609  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            479999999999999999999999999999998765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.36  E-value=6.5e-06  Score=67.84  Aligned_cols=98  Identities=19%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|.+.|.+|+++++.+..-..                                          
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  187 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------------------  187 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------------------
Confidence            58999999999999999999999999999875432000                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                        .  +       ..    --...+.+.|.+.  +++++++++|+++..+   +.. ..+.+. +.++.||.||.|+|..
T Consensus       188 --~--~-------~~----~~~~~l~~~l~~~--gI~v~~~~~v~~i~~~---~~~-~~v~~~-~~~i~~d~vi~a~G~~  245 (444)
T PRK09564        188 --S--F-------DK----EITDVMEEELREN--GVELHLNEFVKSLIGE---DKV-EGVVTD-KGEYEADVVIVATGVK  245 (444)
T ss_pred             --h--c-------CH----HHHHHHHHHHHHC--CCEEEcCCEEEEEecC---CcE-EEEEeC-CCEEEcCEEEECcCCC
Confidence              0  0       00    0012233344332  7899999999999643   332 444444 4469999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       246 p~  247 (444)
T PRK09564        246 PN  247 (444)
T ss_pred             cC
Confidence            53

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.35  E-value=5.9e-07  Score=80.38  Aligned_cols=37  Identities=35%  Similarity=0.445  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++|+||||||||+++|..|+++|++|+|+|+.+.++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            4699999999999999999999999999999987653

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.34  E-value=3.9e-06  Score=70.44  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEecCCCchh-hhhhhcC
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIGCDGVHSM-VAQWLGL  174 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~A~G~~S~-~r~~~~~  174 (232)
                      ..++...+...+.+.+.  |++++.+++|+++..++  +.. +.|.+.   +|  .++.|+.||+|+|.|+. +.+.++.
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRV-TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence            47888999988877764  88999999999998764  333 444432   34  37999999999999984 6666676


Q ss_pred             CCCcc
Q 044609          175 SESIN  179 (232)
Q Consensus       175 ~~~~~  179 (232)
                      +.+..
T Consensus       200 ~~~i~  204 (516)
T TIGR03377       200 DIRMF  204 (516)
T ss_pred             CCcee
Confidence            54433

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.34  E-value=7.4e-06  Score=67.95  Aligned_cols=98  Identities=15%  Similarity=0.255  Sum_probs=68.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                                          
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence            58999999999999999999999999999987643100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--C--cEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S--TIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g--~~~~a~~vV~A  161 (232)
                         +         ..    -.+..+.+.|.+   .++++.+++|++++..+   +. +.+.+.+  +  .++.+|.||.|
T Consensus       213 ---~---------d~----~~~~~~~~~l~~---~v~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~~~~i~~D~vi~a  269 (471)
T PRK06467        213 ---A---------DK----DIVKVFTKRIKK---QFNIMLETKVTAVEAKE---DG-IYVTMEGKKAPAEPQRYDAVLVA  269 (471)
T ss_pred             ---C---------CH----HHHHHHHHHHhh---ceEEEcCCEEEEEEEcC---CE-EEEEEEeCCCcceEEEeCEEEEe
Confidence               0         00    001223334433   27788899999997653   33 4455433  2  36999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      .|..++.
T Consensus       270 ~G~~pn~  276 (471)
T PRK06467        270 VGRVPNG  276 (471)
T ss_pred             ecccccC
Confidence            9998765

>PRK14727 putative mercuric reductase; Provisional

Probab=98.34  E-value=8.7e-06  Score=67.71  Aligned_cols=97  Identities=18%  Similarity=0.301  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++......                   .                       
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~-----------------------  226 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR-------------------E-----------------------  226 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc-------------------c-----------------------
Confidence            5799999999999999999999999999986421100                   0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .+    .....+.+.|.+.  +++++.+++|+++..++   .. +.+.+.++ ++.+|.||.|.|..
T Consensus       227 -------------d~----~~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~g-~i~aD~VlvA~G~~  282 (479)
T PRK14727        227 -------------DP----LLGETLTACFEKE--GIEVLNNTQASLVEHDD---NG-FVLTTGHG-ELRAEKLLISTGRH  282 (479)
T ss_pred             -------------hH----HHHHHHHHHHHhC--CCEEEcCcEEEEEEEeC---CE-EEEEEcCC-eEEeCEEEEccCCC
Confidence                         00    0012334444432  89999999999997653   33 55666655 58999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ++.
T Consensus       283 pn~  285 (479)
T PRK14727        283 ANT  285 (479)
T ss_pred             CCc
Confidence            754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.33  E-value=9.6e-07  Score=73.16  Aligned_cols=37  Identities=41%  Similarity=0.624  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+.++
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            3799999999999999999999999999999987653

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.32  E-value=8.1e-06  Score=66.42  Aligned_cols=99  Identities=25%  Similarity=0.321  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+.+|..|+++|++|+++|+.+.+.....                                        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~----------------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL----------------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence            5899999999999999999999999999999876532200                                        


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEE--EEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAI--INLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~--v~~~~g~~~~a~~vV~A~G  163 (232)
                                   .    ..-...+.+.|.+.  +++++++.++.+++...  +.. ..  +...++..+.+|.++.+.|
T Consensus       177 -------------~----~~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~~d~~~~~~g  234 (415)
T COG0446         177 -------------D----PEVAEELAELLEKY--GVELLLGTKVVGVEGKG--NTL-VVERVVGIDGEEIKADLVIIGPG  234 (415)
T ss_pred             -------------h----HHHHHHHHHHHHHC--CcEEEeCCceEEEEccc--Ccc-eeeEEEEeCCcEEEeeEEEEeec
Confidence                         0    00122334444443  68999999999998764  221 22  5777888899999999999


Q ss_pred             Cch
Q 044609          164 VHS  166 (232)
Q Consensus       164 ~~S  166 (232)
                      ...
T Consensus       235 ~~p  237 (415)
T COG0446         235 ERP  237 (415)
T ss_pred             ccc
Confidence            876

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.30  E-value=9.7e-07  Score=77.22  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++|+||||||||+++|..|+++|++|+|+|+.+.+
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            479999999999999999999999999999997654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.29  E-value=7.8e-07  Score=77.82  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ..+|+||||||||+++|+.|++.|++|+++|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            369999999999999999999999999999985

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.29  E-value=1.7e-05  Score=65.76  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  207 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------  207 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence            58999999999999999999999999999987543100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G  163 (232)
                         +         ..    --...+.+.|.+  . +++++++++.+++.++  +.. +.+...++  .++.+|.||.|.|
T Consensus       208 ---~---------d~----~~~~~~~~~l~~--~-I~i~~~~~v~~i~~~~--~~~-v~~~~~~~~~~~i~~D~vi~a~G  265 (460)
T PRK06292        208 ---E---------DP----EVSKQAQKILSK--E-FKIKLGAKVTSVEKSG--DEK-VEELEKGGKTETIEADYVLVATG  265 (460)
T ss_pred             ---h---------hH----HHHHHHHHHHhh--c-cEEEcCCEEEEEEEcC--Cce-EEEEEcCCceEEEEeCEEEEccC
Confidence               0         00    001223333433  2 7899999999997653  223 44444344  4799999999999


Q ss_pred             Cchhhh
Q 044609          164 VHSMVA  169 (232)
Q Consensus       164 ~~S~~r  169 (232)
                      ......
T Consensus       266 ~~p~~~  271 (460)
T PRK06292        266 RRPNTD  271 (460)
T ss_pred             CccCCC
Confidence            876543

>PLN02529 lysine-specific histone demethylase 1

Probab=98.28  E-value=1.3e-06  Score=75.21  Aligned_cols=37  Identities=46%  Similarity=0.688  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..++|+|||||++|+++|..|++.|++|+|+|+....
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~  195 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence            3479999999999999999999999999999998754

>PLN02546 glutathione reductase

Probab=98.27  E-value=1.6e-05  Score=67.06  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------  290 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------  290 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence            58999999999999999999999999999986532100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                         +         .    .-.+..+.+.|.+.  +++++.++++.++...+  +.. +.+.+.+++...+|.||.|.|..
T Consensus       291 ---~---------d----~~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~--~g~-v~v~~~~g~~~~~D~Viva~G~~  349 (558)
T PLN02546        291 ---F---------D----EEVRDFVAEQMSLR--GIEFHTEESPQAIIKSA--DGS-LSLKTNKGTVEGFSHVMFATGRK  349 (558)
T ss_pred             ---c---------C----HHHHHHHHHHHHHC--CcEEEeCCEEEEEEEcC--CCE-EEEEECCeEEEecCEEEEeeccc
Confidence               0         0    00122334444432  89999999999997643  233 55666655545589999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      .+.
T Consensus       350 Pnt  352 (558)
T PLN02546        350 PNT  352 (558)
T ss_pred             cCC
Confidence            764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.27  E-value=1.2e-05  Score=65.74  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             cEEEECCCHHHHHHHHHHHh--------------CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccC
Q 044609            7 DVVIIGAGIAGLATAVALRR--------------LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAP   72 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~--------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~   72 (232)
                      .|+|||||++|+-+|..|+.              .+.+|+++|+.+.+-..                             
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------------------------  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------------------------  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence            79999999999999999875              36778888875432000                             


Q ss_pred             ceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609           73 AKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI  152 (232)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~  152 (232)
                                        +       +    .-.+..+.+.|.+.  +++++.+++|.++..+    .    |.+.+|++
T Consensus       226 ------------------~-------~----~~~~~~~~~~L~~~--gV~v~~~~~v~~v~~~----~----v~~~~g~~  266 (424)
T PTZ00318        226 ------------------F-------D----QALRKYGQRRLRRL--GVDIRTKTAVKEVLDK----E----VVLKDGEV  266 (424)
T ss_pred             ------------------C-------C----HHHHHHHHHHHHHC--CCEEEeCCeEEEEeCC----E----EEECCCCE
Confidence                              0       0    00133445555543  8999999999988532    1    44678889


Q ss_pred             EEccEEEecCCCch
Q 044609          153 IKAKVLIGCDGVHS  166 (232)
Q Consensus       153 ~~a~~vV~A~G~~S  166 (232)
                      +.+|.+|.|.|...
T Consensus       267 i~~d~vi~~~G~~~  280 (424)
T PTZ00318        267 IPTGLVVWSTGVGP  280 (424)
T ss_pred             EEccEEEEccCCCC
Confidence            99999999999654

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.26  E-value=3e-06  Score=60.89  Aligned_cols=37  Identities=38%  Similarity=0.561  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA   42 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~   42 (232)
                      .||+|||+|-+||++|+..+++  .++|.|||..-.|+.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            6999999999999999999965  689999999877743

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.26  E-value=1.4e-06  Score=71.94  Aligned_cols=36  Identities=39%  Similarity=0.558  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            479999999999999999999999999999998765

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.26  E-value=1.5e-06  Score=75.33  Aligned_cols=37  Identities=41%  Similarity=0.624  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+...++
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            4799999999999999999999999999999987663

>PRK13748 putative mercuric reductase; Provisional

Probab=98.26  E-value=1.7e-05  Score=67.43  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++......                   .                       
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-------------------~-----------------------  308 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR-------------------E-----------------------  308 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc-------------------c-----------------------
Confidence            5899999999999999999999999999997421100                   0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .+    -....+.+.|.+.  +++++.+++|++++.++   .. +.+.+.++ ++.+|.||.|.|..
T Consensus       309 -------------d~----~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~  364 (561)
T PRK13748        309 -------------DP----AIGEAVTAAFRAE--GIEVLEHTQASQVAHVD---GE-FVLTTGHG-ELRADKLLVATGRA  364 (561)
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEcCCEEEEEEecC---CE-EEEEecCC-eEEeCEEEEccCCC
Confidence                         00    0012334444433  89999999999997653   33 55666555 59999999999987


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      .+.
T Consensus       365 pn~  367 (561)
T PRK13748        365 PNT  367 (561)
T ss_pred             cCC
Confidence            654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.25  E-value=1.8e-06  Score=70.51  Aligned_cols=37  Identities=30%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~~~   41 (232)
                      ...|+||||||||+.+|..|. +.|++|+|+||.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            358999999999999999764 6799999999998874

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.24  E-value=1.1e-05  Score=60.83  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCCCcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-------IKALVLEKSDGLRA   42 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-------~~v~viE~~~~~~~   42 (232)
                      ..+|+|||+|..||++|+.+.+..       .+|++++-+..+..
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T   47 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT   47 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence            458999999999999998887732       68999987766543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.23  E-value=1.9e-05  Score=65.75  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||||+.|+-+|..|++.|.+|+++++..... .                  +                       
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~------------------~-----------------------  218 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-G------------------F-----------------------  218 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-c------------------c-----------------------
Confidence            479999999999999999999999999998631110 0                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A~  162 (232)
                                   ..    -....+.+.|.+.  +++++.++.+.++...+  + . +.+.+.++   +++.+|.|+.|.
T Consensus       219 -------------d~----~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~--~-~-~~v~~~~~~~~~~i~~D~vl~a~  275 (484)
T TIGR01438       219 -------------DQ----DCANKVGEHMEEH--GVKFKRQFVPIKVEQIE--A-K-VKVTFTDSTNGIEEEYDTVLLAI  275 (484)
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEeCceEEEEEEcC--C-e-EEEEEecCCcceEEEeCEEEEEe
Confidence                         00    0122344455443  89999999999987653  2 2 45555554   379999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |...+.
T Consensus       276 G~~pn~  281 (484)
T TIGR01438       276 GRDACT  281 (484)
T ss_pred             cCCcCC
Confidence            987654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.22  E-value=2e-06  Score=73.92  Aligned_cols=36  Identities=36%  Similarity=0.516  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            369999999999999999999999999999998765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.21  E-value=2.5e-06  Score=70.60  Aligned_cols=36  Identities=39%  Similarity=0.641  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|||+||+|+++|..|+++|++|+++|+.+.+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            479999999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.20  E-value=2.3e-05  Score=67.20  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+...                  +                       
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------~-----------------------  351 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------L-----------------------  351 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------C-----------------------
Confidence            47999999999999999999999999999987643100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-------C--------
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-------S--------  150 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-------g--------  150 (232)
                                   ..    -....+.+.+.+. .+++++.++.|.++...++ +.. +.+.+.+       +        
T Consensus       352 -------------d~----eis~~l~~~ll~~-~GV~I~~~~~V~~I~~~~~-~~~-v~v~~~~~~~~~~~~~~~~~~~~  411 (659)
T PTZ00153        352 -------------DA----DVAKYFERVFLKS-KPVRVHLNTLIEYVRAGKG-NQP-VIIGHSERQTGESDGPKKNMNDI  411 (659)
T ss_pred             -------------CH----HHHHHHHHHHhhc-CCcEEEcCCEEEEEEecCC-ceE-EEEEEeccccccccccccccccc
Confidence                         00    0012223333221 3799999999999976532 222 4444321       1        


Q ss_pred             cEEEccEEEecCCCchhh
Q 044609          151 TIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       151 ~~~~a~~vV~A~G~~S~~  168 (232)
                      +++.+|.|+.|+|...+.
T Consensus       412 ~~i~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        412 KETYVDSCLVATGRKPNT  429 (659)
T ss_pred             eEEEcCEEEEEECcccCC
Confidence            269999999999988654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.19  E-value=1.8e-06  Score=72.55  Aligned_cols=35  Identities=43%  Similarity=0.607  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +++|+||||+|.+|+++|..|++.|.+|+|+|++.
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            56999999999999999999999999999999985

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.18  E-value=2e-05  Score=63.30  Aligned_cols=101  Identities=18%  Similarity=0.245  Sum_probs=78.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      -.|+++|+|..|+-+|..|...+++|+++++.+.+-..                +                         
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~----------------l-------------------------  252 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR----------------L-------------------------  252 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh----------------h-------------------------
Confidence            46999999999999999999999999999987643110                0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                               .   .    .--+..+...|.+.  +++++.++.+.+++.+++ |+. ..|.+.+|+++.||+||.+.|+.
T Consensus       253 ---------f---~----~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~-Gev-~~V~l~dg~~l~adlvv~GiG~~  312 (478)
T KOG1336|consen  253 ---------F---G----PSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSD-GEV-SEVKLKDGKTLEADLVVVGIGIK  312 (478)
T ss_pred             ---------h---h----HHHHHHHHHHHHhc--CeEEEEecceeecccCCC-CcE-EEEEeccCCEeccCeEEEeeccc
Confidence                     0   0    00133344455543  899999999999988765 666 88999999999999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      +.
T Consensus       313 p~  314 (478)
T KOG1336|consen  313 PN  314 (478)
T ss_pred             cc
Confidence            64

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.17  E-value=3.1e-06  Score=72.70  Aligned_cols=36  Identities=39%  Similarity=0.609  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            478999999999999999999999999999998865

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.16  E-value=8e-05  Score=58.97  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      +....++...+...|.+.+.  |++++.+++|+++..++  +.. ..|.+.+| ++.||.||+|+|.++.
T Consensus       129 ~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       129 PDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKV-TAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             CCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEE-EEEEcCCC-EEECCEEEEcCChhhh
Confidence            34568889999999988765  78999999999998764  333 55777677 6999999999999985

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.15  E-value=5.8e-06  Score=65.84  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhh
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      ..+..++++.++  |.+|++...|.+|..+.  |.. +.|.++||+++.++.||--++.|-..-+++
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka-~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKA-VGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccC--CeE-EEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            345555555554  78999999999999876  565 899999999999999999998888776666

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.13  E-value=4.9e-06  Score=66.43  Aligned_cols=36  Identities=44%  Similarity=0.482  Sum_probs=33.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|+|||+|++|+.+|..|++.|++|+++|+.+.+.
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            699999999999999999999999999999987663

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.11  E-value=4.2e-05  Score=64.24  Aligned_cols=94  Identities=26%  Similarity=0.320  Sum_probs=66.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.+.+|+++|+.+.+..                                           
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------------------------------------------  389 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------------------------------------------  389 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence            5899999999999999999999999999986542200                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~  160 (232)
                                           ...+.+.|.+ ..++++++++.++++..++  +.. ..|.+.+   +  +++.||.|+.
T Consensus       390 ---------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~~~~~i~~D~vi~  444 (515)
T TIGR03140       390 ---------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDG--DKV-TGIRYQDRNSGEEKQLDLDGVFV  444 (515)
T ss_pred             ---------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCC--CEE-EEEEEEECCCCcEEEEEcCEEEE
Confidence                                 0012233332 2489999999999997653  232 3354432   2  3789999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|....
T Consensus       445 a~G~~Pn  451 (515)
T TIGR03140       445 QIGLVPN  451 (515)
T ss_pred             EeCCcCC
Confidence            9998753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.10  E-value=3.8e-05  Score=60.57  Aligned_cols=98  Identities=15%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.+.+|+++++.+....                                           
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~-------------------------------------------  183 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------------------------------------  183 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence            5899999999999999999999999999998642200                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC------CcEEEccEEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD------STIIKAKVLI  159 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~------g~~~~a~~vV  159 (232)
                                   .    ...+..+.+.|.+.  +++++.++.++++..++  +.. ..|.+.+      .+++.+|.||
T Consensus       184 -------------~----~~~~~~~~~~l~~~--gV~i~~~~~v~~v~~~~--~~~-~~v~~~~~~~~~~~~~i~~D~vv  241 (321)
T PRK10262        184 -------------E----KILIKRLMDKVENG--NIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLF  241 (321)
T ss_pred             -------------C----HHHHHHHHhhccCC--CeEEEeCCEEEEEEcCC--ccE-EEEEEEEcCCCCeEEEEECCEEE
Confidence                         0    00012223333322  78999999999997643  222 2344332      1379999999


Q ss_pred             ecCCCchhh
Q 044609          160 GCDGVHSMV  168 (232)
Q Consensus       160 ~A~G~~S~~  168 (232)
                      .|.|.....
T Consensus       242 ~a~G~~p~~  250 (321)
T PRK10262        242 VAIGHSPNT  250 (321)
T ss_pred             EEeCCccCh
Confidence            999987643

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.09  E-value=3e-06  Score=64.54  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CC-cEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GI-KALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~-~v~viE~~~   38 (232)
                      +++.|+|||||.+|+++|..+.++ +. +|.|+|..+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            568999999999999999999986 43 788888654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.09  E-value=1.8e-05  Score=64.59  Aligned_cols=46  Identities=13%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA  169 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r  169 (232)
                      +.+|+++++|++|+.++   .. +.|.+.+|+++.||.||.|.......+
T Consensus       223 g~~i~l~~~V~~I~~~~---~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  223 GGEIRLNTPVTRIERED---GG-VTVTTEDGETIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             GGGEESSEEEEEEEEES---SE-EEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred             CceeecCCcceeccccc---cc-cccccccceEEecceeeecCchhhhhh
Confidence            45899999999999985   44 889999999999999999997765433

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.08  E-value=2.7e-05  Score=61.73  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcc----eeeeecccHHHHHHHcCChHHHHhhccCceeeEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATG----AALTLSPNAWLALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      ...|+|||||.++.-++..|.+++.  +|.++=|+.......    ....+.|...+.+..+....+  ....       
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R--~~~l-------  260 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEER--RELL-------  260 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHH--HHHH-------
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHH--HHHH-------
Confidence            4689999999999999999998764  899999987653211    112334444444444322111  1000       


Q ss_pred             EEcCCCceeEEeccCCCCCCCCceeeeehHHH---HHHHhh-hC---CCCeEEeCceEEEEEecCCCCCccEEEEeCC--
Q 044609           79 TNLGTGATQELSYAGKSGRIGSGLRSVHRQSL---LEALAD-EL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--  149 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~-~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--  149 (232)
                                 ....     ......++...+   .+.+++ .+   ..+++..+++|++++..++ + . +.+.+.+  
T Consensus       261 -----------~~~~-----~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~-~-~~l~~~~~~  321 (341)
T PF13434_consen  261 -----------REQR-----HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-G-G-VRLTLRHRQ  321 (341)
T ss_dssp             -----------HHTG-----GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--S-S-EEEEEEETT
T ss_pred             -----------HHhH-----hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-C-E-EEEEEEECC
Confidence                       0000     000112333222   222222 11   1478999999999998752 2 3 6676654  


Q ss_pred             -C--cEEEccEEEecCCC
Q 044609          150 -S--TIIKAKVLIGCDGV  164 (232)
Q Consensus       150 -g--~~~~a~~vV~A~G~  164 (232)
                       +  .++.+|.||.|||-
T Consensus       322 ~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  322 TGEEETLEVDAVILATGY  339 (341)
T ss_dssp             T--EEEEEESEEEE---E
T ss_pred             CCCeEEEecCEEEEcCCc
Confidence             2  37899999999995

>PLN02785 Protein HOTHEAD

Probab=98.07  E-value=5.2e-06  Score=70.35  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+||+||||+|.+|+.+|..|++ +.+|+|||++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35999999999999999999999 699999999974

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=98.07  E-value=4.3e-05  Score=57.79  Aligned_cols=74  Identities=16%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  230 (232)
                      |+++|+|||.+|..|+.+...  .......+.|....+...+....-..++++...+.+++++.+.++..+.+..+
T Consensus         2 A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~   75 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGP   75 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCC
Confidence            789999999999999999733  33455667787777666666666677888877799999999999998877654

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.06  E-value=6.3e-06  Score=69.90  Aligned_cols=35  Identities=40%  Similarity=0.645  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||+||+|+++|..|++.|++|+++|+.+.+
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            68999999999999999999999999999998765

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.05  E-value=6.6e-06  Score=68.41  Aligned_cols=35  Identities=40%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            69999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.05  E-value=2.9e-05  Score=62.26  Aligned_cols=53  Identities=17%  Similarity=0.197  Sum_probs=39.0

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEEecCCCc-hhhhhh
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLIGCDGVH-SMVAQW  171 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV~A~G~~-S~~r~~  171 (232)
                      ...+.|.+.  |+++..++.|+++..+.        |++.+|. ++.|+.+|=|+|.. |.+-+.
T Consensus       214 ~a~~~L~~~--GV~v~l~~~Vt~v~~~~--------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~  268 (405)
T COG1252         214 YAERALEKL--GVEVLLGTPVTEVTPDG--------VTLKDGEEEIPADTVVWAAGVRASPLLKD  268 (405)
T ss_pred             HHHHHHHHC--CCEEEcCCceEEECCCc--------EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence            344455543  89999999999997542        4566666 59999999999976 455444

>TIGR01810 betA choline dehydrogenase

Probab=98.04  E-value=4.7e-06  Score=70.22  Aligned_cols=33  Identities=39%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      |+||||+|.+|+.+|..|++.+ ++|+|||+++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999988 79999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.03  E-value=6e-06  Score=67.52  Aligned_cols=36  Identities=42%  Similarity=0.487  Sum_probs=33.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|+||||||+|+++|..|++.|++|+++|+.+.++
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            689999999999999999999999999999988763

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.00  E-value=8.8e-06  Score=64.40  Aligned_cols=37  Identities=35%  Similarity=0.543  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcE--EEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKA--LVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v--~viE~~~~~~   41 (232)
                      ..+|+|||||++||++|++|+|.+-++  +++|..+..+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            368999999999999999999997665  5699988763

>PLN03000 amine oxidase

Probab=97.99  E-value=1.1e-05  Score=70.30  Aligned_cols=37  Identities=46%  Similarity=0.663  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ..+|+|||||++|+++|..|++.|++|+|+|+...++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            4799999999999999999999999999999987653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.95  E-value=0.00018  Score=59.38  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.94  E-value=1.5e-05  Score=68.23  Aligned_cols=36  Identities=33%  Similarity=0.488  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|||+|++|+++|..|++.|++|+|+|+.+.+
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999998765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.93  E-value=0.00012  Score=61.49  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=66.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||.+|+-+|..|++.+.+|+++++.+.+...                                          
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~------------------------------------------  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD------------------------------------------  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc------------------------------------------
Confidence            58999999999999999999999999999876532100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~  160 (232)
                                            ..+.+.+.+ ..++++++++.++++..++  +.. ..+.+.   ++  +++.||.|+.
T Consensus       390 ----------------------~~l~~~l~~-~~gI~i~~~~~v~~i~~~~--g~v-~~v~~~~~~~g~~~~i~~D~v~~  443 (517)
T PRK15317        390 ----------------------QVLQDKLRS-LPNVTIITNAQTTEVTGDG--DKV-TGLTYKDRTTGEEHHLELEGVFV  443 (517)
T ss_pred             ----------------------HHHHHHHhc-CCCcEEEECcEEEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEE
Confidence                                  011222322 2489999999999998653  332 334443   33  3689999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|....
T Consensus       444 ~~G~~p~  450 (517)
T PRK15317        444 QIGLVPN  450 (517)
T ss_pred             eECCccC
Confidence            9998753

>PLN02976 amine oxidase

Probab=97.91  E-value=1.7e-05  Score=72.06  Aligned_cols=36  Identities=36%  Similarity=0.640  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++|+|||||++|+++|+.|++.|++|+|||+...+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            379999999999999999999999999999998665

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.86  E-value=0.0004  Score=54.00  Aligned_cols=93  Identities=19%  Similarity=0.312  Sum_probs=65.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.+.+|+++++.+....                                           
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------------------------------------------  178 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA-------------------------------------------  178 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence            5899999999999999999999999999998532100                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe---CCC--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL---GDS--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g--~~~~a~~vV~  160 (232)
                                           ...+.+.|.+ ..+++++++++++++..++   .. ..+.+   .++  .++.+|.||.
T Consensus       179 ---------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vi~  232 (300)
T TIGR01292       179 ---------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDN---KV-EGVKIKNTVTGEEEELKVDGVFI  232 (300)
T ss_pred             ---------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccC---cE-EEEEEEecCCCceEEEEccEEEE
Confidence                                 0112333332 2378899999999987542   22 23332   223  4799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       233 a~G~~~~  239 (300)
T TIGR01292       233 AIGHEPN  239 (300)
T ss_pred             eeCCCCC
Confidence            9997653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.79  E-value=0.00038  Score=55.91  Aligned_cols=48  Identities=17%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      .+.+.|.+.  +++++.++++.++..    +    .+.+.+|+++.+|.||.|.|...
T Consensus       196 ~~~~~l~~~--gV~v~~~~~v~~i~~----~----~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       196 LVLRLLARR--GIEVHEGAPVTRGPD----G----ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHC--CCEEEeCCeeEEEcC----C----eEEeCCCCEEecCEEEEccCCCh
Confidence            344455543  899999999988742    2    24557888999999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.75  E-value=0.00036  Score=55.85  Aligned_cols=64  Identities=20%  Similarity=0.171  Sum_probs=48.4

Q ss_pred             ehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCCch-----------hhhhh
Q 044609          106 HRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGVHS-----------MVAQW  171 (232)
Q Consensus       106 ~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~~S-----------~~r~~  171 (232)
                      ....+++.|...+.  +++++++++|+++  ++   .. +.+.+.++ ..+.||.||+|+|..|           .+.+.
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~  157 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---GT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQ  157 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---Cc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHH
Confidence            45677888877764  8999999999999  22   23 66776543 4799999999999876           45677


Q ss_pred             hcCC
Q 044609          172 LGLS  175 (232)
Q Consensus       172 ~~~~  175 (232)
                      +|+.
T Consensus       158 lGh~  161 (376)
T TIGR03862       158 RGVS  161 (376)
T ss_pred             CCCc
Confidence            7766

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.74  E-value=0.00049  Score=55.03  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      ..|+|||+|+.|+-+|..|.+.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99998753

>PRK12831 putative oxidoreductase; Provisional

Probab=97.74  E-value=0.00059  Score=56.62  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999754

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.72  E-value=3.7e-05  Score=64.11  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~   40 (232)
                      .+||.||||||-||+.+|..|++. ..+|+++|++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            359999999999999999999986 6899999998765

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.72  E-value=5.5e-05  Score=59.17  Aligned_cols=36  Identities=31%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      ...|+|||+||||+.+|..|-++  +++|.|+|+.+.+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            36899999999999999999884  6899999999876

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.70  E-value=6.6e-05  Score=61.03  Aligned_cols=45  Identities=36%  Similarity=0.471  Sum_probs=33.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALT   48 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~   48 (232)
                      .+|||+|+|-|+.-+.+|..|++.|.+|+.+|+++.-+...+.+.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~   47 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN   47 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence            569999999999999999999999999999999998766555444

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=4.2e-05  Score=58.73  Aligned_cols=37  Identities=24%  Similarity=0.453  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++..|-|||||.||.-+|++++++|++|.++|-++..
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            4567999999999999999999999999999987643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.67  E-value=0.00082  Score=55.73  Aligned_cols=33  Identities=27%  Similarity=0.512  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||+|..|+-+|..|++.|. +|+++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999998 899998754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.65  E-value=0.002  Score=52.80  Aligned_cols=35  Identities=43%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~----g~~v~viE~~~~~   40 (232)
                      .+.=|||+|+|+|++|.+|-|.    |-+|.|+|+.+.+
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            4678999999999999999985    5699999998755

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.64  E-value=0.0006  Score=55.06  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                      ++++++++.|+.+....      -.|.+.+|+++..+.+++|+|..
T Consensus       141 gIe~~~~t~v~~~D~~~------K~l~~~~Ge~~kys~LilATGs~  180 (478)
T KOG1336|consen  141 GIELILGTSVVKADLAS------KTLVLGNGETLKYSKLIIATGSS  180 (478)
T ss_pred             CceEEEcceeEEeeccc------cEEEeCCCceeecceEEEeecCc
Confidence            78999999999998764      45778999999999999999993

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.63  E-value=6.5e-05  Score=66.34  Aligned_cols=36  Identities=44%  Similarity=0.601  Sum_probs=34.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +.|+|||+||+||++|-+|.|.|+-|+|+||....+
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence            689999999999999999999999999999998763

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=7.4e-05  Score=57.69  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+||.+|||||-+||+||...++.|.+|.++|--
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            4699999999999999999999999999999954

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.59  E-value=9.6e-05  Score=57.27  Aligned_cols=37  Identities=32%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||.++||||-.|++.|...+..|.++.++|-.-..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l   55 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL   55 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence            3599999999999999999999999999999976433

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.00023  Score=53.00  Aligned_cols=57  Identities=19%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC-------cceeeeecccHHHHHHHcCCh
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-------TGAALTLSPNAWLALDALGVS   63 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~-------~~~~~~~~~~~~~~l~~~g~~   63 (232)
                      +++|||+|..|.++|..|.+.|+.|+++|+++....       ..........-...|++.|+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            699999999999999999999999999999875421       122333444456778887764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.50  E-value=0.00015  Score=50.90  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|+|||..|.++|..|+++|++|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999865

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.48  E-value=0.00021  Score=51.36  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.47  E-value=0.0022  Score=54.61  Aligned_cols=59  Identities=15%  Similarity=0.066  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchhh
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~~  168 (232)
                      ..+.+.|.+.+.  +++++.++.++++..+++ |.. ..+..   .+|+  .+.|+.||+|+|.++.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAV-VGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeE-EEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            457777776653  789999999999987532 454 44433   4564  67899999999998854

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.41  E-value=0.0025  Score=56.27  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            5899999999999999999999997 99999764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.40  E-value=0.00033  Score=55.05  Aligned_cols=38  Identities=32%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.+...+|+|||+|..|.++|..|++.|++|+++.|+.
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            56666789999999999999999999999999999865

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.38  E-value=0.0003  Score=54.50  Aligned_cols=40  Identities=33%  Similarity=0.482  Sum_probs=34.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |.+.-..|.|||+|..|...|..+++.|++|+++|+.+..
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            4443358999999999999999999999999999988654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.37  E-value=0.0035  Score=53.36  Aligned_cols=33  Identities=36%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            589999999999999999999999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.35  E-value=0.0021  Score=58.30  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+|+|||+|+.|+-+|..|++.|. .|+|+|..+...                                           
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~-------------------------------------------  354 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS-------------------------------------------  354 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-------------------------------------------
Confidence            589999999999999999999996 578888653210                                           


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCc-cEEEEe--CCCcEEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSS-AAIINL--GDSTIIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~--~~g~~~~a~~vV~A  161 (232)
                                             ..+.+.|.+.  +++++.++.|+.+..++   .. .+.+..  .+++++.||.|+.+
T Consensus       355 -----------------------~~l~~~L~~~--GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va  406 (985)
T TIGR01372       355 -----------------------PEARAEAREL--GIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVS  406 (985)
T ss_pred             -----------------------HHHHHHHHHc--CCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEc
Confidence                                   0022334332  78999999999987542   22 133332  24468999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      .|...+
T Consensus       407 ~G~~Pn  412 (985)
T TIGR01372       407 GGWTPV  412 (985)
T ss_pred             CCcCch
Confidence            998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.33  E-value=0.00071  Score=53.89  Aligned_cols=52  Identities=15%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC--chhhhhhhcCC
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV--HSMVAQWLGLS  175 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~--~S~~r~~~~~~  175 (232)
                      |+.++-+..|.++....  ++  +.+.+.||.++..|+||+|.|.  +|.+.+.-|++
T Consensus       407 GV~V~pna~v~sv~~~~--~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe  460 (659)
T KOG1346|consen  407 GVDVRPNAKVESVRKCC--KN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE  460 (659)
T ss_pred             Cceeccchhhhhhhhhc--cc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence            78999999999998764  34  8889999999999999999996  45555544443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.27  E-value=0.00052  Score=56.78  Aligned_cols=38  Identities=37%  Similarity=0.734  Sum_probs=34.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.+....|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus         1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            55556899999999999999999999999999999875

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.26  E-value=0.0053  Score=51.16  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ..|+|||+|..|+-+|..+.+.|. +|++++..+
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            579999999999999998888886 677666443

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.21  E-value=0.0014  Score=55.20  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|||+|.+|+=.|..|++...+|.+.-|...
T Consensus       184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             SEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            6899999999999999999999899998888754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.18  E-value=0.0082  Score=54.13  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..+.|.|.+|+++.+.+
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            579999999999999999999999999998764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.17  E-value=0.0004  Score=50.10  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|-.|+.+|..||++|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            599999999999999999999999999998864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.17  E-value=0.01  Score=51.55  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999986 699988764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.16  E-value=0.0006  Score=56.56  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .|+|||.|++|+++|..|+++|++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.15  E-value=0.0043  Score=53.06  Aligned_cols=116  Identities=18%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      .+..++|||.|++|..+...+.+   .-++++++-..+.+...-                               +....
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R-------------------------------i~Ls~   50 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR-------------------------------ILLSS   50 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc-------------------------------eeecc
Confidence            34689999999999999998887   346888886655442110                               00000


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      ...+..            .....++.+   .++..+.  +++++.+.+|+.+..++      -.|.+.+|.++.+|-+|+
T Consensus        51 vl~~~~------------~~edi~l~~---~dwy~~~--~i~L~~~~~v~~idr~~------k~V~t~~g~~~~YDkLil  107 (793)
T COG1251          51 VLAGEK------------TAEDISLNR---NDWYEEN--GITLYTGEKVIQIDRAN------KVVTTDAGRTVSYDKLII  107 (793)
T ss_pred             ccCCCc------------cHHHHhccc---hhhHHHc--CcEEEcCCeeEEeccCc------ceEEccCCcEeecceeEE
Confidence            000000            000001111   1223332  79999999999998764      447788999999999999


Q ss_pred             cCCCchhhhhhhc
Q 044609          161 CDGVHSMVAQWLG  173 (232)
Q Consensus       161 A~G~~S~~r~~~~  173 (232)
                      |+|....+-..-|
T Consensus       108 ATGS~pfi~PiPG  120 (793)
T COG1251         108 ATGSYPFILPIPG  120 (793)
T ss_pred             ecCccccccCCCC
Confidence            9999876544333

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.14  E-value=0.0012  Score=54.59  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.|..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            589999999999999999999999999998864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.14  E-value=0.00085  Score=52.64  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.11  E-value=0.0011  Score=46.22  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            8 VVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999865

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.09  E-value=0.00075  Score=52.93  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|+++|++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.08  E-value=0.012  Score=49.05  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ..|+|||+|..|+-+|..+.+.|. +|+|+++.+.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            589999999999999999999985 7999998653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.07  E-value=0.00095  Score=51.67  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|.|||+|..|..+|..|+++|++|+++|+++..
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~   38 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA   38 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence            6999999999999999999999999999987543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.06  E-value=0.00093  Score=51.99  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.05  E-value=0.00094  Score=55.74  Aligned_cols=33  Identities=39%  Similarity=0.634  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|.+|+.+|..|+++|.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.04  E-value=0.0011  Score=51.47  Aligned_cols=34  Identities=26%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|+++|++|.++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.02  E-value=0.012  Score=51.13  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||+|..|+-+|..|.+.|. +|+|+++..
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999987 599998765

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.01  E-value=0.013  Score=52.74  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-C-CcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL-G-IKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~-g-~~v~viE~~~   38 (232)
                      .+|+|||||.+|+-+|..+.+. | .+|+++.+.+
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            5899999999999999988887 5 4899999875

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.00  E-value=0.0011  Score=54.15  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |.+  ..|.|||.|..|+.+|..|+++|++|+.+|+++.
T Consensus         1 m~~--~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          1 MSF--ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             CCc--cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            664  4699999999999999999999999999998764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.94  E-value=0.0015  Score=51.10  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            369999999999999999999999999999964

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.92  E-value=0.0022  Score=50.54  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=34.2

Q ss_pred             CCccc-ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609            1 MEMVE-EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~   40 (232)
                      |+|.+ .+|+|||+|..|.++|..++..|+ +++++|.++..
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            55533 689999999999999999999996 89999987754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.91  E-value=0.0014  Score=50.98  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.90  E-value=0.0021  Score=54.85  Aligned_cols=105  Identities=24%  Similarity=0.351  Sum_probs=72.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      .-+|||||.-|+-+|..|.+.|.++.+++=.+.+             ++  ++|                     +    
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l-------------Me--rQL---------------------D----  186 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL-------------ME--RQL---------------------D----  186 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhCCCceEEEeecchH-------------HH--Hhh---------------------h----
Confidence            4689999999999999999999999999854422             00  000                     0    


Q ss_pred             eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609           87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                                        -.-..+++...+.. +++++.+...+.+...   +.. ..+.++||..+.||+||-|+|...
T Consensus       187 ------------------~~ag~lL~~~le~~-Gi~~~l~~~t~ei~g~---~~~-~~vr~~DG~~i~ad~VV~a~GIrP  243 (793)
T COG1251         187 ------------------RTAGRLLRRKLEDL-GIKVLLEKNTEEIVGE---DKV-EGVRFADGTEIPADLVVMAVGIRP  243 (793)
T ss_pred             ------------------hHHHHHHHHHHHhh-cceeecccchhhhhcC---cce-eeEeecCCCcccceeEEEeccccc
Confidence                              01122333333321 7788888777766653   344 889999999999999999999865


Q ss_pred             --hhhhhhcC
Q 044609          167 --MVAQWLGL  174 (232)
Q Consensus       167 --~~r~~~~~  174 (232)
                        .+.+..|+
T Consensus       244 n~ela~~aGl  253 (793)
T COG1251         244 NDELAKEAGL  253 (793)
T ss_pred             ccHhHHhcCc
Confidence              45555554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.87  E-value=0.0017  Score=50.47  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998764

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.0025  Score=49.99  Aligned_cols=40  Identities=30%  Similarity=0.385  Sum_probs=36.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG   44 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~   44 (232)
                      .|||+|+|-|+.=+.++..|+..|.+|+.||+++.-+...
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~   45 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS   45 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence            5999999999999999999999999999999998765443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.83  E-value=0.0022  Score=44.96  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLE   35 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE   35 (232)
                      ...|+|||||..|...|..|.+.|.+|+||.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            3689999999999999999999999999995

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.79  E-value=0.0031  Score=49.54  Aligned_cols=39  Identities=28%  Similarity=0.487  Sum_probs=33.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      |+....+|+|||+|-.|.++|+.|+..++  ++.++|....
T Consensus         2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            45556899999999999999999999988  7999998654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.78  E-value=0.0025  Score=50.06  Aligned_cols=38  Identities=29%  Similarity=0.615  Sum_probs=32.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+.. .+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus         1 ~~~~-~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          1 MNPI-QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             CCCc-cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5543 4799999999999999999999999999998653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.77  E-value=0.0027  Score=46.41  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999999 699999873

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.77  E-value=0.0024  Score=43.61  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +..|+|+|+|-.|..+|..|++.|+ +++|+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999999 799999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.72  E-value=0.0014  Score=42.47  Aligned_cols=35  Identities=23%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ....|+|||||..|..-+..|.+.|.+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            45789999999999999999999999999998764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.71  E-value=0.0027  Score=49.61  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+|||+|..|..+|..|++.|++|++++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            49999999999999999999999999999854

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.68  E-value=0.0029  Score=49.51  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|+|+|+|..|.++|..|++.|++|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            499999999999999999999999999998

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.68  E-value=0.0035  Score=46.02  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|||||.+|...+..|.+.|.+|+|+.+..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3689999999999999999999999999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.67  E-value=0.0032  Score=46.09  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3468999999999999999999999999999864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.0041  Score=51.47  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |++....|+|+|.|.+|+++|..|+++|.+|++.|..+.+
T Consensus         1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            6666678999999999999999999999999999976543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.64  E-value=0.0032  Score=52.69  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |.+ -.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         1 ~~~-i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          1 MTM-IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CCC-cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            443 24799999999999999999999999999998654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.64  E-value=0.0034  Score=48.94  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|.++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998754

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.64  E-value=0.0034  Score=50.00  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|.|||+|..|...|..|++.|++|++++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            5999999999999999999999999999985

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.64  E-value=0.032  Score=50.52  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL-GI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~-g~-~v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            5899999999999999998886 75 799999865

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.63  E-value=0.011  Score=48.18  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ++.+..+++|+++....      -.+.+.+| .+.+|.+|+|+|....
T Consensus        67 ~i~~~~~~~v~~id~~~------~~v~~~~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          67 GIDVRTGTEVTSIDPEN------KVVLLDDG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             CCEEeeCCEEEEecCCC------CEEEECCC-cccccEEEEcCCCccc
Confidence            78899999999997663      34566777 7899999999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.59  E-value=0.004  Score=41.13  Aligned_cols=32  Identities=38%  Similarity=0.553  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.59  E-value=0.0036  Score=52.51  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6799999999999999999999999999998865

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.59  E-value=0.0032  Score=49.98  Aligned_cols=33  Identities=27%  Similarity=0.602  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|-+||+.|..|++.|++|+.+|.++.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            599999999999999999999999999998864

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.57  E-value=0.0047  Score=48.95  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|++.|++|++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999964

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.56  E-value=0.0048  Score=47.11  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4689999999999999999999996 8999997754

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.53  E-value=0.0046  Score=48.47  Aligned_cols=33  Identities=33%  Similarity=0.548  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+|.+|.++|+.|+++|+  ++.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            59999999999999999999994  7999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.53  E-value=0.0052  Score=48.22  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...+|.|||+|..|.++|..|++.|++|.+++|...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            345799999999999999999999999999998764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.52  E-value=0.0054  Score=47.99  Aligned_cols=33  Identities=30%  Similarity=0.573  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|+.+|+ +|+++|..+.
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            69999999999999999999887 8999998554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.49  E-value=0.028  Score=45.26  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+..|+|+|.|.+|.++...|-..-++|+++..+..
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny   89 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY   89 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence            357899999999999999999888899999986543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.49  E-value=0.0078  Score=41.08  Aligned_cols=34  Identities=38%  Similarity=0.535  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      ...|+|||+|-+|.+++..|++.|.+ ++|+.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            46899999999999999999999987 99999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.45  E-value=0.016  Score=46.50  Aligned_cols=131  Identities=21%  Similarity=0.238  Sum_probs=76.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHH--hhccCceeeEEEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRR--LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT--SVYAPAKRVFVTN   80 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~--~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~   80 (232)
                      +...+|||+|.+-.+++.....  .+.+|++|-..+....-      .|.         +...+.  ..-.+.....+..
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYm------RPP---------LSKELW~~~dpn~~k~lrfkq  242 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYM------RPP---------LSKELWWYGDPNSAKKLRFKQ  242 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCccc------CCC---------cchhceecCCCChhhheeecc
Confidence            3568999999987776665544  36788888655443110      000         000000  0111112222222


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                       .++....+-|       .+..+++++.+|-+...   .|+-+..+.+|..+..++      -.|.+.||.++.+|-.++
T Consensus       243 -wsGkeRsiff-------epd~FfvspeDLp~~~n---GGvAvl~G~kvvkid~~d------~~V~LnDG~~I~YdkcLI  305 (659)
T KOG1346|consen  243 -WSGKERSIFF-------EPDGFFVSPEDLPKAVN---GGVAVLRGRKVVKIDEED------KKVILNDGTTIGYDKCLI  305 (659)
T ss_pred             -cCCccceeEe-------cCCcceeChhHCccccc---CceEEEeccceEEeeccc------CeEEecCCcEeehhheee
Confidence             1233333333       33455677666554332   267899999999997664      347789999999999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       306 ATG~~Pk  312 (659)
T KOG1346|consen  306 ATGVRPK  312 (659)
T ss_pred             ecCcCcc
Confidence            9998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.0058  Score=50.57  Aligned_cols=38  Identities=26%  Similarity=0.414  Sum_probs=33.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |......|+|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus         1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            55545679999999999999999999999999999765

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.43  E-value=0.0054  Score=48.53  Aligned_cols=32  Identities=31%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|++.|++|.++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            49999999999999999999999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.43  E-value=0.053  Score=49.51  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      .+|+|||||..|+=+|..+.|.|.+ |+++.+..
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~  605 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS  605 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            5899999999999999999999985 67777543

>PRK13984 putative oxidoreductase; Provisional

Probab=96.43  E-value=0.038  Score=47.67  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=24.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC------cEEEEe
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI------KALVLE   35 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~------~v~viE   35 (232)
                      .+|+|||||..|+=+|..|++.+.      +|+++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999998753      566653

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.40  E-value=0.0061  Score=48.36  Aligned_cols=34  Identities=44%  Similarity=0.629  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 899999875

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.38  E-value=0.0054  Score=51.37  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+.+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            57999999999999999999999999999988643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.37  E-value=0.0077  Score=42.54  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.+||.|..|..+|..|.++|++|.++|+.+.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            799999999999999999999999999998753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.37  E-value=0.0095  Score=40.97  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=29.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+ |..|.++|+.|...++  ++.++|..+.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            6999999 9999999999999875  7999998754

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.36  E-value=0.0055  Score=41.79  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            8 VVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++|+|+|+.+.++|..++..|++|+++|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.34  E-value=0.0095  Score=42.22  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|||+|- +|..+|..|.++|.+|+++.|..
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            47899999996 69999999999999999999863

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK04148 hypothetical protein; Provisional

Probab=96.32  E-value=0.0044  Score=41.87  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.31  E-value=0.009  Score=42.44  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|.+|..+|..|.+.|.+|+++|...
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            689999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.30  E-value=0.0055  Score=50.15  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.27  E-value=0.0069  Score=48.75  Aligned_cols=33  Identities=33%  Similarity=0.500  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|+|+|.+|+.+|..|.+.|.+|+++|+.+
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.25  E-value=0.0093  Score=43.73  Aligned_cols=34  Identities=29%  Similarity=0.520  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            4689999999999999999999998 899999864

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.25  E-value=0.0099  Score=42.48  Aligned_cols=32  Identities=34%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 599999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.23  E-value=0.009  Score=47.44  Aligned_cols=34  Identities=41%  Similarity=0.640  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4689999999999999999999999 899999874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.23  E-value=0.0078  Score=47.55  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|..+|..|++.|++|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.0028  Score=50.21  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA   45 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~   45 (232)
                      .+|||+|+|-|..=+.++..|+..|.+|+.+||++.-+....
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa   44 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA   44 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence            459999999999999999999999999999999987654443

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.0078  Score=47.99  Aligned_cols=46  Identities=33%  Similarity=0.417  Sum_probs=41.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeec
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS   50 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~   50 (232)
                      +|||+|||-|..=..+|.+.+|.|.+|+-+|+++..+.....+.+.
T Consensus         8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            5999999999999999999999999999999999887766666554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.18  E-value=0.0069  Score=46.82  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||.|..|.++|..|.++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.17  E-value=0.011  Score=44.64  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ..+|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            3689999999999999999999998 7889998754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.14  E-value=0.012  Score=40.54  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999998 7999997753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.13  E-value=0.11  Score=45.31  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|+|||+|..|+-+|..+.+.|. +|+++++.+.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            589999999999999998888885 7999987643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.12  E-value=0.01  Score=48.29  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|+.|+.+|..+...|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            5899999999999999999999999999998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.11  E-value=0.012  Score=46.25  Aligned_cols=33  Identities=27%  Similarity=0.441  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      +|+|||+|..|..+|..++..|+ ++.++|..+.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            79999999999999999999876 9999998654

>PLN02602 lactate dehydrogenase

Probab=96.10  E-value=0.013  Score=46.60  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      .+|+|||+|-.|.++|+.|+.+++  ++.|+|....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            699999999999999999998876  6999998654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.08  E-value=0.013  Score=43.21  Aligned_cols=34  Identities=35%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4689999999999999999999999 499999864

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.07  E-value=0.013  Score=44.43  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +.+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4689999999999999999999998 789999774

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.06  E-value=0.0091  Score=49.83  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..+|+|+|+|++|+.++..+...|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998754

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.03  E-value=0.013  Score=46.02  Aligned_cols=33  Identities=36%  Similarity=0.563  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|+|||+|-+|.++|+.|+.+|+  ++.++|+.+.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            59999999999999999999984  7999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.99  E-value=0.01  Score=51.96  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..+++.|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998764

>PRK08328 hypothetical protein; Provisional

Probab=95.98  E-value=0.014  Score=43.69  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4689999999999999999999998 6889987653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.96  E-value=0.012  Score=46.06  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            8 VVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      |.|||+|.+|..+|..|+.+++ +|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            5899999999999999999877 9999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=95.96  E-value=0.012  Score=45.68  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||||..|...|..++..|++|+++|.+..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            5799999999999999999997899999999853

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.95  E-value=0.015  Score=43.54  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4689999999999999999999998 788998775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.95  E-value=0.012  Score=46.18  Aligned_cols=38  Identities=34%  Similarity=0.562  Sum_probs=31.7

Q ss_pred             CCccc-ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            1 MEMVE-EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      |+.+. .+|.|||+|..|.++|..|.+.|.  +|.++++.+
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            44333 579999999999999999999885  899999864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.94  E-value=0.015  Score=49.55  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -.|+|+|+|..|..+|..|.++|++++++|+++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            5789999999999999999999999999999864

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.94  E-value=0.011  Score=51.68  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||||..|...|..+++.|++|+++|.+...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999987643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.91  E-value=0.018  Score=45.22  Aligned_cols=35  Identities=20%  Similarity=0.537  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +.+|.|||+|-.|.++|+.|+..++  ++.|+|..+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4589999999999999999999876  6899998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.90  E-value=0.0098  Score=43.61  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||||..|.-.|-..+..|+.|.++|++..
T Consensus        12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            6899999999999999999999999999999864

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.89  E-value=0.016  Score=43.10  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.||| +|..|.++|..|++.|++|.+++|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            499997 79999999999999999999998865

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.84  E-value=0.021  Score=41.77  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|.|-.|..+|..|.+.|.+|++.|+++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999998763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.83  E-value=0.0079  Score=45.16  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=27.2

Q ss_pred             EEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609            8 VVIIGAGIAGLATAVALRRL--GIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~   39 (232)
                      .+|||||+||.+||-.|+..  ..+|+++-..+.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            68999999999999999985  458888877654

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.81  E-value=0.019  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|..|+..|..|++.|+ +++++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4689999999999999999999999 588999774

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.79  E-value=0.019  Score=42.93  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999998 889999775

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.79  E-value=0.02  Score=41.80  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4689999999999999999999998 589999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.78  E-value=0.022  Score=44.98  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      ..+|+|||+|..|.++|..|+..| .++.++|.++.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            468999999999999999999998 58999998764

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.77  E-value=0.014  Score=47.35  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|.|||.|..|+.+|..++. |++|+++|+++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            49999999999999988885 9999999998653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.76  E-value=0.015  Score=45.57  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|+|+|..|...|+.|++.|.+|+++-|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            599999999999999999999988888888764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=95.76  E-value=0.012  Score=51.62  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..++..|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.74  E-value=0.23  Score=41.68  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL   27 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~   27 (232)
                      .+|+|||+|..|+-+|..|.+.
T Consensus       167 k~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        167 DTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            5799999999999999999876

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.74  E-value=0.015  Score=43.78  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-----------CcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-----------IKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-----------~~v~viE~~~~   39 (232)
                      +..+|+|||+|-.|+.++..|++.|           .+++|+|.+.-
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4579999999999999999999974           38999998753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.74  E-value=0.019  Score=44.51  Aligned_cols=33  Identities=42%  Similarity=0.571  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|+|+|-+|.++|..|++.|. +|+|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999998 799999874

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.74  E-value=0.021  Score=44.78  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+|..|.++|+.|..+++  ++.|+|....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            48999999999999999999887  6999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.73  E-value=0.014  Score=45.44  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            488999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.017  Score=47.84  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             CCccc-ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVE-EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+.+. ..|+|+|.|.+|.++|..|.+ |.+|++.|..+
T Consensus         1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            44433 689999999999999999995 99999999653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.69  E-value=0.022  Score=42.50  Aligned_cols=34  Identities=41%  Similarity=0.547  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIK---ALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~---v~viE~~~   38 (232)
                      ..+|+|+|+|-+|...|..|.+.|.+   +.+++|..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            36899999999999999999999985   99999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.67  E-value=0.096  Score=42.07  Aligned_cols=44  Identities=14%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEecCCCch
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIGCDGVHS  166 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~A~G~~S  166 (232)
                      .+.++.+++|.+++...+ |.  +.+.+..   +  .+++.|.||+|||-.-
T Consensus       292 ~v~l~~~~ev~~~~~~G~-g~--~~l~~~~~~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         292 DVRLLSLSEVQSVEPAGD-GR--YRLTLRHHETGELETVETDAVILATGYRR  340 (436)
T ss_pred             CeeeccccceeeeecCCC-ce--EEEEEeeccCCCceEEEeeEEEEeccccc
Confidence            578999999999988753 32  5555432   2  4889999999999874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.64  E-value=0.026  Score=42.34  Aligned_cols=39  Identities=23%  Similarity=0.356  Sum_probs=34.2

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|+...|+|.|| |..|..+|..|+++|++|+++.|++.
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            6666678999997 89999999999999999999998754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.62  E-value=0.019  Score=47.72  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~   39 (232)
                      +|.|||.|-.|+.+|..|+++  |++|+.+|.++.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            599999999999999999998  478999998764

>PRK08223 hypothetical protein; Validated

Probab=95.62  E-value=0.024  Score=43.67  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|..+|..|++.|+ ++.++|.+..
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            4689999999999999999999998 7889997753

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=95.60  E-value=0.026  Score=42.69  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...++|+|+|+.+..+|..+...|++|+++|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.59  E-value=0.024  Score=45.58  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      +|+|||+|-.|.+.|..|++++ .+|++.+|...
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            7999999999999999999999 89999999843

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.59  E-value=0.02  Score=44.61  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|..|..+|..|++.|++|.++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.57  E-value=0.022  Score=47.92  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|.|+|.|-+|+++|..|.++|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3579999999999999999999999999999754

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.56  E-value=0.025  Score=44.12  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|+|.|.+|..+|..|.+.|.+|+++++.+
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.55  E-value=0.022  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|.|.+|+++|..|.+.|++|++.|+.+.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4799999999999999999999999999997653

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.53  E-value=0.023  Score=44.37  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.53  E-value=0.023  Score=39.75  Aligned_cols=33  Identities=42%  Similarity=0.540  Sum_probs=27.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..++|+|-|..|..+|..|...|.+|+|.|.++
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            579999999999999999999999999999976

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.53  E-value=0.027  Score=35.74  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CcEEEE-ecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG---IKALVL-EKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g---~~v~vi-E~~~~   39 (232)
                      +|.|||+|-.|.+++..|.+.|   .+|.++ +|++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            4789999999999999999999   889866 77653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.53  E-value=0.024  Score=45.96  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|+|.|+.|..+|..+...|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            35899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.51  E-value=0.023  Score=46.70  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|||-|.+|.++|..|.++|.+|...|+...
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999997653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.50  E-value=0.032  Score=48.06  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|.|..|..+|..|.++|++++++|+++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS  434 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence            5799999999999999999999999999999864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.49  E-value=0.021  Score=47.33  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            599999999999999999999999999998654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.49  E-value=0.018  Score=50.54  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            47999999999999999999 88999999998653

>PLN02240 UDP-glucose 4-epimerase

Probab=95.49  E-value=0.033  Score=44.43  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |+++...|+|.|| |..|..++..|.++|++|+++++.
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6777788999997 999999999999999999999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.021  Score=47.84  Aligned_cols=33  Identities=33%  Similarity=0.577  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|.|.+|++++..|.++|.+|++.|+.+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999653

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.44  E-value=0.038  Score=40.21  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=29.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ...++|+|| |..|..+|..|++.|.+|.++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999997 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=95.43  E-value=0.021  Score=49.99  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999998 58999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		3e-05
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		4e-04

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 7/205 (3%)
Query: 25  RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
           ++ GI   V E    ++  GAA+++ PN    +  LG+   + +   P +R+   +  +G
Sbjct: 43  KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102
Query: 85  ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
               + S A    R GS    V R              ++QF  ++   +      +   
Sbjct: 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEED----ADGV 158
Query: 144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSVRGLAVFPHGHGLNQDI 201
            +   D +     +LI  DG HS +  W LG + +   +G  +  GL             
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 218
Query: 202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
             FVG G +   +P++    Y+F +
Sbjct: 219 TTFVGEGKQVSLMPVSAGRFYFFFD 243

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 7/205 (3%)
Query: 25  RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG 84
           ++ GI   V E    ++  GAA+++ PN       LG      +   P +R    +  +G
Sbjct: 43  KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXETFGGPLRRXAYRDFRSG 102
Query: 85  ATQ-ELSYAGKSGRIGSGLRSVHRQSXXXXXXXXXXXXTIQFSSKIAAIDSQTLNGSSAA 143
               + S A    R GS    V R              ++QF  ++   +      +   
Sbjct: 103 ENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGKRVTRCEED----ADGV 158
Query: 144 IINLGDSTIIKAKVLIGCDGVHSMVAQW-LGLS-ESINSGRSSVRGLAVFPHGHGLNQDI 201
            +   D +     +LI  DG HS +  W LG + +   +G  +  GL             
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQW 218
Query: 202 RQFVGVGFRAGFIPLNDRDVYWFLN 226
             FVG G R    P++    Y+F +
Sbjct: 219 TTFVGEGKRVSLXPVSAGRFYFFFD 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	3e-49
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-37
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	1e-35
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	6e-34
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	9e-34
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-20
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-19
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-16
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	1e-15
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	4e-15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	1e-13
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	1e-13
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-13
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-13
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-12
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	2e-12
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-11
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	2e-11
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-10
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	3e-09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	5e-09
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	5e-09
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	1e-08
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	3e-08
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	3e-08
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	5e-08
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	5e-08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	5e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	6e-08
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	6e-08
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	9e-08
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-07
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	1e-07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	2e-07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	3e-07
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	3e-07
3dme_A	369	Conserved exported protein; structural genomics, P	4e-07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-07
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-07
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	4e-07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	5e-07
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	5e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	5e-07
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	6e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	7e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	7e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	9e-07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	1e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	1e-06
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-06
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-06
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	3e-06
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-06
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-06
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-06
4fk1_A	304	Putative thioredoxin reductase; structural genomic	5e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	7e-06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	8e-06
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	1e-05
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	1e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-05
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-05
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	2e-05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	2e-05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	2e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	2e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	2e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	3e-05
2bry_A	497	NEDD9 interacting protein with calponin homology a	4e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	5e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	6e-05
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	6e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	6e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	6e-05
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	8e-05
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	8e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	1e-04
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	1e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-04
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	2e-04
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	2e-04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	2e-04
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	3e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	3e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	3e-04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	3e-04
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	3e-04
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	4e-04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	4e-04
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	5e-04
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	5e-04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	5e-04
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	5e-04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	6e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	6e-04
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	6e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-04
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	6e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	7e-04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	8e-04
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	8e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  165 bits (419), Expect = 3e-49
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 7/228 (3%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
             ++IGAGI GL+ AVAL++ GI   V E    ++  GAA+++ PN    +  LG+   +
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIM 84

Query: 67  TSVYAPAKRVFVTNLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
            +   P +R+   +  +G    + S A    R GS    V R  L   + D    D++QF
Sbjct: 85  ETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQF 144

Query: 126 SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL--GLSESINSGRS 183
             ++   +      +    +   D +     +LI  DG HS +  W+     +   +G  
Sbjct: 145 GKRVTRCE----EDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYV 200

Query: 184 SVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPP 231
           +  GL               FVG G +   +P++    Y+F +   P 
Sbjct: 201 NWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPA 248

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  133 bits (336), Expect = 3e-37
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 23/227 (10%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLT 67
             + G G AGL  A+AL++ G    + EKS  LRA GA + L  N    L+ LG    + 
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVL 73

Query: 68  SVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF-- 125
                             ++E          G   R + R  L +AL +      +    
Sbjct: 74  QGSHTPPTYETWMHNKSVSKETFN-------GLPWRIMTRSHLHDALVNRARALGVDISV 126

Query: 126 SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSES-INSGRSS 184
           +S+  A D           + L    +++A +++G DGV S V   +G  +    S    
Sbjct: 127 NSEAVAAD-------PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGL 179

Query: 185 VRGL------AVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225
           +R +       +         D+  F     R  + P N+ ++Y  L
Sbjct: 180 IRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGL 226

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  129 bits (326), Expect = 1e-35
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 17/239 (7%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK--SDGLRATGAALTLSP-NAWLAL 57
             + +++V IIG G  GL  A  L++ GI   V E+      R  G  L L   +   A+
Sbjct: 22  NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAM 81

Query: 58  DALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADE 117
              G+      +  P         G   + +        R  +    ++R  L   L + 
Sbjct: 82  KKAGLLQTYYDLALPMGVNIADEKGNILSTK--NVKPENRFDN--PEINRNDLRAILLNS 137

Query: 118 LPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSES 177
           L +DT+ +  K+  ++     G     +   +     A ++I  +G  S V +++  +E 
Sbjct: 138 LENDTVIWDRKLVMLE----PGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEV 193

Query: 178 INSGRSSVRGL-----AVFPHGHGLNQDIRQFV-GVGFRAGFIPLNDRDVYWFLNRYSP 230
             +G  +++          P    L    R      G      P N+  +++ ++  +P
Sbjct: 194 EETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTP 252

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  124 bits (314), Expect = 6e-34
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKS-DGLRATGAALTLSPNAWLALDALGVSHKL 66
           + ++G  I+GL  A+ LR  G+   V E+S   L   G  + + P     L   GV    
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 67

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFS 126
            SV + +        G    + +      G + +  R     S+   L +    +    S
Sbjct: 68  ISVPSSSMEYVDALTG----ERV------GSVPADWRFTSYDSIYGGLYELFGPERYHTS 117

Query: 127 SKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172
             +  +       S    +   D T  +A  +IG DG  S+V + L
Sbjct: 118 KCLVGLS----QDSETVQMRFSDGTKAEANWVIGADGGASVVRKRL 159

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  124 bits (313), Expect = 9e-34
 Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 17/240 (7%)

Query: 7   DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           D++I GAGI GL+ A+AL + GI K  +LE S  +R  G  + + P A  AL  LG+   
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHR----QSLLEALADELPDD 121
           L +   P   +   +  +GAT      G          S+HR      LL A+ + L   
Sbjct: 66  LAATAIPTHELRYID-QSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ 124

Query: 122 TIQFSSKIAAIDSQTLNGSSAAIIN-LGDSTIIKAKVLIGCDGVHSMVAQWL--GLSESI 178
            ++    +  I+ +          +  G    + A VL+G DG+HS V   L        
Sbjct: 125 AVRTGLGVERIE-ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLS 183

Query: 179 NSGRSSVRGLA---VFPHGHGL----NQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPP 231
           + G +  RG+     F  G  +    ++   + V     A         V W     S  
Sbjct: 184 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAA 243

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 7/175 (4%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
           M     DV+I G GI G   A  L R G + +V+E++   RA   A  L P     ++A 
Sbjct: 2   MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA 61

Query: 61  GVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGL---RSVHRQSLLEALADE 117
           G+  ++T      +            +  +Y+    R G  +       R+ +LE +  E
Sbjct: 62  GLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDAR-GYFILMPCESLRRLVLEKIDGE 120

Query: 118 LPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172
                + F ++I A+  +    +    + L D  +++ +V++G DG+ S V + L
Sbjct: 121 -ATVEMLFETRIEAV-QRDERHAIDQ-VRLNDGRVLRPRVVVGADGIASYVRRRL 172

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 83.3 bits (206), Expect = 7e-19
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-GAALTLSPNAWLALDA 59
           M+  + DV++IGAG AG   A  + + G K  ++EK    R   G +L   P     LD 
Sbjct: 1   MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLL--PRCMEHLDE 58

Query: 60  LGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP 119
            G    + +     K       G     + +++ +     +    V R +  + LADE  
Sbjct: 59  AGFLDAVKAQGFQQKFGAKFVRG-KEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAA 117

Query: 120 DD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL--- 174
                +++   +  I     +  +      G+   I+A+ +I   G   ++ +  GL   
Sbjct: 118 RQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKP 177

Query: 175 --SESINSGRSSVRGLAVFPHGH-GLNQDIRQFVGVGFRAGFIPLNDRDV 221
              ES  +  + ++ +          N+              IP ++ + 
Sbjct: 178 SGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNT 227

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 14/199 (7%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-GAALTLSPNAWLALDAL 60
            M    V IIG G AG    + L +LG    + E+S   R   G   +L P     L+ L
Sbjct: 20  HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE--SLLPGTMSILNRL 77

Query: 61  GVSHKLTSVYAPAKR----VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALAD 116
           G+  K+ +     K     ++  +         +           +  V R+   + L D
Sbjct: 78  GLQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAV-QVKREEFDKLLLD 136

Query: 117 ELPDD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL 174
           E      T+   + +  +D    +     +   G+S  +++  +I   G    +++ LG+
Sbjct: 137 EARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGV 196

Query: 175 SESINSGRSSVRGLAVFPH 193
            +         R  AV+ +
Sbjct: 197 RQY----DEFYRNFAVWSY 211

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 21/233 (9%)

Query: 1   MEMVEE--DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-GAALTLSPNAWLAL 57
           M    E  D+++IG G  G   A  +   G + L+LE+    R   G +L L        
Sbjct: 1   MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESL-LPATVHGIC 59

Query: 58  DALGVSHKLTSVYAPAKR--VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALA 115
             LG++ ++     P KR   F                     G     V R    + L 
Sbjct: 60  AMLGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAY-QVERARFDDMLL 118

Query: 116 DELPDD--TIQFSSKIAAIDSQTLNGSSAAIINL-GDSTIIKAKVLIGCDGVHSMVAQWL 172
                    ++   ++  +  +          N  G   +  A+ ++   G  + V+Q +
Sbjct: 119 RNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAV 178

Query: 173 GLSESINSGRSSVRGLAVF-------PHGHGLNQDIRQFVGVGFRAGFIPLND 218
           G            + +A++               +I           +IPL+D
Sbjct: 179 GERVY----SRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSD 227

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 33/259 (12%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL 60
           M   E DV+++GAG+ GL+TA+ L R G++ LV+E+  GL     A   +P     L   
Sbjct: 1   MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG 60

Query: 61  GVSHKLT---SVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHR--------QS 109
           GV+ ++     +        +    +   + L    +S                    Q 
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQD 120

Query: 110 LLEAL----ADELPDDTIQFSSKIAAI---DSQTLNGSSAAIINLGDSTIIKAKVLIGCD 162
            LE +    A +     I+F +++ +    D     G +A +        ++A  L+G D
Sbjct: 121 KLEPILLAQARKHGGA-IRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGAD 179

Query: 163 GVHSMVAQWLGL--------SESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGF 213
           G  S+V + LG+        +  +     + + G+                    F+  F
Sbjct: 180 GNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTG-----WYYLHHPEFKGTF 234

Query: 214 IPLNDRDVYWFLNRYSPPK 232
            P +  D +     Y P +
Sbjct: 235 GPTDRPDRHTLFVEYDPDE 253

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 11/178 (6%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           DV+I+G G  G+A A+ L    +  LV+E++DG        T+ P +       GV+ ++
Sbjct: 28  DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQI 87

Query: 67  ----TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHR----QSLLEALADEL 118
                    P    +VT +G      +       R              Q  L  L  E 
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEA 147

Query: 119 PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI--IKAKVLIGCDGVHSMVAQWLGL 174
             + ++  S++ + + Q  +   A I +L       + A+ L+ CDG  S   + LG+
Sbjct: 148 VGERLRTRSRLDSFE-QRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGI 204

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
           DVV++G G  GL  A  LR  G+ ALVLEK         A  L       LD  G+  + 
Sbjct: 51  DVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRF 110

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEAL----ADELPDDT 122
                  +           TQ L +     R          QS  EAL    A E   + 
Sbjct: 111 L---EGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLV--PQSRTEALLAEHAREAGAE- 164

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
           I    ++  +  Q        +        ++A+  +GCDG  S V +     
Sbjct: 165 IPRGHEVTRLR-QDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADR 216

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 15/173 (8%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
            V+++GAG AG+  A  LR  G++ +VLE+          L  +       D  G+  + 
Sbjct: 13  AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRF 72

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEAL----ADELPDDT 122
             V    +  F           + +    G   +       QS+ E      A  L  D 
Sbjct: 73  GEVETSTQGHF-------GGLPIDFGVLEGAWQAAKTV--PQSVTETHLEQWATGLGAD- 122

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
           I+   ++ ++      G +  +        ++A  L+GCDG  S V +  G  
Sbjct: 123 IRRGHEVLSLT-DDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFD 174

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 67.9 bits (165), Expect = 2e-13
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 29/223 (13%)

Query: 8   VVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNA-WLALDALGVSH 64
           +++IGAG AGL  A  L++        ++EK+D     G  + L         + L    
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDD--T 122
               +       F        +   +        G  L  V R+ L+ AL D+       
Sbjct: 63  APERLNPQFLEDFKLVHHNEPSLMST--------GVLLCGVERRGLVHALRDKCRSQGIA 114

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG-LSESINSG 181
           I+F S +                   +  +    +++  +GV+   A +   L   ++ G
Sbjct: 115 IRFESPLLEHG---------------ELPLADYDLVVLANGVNHKTAHFTEALVPQVDYG 159

Query: 182 RSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF 224
           R+             +N   R      F A     +D    + 
Sbjct: 160 RNKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFI 202

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 39/191 (20%)

Query: 3   MVEE--DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAALTLSPNAWLA 56
           M E   DV+IIG G AG + A  L R G+K L+++     R      G A++ +    L 
Sbjct: 2   MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLG 61

Query: 57  LD---ALGVSHKLTSV--YAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLL 111
           +       + +K+  +  Y+P  +   T  G G                    ++     
Sbjct: 62  MPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFE------------------LNAPLYN 103

Query: 112 EALAD-------ELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV 164
           + +         E+ D T      I   +   + G+        +   + +KV++   G 
Sbjct: 104 QRVLKEAQDRGVEIWDLT-TAMKPI--FEDGYVKGAVLFNRRTNEELTVYSKVVVEATGY 160

Query: 165 HSMVAQWLGLS 175
                  L   
Sbjct: 161 SRSFRSKLPPE 171

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 15/173 (8%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
            V+++GAG AGL  A  LR  G+  +VLE+          L  +       D  G+    
Sbjct: 14  SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAF 73

Query: 67  TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEAL----ADELPDDT 122
             V    +  F          E ++         G+++V  QS  E++    A     + 
Sbjct: 74  GPVETSTQGHFGGRPVDFGVLEGAHY--------GVKAVP-QSTTESVLEEWALGRGAE- 123

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLS 175
           +     + A+     +     +        +  + ++GCDG  S V +  G  
Sbjct: 124 LLRGHTVRALT-DEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFD 175

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 25/232 (10%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--ALTLSPNAWLALDALGVSH 64
            V IIGAG +GL     L + GI  ++LE+       G   A  L       L   GV  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSL----------LEAL 114
           ++       + V           E+++AG+  RI     S  +             L   
Sbjct: 64  RMARDGLVHEGV-----------EIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEA 112

Query: 115 ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGL 174
            +     T+  ++++   D              G+   +    + GCDG H +  Q +  
Sbjct: 113 REACGATTVYQAAEVRLHD-LQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPA 171

Query: 175 SESINSGRSS-VRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFL 225
                  R      L +      ++ ++         A     +     +++
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYV 223

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 39/247 (15%)

Query: 7   DVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           DV+I+G G AGL  A  L     I+  ++E+ +G    G A  ++       +A   +  
Sbjct: 34  DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS 93

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHR------------QSLLEA 113
           +      A  +           +     + GR+      +                 LE 
Sbjct: 94  IL---KEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLER 150

Query: 114 LADELPDDTIQFSSKIAAI--------DSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH 165
           + +        ++ ++  +           T+        + G    ++A+ ++GCDG  
Sbjct: 151 MRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGAR 210

Query: 166 SMVAQWLGLS---ESINS--GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGF---IPLN 217
           S V + +G     +S N   G   V  +  FP       D+R  V +    G    IP  
Sbjct: 211 SNVRRAIGRQLVGDSANQAWGVMDVLAVTDFP-------DVRYKVAIQSEQGNVLIIPRE 263

Query: 218 DRDVYWF 224
              +  F
Sbjct: 264 GGHLVRF 270

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39
          M   DVV+IG G +GL+    LRR G+  ++L+    
Sbjct: 1  MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS 37

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVV++GAGIAGL      R  G+     E + G+
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGV 56

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          D V+IGAG+ G+  A  + + G+K L +E  + +
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV 44

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DV+++GAG +GL     LR LG    V+E +  +
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 51

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          M    V IIGAG AG+  A+ L+  GI  +++ +  
Sbjct: 2  MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG 37

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
            V++GAG+ GL     L R G + +VLEKS 
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSD---GLRAT----------GA--ALTLSP 51
            V +IGAG++GLA A  L+  G+   V E      G   +          GA        
Sbjct: 15  RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEG 74

Query: 52  NAWLALDALGVSHKLTSVYAPAKRVFVTN 80
           +    +D+LG+  K     +  KR    N
Sbjct: 75  DVTFLIDSLGLREKQQFPLSQNKRYIARN 103

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 2   EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD---GLRAT----------GA--A 46
                +V ++G GI+GLA A  LR  G  A++LE S    G   T          G    
Sbjct: 13  RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF 72

Query: 47  LTLSPNAWLALDALGVSHKLTSVYAPAKRVFV 78
           L   P       AL +  ++ +    AKR +V
Sbjct: 73  LDREPATRALAAALNLEGRIRAADPAAKRRYV 104

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           VV++G G AGL +A  L++ G K  VLE   
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           VVI+GAG+AGL+ A  L   G +  VLE S+
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 1  MEMVEE-DVVIIGAGIAGLATAVALRRLGIKA-LVLEKSDGL 40
          M + ++  + IIGAG AGLA  + L + G     +LE++D +
Sbjct: 1  MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA 46
          D++IIG+G  G A      R G+  L+ +        G+ 
Sbjct: 4  DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH 43

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAALT-LSPNA 53
          + V+IG GI G A A  L +      + E    G R T AA   L  +A
Sbjct: 19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHA 67

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DV I+GAG +GLA A ALR+ G+   V+E  D
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          D +++G G +GL  A  L   G K L+LE  +
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DV+++GAG  G+A    L + G+K L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RAT 43
            V+IGAG+ GL +A  L + G +  V E+      R T
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-----ATG---AALT 48
             DVVIIG+G AGLA AV+ R  G K ++LEK          A G   AA T
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAET 177

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          M  + ++I+GAG +G      L   G +  ++++ D
Sbjct: 1  MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DVV++G G  GLATA  +   G + LVLE+       G 
Sbjct: 6  DVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGG 44

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DVV++G GI+G+A A  L   G+  +VLE  D
Sbjct: 6  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          D ++IGAG+ GLA A AL   G + LV E ++G+  TG 
Sbjct: 6  DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGI-GTGT 43

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLGIKA-LVLEKSD 38
          E++   +VIIGAG  GL  AV L  LG K   + E +D
Sbjct: 6  ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 7  DVVIIGAGIAGLATAVALRR-LGIKALVLEKSDGL 40
          D V+IGAG  G+     L   LG+  +  +K+DG 
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGP 44

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 7  DVVIIGAGIAGLATAVAL-----RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALG 61
          DV+I+GAG AGL  A  L     ++  +K  +++K       G A  L      +L  LG
Sbjct: 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 69

Query: 62 VSHKL 66
          ++ K+
Sbjct: 70 LADKI 74

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
              V+++GAG AG   ++A ++ G   ++++K
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDK 152

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-TGAA 46
          + + E D V+IGAG AG+  A+ + + G    +L K    R+ T +A
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSA 49

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          D +I+G+G+ G   A  L++L  K LV+EK +
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVV+ G GIAG+A ++   R G   LVLE++ G 
Sbjct: 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 48.2 bits (114), Expect = 7e-07
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           E    D +I+GAG AG   A  L   G + L++++  
Sbjct: 25 QESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 48.3 bits (114), Expect = 7e-07
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 7  DVVIIGAGIAGLATAVAL-RRLGIKALVLEKSD 38
          DV++IGAG  GL  A  L +  G   ++++ ++
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 5   EEDVVIIGAGIAGLATAVALRRLGIKALVLEK-----SDGLRATG---AALT 48
             DVV++G+G AG + A++    G K +++EK      +   A G   AA T
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWT 177

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-TGAA 46
          M++   D ++IG G+AGL  AVA ++ G+  +VL      R+ + AA
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAA 47

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 31/231 (13%), Positives = 60/231 (25%), Gaps = 26/231 (11%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEK--SDGLRATGAALTLSPNAWLALDALGVSHK 65
           + I+GAG AGL   + LR+  +   V      D         T++ NA      + +   
Sbjct: 25  IGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVN 84

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQF 125
                          +G             G + +  R+V  +     L   L     +F
Sbjct: 85  EWPSEEFGYFGHYYYVGGPQPMRF-----YGDLKAPSRAVDYRLYQPMLMRALEARGGKF 139

Query: 126 SSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSV 185
                + +               +    +  +L+ C G +++           +      
Sbjct: 140 CYDAVSAED-------------LEGLSEQYDLLVVCTGKYALGKV-FEKQSENSPFEKPQ 185

Query: 186 RGLAV-----FPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSPP 231
           R L V               +    G G       L+   +   L   +  
Sbjct: 186 RALCVGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHI 236

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 23/95 (24%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTL----------- 49
          M  + +VI+G GI GLA A    R    +   +LE  +  R  G   T            
Sbjct: 2  MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE--RLGGKVATYREDGFTIERGP 59

Query: 50 ------SPNAWLALDALGVSHKLTSVYAPAKRVFV 78
                       ++A+G+  KL  V     + F+
Sbjct: 60 DSYVARKHILTDLIEAIGLGEKL--VRNNTSQAFI 92

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKA-LVLEKSD 38
           V+++GAG++G++ A  L   GI   L+LE +D
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 38

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 7   DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH 64
           D+V+IGAG  G A A  LR+L  G   L++E+       GA + L+P  W    A  +  
Sbjct: 38  DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATI-LAPGVW---TAQDIPA 93

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAG 93
              +     +   +  LG+G T E+    
Sbjct: 94  GQEAQAEWTREQLLGALGSGKTLEVEDRP 122

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          ++V+IG GI G+  A  L + G +  V+EK 
Sbjct: 7  EIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRL------GIKALVLEKSD 38
          M   ++ VVIIG GI GLA A  + +        ++  ++E S 
Sbjct: 1  MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 1  MEMVEE-DVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38
          M + +   ++I+GAG  G +TA+ L R G     VL+   
Sbjct: 1  MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKA-LVLEKSD 38
          +   ++ V+IIGAGIAGL  A  L + GI+  LVLE  D
Sbjct: 4  VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD 42

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          DV++IG G  GL     L   G K L+LE  D
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD 72

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVAL--RRLGIKALVLEKSD-------GLRATGAALTLSP 51
            +    DV+I+GAG +GL+ A  +   R  +K  ++E S              +A+ +  
Sbjct: 61  DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK 120

Query: 52  NAWLALDALGVSHKLTSVYAPAKR--VFVTNLGTGATQE 88
            A L L  L + ++    Y   K   +F++ + +   Q 
Sbjct: 121 PAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQL 159

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          M+ +  D  +IGAG AGL  ++ L R   +  + + 
Sbjct: 4  MKYI--DCAVIGAGPAGLNASLVLGRARKQIALFDN 37

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
            V+IIG+G++GLA A  L+  G+   +LE  D
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 6  EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          + ++I+GAGIAGL     L R G    +LE + 
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 7  DVVIIGAGIAGLATAVALRRLG-----IKALVLEKSD------GLRATGAALTLSPNAWL 55
          D++ +G G + +A A+AL+        ++ L L+K            + + L +S    L
Sbjct: 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDL 91

Query: 56 A 56
           
Sbjct: 92 V 92

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           +    DV+I+G G+     +  L   G K LVL+++ 
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNP 53

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39
          DV+IIG   AGL+ A+ L R     L+++  + 
Sbjct: 4  DVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
            V+IIG+G++GLA A  L+  G+   +LE  D
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 3  MVEEDVVIIGAGIAGLATA-VALRRLGIKALVLEKSD 38
              D+ ++G+G  GL  A     +L  + LVLE+  
Sbjct: 5  TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKA--LVLEKSD 38
           VV++G GI+GLA +  L R       +++E S+
Sbjct: 4  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 29/117 (24%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRLGIKA--LVLEKS--------------------- 37
           M +  + VV+IGA   G   A   +RL  +A   +++++                     
Sbjct: 1   MSL--KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNI 58

Query: 38  DGLRATGAALTLSP---NAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSY 91
           + L+AT   +   P        ++AL V  +  ++   A  V + NL TG  + L Y
Sbjct: 59  ESLQATPYNVVRDPEFFRINKDVEAL-VETRAHAIDRAAHTVEIENLRTGERRTLKY 114

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLGIKA------LVLEKS 37
             E DVVI+GAG AGL+ A  L++L  +        ++EK+
Sbjct: 32 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 73

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-TGAA 46
          +   E D V++GAG AGL  A  L   G     + K    R+ T AA
Sbjct: 14 VVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAA 60

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG----LRATG 44
          M   ++DVVIIGAG AG+  A+   + G + LV++ +      +R +G
Sbjct: 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISG 70

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSD 38
           M   D V++GAG+ GLA A  L+       LV++   
Sbjct: 20 HMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSD 38
               E D+VI+GAG  GL+ A  L  L   ++  ++E   
Sbjct: 75  DAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKAL---VLEKSDGL 40
           V+I+GAG+ G   A  LRR     L   V +K+D  
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS 39

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSH 64
             +++GAG  GL  AV L  LG + +++EK     +    L L P     L ALG   
Sbjct: 94  KCLVVGAGPCGLRAAVELALLGARVVLVEKRIKF-SRHNVLHLWPFTIHDLRALGAKK 150

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA 46
          M   ++ VV++G+G+ GL++A+ L R G    +L +      +   
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQT 47

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG----LRATG 44
          + +IIGAG AGL  A  L +LG    V +        +  +G
Sbjct: 6  ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSG 47

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2  EMVEE-DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWL 55
           M EE DV+++G G+     +  +   G K L ++++      G + +++P   L
Sbjct: 2  HMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP--YYGGESSSITPLEEL 54

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          M     DV+I+GAG  GL     +   G+    ++   
Sbjct: 1  MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP 38

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          D ++IGAGIAG +T   L   G + +VLE+    
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQP 43

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVAL-RRLGIKALVLEKSD 38
          +   E DVV++GAG AGL+ A  + +   ++  ++E+S 
Sbjct: 35 ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRA-TGAA 46
          M+  + D+ I+GAG AGL  A+A  +     K  ++ K   +R+ T AA
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAA 49

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRL----GIKALVLEKSDGLRA-TGAA 46
          E+VE D++IIG G +G   A          G+K  ++EK+   R+   A 
Sbjct: 19 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQ 68

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 7  DVVIIGAGIAGLATAVAL-RRLGIK-ALVLEKS 37
          D +I+G G  GLATA  L +  GI    VLEK 
Sbjct: 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39
          DV+++G G +GL+ A+ L R G+K LVL+    
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLG 28
          ++    DVVI+GAG  G   A+ALR+ G
Sbjct: 5  VQAERADVVIVGAGHGGAQAAIALRQNG 32

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 22/105 (20%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD-------GL---------RATGAALTL 49
           V+++G   AG             A     E +D       G+               L  
Sbjct: 3   VIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFY 62

Query: 50  SPNAWLA---LDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSY 91
           S    L+    +   + H++T+V    K + V +L T   +  +Y
Sbjct: 63  SSPEELSNLGANVQ-MRHQVTNVDPETKTIKVKDLITNEEKTEAY 106

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 2  EMVEE-DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSP 51
           +  + DV+++G GI     +  L   G K L ++K D      A++TLS 
Sbjct: 7  TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQ 57

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG----LRATG 44
          DV++IG G +GL  A+     G   L+L+K +     L  +G
Sbjct: 28 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISG 69

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 3  MVEE----DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          M E+    D+ IIG G  GL TA           ++E   
Sbjct: 1  MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLP 40

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLE 35
          DVVI+G+G  G   A  L   G K  + +
Sbjct: 48 DVVIVGSGPIGCTYARELVGAGYKVAMFD 76

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNA 53
          VV+IGAG+ GL+TA+ +       L              LT +  A
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVA 48

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          +     DV+IIG+G AGL+ A+ L     + +VL K  
Sbjct: 4  LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 40

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD--------------GLRATGAALTLSP 51
           +V++G    G + A  LRRL  +   +++E+ +              G+      L +  
Sbjct: 39  IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQT 98

Query: 52  NAWLALDALGV----SHKLTSVYAPAKRVFVTNLGTGATQELSY 91
              ++     +      ++  +    K + + N+ T  T   +Y
Sbjct: 99  VERMS-KRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAY 141

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 21/104 (20%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD--------------GLRATGAALTLSP 51
           +V++GA   G   A  +RRL  ++  ++ EK                 +           
Sbjct: 4   IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYT 63

Query: 52  NAWLA----LDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSY 91
                    +      H++ ++    + V V N  T    E SY
Sbjct: 64  PEKFYDRKQITVK-TYHEVIAINDERQTVSVLNRKTNEQFEESY 106

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          DVVI+GAG AG + AV   R G    +L+K
Sbjct: 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK 47

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLG 28
          M    ++VVI+G G+AG+  A  LR  G
Sbjct: 1  MNA-NDNVVIVGTGLAGVEVAFGLRASG 27

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD--------------GLRATGAALTLSP 51
           ++IIG    G + A   RRL   A  ++ E+ +              G  A  +AL L  
Sbjct: 4   ILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQT 63

Query: 52  NAWLA----LDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSY 91
                    ++   V H++ ++   AK V V  L  G+  + SY
Sbjct: 64  PESFKARFNVEVR-VKHEVVAIDRAAKLVTVRRLLDGSEYQESY 106

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLG 28
          E ++  VV++GAG+A ++    LR+ G
Sbjct: 4  EALKAPVVVLGAGLASVSFVAELRQAG 30

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD--------------GLRATGAALTLSP 51
           V+++G+   G      L  L   A     EK D              G      ++    
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 52  NAWLA---LDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSY 91
              +    ++    + ++T++     +V V +L +G  +  +Y
Sbjct: 63  GEKMESRGVNVF-SNTEITAIQPKEHQVTVKDLVSGEERVENY 104

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)

Query: 4  VEEDVVIIGAGIAGLATAVALRRLGIKA------LVLEKSDGLR--ATGAAL 47
             D++++G G+     A    R   K       L+++K+   R  A    L
Sbjct: 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGL 72

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 1  MEMVEE-DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
           +  +  D+ IIG G  G+  A       I   ++E   
Sbjct: 9  TDHHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP 47

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKAL---VLEKSD-----------GLRATGAALTLSPNA 53
           V+++G     L  A  L+RL        V+ KS             +            +
Sbjct: 4   VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63

Query: 54  WLALDALGVSHKLTSVYA--PAKRVFVTNLGTGATQELSY 91
              L   G+  +  +V        +       G+  E  Y
Sbjct: 64  EA-LPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEY 102

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          + IIG+GIAGL+  VALRR G K  ++ K 
Sbjct: 2  IYIIGSGIAGLSAGVALRRAGKKVTLISKR 31

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKALVLEKSD---GL 40
           V +IGAG AGLA A  LR  G +  V ++ D   GL
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL 160

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          M+++  DV IIG G AG+    A ++   K +++E 
Sbjct: 4  MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEG 39

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 8   VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD--------------GLRATGAALTLSP 51
            VIIG   AG++ A+ + R    A  + LEK +              G  A+   L    
Sbjct: 39  YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARN 98

Query: 52  NAWLALDALGV----SHKLTSVYAPAKRVFVTNLGTGATQELSY 91
                 D  G+     H++T V    K V+  +  T    E SY
Sbjct: 99  VKTFR-DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.97
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.97
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.97
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.97
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.96
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.96
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.96
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.96
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.96
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.96
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.95
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.95
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.95
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.95
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.95
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.95
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.95
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.95
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.94
3atr_A	453	Conserved archaeal protein; saturating double bond	99.93
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.91
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.9
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.89
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.88
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.83
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.79
3dme_A	369	Conserved exported protein; structural genomics, P	99.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.76
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.76
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.76
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.75
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.74
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.74
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.74
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.73
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.73
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.71
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.71
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.7
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.7
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.69
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.69
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.69
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.68
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.67
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.66
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.65
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.64
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.64
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.63
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.63
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.63
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.62
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.62
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.61
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.61
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.61
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.61
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.6
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.6
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.59
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.58
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.58
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.56
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.55
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.54
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.53
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.53
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.52
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.52
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.52
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.51
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.51
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.51
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.5
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.49
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.48
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.46
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.46
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.46
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.46
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.46
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.46
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.45
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.45
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.45
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.44
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.44
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.44
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.43
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.42
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.41
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.41
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.4
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.39
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.39
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.38
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.37
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.36
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.36
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.34
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.33
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.32
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.32
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.31
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.31
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.3
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.28
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.27
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.26
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.25
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.25
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.24
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.24
4dna_A	463	Probable glutathione reductase; structural genomic	99.24
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.24
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.23
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.22
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.21
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.21
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.2
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.17
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.16
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.16
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.15
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.15
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.14
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.12
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.11
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.11
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.11
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.11
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.1
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.1
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.09
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.07
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.06
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.05
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.05
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.03
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.03
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.03
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.02
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.01
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.01
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.01
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.99
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.99
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.99
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.97
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.96
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.94
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.93
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.91
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.9
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.89
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.89
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.88
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.88
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.85
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.82
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.81
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.81
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.81
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.79
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.79
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.77
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.77
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.75
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.75
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.75
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.75
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.74
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.74
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.74
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.73
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.72
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.72
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.72
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.71
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.69
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.68
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.67
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.67
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.65
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.64
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.63
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.63
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.62
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.62
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.62
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.62
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.61
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.61
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.61
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.61
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.61
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.59
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.58
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.58
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.57
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.57
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.56
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.55
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.55
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.54
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.53
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.52
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.52
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.52
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.52
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.52
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.51
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.49
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.49
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.49
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.48
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.48
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.48
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.45
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.44
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.44
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.44
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.43
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.42
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.41
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.39
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.39
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.38
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.37
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.37
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.36
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.36
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.35
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.35
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.33
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.32
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.31
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.31
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.31
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.3
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.3
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.29
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.29
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.28
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.28
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.26
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.24
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.23
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.22
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.22
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.21
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.19
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.16
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.16
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.15
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.14
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.13
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.08
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.07
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.07
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.01
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.99
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.98
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.94
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.83
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.82
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.74
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.68
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.66
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.55
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.55
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.54
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.5
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.46
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.46
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.44
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.41
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.38
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.34
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.32
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.31
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.3
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.29
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.28
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.27
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.25
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.22
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.21
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.19
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.15
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.13
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.12
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.1
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.1
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.07
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.04
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.03
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.02
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.99
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.96
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.92
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.91
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.88
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.86
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.85
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.84
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.84
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.83
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.83
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.83
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.8
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.79
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.79
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.78
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.77
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.74
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.72
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.71
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.71
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.7
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.7
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.66
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.66
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.65
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.62
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.61
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.61
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.61
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.59
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.54
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.52
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.52
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.52
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.5
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.5
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.48
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.48
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.47
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.46
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.45
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.43
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.42
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.41
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.41
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.4
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.39
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.38
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.37
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.35
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.34
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.34
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.34
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.32
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.32
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.32
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.29
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.28
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.27
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.27
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.26
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.25
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.25
4dna_A	463	Probable glutathione reductase; structural genomic	96.23
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.23
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.21
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.2
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.16
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.13
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.11
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.11
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.1
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.08
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.06
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.04
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.03
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.03
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.02
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.99
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.98
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.96
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.94
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.93
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.92
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.92
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.92
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.91
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.9
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.9
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.89
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.86
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.85
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.85
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.83
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.82
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.82
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.81
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.81
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.8
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.79
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.78
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.77
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.76
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.76
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.71
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.69
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.69
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.68
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.67
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	95.66
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.66
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.66
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.65
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.65
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.65
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.64
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.63
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.63
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.62
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.62
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.61
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.57
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.55
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.51
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.47
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.42
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.37
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.33
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.32
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.31
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.3
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.29
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.28
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.28
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.27
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.18
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.15
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	95.15
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.11
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.09
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.09
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.08
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.07
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.04
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	94.04
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.01
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.01
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	95.0
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.99
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.97
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.97
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.95
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.93
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.93
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.93
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.92
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.91
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	94.89
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.87
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.85
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.85
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.85
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.84
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	94.83
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.82

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=5.6e-33  Score=223.58  Aligned_cols=223  Identities=26%  Similarity=0.459  Sum_probs=178.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+++++.+.|+++|+++.+.....+.....++....
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            34899999999999999999999999999999999888788999999999999999999999988888888877777553


Q ss_pred             Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                      +.. ..+++......+....+.++|..|.+.|.+.++.++++++++|++++.++   .. +.|++.+|+++.||+||+||
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDA---DG-VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecC---Cc-EEEEEcCCCEEeeCEEEECC
Confidence            444 44444321111123456899999999999988668999999999999874   44 88999999999999999999


Q ss_pred             CCchhhhhhh-cCC-CCcccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEecCC
Q 044609          163 GVHSMVAQWL-GLS-ESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYSP  230 (232)
Q Consensus       163 G~~S~~r~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  230 (232)
                      |.+|.+|+.+ +.. .+.+.++.++.+.+..+........+..|++++.+++++|++++..+|++....+
T Consensus       178 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  247 (407)
T 3rp8_A          178 GSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLP  247 (407)
T ss_dssp             CTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECC
T ss_pred             CcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCC
Confidence            9999999998 765 5556677788877765554444456677778888899999999998888876543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.97  E-value=3.5e-29  Score=201.00  Aligned_cols=215  Identities=22%  Similarity=0.266  Sum_probs=160.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+++++||+|||||++|+++|+.|+++|++|+|+||.+.+...+++..+.+++.+.++++|+.+.+.....+.....++.
T Consensus         2 M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (399)
T 2x3n_A            2 MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY   81 (399)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence            55566899999999999999999999999999999998777778899999999999999999998877666666655554


Q ss_pred             cCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccE--EEEeCCCcEEE
Q 044609           81 LGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAA--IINLGDSTIIK  154 (232)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~--~v~~~~g~~~~  154 (232)
                      . .+.. ..++......  ......++|..+.+.|.+.++   +++++++++|++++.++   +. +  .|++.+|++++
T Consensus        82 ~-~g~~~~~~~~~~~~~--~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~g~v~~~~g~~~~  154 (399)
T 2x3n_A           82 H-DGELLRYFNYSSVDA--RGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDE---RH-AIDQVRLNDGRVLR  154 (399)
T ss_dssp             E-TTEEEEEEETTSSCG--GGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECT---TS-CEEEEEETTSCEEE
T ss_pred             C-CCCEEEecchHHhcc--cCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC---Cc-eEEEEEECCCCEEE
Confidence            3 3322 4444432222  223467899999999998774   57999999999998864   33 5  78889998999


Q ss_pred             ccEEEecCCCchhhhhhhcCCCC-c--ccce--eEEEEeeecCCCCCCccceeEEEec-CeEEEEEEcCCCeEEEEEEe
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSES-I--NSGR--SSVRGLAVFPHGHGLNQDIRQFVGV-GFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ||+||+|||.+|.+|+.++.+.+ .  ++++  .++.+.+..+.  +..  . .++.+ +.+++++|++++.+.|++.+
T Consensus       155 ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~  228 (399)
T 2x3n_A          155 PRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVA--ERN--R-LYVDSQGGLAYFYPIGFDRARLVVSF  228 (399)
T ss_dssp             EEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHH--HCE--E-EEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEecCCC--CCc--c-EEEcCCCcEEEEEEcCCCEEEEEEEe
Confidence            99999999999999999987543 3  4555  66665544321  111  3 55566 66788999999887777643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.97  E-value=3e-28  Score=195.44  Aligned_cols=203  Identities=21%  Similarity=0.251  Sum_probs=153.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (232)
                      |+++++||+||||||+|+++|+.|+++|++|+|+||.+.+ ...++++.+.+++.+.|+++|+.+  .....+.....++
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~   78 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYV   78 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEE
Confidence            7778899999999999999999999999999999998775 445788889999999999999987  4445555555555


Q ss_pred             EcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           80 NLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      ....+.. ...+.+         .....+..+.+.|.+.+++++++++++|++++.++   +. +.|++.+|+++.||+|
T Consensus        79 ~~~~g~~~~~~~~~---------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~v  145 (397)
T 2vou_A           79 DALTGERVGSVPAD---------WRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS---ET-VQMRFSDGTKAEANWV  145 (397)
T ss_dssp             ETTTCCEEEEEECC---------CCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS---SC-EEEEETTSCEEEESEE
T ss_pred             ecCCCCccccccCc---------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---CE-EEEEECCCCEEECCEE
Confidence            5313333 222221         12467889999999888889999999999998764   34 7888999999999999


Q ss_pred             EecCCCchhhhhhhcCC-CCcccceeEEEEeeecCCCCC-----CccceeEEEecCeEEEEEEcCCC
Q 044609          159 IGCDGVHSMVAQWLGLS-ESINSGRSSVRGLAVFPHGHG-----LNQDIRQFVGVGFRAGFIPLNDR  219 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~  219 (232)
                      |+|||.+|.+|+.++ + .+.+.++.+|++.+......+     ....+..+.+++.++.++|++++
T Consensus       146 V~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (397)
T 2vou_A          146 IGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGR  211 (397)
T ss_dssp             EECCCTTCHHHHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCS
T ss_pred             EECCCcchhHHHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecCCCEEEEEECCCC
Confidence            999999999999998 5 344555666776655322111     01234556677777888898764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.97  E-value=3.6e-28  Score=193.86  Aligned_cols=210  Identities=26%  Similarity=0.335  Sum_probs=161.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ..+||+|||||++|+++|+.|+++|++|+|+||.+.+...++++.+.+++.+.|+++|+.+.+.....+.....++..  
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--   87 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH--   87 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC--
Confidence            358999999999999999999999999999999988877788999999999999999999998887777777766654  


Q ss_pred             Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      +.. ..++..   +  . ..+.++|..+.+.|.+.+.  +++++++++|++++. +  + .   |++.+|++++||+||+
T Consensus        88 g~~~~~~~~~---~--~-~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~-~---v~~~~g~~~~ad~vV~  154 (379)
T 3alj_A           88 NKSVSKETFN---G--L-PWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V--G-R---LTLQTGEVLEADLIVG  154 (379)
T ss_dssp             TEEEEEECGG---G--C-CEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T--T-E---EEETTSCEEECSEEEE
T ss_pred             CceeeeccCC---C--C-ceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C-E---EEECCCCEEEcCEEEE
Confidence            433 333322   1  1 2568999999999988764  789999999999986 3  4 3   5677888999999999


Q ss_pred             cCCCchhhhhhhcCC-CCcccceeEEEEeeecCC---CCC-CccceeE--EEecCeEEEEEEcCCCeEEEEEEec
Q 044609          161 CDGVHSMVAQWLGLS-ESINSGRSSVRGLAVFPH---GHG-LNQDIRQ--FVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       161 A~G~~S~~r~~~~~~-~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      |||.+|.+|+.++.. .+.+.++.++.+.+....   +.. .......  +++++.+++++|++++..+|++...
T Consensus       155 AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  229 (379)
T 3alj_A          155 ADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAP  229 (379)
T ss_dssp             CCCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEEC
T ss_pred             CCCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEec
Confidence            999999999999754 334456666666655421   111 1112222  4566777889999999988877664

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.97  E-value=7e-28  Score=198.03  Aligned_cols=209  Identities=17%  Similarity=0.180  Sum_probs=155.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+... .+....  .+  .
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~--~~--~   85 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQG--HF--G   85 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEE--EE--T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-cccccc--ee--c
Confidence            458999999999999999999999999999999988877788999999999999999999887654 222111  11  1


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc---EEEccEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST---IIKAKVL  158 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~---~~~a~~v  158 (232)
                      +  ..+++...... .+....+++..+.+.|.+.+.  +++++++++|++++.++   +. +.|++.++.   +++||+|
T Consensus        86 ~--~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~~a~~v  158 (499)
T 2qa2_A           86 G--RPVDFGVLEGA-HYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG---DH-VVVEVEGPDGPRSLTTRYV  158 (499)
T ss_dssp             T--EEEEGGGSTTC-CCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS---SC-EEEEEECSSCEEEEEEEEE
T ss_pred             c--eecccccCCCC-CCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCcEEEEeCEE
Confidence            1  12333222111 223567899999999988764  78999999999998874   33 667777764   7999999


Q ss_pred             EecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          159 IGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      |+|||.+|.+|+.++++.+... .+..+.+.+..... +  ..+..++.++.+++++|++++..++.+..
T Consensus       159 VgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~-~--~~~~~~~~~~g~~~~~P~~~g~~~~~~~~  225 (499)
T 2qa2_A          159 VGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEI-T--PRPIGETVPLGMVMSAPLGDGVDRIIVCE  225 (499)
T ss_dssp             EECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCC-C--CEEEEEEETTEEEEEEECSSSCEEEEEEE
T ss_pred             EEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECCC-C--cceEEEECCCeEEEEEEcCCCEEEEEEEe
Confidence            9999999999999998766543 34455555554432 1  22444556666788999999876555543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.96  E-value=8.9e-28  Score=197.45  Aligned_cols=209  Identities=16%  Similarity=0.171  Sum_probs=153.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.++++++|+++|+.+.+... .+.....  +  .
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~--~--~   84 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGH--F--G   84 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEE--E--T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-ccccccc--c--c
Confidence            568999999999999999999999999999999988877788999999999999999999887655 3222211  1  1


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc---EEEccEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST---IIKAKVL  158 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~---~~~a~~v  158 (232)
                      +  ..+++...... .+....+++..+.+.|.+.+.  +++++++++|++++.++   +. +.|++.++.   +++||+|
T Consensus        85 ~--~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~~a~~v  157 (500)
T 2qa1_A           85 G--LPIDFGVLEGA-WQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDG---AG-VTVEVRGPEGKHTLRAAYL  157 (500)
T ss_dssp             T--EEEEGGGSTTG-GGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEET---TE-EEEEEEETTEEEEEEESEE
T ss_pred             c--eecccccCCCC-CCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcC---Ce-EEEEEEcCCCCEEEEeCEE
Confidence            1  12333221110 223567899999999988764  78999999999998874   34 667776664   7999999


Q ss_pred             EecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          159 IGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      |+|||.+|.+|+.++.+.+... .+..+.+.+..... +  ..+..++.++.+++++|++++..++.+..
T Consensus       158 VgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~g~~~~~p~~~g~~~~~~~~  224 (500)
T 2qa1_A          158 VGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVEL-Q--PRMIGETLPGGMVMVGPLPGGITRIIVCE  224 (500)
T ss_dssp             EECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCCC-C--CEEEEEEETTEEEEEEEETTTEEEEEEEE
T ss_pred             EECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCCC-C--CceEEEECCCcEEEEEEcCCCEEEEEEEc
Confidence            9999999999999998766543 34455555544321 1  22444556666788999999876555443

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.96  E-value=2.1e-27  Score=190.55  Aligned_cols=216  Identities=19%  Similarity=0.206  Sum_probs=157.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC--cceeeeecc-cHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA--TGAALTLSP-NAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~--~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      +++||+|||||++|+++|+.|++.|++|+||||.+.+..  .+.++.+.+ ++.+.|+++|+++.+.....+... .++.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~  103 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIAD  103 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEEC
Confidence            458999999999999999999999999999999876532  455566654 568999999999998876665554 3332


Q ss_pred             cCCCceeEEec--cCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSY--AGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                       ..+.. ....  +.. .  ......++|..|.+.|.+.+++++++++++|++++.++   +. +.|++.+|++++||+|
T Consensus       104 -~~g~~-~~~~~~~~~-~--~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~v  174 (398)
T 2xdo_A          104 -EKGNI-LSTKNVKPE-N--RFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK---KK-WTLTFENKPSETADLV  174 (398)
T ss_dssp             -SSSEE-EEECCCGGG-T--TSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS---SS-EEEEETTSCCEEESEE
T ss_pred             -CCCCc-hhhcccccc-C--CCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC---CE-EEEEECCCcEEecCEE
Confidence             33332 1121  111 1  12233689999999999988878899999999998764   34 7888999988999999


Q ss_pred             EecCCCchhhhhhhcCCCCcccceeEEEEeeecCCC-CC-----CccceeEEEecCeEEEEEEcCCCeEEEEEEecC
Q 044609          159 IGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHG-HG-----LNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRYS  229 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  229 (232)
                      |+|||.+|.+|+.++...+.+.+..++.+.+..... .+     .......+++++..++++|.+++..+|++.+..
T Consensus       175 V~AdG~~S~vR~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  251 (398)
T 2xdo_A          175 ILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKT  251 (398)
T ss_dssp             EECSCTTCSCCTTTCCCCCEEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEEEEC
T ss_pred             EECCCcchhHHhhccCCCceEcceEEEEEEeCchhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEEEec
Confidence            999999999999987655666666666665432110 00     012234555677777788999988777766543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.96  E-value=4.8e-27  Score=189.76  Aligned_cols=222  Identities=18%  Similarity=0.173  Sum_probs=157.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce-eeEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK-RVFVT   79 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~   79 (232)
                      |+++++||+|||||++|+++|+.|+++|++|+|+||.+.+.. +.+..+.+...+.++++|+.+.+........ ...+.
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~-~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   79 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF-VIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFV   79 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC-cccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEE
Confidence            676779999999999999999999999999999999976643 5677888999999999999998877654433 33333


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc--EEEc
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST--IIKA  155 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~--~~~a  155 (232)
                      +  ......+++...........+.++|..+.+.|.+.+.  +++++++++|+++..+++ +.. +.+.+.+|+  +++|
T Consensus        80 ~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~-v~v~~~~g~~~~~~a  155 (421)
T 3nix_A           80 R--GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSV-TTIEDINGNKREIEA  155 (421)
T ss_dssp             E--TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEE-EEEEETTSCEEEEEE
T ss_pred             e--CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEE-EEEEcCCCCEEEEEc
Confidence            2  2333445554332211344678999999999998764  899999999999988642 223 667778887  7999


Q ss_pred             cEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCCC-CCc-cceeEEE---ecCeEEEEEEcCCCeEEEEEEe
Q 044609          156 KVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHGH-GLN-QDIRQFV---GVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      |+||+|||.+|.+++.++.+.+.. +...++...+...... ..+ .....++   .++.+++++|++++.+.+.++.
T Consensus       156 ~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~  233 (421)
T 3nix_A          156 RFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVG  233 (421)
T ss_dssp             EEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred             CEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEe
Confidence            999999999999999998765543 3344444443332211 111 1112222   3566789999999987666654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.96  E-value=4.8e-27  Score=198.78  Aligned_cols=223  Identities=19%  Similarity=0.194  Sum_probs=157.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRR-----LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~-----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (232)
                      ++||+||||||+|+++|+.|++     .|++|+||||.+.+...+++..++++++++|+++|+++.+.....++..+.++
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~   87 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   87 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEE
Confidence            5899999999999999999999     99999999999888778899999999999999999999998888888777776


Q ss_pred             EcCC-Cce-eEEeccC-CCCCCCCceeeeehHHHHHHHhhhCC--C---CeEEeCceEEEEEecCC-----CCCccEEEE
Q 044609           80 NLGT-GAT-QELSYAG-KSGRIGSGLRSVHRQSLLEALADELP--D---DTIQFSSKIAAIDSQTL-----NGSSAAIIN  146 (232)
Q Consensus        80 ~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~---~~i~~~~~v~~i~~~~~-----~g~~~~~v~  146 (232)
                      .... +.. ....+.. ..+........++|..+.+.|.+.+.  +   ++++++++|++++.++.     ++.. +.++
T Consensus        88 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~-V~v~  166 (665)
T 1pn0_A           88 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP-VTMT  166 (665)
T ss_dssp             EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC-EEEE
T ss_pred             eCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC-EEEE
Confidence            6432 222 1111211 11111233457899999999988764  3   79999999999987640     0123 4444


Q ss_pred             e------------------------------------------CCC--cEEEccEEEecCCCchhhhhhhcCCCCcccce
Q 044609          147 L------------------------------------------GDS--TIIKAKVLIGCDGVHSMVAQWLGLSESINSGR  182 (232)
Q Consensus       147 ~------------------------------------------~~g--~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~  182 (232)
                      +                                          .+|  ++++||+||+|||++|.+|+.++.+.+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~~  246 (665)
T 1pn0_A          167 LRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTD  246 (665)
T ss_dssp             EEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEEE
T ss_pred             EEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCcc
Confidence            3                                          245  47999999999999999999999876654443


Q ss_pred             eEEEEeeec--CCCCCCccceeEEE-ecCeEEEEEEcCCCeEEEEEEecC
Q 044609          183 SSVRGLAVF--PHGHGLNQDIRQFV-GVGFRAGFIPLNDRDVYWFLNRYS  229 (232)
Q Consensus       183 ~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~  229 (232)
                      ..| +++..  ....+.......+. .++.+++++|++++.+++++.+..
T Consensus       247 ~~~-~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~  295 (665)
T 1pn0_A          247 YIW-GVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQA  295 (665)
T ss_dssp             EEE-EEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC
T ss_pred             EEE-EEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCC
Confidence            333 33221  11111111112222 245568899999997777766543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.96  E-value=1.8e-27  Score=197.65  Aligned_cols=220  Identities=20%  Similarity=0.264  Sum_probs=153.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceee---E
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRV---F   77 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~   77 (232)
                      |+++++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+++++.|+++|+.+.+.....+....   .
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCE
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCccccccee
Confidence            7777899999999999999999999999999999999988878889999999999999999999988876655432   1


Q ss_pred             --EEEcCCCce-eEE--eccC----CCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCC--ccEE
Q 044609           78 --VTNLGTGAT-QEL--SYAG----KSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGS--SAAI  144 (232)
Q Consensus        78 --~~~~~~~~~-~~~--~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~--~~~~  144 (232)
                        ......+.. ..+  .+..    .....+.....+++..+.+.|.+.+.  +++++++++|++++.+++ +.  . +.
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~~~-v~  158 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDD-DAGAG-VT  158 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECG-GGCSE-EE
T ss_pred             eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-Ccccc-EE
Confidence              111122222 211  1110    01101233557899999999988764  799999999999998741 10  4 66


Q ss_pred             EEeCCC---cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEE-Eeeec--CCCCCCccc-eeEEEecCeEEEEEEcC
Q 044609          145 INLGDS---TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVR-GLAVF--PHGHGLNQD-IRQFVGVGFRAGFIPLN  217 (232)
Q Consensus       145 v~~~~g---~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~p~~  217 (232)
                      +++.++   .+++||+||+|||.+|.+|+.+|++.+.......+. ..+..  +........ +..++.++...+++|++
T Consensus       159 v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~  238 (535)
T 3ihg_A          159 ARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTD  238 (535)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECS
T ss_pred             EEEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEECCCceEEEEEec
Confidence            777665   689999999999999999999988765543222222 22222  111111112 33444566667788998


Q ss_pred             CCeEE
Q 044609          218 DRDVY  222 (232)
Q Consensus       218 ~~~~~  222 (232)
                      ++..+
T Consensus       239 ~~~~~  243 (535)
T 3ihg_A          239 RPDRH  243 (535)
T ss_dssp             STTEE
T ss_pred             CCCEE
Confidence            75443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.96  E-value=6.8e-27  Score=188.27  Aligned_cols=206  Identities=25%  Similarity=0.339  Sum_probs=148.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .++||+||||||+|+++|+.|+++|++ |+||||.+.+...++++.+++++.+.|+++|+.+.+.....+.....++.. 
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~-   81 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-   81 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT-
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcC-
Confidence            468999999999999999999999999 999999988877788999999999999999999988877666655555442 


Q ss_pred             CCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---C-CeEEeCceEEEEEecCCCCCccEEEEeCC---C--cE
Q 044609           83 TGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP---D-DTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TI  152 (232)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~  152 (232)
                      .+.. ...+.....+ +......++|..|.+.|.+.+.   + ++++++++|+++.. +  +.  +.|.+.+   |  .+
T Consensus        82 ~g~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~--~~--v~v~~~~~~~g~~~~  155 (410)
T 3c96_A           82 SGATVWSEPRGVEAG-NAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-R--DG--RVLIGARDGHGKPQA  155 (410)
T ss_dssp             TSCEEEEEECGGGGT-CSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E--TT--EEEEEEEETTSCEEE
T ss_pred             CCCEEeeccCCcccc-CCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C--Cc--cEEEEecCCCCCceE
Confidence            2333 2222111111 1233567899999999988763   4 58999999999987 4  33  5566554   6  47


Q ss_pred             EEccEEEecCCCchhhhhhhcCCC--CcccceeEEEEeeecCCCCCCccceeEEEe--cCeEEEEEEcCC
Q 044609          153 IKAKVLIGCDGVHSMVAQWLGLSE--SINSGRSSVRGLAVFPHGHGLNQDIRQFVG--VGFRAGFIPLND  218 (232)
Q Consensus       153 ~~a~~vV~A~G~~S~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~  218 (232)
                      +.||+||+|||.+|.+|+.++...  +.+.+...|++....+...  ......+++  ++.+++++|+++
T Consensus       156 ~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~  223 (410)
T 3c96_A          156 LGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFL--DGKTMIVANDEHWSRLVAYPISA  223 (410)
T ss_dssp             EEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCT--TSSEEEEEECTTCCEEEEEECCH
T ss_pred             EecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeeccccccc--CCCeEEEecCCCCcEEEEEecCC
Confidence            999999999999999999986432  3344555666655443211  122233344  355688999863

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.95  E-value=1.5e-27  Score=198.54  Aligned_cols=211  Identities=21%  Similarity=0.199  Sum_probs=145.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+.+.++|+++|+++.+...........  +  .
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~--~--~  123 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLP--F--A  123 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCC--B--T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCce--e--C
Confidence            46899999999999999999999999999999999888888999999999999999999999877655433110  0  1


Q ss_pred             Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--CCC-cEEEccE
Q 044609           84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS-TIIKAKV  157 (232)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g-~~~~a~~  157 (232)
                      +.. ..+++...... .+....+++..+.+.|.+.+.  +++++++++|++++.++   +. +.|++  .+| ++++||+
T Consensus       124 ~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~---~~-v~v~~~~~~G~~~~~a~~  198 (570)
T 3fmw_A          124 GIFTQGLDFGLVDTR-HPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA---EA-VEVTVAGPSGPYPVRARY  198 (570)
T ss_dssp             TBCTTCCBGGGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS---SC-EEEEEEETTEEEEEEESE
T ss_pred             CcccccccccccCCC-CCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---Ce-EEEEEEeCCCcEEEEeCE
Confidence            110 12222221111 223457899999999988775  78999999999998764   33 55666  788 6899999


Q ss_pred             EEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCCCCcccee-EEEecCeEEEE-EEcCCCeE-EEEEEe
Q 044609          158 LIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGHGLNQDIR-QFVGVGFRAGF-IPLNDRDV-YWFLNR  227 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~p~~~~~~-~~~~~~  227 (232)
                      ||+|||.+|.+|+.++++.+... .+..+.+.+....+.   ..+. .+...+. +++ +|++++.. ++++..
T Consensus       199 vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~G~-~~~~~P~~~g~~~~i~~~~  268 (570)
T 3fmw_A          199 GVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE---VPRRWERTPDGI-LVLAFPPEGGLGPGWSSSS  268 (570)
T ss_dssp             EEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS---SCCCCCCCCSSC-EEECCCC------CEEEEE
T ss_pred             EEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC---cceEEEecCCEE-EEEEeecCCCeEEEEEEEe
Confidence            99999999999999998866543 444555444443322   1122 2334444 545 79998865 454443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.95  E-value=5.4e-26  Score=187.71  Aligned_cols=223  Identities=15%  Similarity=0.081  Sum_probs=153.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHH-HHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWL-ALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ++++||+|||||++|+++|+.|+++|++|+||||.+.+.. +.+..+.+.... .++.+|+.+.+...............
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   83 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRH-QIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW   83 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCC-CCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence            4558999999999999999999999999999999975533 345566676554 88999999888776665544333322


Q ss_pred             CCC-ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc--EEEc
Q 044609           82 GTG-ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST--IIKA  155 (232)
Q Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~--~~~a  155 (232)
                      ... ....+.+...........+.++|..+.+.|.+.+.  +++++++++|+++..++  +.. .+.+...+|+  +++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~a  161 (512)
T 3e1t_A           84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHA  161 (512)
T ss_dssp             SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEE
T ss_pred             cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEc
Confidence            222 11233333221111344667999999999988764  89999999999999864  332 1445556674  8999


Q ss_pred             cEEEecCCCchhhhhhhcCCC-CcccceeEEEEeeecCCC--CCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          156 KVLIGCDGVHSMVAQWLGLSE-SINSGRSSVRGLAVFPHG--HGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      |+||+|||.+|.+|+.++... ..+....++.+++.....  .+..........++.+++++|++++.+.+.++..
T Consensus       162 d~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~  237 (512)
T 3e1t_A          162 RFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVS  237 (512)
T ss_dssp             EEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEE
T ss_pred             CEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEec
Confidence            999999999999999997542 233455666665543221  1222233344445667999999999876666553

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.95  E-value=8.5e-26  Score=187.84  Aligned_cols=213  Identities=19%  Similarity=0.271  Sum_probs=149.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCcee---eEEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKR---VFVTN   80 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~   80 (232)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..++++++++|+++|+.+.+.+...+...   ..+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            458999999999999999999999999999999988877888999999999999999999998877665532   12221


Q ss_pred             cCCCce-eEEeccCCCC-----CCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---C-
Q 044609           81 LGTGAT-QELSYAGKSG-----RIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S-  150 (232)
Q Consensus        81 ~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g-  150 (232)
                      ...+.. ..+++.....     ..+.....+++..+.+.|.+.+... ++++++|++++.++   +. +.+++.+   | 
T Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~---~~-v~v~~~~~~~G~  179 (549)
T 2r0c_A          105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRD---DH-VRATITDLRTGA  179 (549)
T ss_dssp             SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECS---SC-EEEEEEETTTCC
T ss_pred             cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeC---CE-EEEEEEECCCCC
Confidence            122322 3333321100     0123346788999999999887644 99999999998875   33 5555544   6 


Q ss_pred             -cEEEccEEEecCCCchhhhhhhcCCCCccc-ceeEEEEeeecCCCC---CCccceeEE-EecC-eEEEEEEcCCCeE
Q 044609          151 -TIIKAKVLIGCDGVHSMVAQWLGLSESINS-GRSSVRGLAVFPHGH---GLNQDIRQF-VGVG-FRAGFIPLNDRDV  221 (232)
Q Consensus       151 -~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~p~~~~~~  221 (232)
                       .+++||+||+|||.+|.+|+.++.+.+... .+..+.+.+..+...   ...+.+.++ +.++ ..++++|++++..
T Consensus       180 ~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~  257 (549)
T 2r0c_A          180 TRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGL  257 (549)
T ss_dssp             EEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSSE
T ss_pred             EEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCcE
Confidence             479999999999999999999988766543 233333444433210   011223333 3444 5688999977543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.95  E-value=2.6e-26  Score=183.69  Aligned_cols=215  Identities=17%  Similarity=0.192  Sum_probs=138.6

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-ceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-GAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      |.+|||+||||||+|+++|+.|+++|++|+||||.+.++.. .++..+.+   ..++++++...............++..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~   78 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSK---GILNEADIKADRSFIANEVKGARIYGP   78 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEET---HHHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCH---HHHHHcCCCchhhhhhcccceEEEEeC
Confidence            45699999999999999999999999999999998776432 23445554   466777765443333333444555443


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe-CCC--cEEEcc
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDS--TIIKAK  156 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g--~~~~a~  156 (232)
                      ............ ..  ....+.++|..+.+.|.+.+.  |++++++++|+++..++  +.. ..+.. .++  .+++||
T Consensus        79 ~~~~~~~~~~~~-~~--~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~-~~v~~~~~~~~~~~~a~  152 (397)
T 3oz2_A           79 SEKRPIILQSEK-AG--NEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN--GKV-AGAKIRHNNEIVDVRAK  152 (397)
T ss_dssp             TCSSCEEEECSS-SS--CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEE-EEEEEEETTEEEEEEEE
T ss_pred             CCceEeeccccc-cC--CceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc--cee-eeeeecccccceEEEEe
Confidence            322222222221 12  344678999999999988765  89999999999998765  343 33332 233  378999


Q ss_pred             EEEecCCCchhhhhhhcCCCCcccceeEEEE-eeecCCCCCCccceeEEE----ecCeEEEEEEcCCCeEEEEEEe
Q 044609          157 VLIGCDGVHSMVAQWLGLSESINSGRSSVRG-LAVFPHGHGLNQDIRQFV----GVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      +||+|||.+|.+|+.++...+.......... ....... ..++.+..++    .++.+.+++|.+++.....+..
T Consensus       153 ~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~  227 (397)
T 3oz2_A          153 MVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINV-DVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGS  227 (397)
T ss_dssp             EEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESC-CCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeecc-ccCcccceeeeeccCCCceEEEeecccceeEEEEee
Confidence            9999999999999999876443322221111 1111111 1223333332    3456788899999876655543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.95  E-value=1.8e-26  Score=184.97  Aligned_cols=215  Identities=17%  Similarity=0.190  Sum_probs=144.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC--cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL--RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ++||+||||||+|+++|+.|++.|++|+|+||.+.+  ....++..+++++.+.|+++|+++.+.....+.....+++  
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~--   79 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAF--   79 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEE--
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEE--
Confidence            479999999999999999999999999999998753  1222333588999999999999999887766666665554  


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKV  157 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~  157 (232)
                      .+....+++.....  ......+.+..+.+.|.+.+.  +++++++++|++++.++  +.. +.|++ .+|+  +++||+
T Consensus        80 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~~v~~~~~g~~~~~~a~~  154 (394)
T 1k0i_A           80 AGQRRRIDLKRLSG--GKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ--GER-PYVTFERDGERLRLDCDY  154 (394)
T ss_dssp             TTEEEEECHHHHHT--SCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT--SSS-CEEEEEETTEEEEEECSE
T ss_pred             CCceEEeccccccC--CCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEec--CCc-eEEEEecCCcEEEEEeCE
Confidence            23233333322111  223456678888888877653  78999999999998753  233 55666 6776  799999


Q ss_pred             EEecCCCchhhhhhhcCCC-Ccccce--eEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          158 LIGCDGVHSMVAQWLGLSE-SINSGR--SSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       158 vV~A~G~~S~~r~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      ||+|||.+|.+|+.++... +.+...  ..+.+.......  ..+...+...++.+.++.|.+++..+|++...
T Consensus       155 vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  226 (394)
T 1k0i_A          155 IAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPP--VSHELIYANHPRGFALCSQRSATRSQYYVQVP  226 (394)
T ss_dssp             EEECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCC--SCSSCEEECCTTCCEEEEEEETTEEEEEEEEC
T ss_pred             EEECCCCCcHHHHhcCccccccccccccceeEEEecCCCC--CccceEEEEcCCceEEEEecCCCcEEEEEEeC
Confidence            9999999999999987542 222222  233333322111  11222223334444555565666666665543

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.95  E-value=1e-25  Score=190.22  Aligned_cols=221  Identities=15%  Similarity=0.186  Sum_probs=153.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC-
Q 044609            5 EEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG-   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-   82 (232)
                      ++||+||||||+|+++|+.|++ .|++|+||||.+.+...+++..++++++++|+++|+.+.+.....+.....++... 
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~  111 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP  111 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence            5899999999999999999999 99999999999888778899999999999999999999988777666666555432 


Q ss_pred             --CCce-e--EEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CC--eEEeCceEEEEEecCC-CCCccEEEEeC----
Q 044609           83 --TGAT-Q--ELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DD--TIQFSSKIAAIDSQTL-NGSSAAIINLG----  148 (232)
Q Consensus        83 --~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~i~~~~~-~g~~~~~v~~~----  148 (232)
                        .+.. .  .++... .+........+++..+.+.|.+.+.  ++  +++++++|++++.+++ ++.. +.|++.    
T Consensus       112 ~~~g~~~~~~~~~~~~-~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~-v~v~~~~~~~  189 (639)
T 2dkh_A          112 GQPGRIARHGRVQDTE-DGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYP-VTVTLERCDA  189 (639)
T ss_dssp             TSTTCEEEEEEEESSC-TTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCC-EEEEEEECSG
T ss_pred             CCCcceEeecccCccc-CCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCC-EEEEEEeccc
Confidence              1322 1  122111 1111233467889999999988764  44  8999999999988642 0223 556554    


Q ss_pred             --CC--cEEEccEEEecCCCchhhhhhhcCCCCcccceeEEEEeeec--CCCCCCccceeEEEecCeEEEEEEcCCC-eE
Q 044609          149 --DS--TIIKAKVLIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVF--PHGHGLNQDIRQFVGVGFRAGFIPLNDR-DV  221 (232)
Q Consensus       149 --~g--~~~~a~~vV~A~G~~S~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~  221 (232)
                        +|  .+++||+||+|||.+|.+|+.++.+.+.......| +.+..  ....+.......+..++.+++++|++++ .+
T Consensus       190 ~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~  268 (639)
T 2dkh_A          190 AHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAW-GVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPREGGHLV  268 (639)
T ss_dssp             GGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCE-EEEEEEEEECCTTTTSEEEEEETTEEEEEEECTTSSCE
T ss_pred             cCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceE-EEEEEEEccCCCccceeEEEEcCCceEEEEEcCCCcEE
Confidence              45  47999999999999999999999876554433333 22111  1111111112222225566889999998 55


Q ss_pred             EEEEEec
Q 044609          222 YWFLNRY  228 (232)
Q Consensus       222 ~~~~~~~  228 (232)
                      ++++.+.
T Consensus       269 r~~~~~~  275 (639)
T 2dkh_A          269 RFYVEMD  275 (639)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            5555443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.95  E-value=2e-25  Score=186.21  Aligned_cols=221  Identities=19%  Similarity=0.180  Sum_probs=153.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCce-eeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAK-RVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~   81 (232)
                      |+++||+|||||++|+++|+.|+++|++|+|||+.+.+.. +.+..+.+.+.+.++.+|+++.+........ ...+.+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   99 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWG   99 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEec
Confidence            3468999999999999999999999999999999876543 4578889999999999999988877654433 2333332


Q ss_pred             CCCceeEEeccCCC--CCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC-CC--cEEE
Q 044609           82 GTGATQELSYAGKS--GRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG-DS--TIIK  154 (232)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g--~~~~  154 (232)
                      .......+.+....  ....+..+.+++..+.+.|.+.+.  |++++++++|+++..++  +.. +.|.+. +|  .++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~-~~V~~~~~G~~~~i~  176 (591)
T 3i3l_A          100 QDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD--PDR-VVLTVRRGGESVTVE  176 (591)
T ss_dssp             SSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTC-EEEEEEETTEEEEEE
T ss_pred             CCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCE-EEEEEecCCceEEEE
Confidence            22222333333211  111334678899999999988764  89999999999998764  454 777776 66  5799


Q ss_pred             ccEEEecCCCchhhhhhhcCCCCcc-cceeEEEEeeecCCC--CCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          155 AKVLIGCDGVHSMVAQWLGLSESIN-SGRSSVRGLAVFPHG--HGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ||+||+|||.+|.+|+.++.+.+.. ....++.+.+.....  .+..........++.+++++|++++.+.+.+..
T Consensus       177 AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~  252 (591)
T 3i3l_A          177 SDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVV  252 (591)
T ss_dssp             ESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEE
T ss_pred             cCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEc
Confidence            9999999999999999998653322 222333333332221  122233334445666799999999876655544

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.95  E-value=2.2e-26  Score=185.15  Aligned_cols=181  Identities=23%  Similarity=0.213  Sum_probs=128.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC--cceeeeecccHHHHHHHcCChHHHHhhcc---CceeeEEEEc
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA--TGAALTLSPNAWLALDALGVSHKLTSVYA---PAKRVFVTNL   81 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~   81 (232)
                      +|+||||||+||++|+.|+++|++|+|+||.+.+..  .|.++.+.++++++|+++|+.+.+.....   ..........
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            699999999999999999999999999999987754  36788899999999999999877643221   1111111111


Q ss_pred             CCCceeEEe--ccCC-CCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           82 GTGATQELS--YAGK-SGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        82 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      .........  .... ..........++|..|.+.|.+.+ +.+++++++|++++..+  +.. +.|++.||++++||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~-~~~v~~~~~v~~~~~~~--~~~-v~v~~~dG~~~~adlv  158 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL-ANTIQWNKTFVRYEHIE--NGG-IKIFFADGSHENVDVL  158 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTC-TTTEECSCCEEEEEECT--TSC-EEEEETTSCEEEESEE
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhc-cceEEEEEEEEeeeEcC--CCe-EEEEECCCCEEEeeEE
Confidence            122111110  0000 010133345789999999999887 45799999999998765  334 8899999999999999


Q ss_pred             EecCCCchhhhhhhcCCC-CcccceeEEEEeeec
Q 044609          159 IGCDGVHSMVAQWLGLSE-SINSGRSSVRGLAVF  191 (232)
Q Consensus       159 V~A~G~~S~~r~~~~~~~-~~~~~~~~~~~~~~~  191 (232)
                      |+|||.+|.+|+.++... +.+.+...+.+....
T Consensus       159 VgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~  192 (412)
T 4hb9_A          159 VGADGSNSKVRKQYLPFIERFDVGVSMIIGRARL  192 (412)
T ss_dssp             EECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEEC
T ss_pred             EECCCCCcchHHHhCCCccccccceeEEEEEEec
Confidence            999999999999986553 334566666665443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.93  E-value=2.3e-24  Score=175.55  Aligned_cols=209  Identities=16%  Similarity=0.106  Sum_probs=137.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHh-hccCceeeEEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTS-VYAPAKRVFVTN   80 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~   80 (232)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+.  ...++..+   +.+.++++|+...... ..........+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            56999999999999999999999999999999987653  22233333   4577888887653221 111222222221


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--II  153 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~  153 (232)
                       ..+ ...+.+       +...+.++|..+.+.|.+.+.  +++++++++|+++..++  +.. ..|.+.   +|+  ++
T Consensus        82 -~~~-~~~~~~-------~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v-~gv~~~~~~~G~~~~~  149 (453)
T 3atr_A           82 -PDM-QTVWTV-------NGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYV-KGAVLFNRRTNEELTV  149 (453)
T ss_dssp             -TTS-SCEEEE-------EEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEE-EEEEEEETTTTEEEEE
T ss_pred             -CCC-ceEEeE-------CCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEE-EEEEEEEcCCCceEEE
Confidence             111 111221       112457899999999988764  79999999999998764  332 324443   665  79


Q ss_pred             EccEEEecCCCchhhhhhhcCCCCc----c--cceeEEEEeeecCCCCCCcccee-EEEe----cCeEEEEEEcCCCeEE
Q 044609          154 KAKVLIGCDGVHSMVAQWLGLSESI----N--SGRSSVRGLAVFPHGHGLNQDIR-QFVG----VGFRAGFIPLNDRDVY  222 (232)
Q Consensus       154 ~a~~vV~A~G~~S~~r~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~p~~~~~~~  222 (232)
                      +||+||+|||.+|.+|+.++...+.    .  ....++.+.+....+. .++.+. .+++    ++.+++++|.+++.++
T Consensus       150 ~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~  228 (453)
T 3atr_A          150 YSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDI-EDHDYLRIFIDQETSPGGYWWYFPKGKNKVN  228 (453)
T ss_dssp             ECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCC-TTTTEEEEECCTTTSTTSCEEEEEEETTEEE
T ss_pred             EcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCc-cCCCeEEEEECCCCCCCcEEEEEECCCCeEE
Confidence            9999999999999999999765421    1  2244555555444322 133443 3432    4557889999998776


Q ss_pred             EEEEec
Q 044609          223 WFLNRY  228 (232)
Q Consensus       223 ~~~~~~  228 (232)
                      +.+...
T Consensus       229 vg~~~~  234 (453)
T 3atr_A          229 VGLGIQ  234 (453)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            665543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.91  E-value=1e-21  Score=162.77  Aligned_cols=216  Identities=14%  Similarity=0.144  Sum_probs=139.0

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh------------CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHH--H
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR------------LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK--L   66 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~------------~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~   66 (232)
                      |+++.+||+|||||++|+++|..|++            .|++|+|||+.+.+. .+.+..+.+++.+.++++|+.+.  +
T Consensus         3 m~~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~-~g~g~~~~p~~~~~l~~lGi~e~~~~   81 (526)
T 2pyx_A            3 MQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT-IGVGEGTWPSMRSTLSKIGIDENDFI   81 (526)
T ss_dssp             GGSCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC-CCSCEECCTHHHHHHHHHTCCHHHHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC-cceeeechHhHHHHHHHcCCCHHHHH
Confidence            33456899999999999999999999            999999999976554 34478899999999999999886  4


Q ss_pred             HhhccC-ceeeEEEEcCC------Cce--eEE---------ecc-------CC------------------------CC-
Q 044609           67 TSVYAP-AKRVFVTNLGT------GAT--QEL---------SYA-------GK------------------------SG-   96 (232)
Q Consensus        67 ~~~~~~-~~~~~~~~~~~------~~~--~~~---------~~~-------~~------------------------~~-   96 (232)
                      ...... ..++.+..+..      +..  ..+         ++.       ..                        .+ 
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~  161 (526)
T 2pyx_A           82 RQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQ  161 (526)
T ss_dssp             HHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCT
T ss_pred             HHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccc
Confidence            443322 22233221111      000  000         000       00                        00 


Q ss_pred             --CCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhh-hh
Q 044609           97 --RIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV-AQ  170 (232)
Q Consensus        97 --~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~-r~  170 (232)
                        ......+.++|..+.+.|.+.+   .+++++++ +|+++..+++ +.. +.|.+.+|.+++||+||+|||.+|.+ ++
T Consensus       162 ~~~~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~-~~v~~~~g~~i~ad~vV~AdG~~S~~~~~  238 (526)
T 2pyx_A          162 YHFQNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDI-EKLITKQNGEISGQLFIDCTGAKSLLLGE  238 (526)
T ss_dssp             TCCSSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCE-EEEEESSSCEEECSEEEECSGGGCCCCCC
T ss_pred             cCCCCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcE-EEEEECCCCEEEcCEEEECCCcchHHHHH
Confidence              0012346789999999998765   37899999 6999987642 333 57788888789999999999999998 67


Q ss_pred             hhcCCCCccc----ceeEEEEeeecCCC-CCCccceeEEEecCeEEEEEEcCCCe
Q 044609          171 WLGLSESINS----GRSSVRGLAVFPHG-HGLNQDIRQFVGVGFRAGFIPLNDRD  220 (232)
Q Consensus       171 ~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (232)
                      .++.+...+.    ...++......... .+..+..........+++++|++++.
T Consensus       239 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~  293 (526)
T 2pyx_A          239 HLQVPFLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTRK  293 (526)
T ss_dssp             CTCCCEEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSEE
T ss_pred             HhCCCcccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCce
Confidence            7776542221    22233333332211 11122222234455568899998853

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.90  E-value=2.2e-21  Score=160.32  Aligned_cols=219  Identities=15%  Similarity=0.084  Sum_probs=135.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHH--HHhhccCce-eeEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK--LTSVYAPAK-RVFV   78 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~~-~~~~   78 (232)
                      .+||+|||||++|+++|+.|++   .|++|+|||+.+.+ ..+.+..+.+...+.++.+|+.+.  +........ ...+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~-~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR-RIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC-ceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEecccee
Confidence            3699999999999999999999   99999999998644 344577788889999999999875  443332221 1111


Q ss_pred             EEcCC-Cce--eEE-----------------------ec---------------------cCCC----C----------C
Q 044609           79 TNLGT-GAT--QEL-----------------------SY---------------------AGKS----G----------R   97 (232)
Q Consensus        79 ~~~~~-~~~--~~~-----------------------~~---------------------~~~~----~----------~   97 (232)
                      ..+.. +..  ..+                       .+                     ....    .          .
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence            11100 000  000                       00                     0000    0          0


Q ss_pred             C--CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh-hhh
Q 044609           98 I--GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA-QWL  172 (232)
Q Consensus        98 ~--~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r-~~~  172 (232)
                      .  ....+.++|..+.+.|.+.+.  |++++++ +|+++..+++ +.. +.|.+.+|+++.||+||+|||.+|.++ +.+
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~-~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~  237 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDER-GWI-SGVHTKQHGEISGDLFVDCTGFRGLLINQTL  237 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCE-EEEEESSSCEEECSEEEECCGGGCCCCCCCT
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCE-EEEEECCCCEEEcCEEEECCCcchHHHHHHh
Confidence            0  123567899999999988764  8899999 9999987542 444 678888888899999999999999984 566


Q ss_pred             cCCCCc----ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEec
Q 044609          173 GLSESI----NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNRY  228 (232)
Q Consensus       173 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  228 (232)
                      +.+...    .+...++........+....+.......++.+++++|+++ ...+.+++.
T Consensus       238 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~~g~~~~  296 (511)
T 2weu_A          238 GGRFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFK-RDGNGYVYS  296 (511)
T ss_dssp             CCCEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSS-EEEEEEEEC
T ss_pred             CCCCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCC-ceEEEEEEC
Confidence            765322    1222233322333222101222233345556789999988 444444443

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.89  E-value=1e-20  Score=158.11  Aligned_cols=160  Identities=26%  Similarity=0.275  Sum_probs=108.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCcCc-ceeeeecccHHHHHHHcCChHHHHhhccCce--
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL------GIKALVLEKSDGLRAT-GAALTLSPNAWLALDALGVSHKLTSVYAPAK--   74 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~------g~~v~viE~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--   74 (232)
                      +++||+||||||+|+++|+.|++.      |++|+||||.+.++.. .++..+.+++++.|  +   ..+...+.+..  
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l---~~~~~~g~~~~~~  108 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--F---PDWKEKGAPLNTP  108 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--C---TTHHHHTCCCCEE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--H---HHHHhcCCceeee
Confidence            458999999999999999999998      9999999999876542 34556777766654  2   22222333322  


Q ss_pred             --eeEEEEcCCCceeEEec-cC-CCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC
Q 044609           75 --RVFVTNLGTGATQELSY-AG-KSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG  148 (232)
Q Consensus        75 --~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~  148 (232)
                        ...+.+........+++ +. ...  ....+.++|..|.++|.+.+.  +++++++++|+++..+++ +.. +.|.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V-~gV~~~  184 (584)
T 2gmh_A          109 VTEDRFGILTEKYRIPVPILPGLPMN--NHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSV-KGIATN  184 (584)
T ss_dssp             CCEEEEEEECSSCEEECCCCTTSTTC--CTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSE-EEEEEC
T ss_pred             echhheeeeccCCCccccccCccccc--cCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCE-EEEEeC
Confidence              11122222211111221 11 111  233567899999999988764  799999999999987652 332 446665


Q ss_pred             ------CC---------cEEEccEEEecCCCchhhhhhh
Q 044609          149 ------DS---------TIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       149 ------~g---------~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                            +|         .+++||+||+|||.+|.+|+.+
T Consensus       185 ~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l  223 (584)
T 2gmh_A          185 DVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL  223 (584)
T ss_dssp             CEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHH
T ss_pred             CccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHH
Confidence                  33         5799999999999999998876

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.89  E-value=6.8e-21  Score=158.22  Aligned_cols=222  Identities=17%  Similarity=0.122  Sum_probs=138.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHH-HHHHcCChHH--HHhhccCce
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWL-ALDALGVSHK--LTSVYAPAK   74 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~--~~~~~~~~~   74 (232)
                      |++..+||+|||||++|+++|+.|++   .|++|+|||+...+. .+.+..+.+.... .++.+|+.+.  +........
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~   79 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFK   79 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEE
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhh
Confidence            66667899999999999999999999   999999999976443 3447788888888 9999998765  333222221


Q ss_pred             -eeEEEEcCCC------ceeEEecc----------------C-----CCC------------------------CCCCce
Q 044609           75 -RVFVTNLGTG------ATQELSYA----------------G-----KSG------------------------RIGSGL  102 (232)
Q Consensus        75 -~~~~~~~~~~------~~~~~~~~----------------~-----~~~------------------------~~~~~~  102 (232)
                       ++.+..+...      .....++.                .     ..+                        +.....
T Consensus        80 ~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (538)
T 2aqj_A           80 AAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHA  159 (538)
T ss_dssp             CEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCE
T ss_pred             CCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCcc
Confidence             1222111100      00000000                0     000                        002335


Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhh-hhhcCCCCcc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA-QWLGLSESIN  179 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r-~~~~~~~~~~  179 (232)
                      +.+++..+.+.|.+.+.  +++++++ +|+++..+++ +.. +.|.+.+|+++.||+||+|||.+|.+| +.++.....+
T Consensus       160 ~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~-~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~  236 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYI-SNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDM  236 (538)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCE-EEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEEC
T ss_pred             EEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcE-EEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCcccc
Confidence            67999999999988764  7899999 8999987542 333 678888888899999999999999984 4566543222


Q ss_pred             c----ceeEEEEeeecCCCC-CCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          180 S----GRSSVRGLAVFPHGH-GLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       180 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      .    ...++........+. ...+.......++.+++++|++++ ..+.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~g~v~  288 (538)
T 2aqj_A          237 SDYLLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGR-FGSGYVF  288 (538)
T ss_dssp             TTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTE-EEEEEEE
T ss_pred             ccccccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCc-eEEEEEE
Confidence            1    223333222221110 011222223445557889999885 3334444

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.88  E-value=1.6e-20  Score=156.25  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHH-HHHHcCChHH--HHhhccCc-
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWL-ALDALGVSHK--LTSVYAPA-   73 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~--~~~~~~~~-   73 (232)
                      |.+..+||+|||||++|+++|+.|++   .|++|+|||+.+.+. .+.+..+.+++.+ +++.+|+.+.  +....... 
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~   99 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYK   99 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEE
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEE
Confidence            54456899999999999999999999   999999999976543 3456788899999 9999999876  44332222 


Q ss_pred             eeeEEEEcCCC--------------ceeEEecc-----------------------C---------------C-------
Q 044609           74 KRVFVTNLGTG--------------ATQELSYA-----------------------G---------------K-------   94 (232)
Q Consensus        74 ~~~~~~~~~~~--------------~~~~~~~~-----------------------~---------------~-------   94 (232)
                      .+..+..+...              .....++.                       .               .       
T Consensus       100 ~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (550)
T 2e4g_A          100 VAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRL  179 (550)
T ss_dssp             CEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCT
T ss_pred             EeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhh
Confidence            12222211111              00000000                       0               0       


Q ss_pred             CCC-CCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhh-h
Q 044609           95 SGR-IGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV-A  169 (232)
Q Consensus        95 ~~~-~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~-r  169 (232)
                      .+. .....+.+++..+.+.|.+.+.   |++++++ +|+++..+++ +.. +.|.+.+|+++.||+||+|||.+|.+ +
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~-~~v~~~~G~~i~ad~vI~A~G~~S~~~~  256 (550)
T 2e4g_A          180 DGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNI-ESVRTATGRVFDADLFVDCSGFRGLLIN  256 (550)
T ss_dssp             TSCBCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCE-EEEEETTSCEEECSEEEECCGGGCCCCC
T ss_pred             cCCCCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCE-EEEEECCCCEEECCEEEECCCCchhhHH
Confidence            000 0223467899999999988763   7899999 9999987542 443 67888889889999999999999988 6


Q ss_pred             hhhcCCCCcc----cceeEEEEeeecCCCC-CCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          170 QWLGLSESIN----SGRSSVRGLAVFPHGH-GLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       170 ~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      +.++.....+    ....++........+. ...+.......++.+++++|+++. ....+++
T Consensus       257 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~~-~~~g~v~  318 (550)
T 2e4g_A          257 KAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGR-FGTGYVY  318 (550)
T ss_dssp             CCTCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSSE-EEEEEEE
T ss_pred             HHhCCCcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCCc-cceEEEE
Confidence            6677653222    1122222222221110 011222233345566889999883 3344444

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.83  E-value=1.1e-20  Score=150.74  Aligned_cols=190  Identities=16%  Similarity=0.109  Sum_probs=120.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCCh-HH-HHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVS-HK-LTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~-~~~~~~~~~~~~~~~~   81 (232)
                      .||+||||||+|+++|+.|+++  |++|+|+||.+.+...++++.+++++.+.+...++. +. +.....+.....+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            3899999999999999999998  999999999988877788888888776622222222 22 322233333333333 


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                       .+...  ..  ..   ......++|..+.+.|.+.++  +++++++++|++++..               .++.||+||
T Consensus        80 -~g~~~--~~--~~---~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~---------------~~~~ad~vV  136 (381)
T 3c4a_A           80 -HNEPS--LM--ST---GVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL---------------PLADYDLVV  136 (381)
T ss_dssp             -SSSEE--EC--CC---CSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC---------------CGGGCSEEE
T ss_pred             -CCeeE--Ee--cC---CCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc---------------ccccCCEEE
Confidence             22221  11  11   222457899999999998764  7899999988776421               125799999


Q ss_pred             ecCCCchhhhhhh----cCCCCcccceeEEEEeeecCCCCCCccceeEEEecCeE-EEEEEcCCCeEEE
Q 044609          160 GCDGVHSMVAQWL----GLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFR-AGFIPLNDRDVYW  223 (232)
Q Consensus       160 ~A~G~~S~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~  223 (232)
                      +|||.+|. |+.+    +...+...+..+|.+......  . ...+..+.+.+.. +.++|++++...+
T Consensus       137 ~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~g~~~~~~~p~~~~~~~~  201 (381)
T 3c4a_A          137 LANGVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQLFD--Q-MNLVFRTHGKDIFIAHAYKYSDTMSTF  201 (381)
T ss_dssp             ECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSCCS--S-EEEEEEEETTEEEEEEEEECSSSCEEE
T ss_pred             ECCCCCch-HHhhhhhcCCCcccCCccEEEEecCCCCC--c-ceeeEeeCCCcEEEEEEEEecCCeEEE
Confidence            99999999 9887    333333344555555432211  1 1111123334442 2368998877433

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.79  E-value=1.5e-18  Score=142.65  Aligned_cols=146  Identities=21%  Similarity=0.240  Sum_probs=108.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ..+||+|||||++|+++|..|++.|++|+|||+.+.++. .....+.+.+.+.++.+|+.+....               
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~~~~~l~~~g~~~~~~~---------------  154 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRALGAKKFYGR---------------  154 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHHHHHHHHTTTHHHHCTT---------------
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChhHHHHHHHcCCcccccc---------------
Confidence            358999999999999999999999999999999877643 3456677888888888876542100               


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe--C-CC--cEEEcc
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL--G-DS--TIIKAK  156 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~-~g--~~~~a~  156 (232)
                             +.      ......+.+..+.+.|.+.+.  +++++++++|+++..+++++.. +.|.+  . +|  .++.||
T Consensus       155 -------~~------~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~-~~v~~~~~~~g~~~~i~ad  220 (497)
T 2bry_A          155 -------FC------TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSG-WRAQLQPNPPAQLASYEFD  220 (497)
T ss_dssp             -------TT------CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCC-BEEEEESCCCHHHHTCCBS
T ss_pred             -------cc------ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCE-EEEEEEECCCCCEEEEEcC
Confidence                   00      111225677888888877653  7999999999999875211333 56665  4 66  479999


Q ss_pred             EEEecCCCchhhhhhhcCCCCcc
Q 044609          157 VLIGCDGVHSMVAQWLGLSESIN  179 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~~~~~  179 (232)
                      +||+|||.+|.+|+..+....+.
T Consensus       221 ~VV~A~G~~S~~r~~~~~~~~g~  243 (497)
T 2bry_A          221 VLISAAGGKFVPEGFTIREMRGK  243 (497)
T ss_dssp             EEEECCCTTCCCTTCEEEEEECS
T ss_pred             EEEECCCCCcccccccchhhcCc
Confidence            99999999999988776554443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.77  E-value=7.9e-17  Score=127.52  Aligned_cols=71  Identities=18%  Similarity=0.346  Sum_probs=57.1

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCCCch-hhhhhh-cCC
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDGVHS-MVAQWL-GLS  175 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G~~S-~~r~~~-~~~  175 (232)
                      ...++...+.+.|.+.+.  |++++++++|++++.++  +.. +.|.+.+|  .++.||.||+|+|.+| .+.+.+ |.+
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRP--EGG-FELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECT--TSS-EEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC--Cce-EEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            346778888888887764  89999999999999875  333 66888888  3899999999999998 566777 765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.76  E-value=1.2e-16  Score=127.97  Aligned_cols=173  Identities=19%  Similarity=0.181  Sum_probs=99.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC---cceeee-e----ccc-H-HHHHHHcCChHHHHhh-
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA---TGAALT-L----SPN-A-WLALDALGVSHKLTSV-   69 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~---~~~~~~-~----~~~-~-~~~l~~~g~~~~~~~~-   69 (232)
                      |+ +++||+|||||++|+++|+.|+++|++|+||||.+....   ++.... +    ... . ....+.+.++..+.+. 
T Consensus         1 M~-~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (397)
T 2oln_A            1 MT-ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRC   79 (397)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHh
Confidence            44 358999999999999999999999999999999876531   111111 1    000 0 0011112222222211 


Q ss_pred             ccCc---eeeEEEEcCCC------------------ce-eEEe-------ccCC------CCCCCCceeeeehHHHHHHH
Q 044609           70 YAPA---KRVFVTNLGTG------------------AT-QELS-------YAGK------SGRIGSGLRSVHRQSLLEAL  114 (232)
Q Consensus        70 ~~~~---~~~~~~~~~~~------------------~~-~~~~-------~~~~------~~~~~~~~~~~~~~~l~~~l  114 (232)
                      ....   .+.........                  .. ..++       ++..      .+.+.+....+++..+.+.|
T Consensus        80 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l  159 (397)
T 2oln_A           80 ERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAAL  159 (397)
T ss_dssp             TCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHH
T ss_pred             CccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHH
Confidence            1110   01111111110                  00 0000       0000      00011233467778888888


Q ss_pred             hhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCCCCcc
Q 044609          115 ADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLSESIN  179 (232)
Q Consensus       115 ~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~~~~~  179 (232)
                      .+.+.  +++++++++|++++.++   .. +.|.+.++ +++||.||+|+|.+| .+++.++...|..
T Consensus       160 ~~~a~~~Gv~i~~~~~V~~i~~~~---~~-v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~p~~  222 (397)
T 2oln_A          160 FTLAQAAGATLRAGETVTELVPDA---DG-VSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGARLAYS  222 (397)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEET---TE-EEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCCCCEE
T ss_pred             HHHHHHcCCEEECCCEEEEEEEcC---Ce-EEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCCCCee
Confidence            77653  79999999999998764   34 66777665 699999999999995 5777777655543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.76  E-value=2.1e-17  Score=132.57  Aligned_cols=117  Identities=10%  Similarity=-0.008  Sum_probs=76.5

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCCCCc
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLSESI  178 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~~~~  178 (232)
                      ...++...+.+.|.+.+.  +++++++++|+++..++  +.. +.|.+.+| ++.||.||+|+|.+| .+++.++...+.
T Consensus       168 ~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~  243 (405)
T 2gag_B          168 AGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG--EKV-TGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPI  243 (405)
T ss_dssp             CBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBE-EEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCE
T ss_pred             CccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEE-EEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCc
Confidence            345667788888877664  89999999999998764  444 67888887 699999999999998 678888876655


Q ss_pred             ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEEEEe
Q 044609          179 NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWFLNR  227 (232)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  227 (232)
                      ......+........  ...   ..++..+..+++.|.+++.+.+....
T Consensus       244 ~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~y~~p~~~g~~~ig~~~  287 (405)
T 2gag_B          244 QSHPLQALVSELFEP--VHP---TVVMSNHIHVYVSQAHKGELVMGAGI  287 (405)
T ss_dssp             EEEEEEEEEEEEBCS--CCC---SEEEETTTTEEEEECTTSEEEEEEEE
T ss_pred             cccceeEEEecCCcc--ccC---ceEEeCCCcEEEEEcCCCcEEEEecc
Confidence            433222221111111  111   12233334467789888876665443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.75  E-value=8.3e-18  Score=136.39  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCc---eEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSS---KIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~---~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ..++...+.+.|.+.+.  |+++++++   +|+++..++  +.. ..|.+.+|+++.||.||+|+|.+|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v-~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDV-KGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEE-EEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeE-EEEEECCCCEEECCEEEECCCCChh
Confidence            57778888988887764  89999999   999998764  342 4489999988999999999999984

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.74  E-value=5.1e-17  Score=129.42  Aligned_cols=74  Identities=9%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEE-EEeCCCcEEEccEEEecCCCch-hhhhhhcCC--
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAI-INLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS--  175 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~-v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~--  175 (232)
                      ...+++..+.+.|.+.+.  +++++++++|+++..++  +.  +. |.+.+| +++||.||+|+|.+| .+.+.++..  
T Consensus       143 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~--v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~  217 (382)
T 1y56_B          143 DGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NE--IKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTK  217 (382)
T ss_dssp             CCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SB--EEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSC
T ss_pred             CeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CE--EEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcC
Confidence            345778888888887664  79999999999998764  33  44 888777 799999999999998 567777765  


Q ss_pred             CCccc
Q 044609          176 ESINS  180 (232)
Q Consensus       176 ~~~~~  180 (232)
                      .|..+
T Consensus       218 ~~~~~  222 (382)
T 1y56_B          218 IPIEP  222 (382)
T ss_dssp             CCCEE
T ss_pred             cCCCe
Confidence            55443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.74  E-value=4.1e-17  Score=131.03  Aligned_cols=153  Identities=22%  Similarity=0.283  Sum_probs=93.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----ceee---ee---cc---------cHHHHHHHcC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAAL---TL---SP---------NAWLALDALG   61 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~~~~---~~---~~---------~~~~~l~~~g   61 (232)
                      |.++++||+|||||++|+++|+.|+++|++|+|+|+.+.++..    +.+.   ..   .+         .....+.++.
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~  102 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYR  102 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSC
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcC
Confidence            4456789999999999999999999999999999999876321    1110   00   00         0112233332


Q ss_pred             ChHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCC
Q 044609           62 VSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNG  139 (232)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g  139 (232)
                      ..+.+.. ... .+........+               .......+..+.+.|.+.+.  +++++++++|+++..++   
T Consensus       103 ~~~~~~~-~~~-~Gi~~~~~~~g---------------~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~---  162 (417)
T 3v76_A          103 PQDFVAL-VER-HGIGWHEKTLG---------------QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA---  162 (417)
T ss_dssp             HHHHHHH-HHH-TTCCEEECSTT---------------EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET---
T ss_pred             HHHHHHH-HHH-cCCCcEEeeCC---------------EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC---
Confidence            1111100 000 00111111111               00112345677777777664  89999999999998764   


Q ss_pred             CccEEEEeCCCcEEEccEEEecCCCch-----------hhhhhhcCC
Q 044609          140 SSAAIINLGDSTIIKAKVLIGCDGVHS-----------MVAQWLGLS  175 (232)
Q Consensus       140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S-----------~~r~~~~~~  175 (232)
                      .. +.|.+.+| ++.||.||+|+|.+|           .+.+.+|..
T Consensus       163 ~~-~~V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          163 SG-FRVTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             TE-EEEEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             CE-EEEEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence            44 78888888 799999999999998           356666654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.74  E-value=1.5e-17  Score=138.50  Aligned_cols=172  Identities=15%  Similarity=0.058  Sum_probs=95.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc-CcceeeeecccHHHHHHHcCC--h-H------HHHhhc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAALTLSPNAWLALDALGV--S-H------KLTSVY   70 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~-~~~~~~~~~~~~~~~l~~~g~--~-~------~~~~~~   70 (232)
                      |.+.++||+|||||++|+++|+.|+++|++|+|+||.+... .+++...+...+.+.++.++.  . +      .+....
T Consensus        14 m~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~a   93 (561)
T 3da1_A           14 MSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENA   93 (561)
T ss_dssp             HTTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHHHC
T ss_pred             ccCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence            34456999999999999999999999999999999986542 222222232233333322111  0 0      000000


Q ss_pred             cCce-e---------------------eEEEEcCCCce-----eEEe-------ccCCCC-----CCCCceeeeehHHHH
Q 044609           71 APAK-R---------------------VFVTNLGTGAT-----QELS-------YAGKSG-----RIGSGLRSVHRQSLL  111 (232)
Q Consensus        71 ~~~~-~---------------------~~~~~~~~~~~-----~~~~-------~~~~~~-----~~~~~~~~~~~~~l~  111 (232)
                      ..+. .                     ...+....+..     ..++       ++....     ...+....++...+.
T Consensus        94 p~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~~l~  173 (561)
T 3da1_A           94 PHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLT  173 (561)
T ss_dssp             TTTCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHHHHH
T ss_pred             chhccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHHHHH
Confidence            0000 0                     00000000000     0000       000000     001112356778888


Q ss_pred             HHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEecCCCch-hhhhhhcCC
Q 044609          112 EALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIGCDGVHS-MVAQWLGLS  175 (232)
Q Consensus       112 ~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~A~G~~S-~~r~~~~~~  175 (232)
                      ..|.+.+.  |++++.+++|+++..++  +.. +.|.+.+   |  .+++||.||+|+|.|| .+++.++..
T Consensus       174 ~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v-~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          174 LEIMKEAVARGAVALNYMKVESFIYDQ--GKV-VGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEEcC--CeE-EEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            88887663  89999999999998864  443 5565543   3  3799999999999998 677777754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.73  E-value=3.3e-17  Score=130.38  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhhhhcCC
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQWLGLS  175 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~~~~~~  175 (232)
                      ...++...+.+.|.+.+.  |++++++++|+++..++   .. +.|.+.+| ++.||.||+|+|.+| .+.+.++..
T Consensus       148 ~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~---~~-~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          148 GADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVD---GA-WEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEET---TE-EEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             CceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC---Ce-EEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence            456788899998888764  89999999999998864   44 78888887 799999999999998 566777765

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.73  E-value=3.6e-16  Score=124.76  Aligned_cols=170  Identities=18%  Similarity=0.218  Sum_probs=98.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--Ccc-e--eee---ecc--cHHH-HHHHcCChHHHHhhcc-
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATG-A--ALT---LSP--NAWL-ALDALGVSHKLTSVYA-   71 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~-~--~~~---~~~--~~~~-~l~~~g~~~~~~~~~~-   71 (232)
                      +++||+|||||++|+++|+.|+++|++|+|||+.....  ..+ .  ++.   +..  ...+ ..+.+..+..+.+... 
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   81 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999999987653  111 1  111   100  1111 1111112222222110 


Q ss_pred             C---ceeeEEEEcC-C--------------Cce-eEEe-------ccCCC------CCCCCceeeeehHHHHHHHhhhCC
Q 044609           72 P---AKRVFVTNLG-T--------------GAT-QELS-------YAGKS------GRIGSGLRSVHRQSLLEALADELP  119 (232)
Q Consensus        72 ~---~~~~~~~~~~-~--------------~~~-~~~~-------~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~  119 (232)
                      .   ..+....... .              +.. ..++       ++...      +.+.+....+++..+.+.|.+.+.
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence            0   0111111111 0              000 0000       01000      001122346778888888888764


Q ss_pred             --CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCc
Q 044609          120 --DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESI  178 (232)
Q Consensus       120 --~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~  178 (232)
                        +++++++++|++++.++   .. +.|.+.+| +++||.||+|+|.+|. +.+.++...+.
T Consensus       162 ~~Gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g~~~pl  218 (389)
T 2gf3_A          162 ARGAKVLTHTRVEDFDISP---DS-VKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIPL  218 (389)
T ss_dssp             HTTCEEECSCCEEEEEECS---SC-EEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECCC
T ss_pred             HCCCEEEcCcEEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCccHHHHhhhhccCCce
Confidence              78999999999998864   33 67777766 6999999999999984 45555543443

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.71  E-value=7.7e-17  Score=129.44  Aligned_cols=169  Identities=18%  Similarity=0.143  Sum_probs=93.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCc-ce--eeee-cccH------HHHHHHcCChHHHHhh--
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRAT-GA--ALTL-SPNA------WLALDALGVSHKLTSV--   69 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~-~~--~~~~-~~~~------~~~l~~~g~~~~~~~~--   69 (232)
                      .++||+|||||++|+++|+.|+++  |++|+|||+....... ++  +..+ .+..      ....+.+.++......  
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  114 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK  114 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCC
Confidence            358999999999999999999999  9999999998654322 11  2112 1110      0011111111110000  


Q ss_pred             ccCce--eeEEEEcCCCceeEEec----------------cC-CCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCce
Q 044609           70 YAPAK--RVFVTNLGTGATQELSY----------------AG-KSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSK  128 (232)
Q Consensus        70 ~~~~~--~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~  128 (232)
                      ...+.  +.............++.                .. ..+.+.+....+++..+.+.|.+.+.  +++++++++
T Consensus       115 ~~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~  194 (405)
T 3c4n_A          115 TLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR  194 (405)
T ss_dssp             CCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE
T ss_pred             CCcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            01111  11000000000000000                00 00001223446788889998887764  789999999


Q ss_pred             EE---------EEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch-hhhh-hhcCCCC
Q 044609          129 IA---------AIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS-MVAQ-WLGLSES  177 (232)
Q Consensus       129 v~---------~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S-~~r~-~~~~~~~  177 (232)
                      |+         ++..++   .. +.|.+.+| +++||.||+|+|.+| .+++ .++...+
T Consensus       195 v~~~~g~~~~~~i~~~~---~~-v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~~~  249 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTN---TH-QIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLHTR  249 (405)
T ss_dssp             EEEETTEEEEECBCC-----------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCCCC
T ss_pred             EEeccccccccceEeeC---Ce-EEEEECCc-EEECCEEEECCCccHHHHHHHhcCCCCC
Confidence            99         886653   33 56666666 799999999999999 6777 7877654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.71  E-value=2.1e-16  Score=125.84  Aligned_cols=110  Identities=12%  Similarity=0.029  Sum_probs=71.8

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCcc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESIN  179 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~~  179 (232)
                      ..+++..+.+.|.+.+.  +++++++++|+++..++   .. +.|.+.+| ++.||.||+|+|.+|. +.+.++...+..
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~  233 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG---EA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFL  233 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS---SS-EEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCE
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC---CE-EEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCcee
Confidence            45677888888887764  78999999999998764   33 67777777 7999999999999986 777777654433


Q ss_pred             cceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCCeEEEE
Q 044609          180 SGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDRDVYWF  224 (232)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  224 (232)
                      +...... .+..+.. .. . . .++.+  ..+++|.+++.+.+.
T Consensus       234 ~~~g~~~-~~~~~~~-~~-~-~-~~~~~--~~~~~p~~~g~~~vG  271 (382)
T 1ryi_A          234 PVKGECL-SVWNDDI-PL-T-K-TLYHD--HCYIVPRKSGRLVVG  271 (382)
T ss_dssp             EEEEEEE-EEECCSS-CC-C-S-EEEET--TEEEEECTTSEEEEE
T ss_pred             ccceEEE-EECCCCC-Cc-c-c-eEEcC--CEEEEEcCCCeEEEe
Confidence            3222221 1222211 11 1 1 22333  256789888765443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.70  E-value=2.8e-16  Score=127.70  Aligned_cols=164  Identities=20%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC----cceeeeecc---cHHHHHHHcCChHHHHhh----cc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA----TGAALTLSP---NAWLALDALGVSHKLTSV----YA   71 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~----~~~~~~~~~---~~~~~l~~~g~~~~~~~~----~~   71 (232)
                      .+++||+|||||++|+++|+.|+++|.+|+||||.+.++.    ++.+.....   .....++.++....+...    ..
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN  103 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcC
Confidence            3568999999999999999999999999999999876531    111111000   011222222111110000    00


Q ss_pred             CceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC
Q 044609           72 PAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD  149 (232)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~  149 (232)
                      ......+ ....+..  +... ..+...+  .......+.+.|.+.+.  +++++++++|+++..++  +.. +.|.+.+
T Consensus       104 ~~~~~~~-~~~~G~~--~~~~-~~g~~~p--~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v-~~V~~~~  174 (447)
T 2i0z_A          104 NEDIITF-FENLGVK--LKEE-DHGRMFP--VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQT-KAVILQT  174 (447)
T ss_dssp             HHHHHHH-HHHTTCC--EEEC-GGGEEEE--TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETT
T ss_pred             HHHHHHH-HHhcCCc--eEEe-eCCEEEC--CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcE-EEEEECC
Confidence            0000000 0000000  0000 0000000  00124566777766553  89999999999998754  444 7788888


Q ss_pred             CcEEEccEEEecCCCch-----------hhhhhhcCC
Q 044609          150 STIIKAKVLIGCDGVHS-----------MVAQWLGLS  175 (232)
Q Consensus       150 g~~~~a~~vV~A~G~~S-----------~~r~~~~~~  175 (232)
                      |++++||.||+|+|.+|           .+++.+|..
T Consensus       175 G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          175 GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             CCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            88899999999999999           778888765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.70  E-value=4.3e-16  Score=132.66  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=97.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC--cce-eeeecc------------------cHHHHHHHcCChH
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA--TGA-ALTLSP------------------NAWLALDALGVSH   64 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~--~~~-~~~~~~------------------~~~~~l~~~g~~~   64 (232)
                      +||+|||||++|+++|+.|+++|++|+|||+...++.  ++. +-.+.+                  .+.+.++.+++..
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPVKF  352 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCCCc
Confidence            7999999999999999999999999999999765531  111 111111                  0222233322110


Q ss_pred             H---------------------HHhhccCceeeEEEEcCCCce-eEEeccC-CCCCCCCceeeeehHHHHHHHhhhCC--
Q 044609           65 K---------------------LTSVYAPAKRVFVTNLGTGAT-QELSYAG-KSGRIGSGLRSVHRQSLLEALADELP--  119 (232)
Q Consensus        65 ~---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--  119 (232)
                      .                     +.....+.......  ..... ...+... ..+.+.+....++...+.+.|.+.+.  
T Consensus       353 ~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l--~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~  430 (676)
T 3ps9_A          353 DHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAV--EANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQ  430 (676)
T ss_dssp             CEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEE--CHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHHT
T ss_pred             CcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhC--CHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHhC
Confidence            0                     00000000000000  00000 0000010 01111233456788899998887764  


Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcC
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGL  174 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~  174 (232)
                      |++++++++|+++..++   .. +.|.+.+|.++.||.||+|+|.+|. +.+..+.
T Consensus       431 Gv~i~~~t~V~~l~~~~---~~-v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~l  482 (676)
T 3ps9_A          431 GLQIYYQYQLQNFSRKD---DC-WLLNFAGDQQATHSVVVLANGHQISRFSQTSTL  482 (676)
T ss_dssp             TCEEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECCGGGGGCSTTTTTC
T ss_pred             CCEEEeCCeeeEEEEeC---Ce-EEEEECCCCEEECCEEEECCCcchhccccccCC
Confidence            89999999999999874   44 8888888888999999999999985 4444443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.69  E-value=5.1e-16  Score=123.19  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce---e--ee---ecc--cHHH-HHHHcCChHHHHhhcc--
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA---A--LT---LSP--NAWL-ALDALGVSHKLTSVYA--   71 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~---~--~~---~~~--~~~~-~l~~~g~~~~~~~~~~--   71 (232)
                      ++||+|||||++|+++|+.|+++|++|+|||+.......+.   +  +.   +..  ...+ ..+.+.++..+.....  
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   81 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNEDD   81 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999999876532111   0  11   110  0000 1111111222220000  


Q ss_pred             -C--ceeeEEEEcCCC--------------c-eeEEe-------ccCC------CCCCCCceeeeehHHHHHHHhhhCC-
Q 044609           72 -P--AKRVFVTNLGTG--------------A-TQELS-------YAGK------SGRIGSGLRSVHRQSLLEALADELP-  119 (232)
Q Consensus        72 -~--~~~~~~~~~~~~--------------~-~~~~~-------~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~-  119 (232)
                       .  ..+.........              . ...++       ++..      .+.+.+....+++..+.+.|.+.+. 
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  161 (372)
T 2uzz_A           82 PIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKE  161 (372)
T ss_dssp             CSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHHH
T ss_pred             cceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHHH
Confidence             0  001111110000              0 00010       0000      0111233456788888888887764 


Q ss_pred             -CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          120 -DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       120 -~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                       +++++++++|++++.++   .. +.|.+.+|+ ++||.||+|+|.+|.
T Consensus       162 ~G~~i~~~~~V~~i~~~~---~~-~~v~~~~g~-~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          162 AGCAQLFNCPVTAIRHDD---DG-VTIETADGE-YQAKKAIVCAGTWVK  205 (372)
T ss_dssp             TTCEEECSCCEEEEEECS---SS-EEEEESSCE-EEEEEEEECCGGGGG
T ss_pred             CCCEEEcCCEEEEEEEcC---CE-EEEEECCCe-EEcCEEEEcCCccHH
Confidence             78999999999998764   33 778887775 999999999999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.69  E-value=5.3e-16  Score=132.31  Aligned_cols=70  Identities=16%  Similarity=0.056  Sum_probs=54.9

Q ss_pred             ceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEEecCCCchh-hhhhhcC
Q 044609          101 GLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLIGCDGVHSM-VAQWLGL  174 (232)
Q Consensus       101 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV~A~G~~S~-~r~~~~~  174 (232)
                      ....++...+.+.|.+.+.  |++++++++|+++..++   .. +.|.+.+|. ++.||.||+|+|.+|. +.+.++.
T Consensus       405 ~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~---~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~l  478 (689)
T 3pvc_A          405 AGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRID---SQ-WQLTFGQSQAAKHHATVILATGHRLPEWEQTHHL  478 (689)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS---SS-EEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTS
T ss_pred             CCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC---Ce-EEEEeCCCcEEEECCEEEECCCcchhccccccCC
Confidence            3456788889998887764  89999999999999874   34 788888887 8999999999999985 4444443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.69  E-value=1.2e-15  Score=125.59  Aligned_cols=112  Identities=14%  Similarity=0.026  Sum_probs=70.5

Q ss_pred             eeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchh-hhhh-hc
Q 044609          103 RSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSM-VAQW-LG  173 (232)
Q Consensus       103 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~-~r~~-~~  173 (232)
                      ..+++..+...|.+.+.  |++++.+++|+++..++   .. +.|.+   .+|+  +++||.||+|+|.+|. +++. ++
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~---~~-~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~  219 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGGEVLTRTRATSARREN---GL-WIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMH  219 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET---TE-EEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTC
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhcc
Confidence            45788899998887764  89999999999998763   33 66666   3565  7999999999999985 4553 54


Q ss_pred             CC--CCcccceeEEEEeeecCCCCCCccceeEEE--ecCeEEEEEEcCCCeEEE
Q 044609          174 LS--ESINSGRSSVRGLAVFPHGHGLNQDIRQFV--GVGFRAGFIPLNDRDVYW  223 (232)
Q Consensus       174 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~  223 (232)
                      ..  .+..+....+. .+.  ...+  .....++  .++..++++|..++.+.+
T Consensus       220 ~~~~~~i~p~rG~~~-~~~--~~~~--~~~~~~~~~~dg~~~~~~P~~~g~~~i  268 (501)
T 2qcu_A          220 LPSPYGIRLIKGSHI-VVP--RVHT--QKQAYILQNEDKRIVFVIPWMDEFSII  268 (501)
T ss_dssp             CCCSSCBCCEEEEEE-EEE--CSSS--CSCEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCcccccccceeEEE-EEC--CCCC--CceEEEeecCCCCEEEEEEcCCCcEEE
Confidence            32  22222221111 122  1111  1122233  355667888998776443

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.68  E-value=6.7e-16  Score=127.42  Aligned_cols=140  Identities=16%  Similarity=0.330  Sum_probs=89.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce------------------------eee----e-------
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA------------------------ALT----L-------   49 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~------------------------~~~----~-------   49 (232)
                      ++||+||||||+|+++|+.|++.|++|+|||+.+.+.....                        +..    +       
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            47999999999999999999999999999999875421100                        000    0       


Q ss_pred             ---cccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEE
Q 044609           50 ---SPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQ  124 (232)
Q Consensus        50 ---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~  124 (232)
                         .....+.+...|....                       +.+.   .  .+.........+.+.|.+.+.  +++++
T Consensus       187 ~~~~~~v~~~~~~~G~~~~-----------------------i~~~---~--~p~~G~~~~~~l~~~L~~~l~~~Gv~I~  238 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEE-----------------------ILYV---S--KPHIGTFKLVTMIEKMRATIIELGGEIR  238 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGG-----------------------GGTB---S--SCCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             cccHHHHHHHHHHcCCCce-----------------------Eeec---c--ccccccchHHHHHHHHHHHHHhcCCEEE
Confidence               0000000111110000                       0000   0  111112345666777766553  89999


Q ss_pred             eCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh----hhhhhcCC
Q 044609          125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM----VAQWLGLS  175 (232)
Q Consensus       125 ~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~----~r~~~~~~  175 (232)
                      ++++|+++..++  +.. +.|.+.+|+++.||.||+|+|++|.    +.+..++.
T Consensus       239 ~~t~V~~I~~~~--~~v-~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          239 FSTRVDDLHMED--GQI-TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             SSCCEEEEEESS--SBE-EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             eCCEEEEEEEeC--CEE-EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCC
Confidence            999999998865  444 6688899999999999999999984    33444554

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.67  E-value=6.9e-16  Score=118.07  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=85.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcce-------eeeecccHHHHHHHcCChHHHHhhccCcee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGA-------ALTLSPNAWLALDALGVSHKLTSVYAPAKR   75 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~   75 (232)
                      .++||+|||||++|+++|+.|+++ |++|+||||.+.++....       .+.......+.++++|+.         ...
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~---------~~~  108 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA---------YDE  108 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC---------CEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCC---------ccc
Confidence            458999999999999999999997 999999999876632110       111222233444443321         100


Q ss_pred             eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeC----
Q 044609           76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLG----  148 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~----  148 (232)
                             .+           .    .....++..+.+.|.+.+   .+++++++++|+++..++  +.. ..|.+.    
T Consensus       109 -------~~-----------~----~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v-~gv~~~~~~~  163 (284)
T 1rp0_A          109 -------QD-----------T----YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRV-GGVVTNWALV  163 (284)
T ss_dssp             -------CS-----------S----EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEE-EEEEEEEHHH
T ss_pred             -------CC-----------C----EEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeE-EEEEEecccc
Confidence                   00           0    001124556666665543   378999999999998764  332 334331    


Q ss_pred             -----CC-----cEEEccEEEecCCCchhhhh
Q 044609          149 -----DS-----TIIKAKVLIGCDGVHSMVAQ  170 (232)
Q Consensus       149 -----~g-----~~~~a~~vV~A~G~~S~~r~  170 (232)
                           ++     .++.||.||+|+|..|.++.
T Consensus       164 ~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~  195 (284)
T 1rp0_A          164 AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGA  195 (284)
T ss_dssp             HTCTTTSSCCCCEEEEEEEEEECCCSSSTTTT
T ss_pred             ccccCccccCceEEEECCEEEECCCCchHHHH
Confidence                 32     47999999999999887654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.66  E-value=1.5e-15  Score=122.81  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc-c---eeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT-G---AALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~-~---~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (232)
                      |.+||+||||||+|+++|+.|+++|++|+|||+.+..... +   ........+...++.+|+.. ......+.......
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~~~~   99 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNE-WPSEEFGYFGHYYY   99 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCC-SCHHHHCEEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhh-hhhhcccccceeEE
Confidence            5589999999999999999999999999999998743221 1   12234455667777776522 11223344455554


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                      ..... .  ..+....   ......+++..+.+.|.+.+.  ++++++.. +   ....  ... .        ...+|+
T Consensus       100 ~~~~~-~--~~~~~~~---~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~-v---~~~~--l~~-~--------~~~ad~  158 (430)
T 3ihm_A          100 VGGPQ-P--MRFYGDL---KAPSRAVDYRLYQPMLMRALEARGGKFCYDA-V---SAED--LEG-L--------SEQYDL  158 (430)
T ss_dssp             ECSSS-C--EEEEEEE---EEEEBEECHHHHHHHHHHHHHHTTCEEEECC-C---CGGG--HHH-H--------HTTSSE
T ss_pred             ECCCC-c--cccchhc---CCcceeecHHHHHHHHHHHHHHcCCEEEEEe-c---chhh--hhh-h--------cccCCE
Confidence            43222 1  1111110   112356788888888887663  66666521 1   0010  000 0        125899


Q ss_pred             EEecCCCchhhhhh
Q 044609          158 LIGCDGVHSMVAQW  171 (232)
Q Consensus       158 vV~A~G~~S~~r~~  171 (232)
                      ||+|||.+|.++..
T Consensus       159 VV~AdG~~S~~~~~  172 (430)
T 3ihm_A          159 LVVCTGKYALGKVF  172 (430)
T ss_dssp             EEECCCCTTGGGGS
T ss_pred             EEECCCCcchHHhc
Confidence            99999999987643

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.65  E-value=1.3e-15  Score=121.81  Aligned_cols=141  Identities=21%  Similarity=0.260  Sum_probs=84.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----ceee---ee---ccc---------HHHHHHHcCChH
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAAL---TL---SPN---------AWLALDALGVSH   64 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~~~~---~~---~~~---------~~~~l~~~g~~~   64 (232)
                      +++||+|||||++|+++|+.|+++|.+|+|+||.+.++..    +.+.   ..   .+.         ....+..+...+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            5699999999999999999999999999999998865321    1010   00   000         001111111100


Q ss_pred             H---HHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCC-
Q 044609           65 K---LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLN-  138 (232)
Q Consensus        65 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~-  138 (232)
                      .   +...+.+     +.....+  ..++         .   . .+..+.+.|.+.+.  +++++++++|+++..+++. 
T Consensus        83 ~~~~~~~~Gi~-----~~~~~~g--~~~p---------~---~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~  142 (401)
T 2gqf_A           83 FISLVAEQGIT-----YHEKELG--QLFC---------D---E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDE  142 (401)
T ss_dssp             HHHHHHHTTCC-----EEECSTT--EEEE---------T---T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCS
T ss_pred             HHHHHHhCCCc-----eEECcCC--EEcc---------C---C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcC
Confidence            0   0111111     1100000  0000         0   0 45667777766654  8999999999999865100 


Q ss_pred             CCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          139 GSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       139 g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      +.. +.|.+.++ +++||.||+|+|.+|
T Consensus       143 ~~~-~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          143 KVR-FVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             SCC-EEEEETTE-EEEESEEEECCCCSS
T ss_pred             CCe-EEEEECCC-EEECCEEEECCCCcc
Confidence            023 77777777 799999999999998

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.64  E-value=8.6e-16  Score=120.20  Aligned_cols=123  Identities=18%  Similarity=0.297  Sum_probs=85.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |.++++||+|||||++|+++|..|++.|++|+|||+.+.++..            ....           .+..  ..  
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~------------~~~~-----------~~~~--~~--   53 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQ------------LTAL-----------YPEK--YI--   53 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHH------------HHHT-----------CTTS--EE--
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCe------------eecc-----------CCCc--ee--
Confidence            5566799999999999999999999999999999998765211            0000           0000  00  


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                              ....   +     ...+.+..+.+.+.+.+.  +++++++++|+++..++   .. +.|.+.+|.++.+|.|
T Consensus        54 --------~~~~---~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~l  113 (335)
T 2zbw_A           54 --------YDVA---G-----FPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREG---DL-FKVTTSQGNAYTAKAV  113 (335)
T ss_dssp             --------CCST---T-----CSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEET---TE-EEEEETTSCEEEEEEE
T ss_pred             --------eccC---C-----CCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECC---CE-EEEEECCCCEEEeCEE
Confidence                    0000   0     012456667776665543  67899999999998764   34 7888888888999999


Q ss_pred             EecCCCchhhhh
Q 044609          159 IGCDGVHSMVAQ  170 (232)
Q Consensus       159 V~A~G~~S~~r~  170 (232)
                      |+|+|..|...+
T Consensus       114 v~AtG~~~~~p~  125 (335)
T 2zbw_A          114 IIAAGVGAFEPR  125 (335)
T ss_dssp             EECCTTSEEEEC
T ss_pred             EECCCCCCCCCC
Confidence            999999764433

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.64  E-value=1e-15  Score=124.51  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEe---------------cCCCCCccEEEEeCCCcEE--EccEEEecC
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDS---------------QTLNGSSAAIINLGDSTII--KAKVLIGCD  162 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~---------------~~~~g~~~~~v~~~~g~~~--~a~~vV~A~  162 (232)
                      ...++...+.+.|.+.+.  +++++++++|+++..               ++  +.. +.|.+.+| ++  .||.||+|+
T Consensus       175 ~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v-~~V~t~~g-~i~~~Ad~VV~At  250 (448)
T 3axb_A          175 AGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARA-SAAVLSDG-TRVEVGEKLVVAA  250 (448)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEE-EEEEETTS-CEEEEEEEEEECC
T ss_pred             CeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--Cce-EEEEeCCC-EEeecCCEEEECC
Confidence            455677888888887764  899999999999987               32  232 56778888 58  999999999


Q ss_pred             CCchh-hhhhhcCCCCccc
Q 044609          163 GVHSM-VAQWLGLSESINS  180 (232)
Q Consensus       163 G~~S~-~r~~~~~~~~~~~  180 (232)
                      |.+|. +.+.++...+..+
T Consensus       251 G~~s~~l~~~~g~~~~~~p  269 (448)
T 3axb_A          251 GVWSNRLLNPLGIDTFSRP  269 (448)
T ss_dssp             GGGHHHHHGGGTCCCSEEE
T ss_pred             CcCHHHHHHHcCCCCcccc
Confidence            99986 6777776555443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.63  E-value=1.6e-15  Score=112.71  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=84.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      |+++||+|||||++|+.+|..|++.|.+|+|||+.....  +  ....+..    ..+. ...+..              
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~--G--~~~~~~~----~~~~-~~~~~~--------------   57 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV--M--MPFLPPK----PPFP-PGSLLE--------------   57 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT--T--CCSSCCC----SCCC-TTCHHH--------------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC--C--cccCccc----cccc-hhhHHh--------------
Confidence            356899999999999999999999999999999974211  1  1111100    0000 000000              


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                           .++  ...   .+     ++..+.+.|.+.+   ++++++ +++|+++..++  +.. +.|.+.+|.++.||+||
T Consensus        58 -----~~~--d~~---g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v-~~v~~~~g~~i~a~~VV  118 (232)
T 2cul_A           58 -----RAY--DPK---DE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG--NRV-VGVRTWEGPPARGEKVV  118 (232)
T ss_dssp             -----HHC--CTT---CC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEE-EEEEETTSCCEECSEEE
T ss_pred             -----hhc--cCC---CC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEE-EEEEECCCCEEECCEEE
Confidence                 000  001   11     5667777776654   367777 57999998764  343 56788888889999999


Q ss_pred             ecCCCchhhhhhhcC
Q 044609          160 GCDGVHSMVAQWLGL  174 (232)
Q Consensus       160 ~A~G~~S~~r~~~~~  174 (232)
                      +|+|.+|..+..+|.
T Consensus       119 ~A~G~~s~~~~~~G~  133 (232)
T 2cul_A          119 LAVGSFLGARLFLGG  133 (232)
T ss_dssp             ECCTTCSSCEEEETT
T ss_pred             ECCCCChhhceecCC
Confidence            999999876655543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=9.5e-16  Score=120.73  Aligned_cols=129  Identities=20%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+|||||++|+++|..|+++|++|+|||+.+.++....      +      .   ++.+ ...           ..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~------~------~---~~~~-~~~-----------~~   54 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ------H------A---WHSL-HLF-----------SP   54 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG------G------S---CTTC-BCS-----------SC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc------C------C---CCCc-Eec-----------Cc
Confidence            458999999999999999999999999999999886642211      0      0   0000 000           00


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEE-EEeCCCcEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAI-INLGDSTIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~-v~~~~g~~~~a~~vV~  160 (232)
                      ..  ...+...... ........+..+.+.+.+.+.  +++++++++|+++..++   .. +. |.+.++ ++.+|.||+
T Consensus        55 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           55 AG--WSSIPGWPMP-ASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFG---ER-LRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             GG--GSCCSSSCCC-CCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEET---TE-EEEEETTSC-EEEEEEEEE
T ss_pred             hh--hhhCCCCCCC-CCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECC---Cc-EEEEEeCCC-EEEeCEEEE
Confidence            00  0000000000 111223456777777776553  78999999999998864   44 77 888887 799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|.+|.
T Consensus       127 AtG~~~~  133 (357)
T 4a9w_A          127 ATGTWGE  133 (357)
T ss_dssp             CCCSGGG
T ss_pred             CCCCCCC
Confidence            9999874

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.63  E-value=2.3e-15  Score=130.88  Aligned_cols=78  Identities=14%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCc
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESI  178 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~  178 (232)
                      ...+++..+.+.|.+.+.  |++++.+++|+++..++  +.. +.|.+.+| +++||.||+|+|.+|. +.+.++...+.
T Consensus       145 ~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v-~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~pl  220 (830)
T 1pj5_A          145 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRV-TGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPL  220 (830)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCC
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC--CEE-EEEEECCc-EEECCEEEECCccchHHHHHHhCCCccc
Confidence            456788899998888764  79999999999998764  343 56778777 6999999999999985 45566766655


Q ss_pred             cccee
Q 044609          179 NSGRS  183 (232)
Q Consensus       179 ~~~~~  183 (232)
                      .+...
T Consensus       221 ~p~~g  225 (830)
T 1pj5_A          221 LPLAH  225 (830)
T ss_dssp             EEEEE
T ss_pred             eecee
Confidence            54333

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.62  E-value=6e-15  Score=123.18  Aligned_cols=157  Identities=17%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc--eeeeecccHHHHHHHcCChHH----------------
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG--AALTLSPNAWLALDALGVSHK----------------   65 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~--~~~~~~~~~~~~l~~~g~~~~----------------   65 (232)
                      .++||+|||||++|+++|+.|+++|.+|+||||.+.++...  .+-.++.......+.+|+.+.                
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            45899999999999999999999999999999998764311  111111111122223332211                


Q ss_pred             ------------------HHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEe
Q 044609           66 ------------------LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQF  125 (232)
Q Consensus        66 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~  125 (232)
                                        +...+.++...   ....+..    ++...   .+....+....+.+.|.+.+.  ++++++
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~---~~~~g~~----~~r~~---~~~~~~~~~~~l~~~L~~~~~~~gv~i~~  269 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDL---KRSGGAR----VDRTH---RPHGGKSSGPEIIDTLRKAAKEQGIDTRL  269 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEE---ECCTTCS----SCCEE---ECSSSSCHHHHHHHHHHHHHHHTTCCEEC
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccc---cccCCCC----CCcee---ecCCCCCCHHHHHHHHHHHHHhcCCEEEe
Confidence                              11111111100   0000000    00000   000011345677777776653  899999


Q ss_pred             CceEEEEEecCCCCCccEEEEe--CCCc--EEEccEEEecCCCchhhhhhh
Q 044609          126 SSKIAAIDSQTLNGSSAAIINL--GDST--IIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       126 ~~~v~~i~~~~~~g~~~~~v~~--~~g~--~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      +++|+++..+++ +.. ..|..  .+|+  ++.||.||+|+|.+|..++++
T Consensus       270 ~~~v~~l~~~~~-g~v-~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          270 NSRVVKLVVNDD-HSV-VGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             SEEEEEEEECTT-SBE-EEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             CCEEEEEEECCC-CcE-EEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            999999987641 232 33443  4675  689999999999999765554

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.62  E-value=2e-15  Score=125.76  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCcCcceeeeec----ccHHHHHHHcCC-hHHHHhhccCceeeE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAALTLS----PNAWLALDALGV-SHKLTSVYAPAKRVF   77 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~-~~~~~~~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~~   77 (232)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.. ..+..++.....    ....+.++.++- ......    ...+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d----~~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAID----QAGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHH----HHEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhh----hcccc
Confidence            35899999999999999999999999999999974 232222211111    112233333332 111111    01122


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      +......         ...........+++..+.+.|.+.+   +++++ ++++|+++..++  +.. +.|.+.+|.++.
T Consensus       103 f~~l~~~---------kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V-~GV~t~dG~~I~  169 (651)
T 3ces_A          103 FRILNAS---------KGPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRV-VGAVTQMGLKFR  169 (651)
T ss_dssp             EEEESTT---------SCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBE-EEEEETTSEEEE
T ss_pred             hhhhhcc---------cCcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEE-EEEEECCCCEEE
Confidence            2211110         0000011123567777777776654   36788 567999998764  443 678888898899


Q ss_pred             ccEEEecCCCchhhhhhh
Q 044609          155 AKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       155 a~~vV~A~G~~S~~r~~~  172 (232)
                      ||.||+|+|.+|..+...
T Consensus       170 Ad~VVLATGt~s~~~~i~  187 (651)
T 3ces_A          170 AKAVVLTVGTFLDGKIHI  187 (651)
T ss_dssp             EEEEEECCSTTTCCEEEC
T ss_pred             CCEEEEcCCCCccCcccc
Confidence            999999999998655443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.61  E-value=1e-14  Score=104.08  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=84.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      +||+|||||++|+.+|..|++.|.+|+++|+.+..-...                          ..+            
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~--------------------------~~~------------   43 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV--------------------------SRV------------   43 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC--------------------------SCC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc--------------------------hhh------------
Confidence            699999999999999999999999999999986321100                          000            


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                         ..++..    +   ..+....+.+.+.+.+.  +++++++ +|++++.++   .. +.+.+.+| ++.||.||.|+|
T Consensus        44 ---~~~~~~----~---~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~---~~-~~v~~~~g-~i~ad~vI~A~G  107 (180)
T 2ywl_A           44 ---PNYPGL----L---DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMG---GV-FEVETEEG-VEKAERLLLCTH  107 (180)
T ss_dssp             ---CCSTTC----T---TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECS---SS-EEEECSSC-EEEEEEEEECCT
T ss_pred             ---hccCCC----c---CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC---CE-EEEEECCC-EEEECEEEECCC
Confidence               000000    0   01334556666655543  7899999 999998764   33 77888888 899999999999


Q ss_pred             CchhhhhhhcCC
Q 044609          164 VHSMVAQWLGLS  175 (232)
Q Consensus       164 ~~S~~r~~~~~~  175 (232)
                      ..+.+++.++++
T Consensus       108 ~~~~~~~~~g~~  119 (180)
T 2ywl_A          108 KDPTLPSLLGLT  119 (180)
T ss_dssp             TCCHHHHHHTCC
T ss_pred             CCCCccccCCCC
Confidence            999888888765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.61  E-value=3.4e-15  Score=115.72  Aligned_cols=134  Identities=21%  Similarity=0.303  Sum_probs=84.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcc-------eeeeecccHHHHHHHcCChHHHHhhccCce
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATG-------AALTLSPNAWLALDALGVSHKLTSVYAPAK   74 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~   74 (232)
                      .++||+|||||++|+++|+.|+++  |++|+|||+...++...       ......+...+.++++|+...         
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------  148 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYE---------  148 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCE---------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCccc---------
Confidence            358999999999999999999997  99999999987663211       112223444555555554210         


Q ss_pred             eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCC--------------
Q 044609           75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTL--------------  137 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~--------------  137 (232)
                      .       .+..               ....+...+.+.|.+.+   ++++++++++|+++..+++              
T Consensus       149 ~-------~G~~---------------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~  206 (344)
T 3jsk_A          149 D-------EGDY---------------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAE  206 (344)
T ss_dssp             E-------CSSE---------------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC--------------
T ss_pred             c-------cCCe---------------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccc
Confidence            0       0000               00112345555555443   3789999999999987541              


Q ss_pred             -CC-CccEEEEe------CC--------CcEEEccEEEecCCCchhh
Q 044609          138 -NG-SSAAIINL------GD--------STIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       138 -~g-~~~~~v~~------~~--------g~~~~a~~vV~A~G~~S~~  168 (232)
                       .+ ..+..|..      .+        ..+++|++||+|||+.|.+
T Consensus       207 ~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v  253 (344)
T 3jsk_A          207 DEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPF  253 (344)
T ss_dssp             --CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSS
T ss_pred             cCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchh
Confidence             01 12123322      12        2479999999999999984

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.61  E-value=7.4e-15  Score=122.56  Aligned_cols=68  Identities=13%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEecCCCch-hhhhhhcC
Q 044609          104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIGCDGVHS-MVAQWLGL  174 (232)
Q Consensus       104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~A~G~~S-~~r~~~~~  174 (232)
                      .++...+...+.+.+.  |++++.+++|+++..++  +.. +.|.+.   +++  ++.||.||+|+|.|| .+++..+.
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v-~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQI-VGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEE-EEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            4567777777776553  89999999999998864  343 455542   333  799999999999998 45666554

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.61  E-value=2.4e-15  Score=118.86  Aligned_cols=122  Identities=17%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+|||||++|+++|+.|++.|++|+|||+.+.++..            .. .+          .+..  ..     
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~------------~~-~~----------~~~~--~~-----   62 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQ------------LA-AL----------YPEK--HI-----   62 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH------------HH-HT----------CTTS--EE-----
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCc------------cc-cc----------CCCc--cc-----
Confidence            3589999999999999999999999999999998765211            00 00          0000  00     


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                           +..+   +     ...+.+..+.+.|.+.+.  +++++++++|+++..++  ... +.|.+.+|.++.+|.||+|
T Consensus        63 -----~~~~---~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~-~~v~~~~g~~~~~~~li~A  126 (360)
T 3ab1_A           63 -----YDVA---G-----FPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLD--DGT-FETRTNTGNVYRSRAVLIA  126 (360)
T ss_dssp             -----CCST---T-----CSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECT--TSC-EEEEETTSCEEEEEEEEEC
T ss_pred             -----ccCC---C-----CCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECC--Cce-EEEEECCCcEEEeeEEEEc
Confidence                 0011   0     112456677777666543  68899999999998864  224 8888889988999999999


Q ss_pred             CCCchhhhhh
Q 044609          162 DGVHSMVAQW  171 (232)
Q Consensus       162 ~G~~S~~r~~  171 (232)
                      +|..|..++.
T Consensus       127 tG~~~~~~~~  136 (360)
T 3ab1_A          127 AGLGAFEPRK  136 (360)
T ss_dssp             CTTCSCCBCC
T ss_pred             cCCCcCCCCC
Confidence            9997754433

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.60  E-value=1.7e-14  Score=120.58  Aligned_cols=153  Identities=17%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----ceeeeecccHHHHHHHcCChHHH-------------
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAALTLSPNAWLALDALGVSHKL-------------   66 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~~~~~~~~~~~~~l~~~g~~~~~-------------   66 (232)
                      .++||+|||||++|+++|+.|+++|++|+||||.+..+..    +.++....  ....+++|+.+..             
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~--~~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAW--TDQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSS--CHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCC--CHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            3589999999999999999999999999999999876422    12222111  1222333321111             


Q ss_pred             ---------------------HhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeE
Q 044609           67 ---------------------TSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTI  123 (232)
Q Consensus        67 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i  123 (232)
                                           ...+.++..  . ....+..    +....   .+.........+.+.|.+.+.  ++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--~-~~~~g~~----~~r~~---~~~~g~~~g~~l~~~L~~~~~~~gv~i  272 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLTD--V-GMMGGAS----VNRAH---RPTGGAGVGAHVVQVLYDNAVKRNIDL  272 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE--E-ECCTTCS----SCCEE---ESTTTCCHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCcc--C-cccCCcC----CCeeE---ecCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence                                 011111110  0 0000000    00000   000001234567777776653  8999


Q ss_pred             EeCceEEEEEecCCCCCccEEEEe--CCCc--EEEccEEEecCCCchhhhh
Q 044609          124 QFSSKIAAIDSQTLNGSSAAIINL--GDST--IIKAKVLIGCDGVHSMVAQ  170 (232)
Q Consensus       124 ~~~~~v~~i~~~~~~g~~~~~v~~--~~g~--~~~a~~vV~A~G~~S~~r~  170 (232)
                      +++++|+++..+++ +.. +.|..  .+|+  ++.||.||+|+|.+|..++
T Consensus       273 ~~~~~v~~l~~~~~-g~v-~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~  321 (571)
T 1y0p_A          273 RMNTRGIEVLKDDK-GTV-KGILVKGMYKGYYWVKADAVILATGGFAKNNE  321 (571)
T ss_dssp             ESSEEEEEEEECTT-SCE-EEEEEEETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             EeCCEeeEeEEcCC-CeE-EEEEEEeCCCcEEEEECCeEEEeCCCcccCHH
Confidence            99999999987642 332 33443  3665  7899999999999986443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.60  E-value=5.3e-15  Score=122.83  Aligned_cols=149  Identities=20%  Similarity=0.178  Sum_probs=91.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-CCcCcceeeeec----ccHHHHHHHcCC-hHHHHhhccCceeeE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAALTLS----PNAWLALDALGV-SHKLTSVYAPAKRVF   77 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~-~~~~~~~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~~   77 (232)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.. ..+..++.....    ....+.++.+|- .......    ..+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~----~gi~  101 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ----TGIQ  101 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh----cccc
Confidence            45899999999999999999999999999999974 232222111111    112333344432 2211110    1122


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      +.......       ....  ......+++..+.+.|.+.+   +++++ ++++|+++..++  +.. ..|.+.+|.++.
T Consensus       102 f~~l~~~k-------Gpav--~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V-~GV~t~dG~~i~  168 (637)
T 2zxi_A          102 FKMLNTRK-------GKAV--QSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN--NQV-VGVRTNLGVEYK  168 (637)
T ss_dssp             EEEESTTS-------CGGG--CEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBE-EEEEETTSCEEE
T ss_pred             eeeccccc-------Cccc--cchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEE-EEEEECCCcEEE
Confidence            22111100       0000  11123567777777777654   36788 567999998764  443 678889999999


Q ss_pred             ccEEEecCCCchhhh
Q 044609          155 AKVLIGCDGVHSMVA  169 (232)
Q Consensus       155 a~~vV~A~G~~S~~r  169 (232)
                      ||.||+|+|.++..+
T Consensus       169 AdaVVLATG~~s~~~  183 (637)
T 2zxi_A          169 TKAVVVTTGTFLNGV  183 (637)
T ss_dssp             CSEEEECCTTCBTCE
T ss_pred             eCEEEEccCCCccCc
Confidence            999999999987544

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.59  E-value=5.6e-15  Score=123.03  Aligned_cols=148  Identities=17%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CcCcceeeeecc-cHHHHHHH---cC-ChHHHHhhccCceeeE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG-LRATGAALTLSP-NAWLALDA---LG-VSHKLTSVYAPAKRVF   77 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~-~~~~~~~~~~~~-~~~~~l~~---~g-~~~~~~~~~~~~~~~~   77 (232)
                      .+|||+|||||++|+++|+.|++.|.+|+|+|+... .+..++...... ....++++   ++ +.......    ..+.
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~----~gi~   95 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDA----TGIQ   95 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHh----cCCc
Confidence            459999999999999999999999999999999752 222222111111 11223332   22 11111110    1122


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK  154 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~  154 (232)
                      +......         ...........+++..+.+.|.+.+   ++++++ +.+|+++..++  +.. ..|.+.+|.++.
T Consensus        96 f~~l~~~---------kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~--g~V-~GV~t~~G~~i~  162 (641)
T 3cp8_A           96 FRMLNRS---------KGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANS--GKF-SSVTVRSGRAIQ  162 (641)
T ss_dssp             EEEECSS---------SCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEE-EEEEETTSCEEE
T ss_pred             hhhcccc---------cCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecC--CEE-EEEEECCCcEEE
Confidence            2111110         0000011123577878777777655   377885 45899988764  342 458888998999


Q ss_pred             ccEEEecCCCchhh
Q 044609          155 AKVLIGCDGVHSMV  168 (232)
Q Consensus       155 a~~vV~A~G~~S~~  168 (232)
                      ||.||+|+|.++..
T Consensus       163 Ad~VVLATG~~s~~  176 (641)
T 3cp8_A          163 AKAAILACGTFLNG  176 (641)
T ss_dssp             EEEEEECCTTCBTC
T ss_pred             eCEEEECcCCCCCc
Confidence            99999999998753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.58  E-value=2.7e-14  Score=110.28  Aligned_cols=112  Identities=19%  Similarity=0.246  Sum_probs=70.9

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      |++|||+||||||+|+++|+.|+|.|++|+|||++..-   +.                +.    ...            
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~g---g~----------------~~----~~~------------   48 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNR---NR----------------VT----QNS------------   48 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCG---GG----------------GS----SCB------------
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC---Ce----------------ee----eec------------
Confidence            56799999999999999999999999999999986421   10                00    000            


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-C-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-P-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      .      .+....        .+....+.+.+.+.+ + +...+....+..+...+  ... +.+.+.+|+++.+|.||+
T Consensus        49 ~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~g~~~~a~~lii  111 (304)
T 4fk1_A           49 H------GFITRD--------GIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQS--TGL-FEIVTKDHTKYLAERVLL  111 (304)
T ss_dssp             C------CSTTCT--------TBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECT--TSC-EEEEETTCCEEEEEEEEE
T ss_pred             C------CccCCC--------CCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecC--CCc-EEEEECCCCEEEeCEEEE
Confidence            0      000000        123344444443332 2 33334445566665543  233 788899999999999999


Q ss_pred             cCCCch
Q 044609          161 CDGVHS  166 (232)
Q Consensus       161 A~G~~S  166 (232)
                      |+|...
T Consensus       112 ATGs~p  117 (304)
T 4fk1_A          112 ATGMQE  117 (304)
T ss_dssp             CCCCEE
T ss_pred             ccCCcc
Confidence            999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.58  E-value=2.2e-14  Score=118.85  Aligned_cols=135  Identities=20%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALR-RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~-~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      +++||+|||||++|+++|..|+ +.|++|+|||+.+..+...          ......|+..++..              
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw----------~~~~ypg~~~d~~s--------------   62 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW----------YWNRYPGALSDTES--------------   62 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHH----------HHCCCTTCEEEEEG--------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcc----------cccCCCCceecCCc--------------
Confidence            4589999999999999999999 8999999999987653210          00000000000000              


Q ss_pred             CCceeEEeccCC--CCCCCCceeeeehHHHHHHHhhhCC--CC--eEEeCceEEEEEecCCCCCccEEEEeCCCcEEEcc
Q 044609           83 TGATQELSYAGK--SGRIGSGLRSVHRQSLLEALADELP--DD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAK  156 (232)
Q Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~  156 (232)
                        ....+.+...  .. +........+.++.+.+.+.+.  ++  +++++++|+++..+++ +.. +.|++.+|+++.||
T Consensus        63 --~~~~~~~~~~~~~~-~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~-~~V~~~~G~~i~ad  137 (540)
T 3gwf_A           63 --HLYRFSFDRDLLQE-STWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD-ENL-WEVTTDHGEVYRAK  137 (540)
T ss_dssp             --GGSSCCSCHHHHHH-CCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETT-TTE-EEEEETTSCEEEEE
T ss_pred             --ceeeeccccccccC-CCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCC-CCE-EEEEEcCCCEEEeC
Confidence              0000000000  00 0111235677777777766553  55  8999999999998753 334 88999999999999


Q ss_pred             EEEecCCCchh
Q 044609          157 VLIGCDGVHSM  167 (232)
Q Consensus       157 ~vV~A~G~~S~  167 (232)
                      .||+|+|.+|.
T Consensus       138 ~lV~AtG~~s~  148 (540)
T 3gwf_A          138 YVVNAVGLLSA  148 (540)
T ss_dssp             EEEECCCSCCS
T ss_pred             EEEECCccccc
Confidence            99999998763

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.56  E-value=5.3e-14  Score=114.86  Aligned_cols=55  Identities=15%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      .+.+.|.+.++.++++++++|++|+.++   .. +.|++.+|+++.||.||.|...+..
T Consensus       236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-~~v~~~~g~~~~ad~vi~a~p~~~~  290 (470)
T 3i6d_A          236 TLVEEIEKQLKLTKVYKGTKVTKLSHSG---SC-YSLELDNGVTLDADSVIVTAPHKAA  290 (470)
T ss_dssp             HHHHHHHHTCCSEEEECSCCEEEEEECS---SS-EEEEESSSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCceEEEEEcC---Ce-EEEEECCCCEEECCEEEECCCHHHH
Confidence            6677777766557899999999999874   34 8899999988999999999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.55  E-value=1.5e-14  Score=117.55  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=84.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhh-ccCcee-----
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSV-YAPAKR-----   75 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~-----   75 (232)
                      +.+||+|||||++|+++|..|++.|+  +|+|||+.+.++....   ......   ..+++....... ..++..     
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~---~~~~~~---~~~~ip~~~~~~~~~~~~~g~~~~   78 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN---YTSTLS---NKLPVPSTNPILTTEPIVGPAALP   78 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS---CCSCCC---SCCCSSBCCTTCCCCCBCCSSSCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec---CCCCCC---cccccccccccccccccccccccC
Confidence            56899999999999999999999999  9999999876532110   000000   000000000000 000000     


Q ss_pred             ---eEEEE-cCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC
Q 044609           76 ---VFVTN-LGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG  148 (232)
Q Consensus        76 ---~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~  148 (232)
                         ...+. ...... ....+...... ........+..+.+.|.+.+.  +..++++++|+++...+   .. +.|++.
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~---~~-~~V~~~  153 (447)
T 2gv8_A           79 VYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD---GS-WVVTYK  153 (447)
T ss_dssp             BCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET---TE-EEEEEE
T ss_pred             CccCchhhhhccCCCHHHhccCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC---Ce-EEEEEe
Confidence               00000 000000 00011100000 011224567788887776654  56789999999998763   33 667665


Q ss_pred             C---Cc---EEEccEEEecCCCchh
Q 044609          149 D---ST---IIKAKVLIGCDGVHSM  167 (232)
Q Consensus       149 ~---g~---~~~a~~vV~A~G~~S~  167 (232)
                      +   |+   ++.+|.||+|+|.+|.
T Consensus       154 ~~~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          154 GTKAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             ESSTTCCEEEEEESEEEECCCSSSS
T ss_pred             ecCCCCeeEEEEeCEEEECCCCCCC
Confidence            4   66   7999999999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.54  E-value=4.8e-14  Score=116.34  Aligned_cols=38  Identities=45%  Similarity=0.719  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|++|+++|+.|+++|.+|+||||.+..+
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~G   77 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWG   77 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            45899999999999999999999999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.53  E-value=1.3e-14  Score=113.37  Aligned_cols=120  Identities=20%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      .|+++||+|||||++|+++|..|++.|++|+|||+.........+.                  +... .     ..   
T Consensus         5 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~------------------~~~~-~-----~~---   57 (333)
T 1vdc_A            5 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------------LTTT-T-----DV---   57 (333)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------------GGGC-S-----EE---
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce------------------eeec-c-----cc---
Confidence            3456899999999999999999999999999999821100000000                  0000 0     00   


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                             ..++   +  .  ...+.+..+.+.|.+.+.  +++++.++ |.++..++   .. +.|.+ ++.++.+|.||
T Consensus        58 -------~~~~---~--~--~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~---~~-~~v~~-~~~~~~~~~vv  117 (333)
T 1vdc_A           58 -------ENFP---G--F--PEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSS---KP-FKLFT-DSKAILADAVI  117 (333)
T ss_dssp             -------CCST---T--C--TTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSS---SS-EEEEC-SSEEEEEEEEE
T ss_pred             -------ccCC---C--C--ccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcC---CE-EEEEE-CCcEEEcCEEE
Confidence                   0011   0  0  113556677777766543  78898886 88887653   33 67777 77889999999


Q ss_pred             ecCCCchhh
Q 044609          160 GCDGVHSMV  168 (232)
Q Consensus       160 ~A~G~~S~~  168 (232)
                      +|+|.++..
T Consensus       118 ~A~G~~~~~  126 (333)
T 1vdc_A          118 LAIGAVAKR  126 (333)
T ss_dssp             ECCCEEECC
T ss_pred             ECCCCCcCC
Confidence            999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.53  E-value=1.4e-14  Score=120.24  Aligned_cols=134  Identities=20%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+|||||++|+++|..|++.|++|+|||+.+..+...          ..-...|+..++....             
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw----------~~~~ypg~~~dv~s~~-------------   76 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW----------YWNRYPGARCDVESID-------------   76 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH----------HHCCCTTCBCSSCTTT-------------
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc----------ccCCCCCceeCCCchh-------------
Confidence            45899999999999999999999999999999987653210          0000001100000000             


Q ss_pred             CceeEEeccCC--CCCCCCceeeeehHHHHHHHhhhCC--CC--eEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           84 GATQELSYAGK--SGRIGSGLRSVHRQSLLEALADELP--DD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                         ....+...  .. +........+.++.+.+.+.+.  ++  +++++++|+++..+++ ... +.|++.+|+++.||.
T Consensus        77 ---y~~~f~~~~~~~-~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~-w~V~~~~G~~i~ad~  150 (549)
T 4ap3_A           77 ---YSYSFSPELEQE-WNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEE-GLR-WTVRTDRGDEVSARF  150 (549)
T ss_dssp             ---SSCCSCHHHHHH-CCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETT-TTE-EEEEETTCCEEEEEE
T ss_pred             ---cccccccccccC-CCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCC-CCE-EEEEECCCCEEEeCE
Confidence               00000000  00 0011123456677776665443  44  7999999999998753 334 889999999999999


Q ss_pred             EEecCCCch
Q 044609          158 LIGCDGVHS  166 (232)
Q Consensus       158 vV~A~G~~S  166 (232)
                      ||+|+|.+|
T Consensus       151 lV~AtG~~s  159 (549)
T 4ap3_A          151 LVVAAGPLS  159 (549)
T ss_dssp             EEECCCSEE
T ss_pred             EEECcCCCC
Confidence            999999876

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.52  E-value=6.9e-14  Score=116.00  Aligned_cols=137  Identities=17%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ++++||+|||||++|+++|..|++.|++|+|||+.+..+...          ..-...|+.       ....        
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw----------~~~~yPg~~-------~d~~--------   61 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW----------YWNRYPGCR-------LDTE--------   61 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH----------HHCCCTTCB-------CSSC--------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc----------ccCCCCcee-------ecCc--------
Confidence            346899999999999999999999999999999987663210          000000000       0000        


Q ss_pred             CCceeEEeccCC-CCCCCCceeeeehHHHHHHHhhhCC--CC--eEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           83 TGATQELSYAGK-SGRIGSGLRSVHRQSLLEALADELP--DD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                       .....+.+... ...+........+.++.+.+.+.+.  ++  .++++++|+++..+++ ... +.|++.+|+++.||+
T Consensus        62 -~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~-w~V~~~~G~~~~ad~  138 (545)
T 3uox_A           62 -SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVEN-DRL-WEVTLDNEEVVTCRF  138 (545)
T ss_dssp             -HHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGG-GTE-EEEEETTTEEEEEEE
T ss_pred             -hhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCC-CCE-EEEEECCCCEEEeCE
Confidence             00000000000 0000111223456666666665443  44  7999999999988653 234 889999999999999


Q ss_pred             EEecCCCchh
Q 044609          158 LIGCDGVHSM  167 (232)
Q Consensus       158 vV~A~G~~S~  167 (232)
                      ||+|+|.+|.
T Consensus       139 lV~AtG~~s~  148 (545)
T 3uox_A          139 LISATGPLSA  148 (545)
T ss_dssp             EEECCCSCBC
T ss_pred             EEECcCCCCC
Confidence            9999997763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.52  E-value=8.8e-14  Score=115.60  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=84.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .++||+|||||++|+++|..|++.|++|+|||+.+..+...          ..-...++.-+.   ....          
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w----------~~~~~pg~~~d~---~~~~----------   71 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW----------YWNRYPGARCDI---ESIE----------   71 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH----------HHCCCTTCBCSS---CTTT----------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc----------cccCCCceeecc---cccc----------
Confidence            45899999999999999999999999999999987663211          000000000000   0000          


Q ss_pred             CceeEEeccCC--CCCCCCceeeeehHHHHHHHhhhC---C-CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           84 GATQELSYAGK--SGRIGSGLRSVHRQSLLEALADEL---P-DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~---~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                         ..+.+...  .. +........+.++.+.|...+   . +.+++++++|+++..+++ +.. +.|++.+|++++||+
T Consensus        72 ---~~~~f~~~~~~~-~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~-w~V~~~~G~~~~ad~  145 (542)
T 1w4x_A           72 ---YCYSFSEEVLQE-WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEA-TNT-WTVDTNHGDRIRARY  145 (542)
T ss_dssp             ---SSCCSCHHHHHH-CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETT-TTE-EEEEETTCCEEEEEE
T ss_pred             ---cccccChhhhhc-cCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCC-CCe-EEEEECCCCEEEeCE
Confidence               00000000  00 000112345666666665433   2 367999999999988653 234 889999998999999


Q ss_pred             EEecCCCchh
Q 044609          158 LIGCDGVHSM  167 (232)
Q Consensus       158 vV~A~G~~S~  167 (232)
                      ||+|+|.+|.
T Consensus       146 vV~AtG~~s~  155 (542)
T 1w4x_A          146 LIMASGQLSV  155 (542)
T ss_dssp             EEECCCSCCC
T ss_pred             EEECcCCCCC
Confidence            9999999874

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.52  E-value=1.3e-13  Score=106.37  Aligned_cols=136  Identities=19%  Similarity=0.327  Sum_probs=84.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcc-------eeeeecccHHHHHHHcCChHHHHhhccCcee
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATG-------AALTLSPNAWLALDALGVSHKLTSVYAPAKR   75 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~   75 (232)
                      ++||+|||||++|+++|+.|+++  |++|+|+|+.+.++...       ....+.....+.++++|+...          
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~----------  134 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE----------  134 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCE----------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccc----------
Confidence            47999999999999999999998  99999999988764211       111222333444444442210          


Q ss_pred             eEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC---CCCeEEeCceEEEEEecCCC--C--CccEEEEe-
Q 044609           76 VFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL---PDDTIQFSSKIAAIDSQTLN--G--SSAAIINL-  147 (232)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~i~~~~~~--g--~~~~~v~~-  147 (232)
                          .  .+..               ....+...+.+.|.+.+   ++++++.+++|+++..+++.  +  .. ..|.. 
T Consensus       135 ----~--~g~~---------------~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV-~GVvv~  192 (326)
T 2gjc_A          135 ----D--EGDY---------------VVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTV-AGVVTN  192 (326)
T ss_dssp             ----E--CSSE---------------EEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CE-EEEEEE
T ss_pred             ----c--CCCe---------------EEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEE-EEEEec
Confidence                0  0000               01113345566665543   47899999999999876321  2  22 33332 


Q ss_pred             -----C--------CCcEEEc---------------cEEEecCCCchhhhhhh
Q 044609          148 -----G--------DSTIIKA---------------KVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       148 -----~--------~g~~~~a---------------~~vV~A~G~~S~~r~~~  172 (232)
                           .        ++.++.|               ++||+|+|+.|.+.+.+
T Consensus       193 ~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          193 WTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             EHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             ceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                 1        3357999               99999999998765544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.51  E-value=5.2e-14  Score=109.75  Aligned_cols=115  Identities=23%  Similarity=0.301  Sum_probs=82.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+||+|||||++|+++|..|+++|++|+|||+.+.++...             ..          ..+..  .       
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~-------------~~----------~~~~~--~-------   54 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL-------------SA----------LYPEK--Y-------   54 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH-------------HH----------HCTTS--E-------
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee-------------hh----------cCCCc--e-------
Confidence            4899999999999999999999999999999987653110             00          00000  0       


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                         ..++..        ...+.+..+.+.+.+.+.  +++++++++|+++...+  +.. +.|.+.+|+ +.+|.||+|+
T Consensus        55 ---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~-~~v~~~~g~-~~~d~vVlAt  119 (332)
T 3lzw_A           55 ---IYDVAG--------FPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQA--DGV-FKLVTNEET-HYSKTVIITA  119 (332)
T ss_dssp             ---ECCSTT--------CSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECT--TSC-EEEEESSEE-EEEEEEEECC
T ss_pred             ---EeccCC--------CCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECC--CCc-EEEEECCCE-EEeCEEEECC
Confidence               001110        112456777777777654  78999999999998875  324 888888887 9999999999


Q ss_pred             CCch
Q 044609          163 GVHS  166 (232)
Q Consensus       163 G~~S  166 (232)
                      |..+
T Consensus       120 G~~~  123 (332)
T 3lzw_A          120 GNGA  123 (332)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            9954

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.51  E-value=9.5e-14  Score=106.61  Aligned_cols=110  Identities=17%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+||+|||||++|+++|..|+++|++|+|||+.+.....                            +          . 
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~----------------------------~----------~-   42 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF----------------------------A----------S-   42 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG----------------------------C----------S-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc----------------------------c----------h-
Confidence            389999999999999999999999999999986522100                            0          0 


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                        ....+.        .........+.+.+.+.+.   +++++ ..+|+++..++   .. +.|.+.+++++.+|.||+|
T Consensus        43 --~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~~d~vviA  107 (297)
T 3fbs_A           43 --HSHGFL--------GQDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSF---GE-FIVEIDGGRRETAGRLILA  107 (297)
T ss_dssp             --CCCSST--------TCTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEET---TE-EEEEETTSCEEEEEEEEEC
T ss_pred             --hhcCCc--------CCCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEEC
Confidence              000011        0112445666666666553   45554 45899998764   34 8888999999999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|..+..
T Consensus       108 tG~~~~~  114 (297)
T 3fbs_A          108 MGVTDEL  114 (297)
T ss_dssp             CCCEEEC
T ss_pred             CCCCCCC
Confidence            9997654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.51  E-value=1.8e-13  Score=106.24  Aligned_cols=111  Identities=20%  Similarity=0.277  Sum_probs=79.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+|||||++|+++|+.|+++|++|+|||+.  ++...   ..                                 .
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~---~~---------------------------------~   55 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQL---TE---------------------------------A   55 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGG---GG---------------------------------C
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCee---cc---------------------------------c
Confidence            3589999999999999999999999999999997  21110   00                                 0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                      .  ....++.        ........+.+.+.+.+.  ++++++ ++|+++..++   .. +.+.+.++.++.+|.||+|
T Consensus        56 ~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~~~g~~~~~d~lvlA  120 (323)
T 3f8d_A           56 G--IVDDYLG--------LIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG---DE-FVVKTKRKGEFKADSVILG  120 (323)
T ss_dssp             C--EECCSTT--------STTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC-----C-EEEEESSSCEEEEEEEEEC
T ss_pred             c--cccccCC--------CCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC---CE-EEEEECCCCEEEcCEEEEC
Confidence            0  0001110        012456677777665543  788888 8999998764   33 7888888889999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       121 tG~~~~  126 (323)
T 3f8d_A          121 IGVKRR  126 (323)
T ss_dssp             CCCEEC
T ss_pred             cCCCCc
Confidence            998854

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.51  E-value=1e-13  Score=108.41  Aligned_cols=118  Identities=17%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+|||||++|+++|..|+++|++|+|||+.+.......+               .+..   . .            
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg---------------~~~~---~-~------------   69 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGG---------------QLTT---T-T------------   69 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC---------------GGGG---S-S------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCc---------------cccc---c-h------------
Confidence            4589999999999999999999999999999997621111000               0000   0 0            


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeC---CCcEEEccEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLG---DSTIIKAKVL  158 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~~~~a~~v  158 (232)
                         ....++..       ...+.+..+.+.+.+.+.  ++++++++ |+++..+.   .. +.+.+.   ++.++.+|.|
T Consensus        70 ---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~---~~-~~v~~~~~~~~~~~~~d~v  134 (338)
T 3itj_A           70 ---EIENFPGF-------PDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSS---KP-FKLWTEFNEDAEPVTTDAI  134 (338)
T ss_dssp             ---EECCSTTC-------TTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSS---SS-EEEEETTCSSSCCEEEEEE
T ss_pred             ---hhcccCCC-------cccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcC---CE-EEEEEEecCCCcEEEeCEE
Confidence               00011110       113556777777766553  78999988 99998764   44 777763   6678999999


Q ss_pred             EecCCCchh
Q 044609          159 IGCDGVHSM  167 (232)
Q Consensus       159 V~A~G~~S~  167 (232)
                      |+|+|..+.
T Consensus       135 vlAtG~~~~  143 (338)
T 3itj_A          135 ILATGASAK  143 (338)
T ss_dssp             EECCCEEEC
T ss_pred             EECcCCCcC
Confidence            999998764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.50  E-value=2.5e-13  Score=113.84  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCc----ceeee--ecc-cHH-----HHHHHc-CCh--
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRAT----GAALT--LSP-NAW-----LALDAL-GVS--   63 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~----~~~~~--~~~-~~~-----~~l~~~-g~~--   63 (232)
                      |++.++||+|||||++|+++|+.|++.|  .+|+||||.+.....    ..++.  +.. ..+     ..++.- ++.  
T Consensus         1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~   80 (602)
T 1kf6_A            1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQ   80 (602)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCcccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCH
Confidence            6677899999999999999999999999  999999998654221    11221  110 111     111110 000  


Q ss_pred             --------------HHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceee---eehHHHHHHHhhhCC--C-CeE
Q 044609           64 --------------HKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRS---VHRQSLLEALADELP--D-DTI  123 (232)
Q Consensus        64 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~--~-~~i  123 (232)
                                    +.+...+.++.     ....+......+   .+........   .....+.+.|.+.+.  + +++
T Consensus        81 ~~v~~~~~~~~~~i~~L~~~Gv~f~-----~~~~g~~~~~~~---gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i  152 (602)
T 1kf6_A           81 DVVDYFVHHCPTEMTQLELWGCPWS-----RRPDGSVNVRRF---GGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQR  152 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCC-----BCTTSSBCCBCC---TTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcc-----cCCCCccccccc---CCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEE
Confidence                          01111111111     001111100000   0100000000   113467777776653  5 899


Q ss_pred             EeCceEEEEEecCCCCCccEEEE---eCCCc--EEEccEEEecCCCchhhhhhh
Q 044609          124 QFSSKIAAIDSQTLNGSSAAIIN---LGDST--IIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       124 ~~~~~v~~i~~~~~~g~~~~~v~---~~~g~--~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      ++++.|+++..++  +.. ..|.   +.+|+  ++.|+.||+|+|.+|.++...
T Consensus       153 ~~~~~v~~l~~~~--g~v-~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          153 FDEHFVLDILVDD--GHV-RGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             EETEEEEEEEEET--TEE-EEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             EeCCEEEEEEEeC--CEE-EEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            9999999998764  432 3332   35676  789999999999999876544

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.49  E-value=2.2e-13  Score=105.40  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=78.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +||+|||||++|+++|..|++.|+ +|+|||+.. ++..    ....                   ..            
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~----~~~~-------------------~~------------   45 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQ----ITGS-------------------SE------------   45 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCG----GGGC-------------------SC------------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcc----cccc-------------------cc------------
Confidence            699999999999999999999999 999999952 2110    0000                   00            


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                       .  ..++.       ....+.+..+.+.+.+.+.  +++++. ++|+++..++   .. +.+.+.+|+++.+|.||+|+
T Consensus        46 -~--~~~~~-------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~~~g~~~~~~~vv~At  110 (311)
T 2q0l_A           46 -I--ENYPG-------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKD---SH-FVILAEDGKTFEAKSVIIAT  110 (311)
T ss_dssp             -B--CCSTT-------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEET---TE-EEEEETTSCEEEEEEEEECC
T ss_pred             -c--ccCCC-------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcC---CE-EEEEEcCCCEEECCEEEECC
Confidence             0  00000       0113456667776665443  688887 7899998764   34 77878888899999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |.++..
T Consensus       111 G~~~~~  116 (311)
T 2q0l_A          111 GGSPKR  116 (311)
T ss_dssp             CEEECC
T ss_pred             CCCCCC
Confidence            987754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.48  E-value=5.5e-13  Score=104.60  Aligned_cols=143  Identities=15%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceee----------e-------ecccHHHHHHHcCChHH
Q 044609            6 EDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAAL----------T-------LSPNAWLALDALGVSHK   65 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~----------~-------~~~~~~~~l~~~g~~~~   65 (232)
                      +||+|||||++|+++|+.|++   .|++|+||||.+..+......          .       ..+.....+..+  .+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~--~~~   79 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRF--YDE   79 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHH--HHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHH--HHH
Confidence            489999999999999999999   999999999987653211110          0       011111011100  111


Q ss_pred             HHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEE
Q 044609           66 LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAII  145 (232)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v  145 (232)
                      +..... ...    + ...............    ....-....+.+.|.+.+ +++++++++|+++..++   +. +.|
T Consensus        80 ~~~~g~-~~~----~-~~~~~~~~~~~~~~~----~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~---~~-~~v  144 (342)
T 3qj4_A           80 LLAYGV-LRP----L-SSPIEGMVMKEGDCN----FVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRD---DK-WEV  144 (342)
T ss_dssp             HHHTTS-CEE----C-CSCEETCCC--CCEE----EECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECS---SS-EEE
T ss_pred             HHhCCC-eec----C-chhhcceeccCCccc----eecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcC---CE-EEE
Confidence            111111 000    0 000000000000000    000011245666666655 78999999999999864   44 888


Q ss_pred             EeCCCcEEEccEEEecCCCc
Q 044609          146 NLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus       146 ~~~~g~~~~a~~vV~A~G~~  165 (232)
                      .+.+|+++.||.||+|+...
T Consensus       145 ~~~~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          145 SKQTGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             EESSSCCEEESEEEECSCHH
T ss_pred             EECCCCEEEcCEEEECCCHH
Confidence            89888888999999999753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.46  E-value=3.6e-13  Score=104.56  Aligned_cols=115  Identities=21%  Similarity=0.332  Sum_probs=76.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |.|+.+||+|||||++|+++|..|++.|++|+|||+.. ++  + .+..                   . ...       
T Consensus         1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g-~~~~-------------------~-~~~-------   49 (320)
T 1trb_A            1 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG--G-QLTT-------------------T-TEV-------   49 (320)
T ss_dssp             CCEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TT--G-GGGG-------------------C-SBC-------
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CC--c-eEec-------------------c-hhh-------
Confidence            34567999999999999999999999999999999652 21  1 0000                   0 000       


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                        .      .++..       ...+.+..+.+.+.+.+.  +++++.++ |+++..++   .. +.+ +.++.++.+|.|
T Consensus        50 --~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~---~~-~~v-~~~~~~~~~~~l  108 (320)
T 1trb_A           50 --E------NWPGD-------PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQN---RP-FRL-NGDNGEYTCDAL  108 (320)
T ss_dssp             --C------CSTTC-------CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSS---SS-EEE-EESSCEEEEEEE
T ss_pred             --h------hCCCC-------CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecC---CE-EEE-EeCCCEEEcCEE
Confidence              0      00000       012345556665554442  78888886 88887653   33 666 667888999999


Q ss_pred             EecCCCchh
Q 044609          159 IGCDGVHSM  167 (232)
Q Consensus       159 V~A~G~~S~  167 (232)
                      |+|+|..+.
T Consensus       109 v~AtG~~~~  117 (320)
T 1trb_A          109 IIATGASAR  117 (320)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCcC
Confidence            999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.46  E-value=2.8e-13  Score=114.38  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=36.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |.+.++||+|||||++|+++|+.|++.|.+|+||||.+..
T Consensus         1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCcccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            6667799999999999999999999999999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.46  E-value=4.3e-13  Score=106.04  Aligned_cols=38  Identities=29%  Similarity=0.512  Sum_probs=34.5

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++++||+|||||++|+++|+.|+++|++|+|||+....
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            35689999999999999999999999999999997643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.46  E-value=6.4e-13  Score=103.47  Aligned_cols=114  Identities=21%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+|||||++|+++|..|++.|++|+|||+. .++...   ...                    ..           
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~---~~~--------------------~~-----------   51 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQI---AWS--------------------EE-----------   51 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG---GGC--------------------SC-----------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccc---ccc--------------------cc-----------
Confidence            3589999999999999999999999999999998 331110   000                    00           


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEec--CCCCCccEEEEeCCCcEEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQ--TLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~--~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                        .  ..++..    +   ..+.+..+.+.+.+.+.  +++++. .+|.++..+  +  +.. +.|.+.+|+++.+|.||
T Consensus        52 --~--~~~~~~----~---~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~--~~~-~~v~~~~g~~~~~~~vv  116 (325)
T 2q7v_A           52 --V--ENFPGF----P---EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATS--HPY-PFTVRGYNGEYRAKAVI  116 (325)
T ss_dssp             --B--CCSTTC----S---SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTS--SSC-CEEEEESSCEEEEEEEE
T ss_pred             --c--ccCCCC----C---CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCC--Cce-EEEEECCCCEEEeCEEE
Confidence              0  000000    0   12345566666655443  788887 589999876  3  222 55667788889999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      +|+|..+.
T Consensus       117 ~AtG~~~~  124 (325)
T 2q7v_A          117 LATGADPR  124 (325)
T ss_dssp             ECCCEEEC
T ss_pred             ECcCCCcC
Confidence            99998764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.46  E-value=2.3e-13  Score=112.13  Aligned_cols=62  Identities=8%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             HHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609          109 SLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG  173 (232)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~  173 (232)
                      .+.+.|.+.++  |++|+++++|++|..++  +.. ..|++.||+++.||.||.+.+.+...+++++
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~--~~~-~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTG--NKI-EAVHLEDGRRFLTQAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTSCEEECSCEEECCC----------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeC--CeE-EEEEecCCcEEEcCEEEECCCHHHHHHHhcc
Confidence            45555555443  78999999999999875  454 6799999999999999998888877666664

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.46  E-value=1.8e-13  Score=111.60  Aligned_cols=146  Identities=16%  Similarity=0.249  Sum_probs=83.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCc---EEEEecCCCCcCcceeeeecc-cHHHHHHHcCChHHHHhhccCceeeEE
Q 044609            6 EDVVIIGAGIAGLATAVALRR---LGIK---ALVLEKSDGLRATGAALTLSP-NAWLALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~---~g~~---v~viE~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      +||+|||||++|+++|..|++   .|++   |+|||+.+.++....   ... .+   ...+|+..    ..........
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~---~~~~~g---~~~~g~~~----~~~~y~~l~~   72 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN---YTWRTG---LDENGEPV----HSSMYRYLWS   72 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS---CCSCCS---BCTTSSBC----CCCCCTTCBC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee---cCCCCC---ccccCCCC----cCccccchhh
Confidence            699999999999999999999   9999   999999876532110   000 00   00001000    0000000000


Q ss_pred             EEcCCCce---eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCe--EEeCceEEEEEecCCCCCccEEEEeCC--
Q 044609           79 TNLGTGAT---QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDT--IQFSSKIAAIDSQTLNGSSAAIINLGD--  149 (232)
Q Consensus        79 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~i~~~~~~g~~~~~v~~~~--  149 (232)
                       . .....   ..++++...+  ......+.+..+.+.|.+.+.  +++  ++++++|+++...++ +.. +.|++.+  
T Consensus        73 -~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~-~~~-~~V~~~~~~  146 (464)
T 2xve_A           73 -N-GPKECLEFADYTFDEHFG--KPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED-SQT-FTVTVQDHT  146 (464)
T ss_dssp             -S-SCGGGTCBTTBCHHHHHS--SCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETT-TTE-EEEEEEETT
T ss_pred             -c-CChhhcccCCCCCCcccC--CCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCC-CCc-EEEEEEEcC
Confidence             0 00000   0001100000  001224567888888876654  666  899999999987652 223 6676654  


Q ss_pred             -C--cEEEccEEEecCCCchh
Q 044609          150 -S--TIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       150 -g--~~~~a~~vV~A~G~~S~  167 (232)
                       |  .++.+|.||+|+|.+|.
T Consensus       147 ~g~~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          147 TDTIYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             TTEEEEEEESEEEECCCSSSS
T ss_pred             CCceEEEEcCEEEECCCCCCC
Confidence             4  47899999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.45  E-value=7.6e-13  Score=102.49  Aligned_cols=38  Identities=37%  Similarity=0.595  Sum_probs=34.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+.++|||+||||||+|+++|..|++.|++|+|||+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            77788999999999999999999999999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.45  E-value=8.1e-13  Score=102.16  Aligned_cols=114  Identities=25%  Similarity=0.317  Sum_probs=78.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ++||+|||||++|+++|..|++.|++|+|||+..    .+.  ..        .          . .     ..      
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~----gG~--~~--------~----------~-~-----~~------   44 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF----GGQ--IL--------D----------T-V-----DI------   44 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST----TGG--GG--------G----------C-C-----EE------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC----Cce--ec--------c----------c-c-----cc------
Confidence            3799999999999999999999999999998631    110  00        0          0 0     00      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                          ..+.      .  .....+..+.+.+.+.+.  +++++.+++|+.+..+.+.+.. +.|.+.+|+++.+|.||+|+
T Consensus        45 ----~~~~------~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~-~~v~~~~g~~~~~~~lv~At  111 (310)
T 1fl2_A           45 ----ENYI------S--VPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGL-HQIETASGAVLKARSIIVAT  111 (310)
T ss_dssp             ----CCBT------T--BSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCC-EEEEETTSCEEEEEEEEECC
T ss_pred             ----cccc------C--cCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCce-EEEEECCCCEEEeCEEEECc
Confidence                0000      0  012345566666655442  7899999999999765321224 78888889889999999999


Q ss_pred             CCchh
Q 044609          163 GVHSM  167 (232)
Q Consensus       163 G~~S~  167 (232)
                      |.++.
T Consensus       112 G~~~~  116 (310)
T 1fl2_A          112 GAKWR  116 (310)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.45  E-value=4e-13  Score=106.38  Aligned_cols=135  Identities=19%  Similarity=0.228  Sum_probs=79.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      |+++||+|||||++|+++|..|++.|+ +|+|||+.+ ++..   ...++....      +       ..+.    .   
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~---~~~~~~~~~------~-------~~~~----~---   57 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHS---FKHWPKSTR------T-------ITPS----F---   57 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHH---HHTSCTTCB------C-------SSCC----C---
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCc---cccCccccc------c-------cCcc----h---
Confidence            346899999999999999999999999 999999987 3210   000000000      0       0000    0   


Q ss_pred             CCCceeEEeccCCCCCC----CCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEc
Q 044609           82 GTGATQELSYAGKSGRI----GSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKA  155 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a  155 (232)
                      .........+.......    ......+.+..+.+.+.+.+.  +++++++++|+++..++   .. +.|.+.++ ++.+
T Consensus        58 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~~  132 (369)
T 3d1c_A           58 TSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADD---AY-YTIATTTE-TYHA  132 (369)
T ss_dssp             CCGGGTCCCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS---SS-EEEEESSC-CEEE
T ss_pred             hcccCCchhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC---Ce-EEEEeCCC-EEEe
Confidence            00000000000000000    000113455566665554432  78999999999998764   33 77877777 5899


Q ss_pred             cEEEecCCCch
Q 044609          156 KVLIGCDGVHS  166 (232)
Q Consensus       156 ~~vV~A~G~~S  166 (232)
                      |.||+|+|.++
T Consensus       133 d~vVlAtG~~~  143 (369)
T 3d1c_A          133 DYIFVATGDYN  143 (369)
T ss_dssp             EEEEECCCSTT
T ss_pred             CEEEECCCCCC
Confidence            99999999976

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.44  E-value=3.9e-13  Score=111.48  Aligned_cols=37  Identities=38%  Similarity=0.484  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||||++|+++|+.|++ |.+|+||||.+..+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC
Confidence            46899999999999999999999 99999999987653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.44  E-value=9.8e-13  Score=102.14  Aligned_cols=111  Identities=25%  Similarity=0.307  Sum_probs=74.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +++||+|||||++|+++|..|++.|++|+|||+.. ++  +. ....                    ...          
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g~-~~~~--------------------~~~----------   60 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AG--GL-TAEA--------------------PLV----------   60 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TT--GG-GGGC--------------------SCB----------
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CC--cc-cccc--------------------chh----------
Confidence            35899999999999999999999999999999943 21  10 0000                    000          


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                           ..++      ..  ..+.+..+.+.+.+.+.  ++++++ .+|.++..++   .. +.|.+ ++.++.+|.||+|
T Consensus        61 -----~~~~------~~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~-~~~~~~~~~li~A  121 (319)
T 3cty_A           61 -----ENYL------GF--KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQ---GG-FDIET-NDDTYHAKYVIIT  121 (319)
T ss_dssp             -----CCBT------TB--SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEET---TE-EEEEE-SSSEEEEEEEEEC
T ss_pred             -----hhcC------CC--cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeC---CE-EEEEE-CCCEEEeCEEEEC
Confidence                 0000      00  12344556665555442  677777 6899998753   33 66666 5668999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|.++.
T Consensus       122 tG~~~~  127 (319)
T 3cty_A          122 TGTTHK  127 (319)
T ss_dssp             CCEEEC
T ss_pred             CCCCcc
Confidence            998764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.44  E-value=1e-12  Score=109.79  Aligned_cols=156  Identities=24%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----ceeeeecc-----------cHHHHHHH---cCC---
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAALTLSP-----------NAWLALDA---LGV---   62 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~~~~~~~~-----------~~~~~l~~---~g~---   62 (232)
                      .++||+|||+|++|+++|+.|++.|++|+|+|+.+.++..    +.++....           .....++.   .+.   
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  204 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            3579999999999999999999999999999998866421    11221100           00011111   010   


Q ss_pred             ---------------hHHHHhhccCceeeEEEEcCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEE
Q 044609           63 ---------------SHKLTSVYAPAKRVFVTNLGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQ  124 (232)
Q Consensus        63 ---------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~  124 (232)
                                     .+.+...+.++...   ....+.. .....        ..........+.+.|.+.+.  +++++
T Consensus       205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~---~~~gg~~~~r~~~--------~~~~~~~g~~l~~~L~~~~~~~gv~i~  273 (572)
T 1d4d_A          205 DPELVKVLANNSSDSIDWLTSMGADMTDV---GRMGGASVNRSHR--------PTGGAGVGAHVAQVLWDNAVKRGTDIR  273 (572)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHTCCCCEE---ECCTTCSSCCEEE--------STTTCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCccccc---cccCCCcCCeeEe--------cCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence                           00111111111110   0000000 00000        00001234566777766553  89999


Q ss_pred             eCceEEEEEecCCCCCccEEEEe--CCCc--EEEccEEEecCCCchhhhhhh
Q 044609          125 FSSKIAAIDSQTLNGSSAAIINL--GDST--IIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       125 ~~~~v~~i~~~~~~g~~~~~v~~--~~g~--~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      ++++|+++..+++ +.. +.|..  .+|+  ++.||.||+|+|.+|..++++
T Consensus       274 ~~t~v~~l~~~~~-g~v-~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          274 LNSRVVRILEDAS-GKV-TGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             SSEEEEEEEEC---CCE-EEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             ecCEEEEEEECCC-CeE-EEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence            9999999987531 232 33443  3664  689999999999998654433

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.43  E-value=5.2e-12  Score=105.72  Aligned_cols=37  Identities=35%  Similarity=0.423  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||||++|+++|+.|+++|.+|+||||.+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4589999999999999999999999999999998765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.42  E-value=2.2e-12  Score=99.86  Aligned_cols=119  Identities=21%  Similarity=0.258  Sum_probs=73.8

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+ +.|||+||||||||+++|..|++.|++|+|||+....+....+               .   +      .....+  
T Consensus         1 M~-~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G---------------~---~------~~~~~i--   53 (314)
T 4a5l_A            1 MS-NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGG---------------Q---L------TTTTII--   53 (314)
T ss_dssp             -C-CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTC---------------G---G------GGSSEE--
T ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCC---------------C---c------CChHHh--
Confidence            66 4599999999999999999999999999999987532111000               0   0      000000  


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                              .+++..     +  ..+...++.+.+.+.+.  +..+... .+.......   .. ..+.+.++.++.+|.|
T Consensus        54 --------~~~~g~-----~--~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~---~~-~~~~~~~~~~~~~~~l  113 (314)
T 4a5l_A           54 --------ENFPGF-----P--NGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFST---QP-FKLFTEEGKEVLTKSV  113 (314)
T ss_dssp             --------CCSTTC-----T--TCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSS---SS-EEEEETTCCEEEEEEE
T ss_pred             --------hhccCC-----c--ccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCC---Cc-eEEEECCCeEEEEeEE
Confidence                    011111     1  12455566665555443  4555543 555555443   33 6677788889999999


Q ss_pred             EecCCCch
Q 044609          159 IGCDGVHS  166 (232)
Q Consensus       159 V~A~G~~S  166 (232)
                      |+|+|...
T Consensus       114 iiATG~~~  121 (314)
T 4a5l_A          114 IIATGATA  121 (314)
T ss_dssp             EECCCEEE
T ss_pred             EEcccccc
Confidence            99999754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.41  E-value=1.6e-12  Score=109.11  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=86.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc----eeee--ec---ccHHHH-----HHHc-CCh-----
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG----AALT--LS---PNAWLA-----LDAL-GVS-----   63 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~----~~~~--~~---~~~~~~-----l~~~-g~~-----   63 (232)
                      .++||+|||||++|+++|+.|+++|.+|+||||....+...    .++.  +.   ...++.     ++.- ++.     
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v   96 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI   96 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            35899999999999999999999999999999987543211    1221  11   112211     1110 110     


Q ss_pred             -----------HHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCC---Cceeee-----ehHHHHHHHhhhCC--CCe
Q 044609           64 -----------HKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIG---SGLRSV-----HRQSLLEALADELP--DDT  122 (232)
Q Consensus        64 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~l~~~l~~~~~--~~~  122 (232)
                                 +.+...+.++.     ....+......+......+.   ......     ....+++.|.+.+.  +++
T Consensus        97 ~~l~~~s~~~i~~L~~~Gv~f~-----~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~  171 (621)
T 2h88_A           97 HYMTEQAPAAVIELENYGMPFS-----RTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTS  171 (621)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCC-----BCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcc-----cCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence                       11111111111     11111111111111100000   000111     23467777777654  799


Q ss_pred             EEeCceEEEEEecCCCCCccEEEEe---CCCc--EEEccEEEecCCCchhh
Q 044609          123 IQFSSKIAAIDSQTLNGSSAAIINL---GDST--IIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       123 i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~--~~~a~~vV~A~G~~S~~  168 (232)
                      +++++.|+++..++  +.. ..|..   .+|+  ++.|+.||+|+|.++.+
T Consensus       172 i~~~~~v~~Li~~~--g~v-~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          172 YFVEYFALDLLMEN--GEC-RGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             EEETEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             EEEceEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            99999999998754  443 33433   4665  68999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=1.4e-12  Score=102.08  Aligned_cols=112  Identities=21%  Similarity=0.340  Sum_probs=75.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +.+||+|||||++|+++|..|++.|++|+|||+.. ++  + .+..                    ...           
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g--g-~~~~--------------------~~~-----------   57 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FG--G-ALMT--------------------TTD-----------   57 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CS--C-GGGS--------------------CSC-----------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CC--C-ceec--------------------cch-----------
Confidence            45899999999999999999999999999999752 11  1 0000                    000           


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEE-EeCCCcEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAII-NLGDSTIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v-~~~~g~~~~a~~vV~  160 (232)
                        .  ..++..       ...+.+..+.+.+.+.+.  ++++++++ |.++.. .  +.  +.| .+.+++++.+|.||+
T Consensus        58 --~--~~~~~~-------~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~--~~--~~v~~~~~g~~~~~d~lvi  120 (335)
T 2a87_A           58 --V--ENYPGF-------RNGITGPELMDEMREQALRFGADLRMED-VESVSL-H--GP--LKSVVTADGQTHRARAVIL  120 (335)
T ss_dssp             --B--CCSTTC-------TTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-S--SS--SEEEEETTSCEEEEEEEEE
T ss_pred             --h--hhcCCC-------CCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-C--Cc--EEEEEeCCCCEEEeCEEEE
Confidence              0  000100       012345566666655442  78898886 888876 3  33  556 778888899999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|..+.
T Consensus       121 AtG~~~~  127 (335)
T 2a87_A          121 AMGAAAR  127 (335)
T ss_dssp             CCCEEEC
T ss_pred             CCCCCcc
Confidence            9998764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.40  E-value=2.5e-12  Score=104.95  Aligned_cols=151  Identities=16%  Similarity=0.213  Sum_probs=82.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-----CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEE
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-----IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVT   79 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-----~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (232)
                      .+||+|||||++|+++|..|++.|     ++|+|||+.+..+..... .+....+.    .....++.....+.....+.
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~-~~~~~~~~----~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNT-LVSQSELQ----ISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGG-CCSSCBCS----SCTTSSSSTTTCTTCTTSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCC-CCCCCcCC----cchhhccccccCCCCCCChh
Confidence            479999999999999999999999     999999999866421100 00000000    00000000000000000000


Q ss_pred             --EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc---
Q 044609           80 --NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST---  151 (232)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~---  151 (232)
                        ....+..  ..+.      ........+..+.+.+...+.  ++.++++++|+++..+++.+.. .+.|.+.++.   
T Consensus       105 ~~l~~~~~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~  176 (463)
T 3s5w_A          105 NYLHKHDRL--VDFI------NLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEE  176 (463)
T ss_dssp             HHHHHTTCH--HHHH------HHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCE
T ss_pred             HhhhhcCce--eecc------cccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCce
Confidence              0000000  0000      001123456777777765543  5789999999999876311121 1366666665   


Q ss_pred             -EEEccEEEecCCCchhh
Q 044609          152 -IIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       152 -~~~a~~vV~A~G~~S~~  168 (232)
                       ++.+|.||+|+|....+
T Consensus       177 ~~~~~d~lVlAtG~~p~~  194 (463)
T 3s5w_A          177 LVRTTRALVVSPGGTPRI  194 (463)
T ss_dssp             EEEEESEEEECCCCEECC
T ss_pred             EEEEeCEEEECCCCCCCC
Confidence             89999999999986543

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.39  E-value=3.9e-13  Score=108.43  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             HHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhh
Q 044609          109 SLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~  172 (232)
                      .+.+.|.+.+.  |++++++++|++|..++  +.. ..|.+. |+++.||.||.|+|.+...+ ++
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~gv~~~-g~~~~ad~VV~a~~~~~~~~-ll  257 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIEN--GKA-AGIIAD-DRIHDADLVISNLGHAATAV-LC  257 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEET-TEEEECSEEEECSCHHHHHH-HT
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEEC--CEE-EEEEEC-CEEEECCEEEECCCHHHHHH-hc
Confidence            45556665553  78999999999999864  342 346664 77899999999999987643 44

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.39  E-value=5.6e-12  Score=103.23  Aligned_cols=62  Identities=32%  Similarity=0.459  Sum_probs=47.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee-------------ee--cccHHHHHHHcCChHHH
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL-------------TL--SPNAWLALDALGVSHKL   66 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~-------------~~--~~~~~~~l~~~g~~~~~   66 (232)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.++......             ..  .+...+.++++|+.+.+
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~   92 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRI   92 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCccee
Confidence            4799999999999999999999999999999998764322111             11  24567888999886543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.39  E-value=4e-12  Score=104.04  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      .+.+.|.+.+..++|+++++|++|+.++   .. +.|++.+| ++.||.||.|.+.+..
T Consensus       237 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-~~v~~~~g-~~~ad~vV~a~p~~~~  290 (475)
T 3lov_A          237 SLIERLEEVLERSEIRLETPLLAISRED---GR-YRLKTDHG-PEYADYVLLTIPHPQV  290 (475)
T ss_dssp             HHHHHHHHHCSSCEEESSCCCCEEEEET---TE-EEEECTTC-CEEESEEEECSCHHHH
T ss_pred             HHHHHHHhhccCCEEEcCCeeeEEEEeC---CE-EEEEECCC-eEECCEEEECCCHHHH
Confidence            4666677666557999999999998764   44 78888888 7999999999988754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.38  E-value=4.8e-12  Score=104.61  Aligned_cols=115  Identities=25%  Similarity=0.337  Sum_probs=78.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ..+||+||||||+|+++|..|++.|++|+|+|+..    .+.  ..        ...++                    .
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~----GG~--~~--------~~~~~--------------------~  256 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF----GGQ--VL--------DTVDI--------------------E  256 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST----TGG--GT--------TCSCB--------------------C
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC----CCc--cc--------ccccc--------------------c
Confidence            35899999999999999999999999999998631    110  00        00000                    0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                            .+..        .....+..+.+.+.+.+.  +++++.+++|+++..+.+.+.. +.|.+.+|.++.+|.||+|
T Consensus       257 ------~~~~--------~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~-~~V~~~~g~~~~~d~vVlA  321 (521)
T 1hyu_A          257 ------NYIS--------VPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGL-HQIETASGAVLKARSIIIA  321 (521)
T ss_dssp             ------CBTT--------BSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSC-EEEEETTSCEEEEEEEEEC
T ss_pred             ------ccCC--------CCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCce-EEEEECCCCEEEcCEEEEC
Confidence                  0000        001345566666655442  7899999999999764321234 7888899989999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|.++.
T Consensus       322 tG~~~~  327 (521)
T 1hyu_A          322 TGAKWR  327 (521)
T ss_dssp             CCEEEC
T ss_pred             CCCCcC
Confidence            998764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.37  E-value=1.1e-11  Score=102.49  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=42.2

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      .+.+.|.+.+ +++++++++|++|..++   .. +.|.+.+|+++.||.||.|.+....
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~---~~-v~v~~~~g~~~~ad~VI~a~p~~~l  269 (520)
T 1s3e_A          216 QVSERIMDLL-GDRVKLERPVIYIDQTR---EN-VLVETLNHEMYEAKYVISAIPPTLG  269 (520)
T ss_dssp             HHHHHHHHHH-GGGEESSCCEEEEECSS---SS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             HHHHHHHHHc-CCcEEcCCeeEEEEECC---Ce-EEEEECCCeEEEeCEEEECCCHHHH
Confidence            3445555443 57899999999998764   34 7788999989999999999998763

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.37  E-value=7.2e-12  Score=103.60  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             hHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          107 RQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       107 ~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      ...+.+.|.+.+++.+|+++++|++|..++  +.. +.|.+.+|+++.||.||.|.+...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~--~~~-v~v~~~~g~~~~ad~VI~t~p~~~  257 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREP--SKN-VTVNCEDGTVYNADYVIITVPQSV  257 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECT--TSC-EEEEETTSCEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcC--CCe-EEEEECCCcEEECCEEEECCCHHH
Confidence            455666677666556899999999998753  344 888999998899999999998654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.36  E-value=2.9e-12  Score=105.11  Aligned_cols=45  Identities=13%  Similarity=0.162  Sum_probs=38.6

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhh
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~  168 (232)
                      +++++.+++|++++.++   .. +.|.+.+|+++.||.||.|+|..+..
T Consensus       246 Gv~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTE---NC-YNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             TCEEESSCCEEEEEECS---SS-EEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCEEEeCCEEEEEEeeC---CE-EEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            79999999999998764   34 77888999899999999999987653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.36  E-value=4.5e-12  Score=102.19  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=43.5

Q ss_pred             HHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchhhhhhhc
Q 044609          109 SLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG  173 (232)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~~r~~~~  173 (232)
                      .+.+.|.+.++  |++++++++|++|..++   .. + | ..+|+++.||.||.|.|.+... ++++
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~-v-V-~~~g~~~~ad~Vv~a~~~~~~~-~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEE---KK-V-Y-TRDNEEYSFDVAISNVGVRETV-KLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTT---TE-E-E-ETTCCEEECSEEEECSCHHHHH-HHHC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEEC---CE-E-E-EeCCcEEEeCEEEECCCHHHHH-HhcC
Confidence            45555655543  78999999999998763   44 6 5 5677889999999999998654 4554

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.34  E-value=1.1e-11  Score=101.30  Aligned_cols=31  Identities=52%  Similarity=0.783  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ||+|||||++|+++|+.|++.|.+|+||||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999998

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.33  E-value=1.2e-11  Score=102.09  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=41.3

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                      ..+.+.|.+.++  +++++++++|++|..++   .   .+++.+|+++.||.||.+.-..
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~---~---~v~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANN---K---TVTLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTT---T---EEEETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccC---C---EEEEcCCCEEECCEEEECCCHH
Confidence            567888888775  67999999999998763   3   2457899999999999876543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.32  E-value=2.1e-12  Score=97.97  Aligned_cols=38  Identities=39%  Similarity=0.589  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |++||+||||||+||++|+.|+++|++|+||||.+.++
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            44899999999999999999999999999999998774

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.32  E-value=1.6e-11  Score=100.51  Aligned_cols=36  Identities=39%  Similarity=0.636  Sum_probs=33.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~   41 (232)
                      +||+|||||++||++|+.|+++|.  +|+|+|+.+.++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            699999999999999999999999  999999987664

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.31  E-value=2.2e-11  Score=100.16  Aligned_cols=60  Identities=25%  Similarity=0.441  Sum_probs=46.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceee-------e--------ecccHHHHHHHcCChHH
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAAL-------T--------LSPNAWLALDALGVSHK   65 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~-------~--------~~~~~~~~l~~~g~~~~   65 (232)
                      +||+|||||++|+++|+.|+++|++|+|+|+.+.++......       .        ..++..+.++++|+.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~  114 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNA  114 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcce
Confidence            799999999999999999999999999999998764321111       0        13456677778887543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.31  E-value=1.1e-12  Score=106.02  Aligned_cols=36  Identities=36%  Similarity=0.613  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +||+|||||++|+++|+.|++.|++|+|||+++.++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence            699999999999999999999999999999977653

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.30  E-value=6.8e-11  Score=96.14  Aligned_cols=41  Identities=41%  Similarity=0.687  Sum_probs=37.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |.++++||+|||||++|+++|+.|++.|++|+|+|+.+.++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            77778999999999999999999999999999999987764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.28  E-value=1.6e-12  Score=106.15  Aligned_cols=143  Identities=15%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeec-ccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS-PNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ++||+|||||++|+++|..|++.|++|+|||+. ..+  +...... ..+...+...++.+.+...... .++.  .  .
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~g--G~~~~~g~~psk~ll~~~~~~~~~~~~~~~-~g~~--~--~   74 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWG--GVCLNVGCIPSKALLRNAELVHIFTKDAKA-FGIS--G--E   74 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHTTT-TTEE--E--C
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCC--CcccccCchhhHHHHHHHHHHHHHHHHHHh-cCCC--C--C
Confidence            589999999999999999999999999999997 321  1110000 0112222322233333211111 1111  0  0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC--CCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL--PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV  159 (232)
                         ...++.....  . ....  ...+.+.+.+.+  .+++++.++.+.   .+   ... +.|.+.+|  .++.+|.||
T Consensus        75 ---~~~~~~~~~~--~-~~~~--~~~l~~~l~~~~~~~gv~~~~g~~~~---id---~~~-v~V~~~~G~~~~~~~d~lV  139 (464)
T 2a8x_A           75 ---VTFDYGIAYD--R-SRKV--AEGRVAGVHFLMKKNKITEIHGYGTF---AD---ANT-LLVDLNDGGTESVTFDNAI  139 (464)
T ss_dssp             ---CEECHHHHHH--H-HHHH--HHHHHHHHHHHHHHTTCEEECEEEEE---SS---SSE-EEEEETTSCCEEEEEEEEE
T ss_pred             ---CccCHHHHHH--H-HHHH--HHHHHHHHHHHHHhCCCEEEEeEEEE---ec---CCe-EEEEeCCCceEEEEcCEEE
Confidence               0111110000  0 0000  012222222222  278888887543   23   234 77888888  689999999


Q ss_pred             ecCCCchhhhh
Q 044609          160 GCDGVHSMVAQ  170 (232)
Q Consensus       160 ~A~G~~S~~r~  170 (232)
                      +|+|..+....
T Consensus       140 iAtG~~~~~~~  150 (464)
T 2a8x_A          140 IATGSSTRLVP  150 (464)
T ss_dssp             ECCCEEECCCT
T ss_pred             ECCCCCCCCCC
Confidence            99999875433

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.27  E-value=5e-11  Score=92.09  Aligned_cols=112  Identities=25%  Similarity=0.269  Sum_probs=73.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEE-EecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALV-LEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~v-iE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ..+||+|||||++|+++|..|+++|++|+| +||. .++...   ..                   . ..          
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~---~~-------------------~-~~----------   48 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQI---TS-------------------S-SE----------   48 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGG---GG-------------------C-SC----------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCcee---ee-------------------e-ce----------
Confidence            457999999999999999999999999999 9993 331110   00                   0 00          


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEE-EeCCCcEEEccEEE
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAII-NLGDSTIIKAKVLI  159 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v-~~~~g~~~~a~~vV  159 (232)
                           ...++.       ....+....+.+.+.+.+.  +++++.+ +|.++ .+++ ... +.+ ...++ ++.+|.||
T Consensus        49 -----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~-~~~-~~v~~~~~~-~~~~d~lv  111 (315)
T 3r9u_A           49 -----IENYPG-------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNS-DGS-FTIKLEGGK-TELAKAVI  111 (315)
T ss_dssp             -----BCCSTT-------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECT-TSC-EEEEETTSC-EEEEEEEE
T ss_pred             -----eccCCC-------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCC-CCc-EEEEEecCC-EEEeCEEE
Confidence                 000110       0113456677777766554  6888887 88898 5431 133 664 22344 89999999


Q ss_pred             ecCCCch
Q 044609          160 GCDGVHS  166 (232)
Q Consensus       160 ~A~G~~S  166 (232)
                      +|+|...
T Consensus       112 lAtG~~~  118 (315)
T 3r9u_A          112 VCTGSAP  118 (315)
T ss_dssp             ECCCEEE
T ss_pred             EeeCCCC
Confidence            9999854

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.26  E-value=4.3e-11  Score=101.25  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHH---h-CCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALR---R-LGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~---~-~g~~v~viE~~~~~   40 (232)
                      .++||+|||||++|+++|+.|+   + +|.+|+||||....
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            3489999999999999999999   6 89999999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.25  E-value=1.8e-11  Score=100.30  Aligned_cols=37  Identities=41%  Similarity=0.606  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            4689999999999999999999999999999997655

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.25  E-value=2.5e-11  Score=98.08  Aligned_cols=114  Identities=20%  Similarity=0.285  Sum_probs=72.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      |. +.+||+|||||++|+++|..|++.|.  +|+|||+.+......      +.         +...+..          
T Consensus         1 M~-~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~------~~---------l~~~~~~----------   54 (431)
T 1q1r_A            1 MN-ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL------PP---------LSKAYLA----------   54 (431)
T ss_dssp             -C-CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS------GG---------GGTTTTT----------
T ss_pred             CC-CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC------CC---------CcHHHhC----------
Confidence            54 46899999999999999999999998  799999876431100      00         0000000          


Q ss_pred             EEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           79 TNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                           +.   .         ........   ..+.+.+  .+++++.+++|+.+..++      ..|.+.+|+++.+|.|
T Consensus        55 -----~~---~---------~~~~~~~~---~~~~~~~--~gv~~~~~~~v~~i~~~~------~~v~~~~g~~~~~d~l  106 (431)
T 1q1r_A           55 -----GK---A---------TAESLYLR---TPDAYAA--QNIQLLGGTQVTAINRDR------QQVILSDGRALDYDRL  106 (431)
T ss_dssp             -----TC---S---------CSGGGBSS---CHHHHHH--TTEEEECSCCEEEEETTT------TEEEETTSCEEECSEE
T ss_pred             -----CC---C---------ChHHhccc---CHHHHHh--CCCEEEeCCEEEEEECCC------CEEEECCCCEEECCEE
Confidence                 00   0         00000000   1122332  278999999999997653      2356678888999999


Q ss_pred             EecCCCchhh
Q 044609          159 IGCDGVHSMV  168 (232)
Q Consensus       159 V~A~G~~S~~  168 (232)
                      |+|+|..+..
T Consensus       107 viAtG~~p~~  116 (431)
T 1q1r_A          107 VLATGGRPRP  116 (431)
T ss_dssp             EECCCEEECC
T ss_pred             EEcCCCCccC
Confidence            9999987643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.24  E-value=2.8e-12  Score=100.95  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG------IKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g------~~v~viE~~~~~   40 (232)
                      ||+|||||++|+++|+.|+++|      .+|+|||+....
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            8999999999999999999998      999999998643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.24  E-value=4.4e-11  Score=97.67  Aligned_cols=40  Identities=35%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      |+ ++|||+|||||++|+++|..|++.|++|+||||.+.++
T Consensus         1 M~-~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            1 MS-LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG   40 (466)
T ss_dssp             -C-EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS
T ss_pred             CC-ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            55 46999999999999999999999999999999877653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.24  E-value=1.9e-11  Score=99.69  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |.++++||+|||||++|+++|+.|++.|++|+||||.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6666799999999999999999999999999999994

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.24  E-value=1.7e-11  Score=103.62  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL------GIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~------g~~v~viE~~~~~   40 (232)
                      .++||+|||||++|+++|+.|++.      |.+|+||||....
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            458999999999999999999997      9999999998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.23  E-value=6e-12  Score=101.96  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=71.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVF   77 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~   77 (232)
                      |+.| .||+|||||++|+++|..|++   .|++|+|||+.+....       .+......          ....      
T Consensus         1 M~~m-~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~~~~~~----------~g~~------   56 (437)
T 3sx6_A            1 MRGS-AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPSNPWVG----------VGWK------   56 (437)
T ss_dssp             CTTS-CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGGHHHHH----------HTSS------
T ss_pred             CCCC-CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCCccccc----------cCcc------
Confidence            5544 699999999999999999999   8999999999873211       11100000          0000      


Q ss_pred             EEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccE
Q 044609           78 VTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKV  157 (232)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~  157 (232)
                                           ........   +.+.+.+  .+++++. .+|+++..++      ..|.+.+++++.+|.
T Consensus        57 ---------------------~~~~~~~~---l~~~~~~--~gv~~~~-~~v~~id~~~------~~V~~~~g~~i~~d~  103 (437)
T 3sx6_A           57 ---------------------ERDDIAFP---IRHYVER--KGIHFIA-QSAEQIDAEA------QNITLADGNTVHYDY  103 (437)
T ss_dssp             ---------------------CHHHHEEE---CHHHHHT--TTCEEEC-SCEEEEETTT------TEEEETTSCEEECSE
T ss_pred             ---------------------CHHHHHHH---HHHHHHH--CCCEEEE-eEEEEEEcCC------CEEEECCCCEEECCE
Confidence                                 00000011   1122222  2778764 6899987653      246778888899999


Q ss_pred             EEecCCCchhhhh
Q 044609          158 LIGCDGVHSMVAQ  170 (232)
Q Consensus       158 vV~A~G~~S~~r~  170 (232)
                      ||+|+|..+....
T Consensus       104 lviAtG~~~~~~~  116 (437)
T 3sx6_A          104 LMIATGPKLAFEN  116 (437)
T ss_dssp             EEECCCCEECGGG
T ss_pred             EEECCCCCcCccc
Confidence            9999999765443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.22  E-value=1.9e-11  Score=100.27  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +++||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4689999999999999999999999999999997655

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.21  E-value=1.8e-11  Score=100.10  Aligned_cols=38  Identities=42%  Similarity=0.631  Sum_probs=34.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||||++|+++|..|++.|++|+|||+.+.++
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~G   42 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            45899999999999999999999999999999987653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.21  E-value=3.7e-11  Score=97.66  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .+||+|||||++|+++|..|++.  +.+|+|||+.+.......+               +..              .  .
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~---------------~p~--------------~--~   51 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG---------------IPY--------------V--V   51 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC---------------Ccc--------------c--c
Confidence            46999999999999999999997  8899999998754211100               000              0  0


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEec
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGC  161 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A  161 (232)
                      .+.   ....        .   +. ....+.+.+. .+++++.+++|+++..+.      ..+.+.++ .++.+|.||+|
T Consensus        52 ~~~---~~~~--------~---~~-~~~~~~~~~~-~gi~v~~~~~v~~i~~~~------~~v~~~~g~~~~~~d~lviA  109 (449)
T 3kd9_A           52 EGL---STPD--------K---LM-YYPPEVFIKK-RGIDLHLNAEVIEVDTGY------VRVRENGGEKSYEWDYLVFA  109 (449)
T ss_dssp             -----------------------------CTHHHH-TTCEEETTCEEEEECSSE------EEEECSSSEEEEECSEEEEC
T ss_pred             CCC---CCHH--------H---hh-hcCHHHHHHh-cCcEEEecCEEEEEecCC------CEEEECCceEEEEcCEEEEC
Confidence            000   0000        0   00 0001122222 278999999999986442      55667777 48999999999


Q ss_pred             CCCch
Q 044609          162 DGVHS  166 (232)
Q Consensus       162 ~G~~S  166 (232)
                      +|...
T Consensus       110 tG~~p  114 (449)
T 3kd9_A          110 NGASP  114 (449)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.20  E-value=1.8e-11  Score=98.55  Aligned_cols=110  Identities=25%  Similarity=0.377  Sum_probs=71.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIK--ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~--v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +.+||+|||||++|+++|..|++.|.+  |+|||+.+......      +         .+..    ...          
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~------~---------~l~~----~~~----------   58 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYER------P---------PLSK----EYL----------   58 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCS------G---------GGGT----TTT----------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCc------c---------cCCH----HHH----------
Confidence            458999999999999999999999987  99999987542110      0         0000    000          


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                       .+.   .         .........   .+.+.+  .+++++.+++|+.+..+.      ..|.+.+|+++.+|.||+|
T Consensus        59 -~~~---~---------~~~~~~~~~---~~~~~~--~~i~~~~~~~v~~id~~~------~~v~~~~g~~~~~d~lvlA  114 (415)
T 3lxd_A           59 -ARE---K---------TFERICIRP---AQFWED--KAVEMKLGAEVVSLDPAA------HTVKLGDGSAIEYGKLIWA  114 (415)
T ss_dssp             -TTS---S---------CSGGGBSSC---HHHHHH--TTEEEEETCCEEEEETTT------TEEEETTSCEEEEEEEEEC
T ss_pred             -cCC---C---------CHHHhccCC---HHHHHH--CCcEEEeCCEEEEEECCC------CEEEECCCCEEEeeEEEEc
Confidence             000   0         000001111   122222  278999999999997653      3467788989999999999


Q ss_pred             CCCch
Q 044609          162 DGVHS  166 (232)
Q Consensus       162 ~G~~S  166 (232)
                      +|...
T Consensus       115 tG~~~  119 (415)
T 3lxd_A          115 TGGDP  119 (415)
T ss_dssp             CCEEC
T ss_pred             cCCcc
Confidence            99654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.17  E-value=2.5e-10  Score=93.77  Aligned_cols=54  Identities=17%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             HHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEecCCCc
Q 044609          108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGCDGVH  165 (232)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A~G~~  165 (232)
                      ..+.+.|.+.+...+++++++|++|..++   .. +.|.+.+|   +++.||.||.|....
T Consensus       239 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGTDNIVFGAEVTSMKNVS---EG-VTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCGGGEETTCEEEEEEEET---TE-EEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCCCeEEECCEEEEEEEcC---Ce-EEEEEecCCeEEEEECCEEEECCCHH
Confidence            45777777766447899999999998864   34 77877776   579999999999765

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.16  E-value=9.2e-11  Score=95.91  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      .+||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999998  9999999998765

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.16  E-value=1.4e-10  Score=99.64  Aligned_cols=51  Identities=22%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             HHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609          108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                      ..+.+.|.+   +++|+++++|++|..++   .. +.|++.+|+++.||.||+|....
T Consensus       534 ~~l~~aLa~---gl~I~l~t~V~~I~~~~---~~-v~V~~~~G~~i~Ad~VIvA~P~~  584 (776)
T 4gut_A          534 SVIIEKLAE---GLDIQLKSPVQCIDYSG---DE-VQVTTTDGTGYSAQKVLVTVPLA  584 (776)
T ss_dssp             HHHHHHHHT---TSCEESSCCEEEEECSS---SS-EEEEETTCCEEEESEEEECCCHH
T ss_pred             HHHHHHHHh---CCcEEcCCeeEEEEEcC---CE-EEEEECCCcEEEcCEEEECCCHH
Confidence            355566654   67899999999998764   44 78889999899999999999653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.15  E-value=3.9e-10  Score=91.45  Aligned_cols=55  Identities=11%  Similarity=0.047  Sum_probs=40.6

Q ss_pred             HHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609          109 SLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                      .+.+.|.+.+.  |++++++++|++|..+++ +.. +.|.+.+|+++.||.||.|.|..
T Consensus       257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v-~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKV-CGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHHHHHC--CEESSCCEEEEEECTT-SCE-EEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeE-EEEEECCCcEEECCEEEECCCcc
Confidence            34444444433  789999999999998332 454 78889999999999999999887

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.15  E-value=4.8e-11  Score=98.05  Aligned_cols=38  Identities=34%  Similarity=0.610  Sum_probs=33.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+++||+|||||++|+++|..|++.|++|+||||.+.+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            46799999999999999999999999999999997665

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.14  E-value=1.2e-10  Score=93.51  Aligned_cols=107  Identities=23%  Similarity=0.325  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK--ALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~--v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+|+|||||++|+++|..|++.|.+  |+|||+.+......      +.         +...+......           
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~------~~---------l~~~~~~g~~~-----------   56 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR------PS---------LSKAVLDGSLE-----------   56 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS------GG---------GGTHHHHTSSS-----------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCC------cc---------ccHHHhCCCCC-----------
Confidence            4899999999999999999999987  99999987542110      00         00000000000           


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                                      .... ...   .+.+.+.  +++++.+++|+.+..+.      ..|.+.+|+++.+|.||+|+|
T Consensus        57 ----------------~~~~-~~~---~~~~~~~--~i~~~~~~~v~~id~~~------~~v~~~~g~~~~~d~lvlAtG  108 (410)
T 3ef6_A           57 ----------------RPPI-LAE---ADWYGEA--RIDMLTGPEVTALDVQT------RTISLDDGTTLSADAIVIATG  108 (410)
T ss_dssp             ----------------SCCB-SSC---TTHHHHT--TCEEEESCCEEEEETTT------TEEEETTSCEEECSEEEECCC
T ss_pred             ----------------HHHh-cCC---HHHHHHC--CCEEEeCCEEEEEECCC------CEEEECCCCEEECCEEEEccC
Confidence                            0000 000   1122222  78999999999997653      346778898999999999999


Q ss_pred             Cch
Q 044609          164 VHS  166 (232)
Q Consensus       164 ~~S  166 (232)
                      ...
T Consensus       109 ~~p  111 (410)
T 3ef6_A          109 SRA  111 (410)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.12  E-value=6.9e-11  Score=96.12  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..+....++...                               ..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~-------------------------------~~   51 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY-------------------------------FN   51 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh-------------------------------hc
Confidence            5999999999999999999998  89999999988653211110000                               00


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCCcEEEccEEEecC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDSTIIKAKVLIGCD  162 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~~~~a~~vV~A~  162 (232)
                      +...  ...        ......    .+.+.+.  +++++++++|+++..++   .. +.+.. .++.++.+|.||+|+
T Consensus        52 ~~~~--~~~--------~~~~~~----~~~~~~~--gi~~~~~~~V~~id~~~---~~-v~v~~~~~~~~~~~d~lviAt  111 (452)
T 3oc4_A           52 HTIN--ELH--------EARYIT----EEELRRQ--KIQLLLNREVVAMDVEN---QL-IAWTRKEEQQWYSYDKLILAT  111 (452)
T ss_dssp             -------------------CCCC----HHHHHHT--TEEEECSCEEEEEETTT---TE-EEEEETTEEEEEECSEEEECC
T ss_pred             CCCC--CHH--------HhhcCC----HHHHHHC--CCEEEECCEEEEEECCC---CE-EEEEecCceEEEEcCEEEECC
Confidence            0000  000        000001    1222222  78889999999998763   33 55542 345689999999999


Q ss_pred             CCchh
Q 044609          163 GVHSM  167 (232)
Q Consensus       163 G~~S~  167 (232)
                      |....
T Consensus       112 G~~p~  116 (452)
T 3oc4_A          112 GASQF  116 (452)
T ss_dssp             CCCBC
T ss_pred             CcccC
Confidence            98653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.11  E-value=3.3e-10  Score=90.16  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=71.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +.+|+|||||++|+++|..|.+.+.+|+|||+.+......      +.....+          ....             
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~------~~l~~~l----------~g~~-------------   59 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYR------PRLNEII----------AKNK-------------   59 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCG------GGHHHHH----------HSCC-------------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCccc------ChhhHHH----------cCCC-------------
Confidence            4799999999999999999977899999999987642110      1000000          0000             


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                           +..         ......   .+.+.+.  +++++++++|+++..++      ..|++.+|+++.+|.||+|+|.
T Consensus        60 -----~~~---------~l~~~~---~~~~~~~--~i~~~~~~~V~~id~~~------~~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           60 -----SID---------DILIKK---NDWYEKN--NIKVITSEFATSIDPNN------KLVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             -----CGG---------GTBSSC---HHHHHHT--TCEEECSCCEEEEETTT------TEEEETTSCEEECSEEEECCCE
T ss_pred             -----CHH---------HccCCC---HHHHHHC--CCEEEeCCEEEEEECCC------CEEEECCCCEEECCEEEEecCC
Confidence                 000         000111   1222222  78999999999997653      3467789999999999999997


Q ss_pred             ch
Q 044609          165 HS  166 (232)
Q Consensus       165 ~S  166 (232)
                      ..
T Consensus       115 ~p  116 (385)
T 3klj_A          115 IA  116 (385)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.11  E-value=1e-10  Score=95.76  Aligned_cols=38  Identities=34%  Similarity=0.669  Sum_probs=34.9

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            35689999999999999999999999999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.11  E-value=2.1e-10  Score=93.65  Aligned_cols=36  Identities=36%  Similarity=0.616  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            589999999999999999999999999999998665

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.11  E-value=2.4e-10  Score=93.07  Aligned_cols=34  Identities=32%  Similarity=0.643  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4589999999999999999999999999999997

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.10  E-value=3.4e-10  Score=90.88  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=70.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +++||+|||||++|+++|..|++.|.  +|+|||+.+......      +.         +...+..... .        
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~------~~---------~~~~~~~~~~-~--------   61 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR------PP---------LSKDFMAHGD-A--------   61 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS------GG---------GGTHHHHHCC-G--------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccC------CC---------CCHHHhCCCc-h--------
Confidence            45899999999999999999999988  599999986532110      00         0000000000 0        


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                                .      .   ..+.       ..+. .+++++.+++|+++..+.      ..|.+.+|+++.+|.||+|
T Consensus        62 ----------~------~---~~~~-------~~~~-~~v~~~~~~~v~~i~~~~------~~v~~~~g~~~~~d~lviA  108 (408)
T 2gqw_A           62 ----------E------K---IRLD-------CKRA-PEVEWLLGVTAQSFDPQA------HTVALSDGRTLPYGTLVLA  108 (408)
T ss_dssp             ----------G------G---SBCC-------CTTS-CSCEEEETCCEEEEETTT------TEEEETTSCEEECSEEEEC
T ss_pred             ----------h------h---hhHH-------HHHH-CCCEEEcCCEEEEEECCC------CEEEECCCCEEECCEEEEC
Confidence                      0      0   0010       1111 278999999999987642      3466778888999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|.....
T Consensus       109 tG~~~~~  115 (408)
T 2gqw_A          109 TGAAPRA  115 (408)
T ss_dssp             CCEEECC
T ss_pred             CCCCCCC
Confidence            9986543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.10  E-value=8.9e-11  Score=94.27  Aligned_cols=32  Identities=28%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHh---CCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRR---LGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~   38 (232)
                      ||+|||||++|+++|..|++   .|++|+|||+++
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            79999999999999999999   899999999987

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.09  E-value=2.8e-11  Score=99.61  Aligned_cols=65  Identities=6%  Similarity=0.051  Sum_probs=46.4

Q ss_pred             eeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCC----ccEEEEeCCC-----cEEEccEEEecCCCchhh
Q 044609          104 SVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGS----SAAIINLGDS-----TIIKAKVLIGCDGVHSMV  168 (232)
Q Consensus       104 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~----~~~~v~~~~g-----~~~~a~~vV~A~G~~S~~  168 (232)
                      ...|.++.++|...+.  +..++++++|+++++.+.++.    ..+.|++.++     .++.|+.||+|+|....+
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~i  216 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKM  216 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCC
Confidence            5678888888877654  457999999999987542111    1277776543     368999999999965433

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.07  E-value=1.1e-10  Score=95.05  Aligned_cols=36  Identities=39%  Similarity=0.605  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            379999999999999999999999999999998655

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.05  E-value=6e-10  Score=93.54  Aligned_cols=114  Identities=18%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      +.+||+|||||++|+++|..|++.  |.+|+|||+.+......       ..+.        ..+.....          
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~-------~~lp--------~~~~g~~~----------   89 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFAN-------CGLP--------YYIGGVIT----------   89 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG-------GGHH--------HHHTTSSC----------
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccC-------CCCc--------hhhcCcCC----------
Confidence            347999999999999999999998  89999999988653111       1110        00000000          


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccEE
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKVL  158 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~v  158 (232)
                              .        .... ...  . .+.+.+.. +++++++++|+++..++   .. +.+.. .+|.  ++.+|.|
T Consensus        90 --------~--------~~~~-~~~--~-~~~~~~~~-gi~v~~~~~V~~id~~~---~~-v~v~~~~~g~~~~~~~d~l  144 (588)
T 3ics_A           90 --------E--------RQKL-LVQ--T-VERMSKRF-NLDIRVLSEVVKINKEE---KT-ITIKNVTTNETYNEAYDVL  144 (588)
T ss_dssp             --------C--------GGGG-BSS--C-HHHHHHHT-TCEEECSEEEEEEETTT---TE-EEEEETTTCCEEEEECSEE
T ss_pred             --------C--------hHHh-hcc--C-HHHHHHhc-CcEEEECCEEEEEECCC---CE-EEEeecCCCCEEEEeCCEE
Confidence                    0        0000 000  0 22233222 78899999999998763   43 55554 4565  7899999


Q ss_pred             EecCCCchh
Q 044609          159 IGCDGVHSM  167 (232)
Q Consensus       159 V~A~G~~S~  167 (232)
                      |+|+|....
T Consensus       145 viAtG~~p~  153 (588)
T 3ics_A          145 ILSPGAKPI  153 (588)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCCC
Confidence            999997543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.05  E-value=7e-10  Score=90.87  Aligned_cols=112  Identities=17%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+......+       ....        .+ .. .            
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~--------~~-~~-~------------   87 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-------GLPY--------VI-SG-A------------   87 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-------GHHH--------HH-TT-S------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-------Ccch--------hh-cC-C------------
Confidence            5999999999999999999996  899999999876532111       0110        00 00 0            


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~vV~  160 (232)
                        .  .++....        ..    ..+.+.+. .+++++.+++|+.+..++   .. +.+.. .+|+  ++.+|.||+
T Consensus        88 --~--~~~~~l~--------~~----~~~~~~~~-~gv~~~~~~~v~~i~~~~---~~-v~v~~~~~g~~~~~~~d~lvi  146 (480)
T 3cgb_A           88 --I--ASTEKLI--------AR----NVKTFRDK-YGIDAKVRHEVTKVDTEK---KI-VYAEHTKTKDVFEFSYDRLLI  146 (480)
T ss_dssp             --S--SCGGGGB--------SS----CHHHHHHT-TCCEEESSEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEE
T ss_pred             --c--CCHHHhh--------hc----CHHHHHhh-cCCEEEeCCEEEEEECCC---CE-EEEEEcCCCceEEEEcCEEEE
Confidence              0  0000000        00    02233332 278999999999997653   34 66665 4566  799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       147 AtG~~p~  153 (480)
T 3cgb_A          147 ATGVRPV  153 (480)
T ss_dssp             CCCEEEC
T ss_pred             CCCCccc
Confidence            9997654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.03  E-value=4e-10  Score=92.55  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .++||+|||||++|+++|..|++. ++|+|||+.+.++..-.                      ....            
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~----------------------~~~~------------  151 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW----------------------LKGI------------  151 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG----------------------GTCS------------
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee----------------------cccc------------
Confidence            357999999999999999999999 99999999876532100                      0000            


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC-CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccEEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP-DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKVLI  159 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~vV  159 (232)
                         ..      .   ....   ....+.+.+.+.+. +++++++++|.++..+.   .. +.+.. .+++  ++.+|.||
T Consensus       152 ---~~------~---g~~~---~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~---~~-~~~~~~~~~~~~~~~~d~lv  212 (493)
T 1y56_A          152 ---KQ------E---GFNK---DSRKVVEELVGKLNENTKIYLETSALGVFDKG---EY-FLVPVVRGDKLIEILAKRVV  212 (493)
T ss_dssp             ---EE------T---TTTE---EHHHHHHHHHHTCCTTEEEETTEEECCCEECS---SS-EEEEEEETTEEEEEEESCEE
T ss_pred             ---cc------C---CCCC---CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCC---cE-EEEEEecCCeEEEEECCEEE
Confidence               00      0   0001   33445555555443 78889999999887764   33 43433 4453  68999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      +|+|....
T Consensus       213 lAtGa~~~  220 (493)
T 1y56_A          213 LATGAIDS  220 (493)
T ss_dssp             ECCCEEEC
T ss_pred             ECCCCCcc
Confidence            99998653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.03  E-value=1.5e-10  Score=94.68  Aligned_cols=37  Identities=38%  Similarity=0.625  Sum_probs=34.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++|||+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            4699999999999999999999999999999998744

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.03  E-value=8.9e-10  Score=89.03  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+|+|||||++|+++|..|++.+  ++|+|||+++..       .+.|....+.-  |        ......        
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~-------~~~p~l~~v~~--g--------~~~~~~--------   57 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF-------GFTPAFPHLAM--G--------WRKFED--------   57 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE-------ECGGGHHHHHH--T--------CSCGGG--------
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC-------ccCccHHHHhc--C--------CCCHHH--------
Confidence            47999999999999999999864  799999987642       11221111100  0        000000        


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                         ...++.                   +.+.+.  +++++.+ +|++|..+.      -.|++.+|+++.+|+||+|+|
T Consensus        58 ---i~~~~~-------------------~~~~~~--gv~~i~~-~v~~Id~~~------~~V~~~~g~~i~YD~LViAtG  106 (430)
T 3hyw_A           58 ---ISVPLA-------------------PLLPKF--NIEFINE-KAESIDPDA------NTVTTQSGKKIEYDYLVIATG  106 (430)
T ss_dssp             ---SEEEST-------------------TTGGGG--TEEEECS-CEEEEETTT------TEEEETTCCEEECSEEEECCC
T ss_pred             ---hhhcHH-------------------HHHHHC--CcEEEEe-EEEEEECCC------CEEEECCCCEEECCEEEEeCC
Confidence               001110                   111111  6777665 788997653      346789999999999999999


Q ss_pred             Cc
Q 044609          164 VH  165 (232)
Q Consensus       164 ~~  165 (232)
                      ..
T Consensus       107 ~~  108 (430)
T 3hyw_A          107 PK  108 (430)
T ss_dssp             CE
T ss_pred             CC
Confidence            75

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.02  E-value=1.9e-09  Score=88.07  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |+ .++||+|||||++|+++|..|++.|++|+|||++
T Consensus         1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            1 ME-PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CC-CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            54 4689999999999999999999999999999997

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.01  E-value=1.2e-09  Score=86.49  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .||+|||||++|+++|..|++.| +|+|||+.+......      +. +         .....               +.
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~------~~-l---------~~~~~---------------g~   56 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSK------PM-L---------SHYIA---------------GF   56 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCS------TT-H---------HHHHT---------------TS
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcccc------ch-h---------HHHHh---------------CC
Confidence            69999999999999999999999 999999987542100      00 0         00000               00


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                         .++....         ...   .+.+.+.  +++++.+++|+.+..+.      ..|. .+|+++.+|.||+|+|..
T Consensus        57 ---~~~~~~~---------~~~---~~~~~~~--~v~~~~g~~v~~id~~~------~~V~-~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           57 ---IPRNRLF---------PYS---LDWYRKR--GIEIRLAEEAKLIDRGR------KVVI-TEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             ---SCGGGGC---------SSC---HHHHHHH--TEEEECSCCEEEEETTT------TEEE-ESSCEEECSEEEECCCEE
T ss_pred             ---CCHHHhc---------cCC---HHHHHhC--CcEEEECCEEEEEECCC------CEEE-ECCcEEECCEEEECCCCC
Confidence               0000000         001   1223222  78999999999987542      3344 577889999999999975


Q ss_pred             h
Q 044609          166 S  166 (232)
Q Consensus       166 S  166 (232)
                      .
T Consensus       113 p  113 (367)
T 1xhc_A          113 A  113 (367)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.01  E-value=2e-10  Score=92.07  Aligned_cols=107  Identities=21%  Similarity=0.267  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .||+|||||++|+++|..|++.|+  +|+|||+.+......      +         .+...+..              .
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~------~---------~l~~~~l~--------------~   52 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQR------P---------PLSKAYLK--------------S   52 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCS------G---------GGGTGGGG--------------S
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCC------c---------cCCHHHHC--------------C
Confidence            589999999999999999999998  899999987432110      0         00000000              0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                          ..         .........   .+.+.+.  +++++. ++|+++..+.      ..|.+.+|+++.+|.||+|+|
T Consensus        53 ----~~---------~~~~~~~~~---~~~~~~~--~i~~~~-~~v~~id~~~------~~v~~~~g~~~~~d~lvlAtG  107 (404)
T 3fg2_P           53 ----GG---------DPNSLMFRP---EKFFQDQ--AIELIS-DRMVSIDREG------RKLLLASGTAIEYGHLVLATG  107 (404)
T ss_dssp             ----CC---------CTTSSBSSC---HHHHHHT--TEEEEC-CCEEEEETTT------TEEEESSSCEEECSEEEECCC
T ss_pred             ----CC---------CHHHccCCC---HHHHHhC--CCEEEE-EEEEEEECCC------CEEEECCCCEEECCEEEEeeC
Confidence                00         000001111   1222222  778888 8999997653      346678898999999999999


Q ss_pred             Cch
Q 044609          164 VHS  166 (232)
Q Consensus       164 ~~S  166 (232)
                      ...
T Consensus       108 ~~p  110 (404)
T 3fg2_P          108 ARN  110 (404)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.01  E-value=6.7e-10  Score=91.42  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL---GIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~   38 (232)
                      ++||+|||||++|+++|..|++.   |++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999998   99999999987

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.00  E-value=2.5e-10  Score=92.86  Aligned_cols=113  Identities=15%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.....++       ....  .+      ...   ..         
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~--~~------~g~---~~---------   53 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-------GIAL--YL------GKE---IK---------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-------GHHH--HH------TTC---BG---------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-------cchh--hh------cCC---cc---------
Confidence            5899999999999999999998  999999999875422211       1110  00      000   00         


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-C--CcEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-D--STIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~--g~~~~a~~vV~  160 (232)
                          ..+....         ...   +.+.+.+  .+++++.+++|..+..++   .. +.+... +  +.++.+|.||+
T Consensus        54 ----~~~~~~~---------~~~---~~~~~~~--~gv~~~~~~~v~~i~~~~---~~-v~v~~~~~g~~~~~~~d~lvi  111 (452)
T 2cdu_A           54 ----NNDPRGL---------FYS---SPEELSN--LGANVQMRHQVTNVDPET---KT-IKVKDLITNEEKTEAYDKLIM  111 (452)
T ss_dssp             ----GGCGGGG---------BSC---CHHHHHH--TTCEEEESEEEEEEEGGG---TE-EEEEETTTCCEEEEECSEEEE
T ss_pred             ----cCCHHHh---------hhc---CHHHHHH--cCCEEEeCCEEEEEEcCC---CE-EEEEecCCCceEEEECCEEEE
Confidence                0000000         000   0122222  278999999999997653   33 655542 2  45799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       112 AtGs~p~  118 (452)
T 2cdu_A          112 TTGSKPT  118 (452)
T ss_dssp             CCCEEEC
T ss_pred             ccCCCcC
Confidence            9997654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.00  E-value=3.3e-09  Score=87.71  Aligned_cols=35  Identities=37%  Similarity=0.565  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|||+||||||+|+++|..|++.|++|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            35899999999999999999999999999999965

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.99  E-value=3.1e-09  Score=84.59  Aligned_cols=101  Identities=15%  Similarity=0.244  Sum_probs=75.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            358999999999999999999999999999987643110                                         


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                               ..   +.    -....+.+.+.+  .+++++++++|+++..++   .. +.+.+.+|+++.||.||.|+|.
T Consensus       184 ---------~~---~~----~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~d~vv~a~G~  241 (384)
T 2v3a_A          184 ---------LL---HP----AAAKAVQAGLEG--LGVRFHLGPVLASLKKAG---EG-LEAHLSDGEVIPCDLVVSAVGL  241 (384)
T ss_dssp             ---------TS---CH----HHHHHHHHHHHT--TTCEEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCE
T ss_pred             ---------cc---CH----HHHHHHHHHHHH--cCCEEEeCCEEEEEEecC---CE-EEEEECCCCEEECCEEEECcCC
Confidence                     00   00    012233344443  289999999999998753   34 7788889999999999999998


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      .+..
T Consensus       242 ~p~~  245 (384)
T 2v3a_A          242 RPRT  245 (384)
T ss_dssp             EECC
T ss_pred             CcCH
Confidence            8753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.99  E-value=2e-09  Score=87.39  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.....+       .....  .+      .....            
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~-------~~~~~--~~------~~~~~------------   53 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS-------AGMQL--YL------EGKVK------------   53 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG-------GGHHH--HH------TTSSC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCccc-------ccchh--hh------cCccC------------
Confidence            3899999999999999999997  99999999987543211       11110  00      00000            


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~vV~  160 (232)
                            +....         ...   +.+.+.+.  +++++.+++|.++..++   .. +.+.. .+|+  ++.+|.||+
T Consensus        54 ------~~~~~---------~~~---~~~~~~~~--gv~~~~~~~v~~i~~~~---~~-v~~~~~~~g~~~~~~~d~lvi  109 (447)
T 1nhp_A           54 ------DVNSV---------RYM---TGEKMESR--GVNVFSNTEITAIQPKE---HQ-VTVKDLVSGEERVENYDKLII  109 (447)
T ss_dssp             ------CGGGS---------BSC---CHHHHHHT--TCEEEETEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEE
T ss_pred             ------CHHHh---------hcC---CHHHHHHC--CCEEEECCEEEEEeCCC---CE-EEEEecCCCceEEEeCCEEEE
Confidence                  00000         000   01233332  78999999999987653   33 66654 3465  489999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       110 AtG~~p~  116 (447)
T 1nhp_A          110 SPGAVPF  116 (447)
T ss_dssp             CCCEEEC
T ss_pred             cCCCCcC
Confidence            9997653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.99  E-value=7.3e-09  Score=84.26  Aligned_cols=99  Identities=20%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+.+...                  ...                     
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~~~---------------------  208 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT------------------MDL---------------------  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                         -....+.+.|.+.  +++++.+++|+++..++   .. +.+.+.+|+++.+|.||.|+|..
T Consensus       209 -------------------~~~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          209 -------------------EVSRAAERVFKKQ--GLTIRTGVRVTAVVPEA---KG-ARVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             -------------------HHHHHHHHHHHHH--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEEeC---CE-EEEEECCCeEEEcCEEEECcCCC
Confidence                               0012233444443  89999999999998763   34 67777888899999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      +..
T Consensus       264 p~~  266 (455)
T 2yqu_A          264 PYT  266 (455)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.97  E-value=8.1e-10  Score=85.99  Aligned_cols=37  Identities=32%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRR--LGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~--~g~~v~viE~~~~~~   41 (232)
                      ++||+||||||+|+++|+.|++  .|++|+||||.+.++
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            4899999999999999999975  599999999988764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.97  E-value=9.4e-10  Score=87.57  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=31.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~   38 (232)
                      |. +++||+|||||++|+++|..|++.|  .+|+++|++.
T Consensus         1 M~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            1 MS-ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             ----CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CC-CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            44 4589999999999999999999998  5689999875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.96  E-value=2.1e-09  Score=88.28  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      .++||+|||||++|+++|..|++.  |.+|+|||+.+.......     +-+...+  .+.......      ...+...
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~-----~lsk~l~--~~~~~~~~~------~~~~~~~   76 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-----PLSKELW--FSDDPNVTK------TLRFKQW   76 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-----GGGTGGG--CC--CTHHH------HCEEECT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-----CCCHHhh--cCCccchhh------ccccccc
Confidence            458999999999999999999876  899999999875421100     0000000  000000000      0011100


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhC-CCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADEL-PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                       .+....+.+....       .......    +.+.. .+++++.+++|+++..++      ..|.+.+|+++.+|.||+
T Consensus        77 -~~~~~~~~~~~~~-------~~~~~~~----l~~~~~~gv~~~~g~~v~~id~~~------~~V~~~~g~~i~yd~lvi  138 (493)
T 1m6i_A           77 -NGKERSIYFQPPS-------FYVSAQD----LPHIENGGVAVLTGKKVVQLDVRD------NMVKLNDGSQITYEKCLI  138 (493)
T ss_dssp             -TSCEEESBSSCGG-------GSBCTTT----TTTSTTCEEEEEETCCEEEEEGGG------TEEEETTSCEEEEEEEEE
T ss_pred             -ccccccccccchH-------hhcchhh----hhhhhcCCeEEEcCCEEEEEECCC------CEEEECCCCEEECCEEEE
Confidence             0000111111000       0111111    11111 268899999999997653      346678898999999999


Q ss_pred             cCCCch
Q 044609          161 CDGVHS  166 (232)
Q Consensus       161 A~G~~S  166 (232)
                      |+|...
T Consensus       139 ATGs~p  144 (493)
T 1m6i_A          139 ATGGTP  144 (493)
T ss_dssp             CCCEEE
T ss_pred             CCCCCC
Confidence            999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.94  E-value=3.5e-09  Score=86.92  Aligned_cols=36  Identities=33%  Similarity=0.460  Sum_probs=33.0

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .++|||+|||||++|+++|..|++.|++|+||||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            356999999999999999999999999999999843

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.93  E-value=6.1e-09  Score=85.39  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ++|||+|||||++|+++|..|++.|++|+||||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4699999999999999999999999999999964

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.91  E-value=5.7e-09  Score=87.18  Aligned_cols=111  Identities=16%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ||+|||||++|+++|..|++.  +.+|+|||+.+.....       +..+..        .+                .+
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~-------~~~l~~--------~~----------------~~   51 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA-------NCGLPY--------HI----------------SG   51 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-------GGGHHH--------HH----------------TS
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-------ccCchH--------Hh----------------cC
Confidence            899999999999999999997  8899999998765311       111110        00                00


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~~vV~A  161 (232)
                      ..     .      .........   .+.+.+.. +++++++++|+++..+.   .. +.+.. .+|.  ++.+|.||+|
T Consensus        52 ~~-----~------~~~~~~~~~---~~~~~~~~-~i~~~~~~~V~~id~~~---~~-v~~~~~~~g~~~~~~~d~lviA  112 (565)
T 3ntd_A           52 EI-----A------QRSALVLQT---PESFKARF-NVEVRVKHEVVAIDRAA---KL-VTVRRLLDGSEYQESYDTLLLS  112 (565)
T ss_dssp             SS-----C------CGGGGBCCC---HHHHHHHH-CCEEETTEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEEC
T ss_pred             Cc-----C------ChHHhhccC---HHHHHHhc-CcEEEECCEEEEEECCC---CE-EEEEecCCCCeEEEECCEEEEC
Confidence            00     0      000000110   12222221 78899999999998763   43 55554 3343  7899999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       113 tG~~p~  118 (565)
T 3ntd_A          113 PGAAPI  118 (565)
T ss_dssp             CCEEEC
T ss_pred             CCCCCC
Confidence            998543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.90  E-value=1.9e-08  Score=81.76  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=75.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                  +..                     
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  208 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------FDP---------------------  208 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh------------------hhH---------------------
Confidence            58999999999999999999999999999987643100                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                         -....+.+.|.+.  +++++++++|++++.++  +.. +.|.+.+|+++.+|.||.|+|..
T Consensus       209 -------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          209 -------------------MISETLVEVMNAE--GPQLHTNAIPKAVVKNT--DGS-LTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             -------------------HHHHHHHHHHHHH--SCEEECSCCEEEEEECT--TSC-EEEEETTSCEEEESEEEECSCEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC--CcE-EEEEECCCcEEEcCEEEECCCCC
Confidence                               0122334444443  89999999999998754  233 67888899899999999999988


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      +..
T Consensus       265 p~~  267 (450)
T 1ges_A          265 PAN  267 (450)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.89  E-value=1.5e-08  Score=81.00  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+|+|||||++|+++|..|++.+  .+|+|||+++.....       +.          +..+.......          
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~----------~~~v~~g~~~~----------   55 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-------YM----------SNEVIGGDREL----------   55 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-------TT----------HHHHHHTSSCG----------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-------cC----------HHHHhcCCCCH----------
Confidence            47999999999999999998865  689999987642111       11          11111000000          


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                                       ........    .+.+  .+++++.+ +|+++..+.      -.|.+.+|.++.+|.||+|+|
T Consensus        56 -----------------~~~~~~~~----~~~~--~gv~~i~~-~v~~id~~~------~~v~~~~g~~i~yd~LviAtG  105 (401)
T 3vrd_B           56 -----------------ASLRVGYD----GLRA--HGIQVVHD-SALGIDPDK------KLVKTAGGAEFAYDRCVVAPG  105 (401)
T ss_dssp             -----------------GGGEECSH----HHHH--TTCEEECS-CEEEEETTT------TEEEETTSCEEECSEEEECCC
T ss_pred             -----------------HHHhhCHH----HHHH--CCCEEEEe-EEEEEEccC------cEEEecccceeecceeeeccC
Confidence                             00011111    1222  26777654 788887653      346788999999999999999


Q ss_pred             Cchh
Q 044609          164 VHSM  167 (232)
Q Consensus       164 ~~S~  167 (232)
                      ....
T Consensus       106 ~~~~  109 (401)
T 3vrd_B          106 IDLL  109 (401)
T ss_dssp             EEEC
T ss_pred             Cccc
Confidence            7643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.89  E-value=9.7e-09  Score=83.75  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=73.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  207 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------------------------------  207 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            58999999999999999999999999999987654111                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-C--Cc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-D--ST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~--g~--~~~a~~vV~  160 (232)
                           +       ..    -....+.+.|.+.  +++++++++|+++..++   .. +.+.+. +  |+  ++.+|.||.
T Consensus       208 -----~-------~~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vv~  265 (464)
T 2eq6_A          208 -----G-------DP----ETAALLRRALEKE--GIRVRTKTKAVGYEKKK---DG-LHVRLEPAEGGEGEEVVVDKVLV  265 (464)
T ss_dssp             -----S-------CH----HHHHHHHHHHHHT--TCEEECSEEEEEEEEET---TE-EEEEEEETTCCSCEEEEESEEEE
T ss_pred             -----c-------CH----HHHHHHHHHHHhc--CCEEEcCCEEEEEEEeC---CE-EEEEEeecCCCceeEEEcCEEEE
Confidence                 0       00    0012234444443  89999999999998753   33 556665 5  76  899999999


Q ss_pred             cCCCchhh
Q 044609          161 CDGVHSMV  168 (232)
Q Consensus       161 A~G~~S~~  168 (232)
                      |+|..+..
T Consensus       266 a~G~~p~~  273 (464)
T 2eq6_A          266 AVGRKPRT  273 (464)
T ss_dssp             CSCEEESC
T ss_pred             CCCcccCC
Confidence            99988754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.88  E-value=8.7e-09  Score=85.26  Aligned_cols=37  Identities=32%  Similarity=0.467  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++||+|||||++|+++|..|++.|++|+|||+++.+
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3589999999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.88  E-value=7.7e-09  Score=84.90  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEec
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR-LGIKALVLEK   36 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~   36 (232)
                      .++||+|||||++|+++|+.|++ .|++|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999993

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.85  E-value=3.2e-09  Score=86.36  Aligned_cols=39  Identities=28%  Similarity=0.402  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT   43 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~   43 (232)
                      ++||+|||||++||++|..|+++|++|+|+|+++.++..
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            489999999999999999999999999999999887543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.82  E-value=4.5e-09  Score=84.64  Aligned_cols=41  Identities=37%  Similarity=0.563  Sum_probs=36.0

Q ss_pred             CC-cccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCc
Q 044609            1 ME-MVEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLR   41 (232)
Q Consensus         1 m~-~~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~   41 (232)
                      |+ ++++||+|||||++|+++|+.|+++| ++|+|+|+.+.++
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            54 35689999999999999999999999 9999999988764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.81  E-value=2.7e-08  Score=80.76  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|++|+.+|..|++.|.+|+++|+.+.+....               +                        
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------~------------------------  189 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY---------------L------------------------  189 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT---------------C------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc---------------C------------------------
Confidence            4789999999999999999999999999999976431100               0                        


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                    ..    -....+.+.+.+  .+++++++++|+++..+   +.. ..+.+ ++.++.||.||.|+|.
T Consensus       190 --------------~~----~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~---~~v-~~v~~-~~~~i~~d~vi~a~G~  244 (447)
T 1nhp_A          190 --------------DK----EFTDVLTEEMEA--NNITIATGETVERYEGD---GRV-QKVVT-DKNAYDADLVVVAVGV  244 (447)
T ss_dssp             --------------CH----HHHHHHHHHHHT--TTEEEEESCCEEEEECS---SBC-CEEEE-SSCEEECSEEEECSCE
T ss_pred             --------------CH----HHHHHHHHHHHh--CCCEEEcCCEEEEEEcc---CcE-EEEEE-CCCEEECCEEEECcCC
Confidence                          00    001223333433  28999999999999764   232 34555 5568999999999998


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      .+.
T Consensus       245 ~p~  247 (447)
T 1nhp_A          245 RPN  247 (447)
T ss_dssp             EES
T ss_pred             CCC
Confidence            764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.81  E-value=5.3e-08  Score=79.36  Aligned_cols=99  Identities=22%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||.+|+-+|..|++.|.+|+++|+.+.+-..                  +...                    
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~--------------------  208 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ------------------FDPL--------------------  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc------------------cCHH--------------------
Confidence            58999999999999999999999999999987643100                  0000                    


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-EEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-IIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-~~~a~~vV~A~G~  164 (232)
                                          ....+.+.|.+.  +++++.+++|+++..++   +. +.|.+.+|+ ++.+|.||.|+|.
T Consensus       209 --------------------~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~G~~~i~~D~vv~a~G~  262 (463)
T 2r9z_A          209 --------------------LSATLAENMHAQ--GIETHLEFAVAALERDA---QG-TTLVAQDGTRLEGFDSVIWAVGR  262 (463)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEESSCCEEEEEEET---TE-EEEEETTCCEEEEESEEEECSCE
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---Ce-EEEEEeCCcEEEEcCEEEECCCC
Confidence                                012234444443  89999999999998753   33 678888998 8999999999998


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      .+..
T Consensus       263 ~p~~  266 (463)
T 2r9z_A          263 APNT  266 (463)
T ss_dssp             EESC
T ss_pred             CcCC
Confidence            7654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.81  E-value=1.1e-08  Score=84.31  Aligned_cols=61  Identities=30%  Similarity=0.448  Sum_probs=47.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCccee-------e-----e---ecccHHHHHHHcCChHH
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA-------L-----T---LSPNAWLALDALGVSHK   65 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~-------~-----~---~~~~~~~~l~~~g~~~~   65 (232)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.++.....       +     .   ..+...+.++++|+...
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            479999999999999999999999999999999876432111       0     1   12456788899988654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.79  E-value=5.4e-09  Score=83.61  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~   40 (232)
                      ++||+|||||++|+++|+.|+++ |++|+|+|+++.+
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            58999999999999999999998 9999999998765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.79  E-value=2.8e-08  Score=82.22  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|||+||||||+|+++|..+++.|.+|+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            48999999999999999999999999999998654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.77  E-value=9.9e-08  Score=78.11  Aligned_cols=101  Identities=21%  Similarity=0.298  Sum_probs=75.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+-..                  +..                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~---------------------  226 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK------------------FDE---------------------  226 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-cEEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-TIIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-~~~~a~~vV~A~G~  164 (232)
                                         -....+.+.|.+.  +++++++++|++++.+++ +.. +.|.+.+| +++.||.||.|+|.
T Consensus       227 -------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          227 -------------------CIQNTITDHYVKE--GINVHKLSKIVKVEKNVE-TDK-LKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             -------------------HHHHHHHHHHHHH--TCEEECSCCEEEEEECC--CCC-EEEEETTSCEEEEESEEEECSCE
T ss_pred             -------------------HHHHHHHHHHHhC--CeEEEeCCEEEEEEEcCC-CcE-EEEEECCCcEEEEcCEEEECCCC
Confidence                               0012334445443  899999999999987542 323 67788898 78999999999998


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      .++.
T Consensus       284 ~p~~  287 (479)
T 2hqm_A          284 KSHL  287 (479)
T ss_dssp             EECC
T ss_pred             CCcc
Confidence            7654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.77  E-value=1.3e-07  Score=76.04  Aligned_cols=101  Identities=19%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-...                                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV----------------------------------------  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence            3579999999999999999999999999999876541100                                        


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                .   .    .--...+.+.+.+.  |++++++++|+++..++  +.. ..|.+.+|+++.||.||.|.|.
T Consensus       192 ----------~---~----~~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~v-~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          192 ----------A---G----EALSEFYQAEHRAH--GVDLRTGAAMDCIEGDG--TKV-TGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             ----------S---C----HHHHHHHHHHHHHT--TCEEEETCCEEEEEESS--SBE-EEEEESSSCEEECSEEEECSCC
T ss_pred             ----------c---C----HHHHHHHHHHHHhC--CCEEEECCEEEEEEecC--CcE-EEEEeCCCCEEEcCEEEECCCC
Confidence                      0   0    00012223333332  89999999999998764  343 5788999999999999999998


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      .+.
T Consensus       250 ~p~  252 (415)
T 3lxd_A          250 VPC  252 (415)
T ss_dssp             EES
T ss_pred             ccC
Confidence            764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.75  E-value=4.1e-08  Score=86.68  Aligned_cols=37  Identities=35%  Similarity=0.583  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ++||+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4899999999999999999999999999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.75  E-value=5.9e-09  Score=85.63  Aligned_cols=38  Identities=32%  Similarity=0.522  Sum_probs=34.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+..+|||+|||||++|+++|..|++.|++|+|||+++
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            44446999999999999999999999999999999975

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.75  E-value=4.6e-08  Score=79.15  Aligned_cols=111  Identities=15%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ++|+|||||++|+++|..|++.|  .+|+|||+++.......+       +.         .+.....           .
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-------l~---------~~~~~~~-----------~   53 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-------LP---------YVIGEVV-----------E   53 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGG-------HH---------HHHTTSS-----------C
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcch-------hH---------HHHcCCc-----------c
Confidence            37999999999999999999987  579999998654221110       00         0000000           0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---CcEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---STIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g~~~~a~~vV~  160 (232)
                          .          ...........+   +.+.  +++++.+++|+++..+.   .. +.+....   +.++.+|.||+
T Consensus        54 ----~----------~~~~~~~~~~~~---~~~~--~i~~~~~~~V~~id~~~---~~-~~~~~~~~~~~~~~~yd~lVI  110 (437)
T 4eqs_A           54 ----D----------RRYALAYTPEKF---YDRK--QITVKTYHEVIAINDER---QT-VSVLNRKTNEQFEESYDKLIL  110 (437)
T ss_dssp             ----C----------GGGTBCCCHHHH---HHHH--CCEEEETEEEEEEETTT---TE-EEEEETTTTEEEEEECSEEEE
T ss_pred             ----c----------hhhhhhcCHHHH---HHhc--CCEEEeCCeEEEEEccC---cE-EEEEeccCCceEEEEcCEEEE
Confidence                0          000001112222   2222  78899999999997653   33 4444332   23688999999


Q ss_pred             cCCCch
Q 044609          161 CDGVHS  166 (232)
Q Consensus       161 A~G~~S  166 (232)
                      |+|...
T Consensus       111 ATGs~p  116 (437)
T 4eqs_A          111 SPGASA  116 (437)
T ss_dssp             CCCEEE
T ss_pred             CCCCcc
Confidence            999764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.75  E-value=1.3e-07  Score=77.85  Aligned_cols=100  Identities=17%  Similarity=0.285  Sum_probs=75.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                  +..                     
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~---------------------  217 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------FDE---------------------  217 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc------------------cch---------------------
Confidence            57999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcE-EEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI-IKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~-~~a~~vV~A~G~  164 (232)
                                         -....+.+.|.+.  +++++.+++|+++..++  +.. +.|.+.+|++ +.+|.||.|.|.
T Consensus       218 -------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~~~~D~vi~a~G~  273 (500)
T 1onf_A          218 -------------------SVINVLENDMKKN--NINIVTFADVVEIKKVS--DKN-LSIHLSDGRIYEHFDHVIYCVGR  273 (500)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEECSCCEEEEEESS--TTC-EEEEETTSCEEEEESEEEECCCB
T ss_pred             -------------------hhHHHHHHHHHhC--CCEEEECCEEEEEEEcC--Cce-EEEEECCCcEEEECCEEEECCCC
Confidence                               0112334445443  89999999999998754  233 6778889987 999999999998


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      ....
T Consensus       274 ~p~~  277 (500)
T 1onf_A          274 SPDT  277 (500)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            7654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.74  E-value=4.1e-08  Score=78.79  Aligned_cols=99  Identities=21%  Similarity=0.361  Sum_probs=74.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-..            .   +                         
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~------------~---~-------------------------  183 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR------------V---L-------------------------  183 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH------------H---H-------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh------------h---c-------------------------
Confidence            58999999999999999999999999999987654100            0   0                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    --...+.+.+.+.  +++++++++|.++..+   +.. ..|.+.+|+++.||.||.|+|..
T Consensus       184 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~---~~~-~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          184 -------------GR----RIGAWLRGLLTEL--GVQVELGTGVVGFSGE---GQL-EQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             -------------CH----HHHHHHHHHHHHH--TCEEECSCCEEEEECS---SSC-CEEEETTSCEEECSEEEECSCEE
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEecc---CcE-EEEEECCCCEEEcCEEEEeeCCe
Confidence                         00    0012233344443  8999999999999865   343 67889999999999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      +.
T Consensus       241 p~  242 (410)
T 3ef6_A          241 PA  242 (410)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.74  E-value=1.1e-07  Score=76.20  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----------------------------------------  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV-----------------------------------------  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc-----------------------------------------
Confidence            579999999999999999999999999999876431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                               .   ..    -....+.+.+.+.  +++++++++|+++..++  +.. ..|.+.+|+++.||.||.|+|..
T Consensus       182 ---------~---~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~v-~~V~~~dG~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          182 ---------V---TP----EISSYFHDRHSGA--GIRMHYGVRATEIAAEG--DRV-TGVVLSDGNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             ---------S---CH----HHHHHHHHHHHHT--TCEEECSCCEEEEEEET--TEE-EEEEETTSCEEECSEEEECCCEE
T ss_pred             ---------c---CH----HHHHHHHHHHHhC--CcEEEECCEEEEEEecC--CcE-EEEEeCCCCEEEcCEEEECcCCc
Confidence                     0   00    0012233333332  89999999999998764  343 67889999999999999999986


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      +.
T Consensus       241 p~  242 (404)
T 3fg2_P          241 PN  242 (404)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=7.8e-08  Score=78.21  Aligned_cols=100  Identities=14%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|++|+-+|..|++.|.+|+++|+.+.+...                  .                      
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  209 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------F----------------------  209 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------c----------------------
Confidence            368999999999999999999999999999987644100                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCcEEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DSTIIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~~~~a~~vV~A  161 (232)
                                    ..    -....+.+.|.+.  +++++.+++|+++..++   .. +.+.+.   +++++.+|.||.|
T Consensus       210 --------------~~----~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~~~~D~vv~a  265 (455)
T 1ebd_A          210 --------------EK----QMAAIIKKRLKKK--GVEVVTNALAKGAEERE---DG-VTVTYEANGETKTIDADYVLVT  265 (455)
T ss_dssp             --------------CH----HHHHHHHHHHHHT--TCEEEESEEEEEEEEET---TE-EEEEEEETTEEEEEEESEEEEC
T ss_pred             --------------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---Ce-EEEEEEeCCceeEEEcCEEEEC
Confidence                          00    0122334444443  89999999999998753   33 555543   4568999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|..+..
T Consensus       266 ~G~~p~~  272 (455)
T 1ebd_A          266 VGRRPNT  272 (455)
T ss_dssp             SCEEESC
T ss_pred             cCCCccc
Confidence            9987653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.74  E-value=1.3e-08  Score=80.99  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            4589999999999999999999999999999998765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.73  E-value=6.2e-08  Score=79.30  Aligned_cols=101  Identities=22%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...-                  .                      
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~----------------------  223 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM------------------D----------------------  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS------------------C----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc------------------C----------------------
Confidence            589999999999999999999999999999976542110                  0                      


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-----CCcEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-----DSTIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-----~g~~~~a~~vV~  160 (232)
                                        .-....+.+.|.+.  +++++++++|+++..+++ +.. +.+.+.     +++++.+|.||.
T Consensus       224 ------------------~~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~~~~g~~~~~~~D~vv~  281 (478)
T 1v59_A          224 ------------------GEVAKATQKFLKKQ--GLDFKLSTKVISAKRNDD-KNV-VEIVVEDTKTNKQENLEAEVLLV  281 (478)
T ss_dssp             ------------------HHHHHHHHHHHHHT--TCEEECSEEEEEEEEETT-TTE-EEEEEEETTTTEEEEEEESEEEE
T ss_pred             ------------------HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEecC-CCe-EEEEEEEcCCCCceEEECCEEEE
Confidence                              00112333444433  899999999999986211 343 555554     346899999999


Q ss_pred             cCCCchhh
Q 044609          161 CDGVHSMV  168 (232)
Q Consensus       161 A~G~~S~~  168 (232)
                      |+|..+..
T Consensus       282 a~G~~p~~  289 (478)
T 1v59_A          282 AVGRRPYI  289 (478)
T ss_dssp             CSCEEECC
T ss_pred             CCCCCcCC
Confidence            99987654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.72  E-value=1.6e-08  Score=79.73  Aligned_cols=37  Identities=35%  Similarity=0.591  Sum_probs=34.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS-DGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~-~~~   40 (232)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+. +.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4579999999999999999999999999999998 654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.72  E-value=1.4e-07  Score=77.44  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=75.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .+++|||+|..|+-+|..|++.   |.+|+++|+.+.+-..                  +                    
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~--------------------  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------F--------------------  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------S--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc------------------c--------------------
Confidence            5899999999999999999998   9999999987643110                  0                    


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                                      ..    -....+.+.|.+.  +++++++++|+++..++  +.. +.|.+.+|+++.||.||.|+
T Consensus       230 ----------------d~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~~-~~v~~~~G~~i~~D~vv~a~  284 (490)
T 1fec_A          230 ----------------DS----ELRKQLTEQLRAN--GINVRTHENPAKVTKNA--DGT-RHVVFESGAEADYDVVMLAI  284 (490)
T ss_dssp             ----------------CH----HHHHHHHHHHHHT--TEEEEETCCEEEEEECT--TSC-EEEEETTSCEEEESEEEECS
T ss_pred             ----------------CH----HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcC--CCE-EEEEECCCcEEEcCEEEEcc
Confidence                            00    0012334444443  89999999999998764  233 67888899889999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |..+..
T Consensus       285 G~~p~~  290 (490)
T 1fec_A          285 GRVPRS  290 (490)
T ss_dssp             CEEESC
T ss_pred             CCCcCc
Confidence            987654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.72  E-value=1.5e-07  Score=77.31  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL---GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~---g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      .+|+|||+|..|+-+|..|++.   |.+|+++|+.+.+-..                  +..                  
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~------------------~d~------------------  235 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG------------------FDE------------------  235 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT------------------SCH------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc------------------cCH------------------
Confidence            5899999999999999999998   9999999987643110                  000                  


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                                            -....+.+.|.+.  +++++++++|+++..++  +.. +.|.+.+|+++.||.||.|+
T Consensus       236 ----------------------~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~~-~~v~~~~G~~i~~D~vv~a~  288 (495)
T 2wpf_A          236 ----------------------TIREEVTKQLTAN--GIEIMTNENPAKVSLNT--DGS-KHVTFESGKTLDVDVVMMAI  288 (495)
T ss_dssp             ----------------------HHHHHHHHHHHHT--TCEEEESCCEEEEEECT--TSC-EEEEETTSCEEEESEEEECS
T ss_pred             ----------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcC--Cce-EEEEECCCcEEEcCEEEECC
Confidence                                  0012334444443  89999999999998754  233 67888899899999999999


Q ss_pred             CCchhh
Q 044609          163 GVHSMV  168 (232)
Q Consensus       163 G~~S~~  168 (232)
                      |.....
T Consensus       289 G~~p~~  294 (495)
T 2wpf_A          289 GRIPRT  294 (495)
T ss_dssp             CEEECC
T ss_pred             CCcccc
Confidence            987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.71  E-value=1.2e-07  Score=76.68  Aligned_cols=100  Identities=14%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-...                                         
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~-----------------------------------------  188 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------------------------------  188 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch-----------------------------------------
Confidence            589999999999999999999999999999865431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEe--cCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDS--QTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~--~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                               .   ..    --...+.+.+.+.  |++++++++|+++..  ++  +.. ..|.+.+|+++.||.||.|+|
T Consensus       189 ---------~---~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~--~~v-~~v~~~~G~~i~~D~Vv~a~G  247 (431)
T 1q1r_A          189 ---------T---AP----PVSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQ--QKV-TAVLCEDGTRLPADLVIAGIG  247 (431)
T ss_dssp             ---------S---CH----HHHHHHHHHHHHH--TCEEECSCCEEEEEECTTT--CCE-EEEEETTSCEEECSEEEECCC
T ss_pred             ---------h---hH----HHHHHHHHHHHhC--CeEEEeCCEEEEEEeccCC--CcE-EEEEeCCCCEEEcCEEEECCC
Confidence                     0   00    0012233444433  899999999999986  32  343 478888999999999999999


Q ss_pred             Cchh
Q 044609          164 VHSM  167 (232)
Q Consensus       164 ~~S~  167 (232)
                      ..+.
T Consensus       248 ~~p~  251 (431)
T 1q1r_A          248 LIPN  251 (431)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            7653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.69  E-value=8e-08  Score=79.02  Aligned_cols=34  Identities=12%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +++|+|||||++|+++|..|++.+++|+|||+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            4689999999999999999999999999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.68  E-value=2.4e-07  Score=76.18  Aligned_cols=99  Identities=14%  Similarity=0.252  Sum_probs=74.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+-..     +                                    
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~------------------------------------  221 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----E------------------------------------  221 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----S------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----c------------------------------------
Confidence            58999999999999999999999999999987643110     0                                    


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  |++++.+++|+++..++   .. +.+.+.+|+++.||.||.|.|..
T Consensus       222 -------------d~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          222 -------------DA----DAALVLEESFAER--GVRLFKNARAASVTRTG---AG-VLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             -------------SH----HHHHHHHHHHHHT--TCEEETTCCEEEEEECS---SS-EEEEETTSCEEEESEEEECCCEE
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEECCCcEEEcCEEEECCCCC
Confidence                         00    0112234444433  89999999999998753   33 67778888899999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      ++.
T Consensus       279 p~~  281 (499)
T 1xdi_A          279 PNT  281 (499)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            753

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.67  E-value=2.6e-08  Score=81.59  Aligned_cols=38  Identities=39%  Similarity=0.514  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~~~   41 (232)
                      +.+||+|||||++|+++|+.|+++| .+|+|+|+.+.++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            4589999999999999999999998 7999999998663

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.67  E-value=2.9e-08  Score=78.95  Aligned_cols=37  Identities=22%  Similarity=0.502  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ++||+|||||++|+++|..|+++|++|+|+|+++.++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999999999999999999999999999987653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.67  E-value=1.9e-08  Score=82.39  Aligned_cols=35  Identities=37%  Similarity=0.556  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +++||+|||||++|+++|..|++.|++|+|||++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            46899999999999999999999999999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.65  E-value=1.2e-07  Score=77.61  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+-..                  +..                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~---------------------  226 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------ADR---------------------  226 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC----CcEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD----STIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~----g~~~~a~~vV~A  161 (232)
                                         -....+.+.|.+.  +++++++++|.++..++   .. +.+.+.+    |+++.+|.||.|
T Consensus       227 -------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~g~~~~~D~vv~a  281 (482)
T 1ojt_A          227 -------------------DLVKVWQKQNEYR--FDNIMVNTKTVAVEPKE---DG-VYVTFEGANAPKEPQRYDAVLVA  281 (482)
T ss_dssp             -------------------HHHHHHHHHHGGG--EEEEECSCEEEEEEEET---TE-EEEEEESSSCCSSCEEESCEEEC
T ss_pred             -------------------HHHHHHHHHHHhc--CCEEEECCEEEEEEEcC---Ce-EEEEEeccCCCceEEEcCEEEEC
Confidence                               0012334444443  78999999999998753   33 5566665    677999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|..++.
T Consensus       282 ~G~~p~~  288 (482)
T 1ojt_A          282 AGRAPNG  288 (482)
T ss_dssp             CCEEECG
T ss_pred             cCCCcCC
Confidence            9987654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.64  E-value=2.6e-08  Score=81.26  Aligned_cols=38  Identities=32%  Similarity=0.605  Sum_probs=33.1

Q ss_pred             CCcc-cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMV-EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~-~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.+| ++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4444 5999999999999999999999999999999976

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.63  E-value=4.2e-07  Score=74.31  Aligned_cols=100  Identities=20%  Similarity=0.369  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  217 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------------------------------  217 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------------------------------
Confidence            589999999999999999999999999999876542100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEE-----eCCCcEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIIN-----LGDSTIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~-----~~~g~~~~a~~vV~  160 (232)
                           +       ..    -....+.+.|.+.  +++++++++|+++..++  +.. +.+.     ..+++++.+|.||.
T Consensus       218 -----~-------~~----~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~--~~~-~~v~~~~~~~~~~~~i~~D~vv~  276 (474)
T 1zmd_A          218 -----I-------DM----EISKNFQRILQKQ--GFKFKLNTKVTGATKKS--DGK-IDVSIEAASGGKAEVITCDVLLV  276 (474)
T ss_dssp             -----C-------CH----HHHHHHHHHHHHT--TCEEECSEEEEEEEECT--TSC-EEEEEEETTSCCCEEEEESEEEE
T ss_pred             -----c-------CH----HHHHHHHHHHHHC--CCEEEeCceEEEEEEcC--Cce-EEEEEEecCCCCceEEEcCEEEE
Confidence                 0       00    0012334444433  89999999999998764  232 4444     24567899999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|..+.
T Consensus       277 a~G~~p~  283 (474)
T 1zmd_A          277 CIGRRPF  283 (474)
T ss_dssp             CSCEEEC
T ss_pred             CcCCCcC
Confidence            9998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.63  E-value=3.8e-07  Score=76.20  Aligned_cols=100  Identities=22%  Similarity=0.390  Sum_probs=73.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.....                  ...                     
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  192 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP------------------VDR---------------------  192 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT------------------SCH---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh------------------cCH---------------------
Confidence            48999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecC-----------------CCCCccEEEEeC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQT-----------------LNGSSAAIINLG  148 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~-----------------~~g~~~~~v~~~  148 (232)
                                         -....+.+.|.+.  +++++++++|.++..+.                 + +.. +.+.+.
T Consensus       193 -------------------~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~  249 (565)
T 3ntd_A          193 -------------------EMAGFAHQAIRDQ--GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI-KGH-LSLTLS  249 (565)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCT-TCE-EEEEET
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCeEEEEeccccccccccccccccccccC-CCc-EEEEEc
Confidence                               0022233444433  88999999999997630                 1 233 667788


Q ss_pred             CCcEEEccEEEecCCCchh
Q 044609          149 DSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       149 ~g~~~~a~~vV~A~G~~S~  167 (232)
                      +|+++.||.||.|+|..+.
T Consensus       250 ~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          250 NGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             TSCEEEESEEEECSCEEEC
T ss_pred             CCCEEEcCEEEECcCCccc
Confidence            8989999999999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.62  E-value=3.2e-07  Score=75.91  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=74.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...                  +                       
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~-----------------------  253 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------K-----------------------  253 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------C-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------c-----------------------
Confidence            68999999999999999999999999999987643100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc-EEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST-IIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~-~~~a~~vV~A~G  163 (232)
                                   ..    -....+.+.|.+.  |++++++++|+++..+++ +.. .+.|.+.+|+ ++.||.||.|+|
T Consensus       254 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          254 -------------DN----ETRAYVLDRMKEQ--GMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             -------------SH----HHHHHHHHHHHHT--TCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -------------cH----HHHHHHHHHHHhC--CcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEECcC
Confidence                         00    0022334444443  899999999999987532 210 0457778887 899999999999


Q ss_pred             Cchhh
Q 044609          164 VHSMV  168 (232)
Q Consensus       164 ~~S~~  168 (232)
                      ..+..
T Consensus       314 ~~p~~  318 (523)
T 1mo9_A          314 EQPRS  318 (523)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            98754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.62  E-value=2.6e-07  Score=75.51  Aligned_cols=106  Identities=26%  Similarity=0.396  Sum_probs=76.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .+|+|||+|..|+-+|..|++. |.+|+++++.+.+....                                        
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~----------------------------------------  199 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF----------------------------------------  199 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc----------------------------------------
Confidence            5899999999999999999999 99999999875431100                                        


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                .   .+    -....+.+.+.+.  +++++.+++|++++.++  +.  +.+.+.+|+++.||.||.|+|.
T Consensus       200 ----------~---~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~--v~v~~~~g~~i~aD~Vv~a~G~  256 (472)
T 3iwa_A          200 ----------T---SK----SLSQMLRHDLEKN--DVVVHTGEKVVRLEGEN--GK--VARVITDKRTLDADLVILAAGV  256 (472)
T ss_dssp             ----------S---CH----HHHHHHHHHHHHT--TCEEECSCCEEEEEESS--SB--EEEEEESSCEEECSEEEECSCE
T ss_pred             ----------c---CH----HHHHHHHHHHHhc--CCEEEeCCEEEEEEccC--Ce--EEEEEeCCCEEEcCEEEECCCC
Confidence                      0   00    0122333444432  89999999999998753  33  6677888989999999999998


Q ss_pred             chh--hhhhhcC
Q 044609          165 HSM--VAQWLGL  174 (232)
Q Consensus       165 ~S~--~r~~~~~  174 (232)
                      .+.  +.+.+++
T Consensus       257 ~p~~~l~~~~gl  268 (472)
T 3iwa_A          257 SPNTQLARDAGL  268 (472)
T ss_dssp             EECCHHHHHHTC
T ss_pred             CcCHHHHHhCCc
Confidence            753  3344443

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.62  E-value=5.3e-08  Score=78.68  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=35.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      .++||+|||+|++|+++|..|+++|++|+++|+++.++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccc
Confidence            458999999999999999999999999999999877643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.62  E-value=7.3e-08  Score=79.24  Aligned_cols=38  Identities=42%  Similarity=0.587  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.++.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            57999999999999999999999999999999887643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.61  E-value=3.7e-08  Score=77.89  Aligned_cols=36  Identities=36%  Similarity=0.607  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +||+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999987653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.61  E-value=4.3e-07  Score=74.12  Aligned_cols=99  Identities=21%  Similarity=0.322  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...                  +                       
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  213 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT------------------L-----------------------  213 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc------------------C-----------------------
Confidence            58999999999999999999999999999987643110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHH-hhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC--CC--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEAL-ADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DS--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g--~~~~a~~vV~  160 (232)
                                   ..    -....+.+.| .+.  +++++.+++|++++.++   .. +.+.+.  +|  +++.||.||.
T Consensus       214 -------------d~----~~~~~l~~~l~~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vv~  270 (468)
T 2qae_A          214 -------------DE----DVTNALVGALAKNE--KMKFMTSTKVVGGTNNG---DS-VSLEVEGKNGKRETVTCEALLV  270 (468)
T ss_dssp             -------------CH----HHHHHHHHHHHHHT--CCEEECSCEEEEEEECS---SS-EEEEEECC---EEEEEESEEEE
T ss_pred             -------------CH----HHHHHHHHHHhhcC--CcEEEeCCEEEEEEEcC---Ce-EEEEEEcCCCceEEEECCEEEE
Confidence                         00    0122334444 332  89999999999998763   23 555554  66  5799999999


Q ss_pred             cCCCchhh
Q 044609          161 CDGVHSMV  168 (232)
Q Consensus       161 A~G~~S~~  168 (232)
                      |+|..++.
T Consensus       271 a~G~~p~~  278 (468)
T 2qae_A          271 SVGRRPFT  278 (468)
T ss_dssp             CSCEEECC
T ss_pred             CCCcccCC
Confidence            99987653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.61  E-value=3.7e-07  Score=74.39  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+-..                  +                       
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  210 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN------------------E-----------------------  210 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------c-----------------------
Confidence            58999999999999999999999999999987643110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC-CC--cEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG-DS--TIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~-~g--~~~~a~~vV~A~  162 (232)
                                   ..    -....+.+.|.+.  +++++++++|+++..++   .. +.+.+. +|  +++.+|.||.|+
T Consensus       211 -------------~~----~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~~~~D~vv~a~  267 (464)
T 2a8x_A          211 -------------DA----DVSKEIEKQFKKL--GVTILTATKVESIADGG---SQ-VTVTVTKDGVAQELKAEKVLQAI  267 (464)
T ss_dssp             -------------CH----HHHHHHHHHHHHH--TCEEECSCEEEEEEECS---SC-EEEEEESSSCEEEEEESEEEECS
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEeCcEEEEEEEcC---Ce-EEEEEEcCCceEEEEcCEEEECC
Confidence                         00    0012234444443  89999999999998753   23 555554 56  579999999999


Q ss_pred             CCchh
Q 044609          163 GVHSM  167 (232)
Q Consensus       163 G~~S~  167 (232)
                      |...+
T Consensus       268 G~~p~  272 (464)
T 2a8x_A          268 GFAPN  272 (464)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            98764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.61  E-value=3.9e-08  Score=80.15  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+ +++||+|||||++|+++|..|++.|++|+|||++.
T Consensus         1 M~-~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            1 MT-QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             -C-CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CC-ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            54 46899999999999999999999999999999973

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.61  E-value=3.5e-08  Score=80.18  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +++||+|||||++|+++|..|++.|++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46899999999999999999999999999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=4.4e-08  Score=80.60  Aligned_cols=34  Identities=35%  Similarity=0.508  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ++||+|||||++|+++|..|++.|++|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999999999999984

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.58  E-value=4.5e-08  Score=80.16  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .++||+|||||++|+++|..|++.|++|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            35899999999999999999999999999999974

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.58  E-value=4.6e-07  Score=73.59  Aligned_cols=99  Identities=19%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-...                 +                       
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~-----------------------  189 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY-----------------F-----------------------  189 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT-----------------S-----------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh-----------------h-----------------------
Confidence            589999999999999999999999999999876431100                 0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  +++++++++|+++..++  +.. ..+.+ +|+++.||.||.|+|..
T Consensus       190 -------------~~----~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~--~~v-~~v~~-~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          190 -------------DK----EFTDILAKDYEAH--GVNLVLGSKVAAFEEVD--DEI-ITKTL-DGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             -------------CH----HHHHHHHHHHHHT--TCEEEESSCEEEEEEET--TEE-EEEET-TSCEEEESEEEECCCEE
T ss_pred             -------------hh----hHHHHHHHHHHHC--CCEEEcCCeeEEEEcCC--CeE-EEEEe-CCCEEECCEEEECcCCC
Confidence                         00    0112333444443  89999999999998643  332 33444 78889999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       247 p~  248 (452)
T 2cdu_A          247 PN  248 (452)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.57  E-value=2.2e-07  Score=75.62  Aligned_cols=97  Identities=19%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+...                  ...                     
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~---------------------  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------YDS---------------------  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------SCH---------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999997643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G  163 (232)
                                         -....+.+.|.+.  +++++.+++|+++.. +  +   +.+...+|  +++.+|.||.|+|
T Consensus       213 -------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~-~--~---v~v~~~~G~~~~i~~D~vv~a~G  265 (458)
T 1lvl_A          213 -------------------ELTAPVAESLKKL--GIALHLGHSVEGYEN-G--C---LLANDGKGGQLRLEADRVLVAVG  265 (458)
T ss_dssp             -------------------HHHHHHHHHHHHH--TCEEETTCEEEEEET-T--E---EEEECSSSCCCEECCSCEEECCC
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEe-C--C---EEEEECCCceEEEECCEEEECcC
Confidence                               0012234444443  899999999999975 3  2   44554456  5899999999999


Q ss_pred             Cchhh
Q 044609          164 VHSMV  168 (232)
Q Consensus       164 ~~S~~  168 (232)
                      ..++.
T Consensus       266 ~~p~~  270 (458)
T 1lvl_A          266 RRPRT  270 (458)
T ss_dssp             EEECC
T ss_pred             CCcCC
Confidence            87653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.57  E-value=7e-07  Score=71.58  Aligned_cols=95  Identities=21%  Similarity=0.334  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  184 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------------------------------  184 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc-----------------------------------------
Confidence            689999999999999999999999999999876431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                               .   +.    -....+.+.|.+.  +++++.+++|+++. +   +    .|.+.+|+++.||.||.|+|..
T Consensus       185 ---------~---~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~-~---~----~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          185 ---------A---PA----TLADFVARYHAAQ--GVDLRFERSVTGSV-D---G----VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             ---------S---CH----HHHHHHHHHHHHT--TCEEEESCCEEEEE-T---T----EEEETTSCEEECSEEEECSCEE
T ss_pred             ---------c---CH----HHHHHHHHHHHHc--CcEEEeCCEEEEEE-C---C----EEEECCCCEEEcCEEEECcCCC
Confidence                     0   00    0112334444433  89999999999997 3   3    2456788899999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       239 p~  240 (408)
T 2gqw_A          239 AN  240 (408)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.56  E-value=3.2e-07  Score=74.91  Aligned_cols=100  Identities=22%  Similarity=0.397  Sum_probs=72.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                  .                      
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------~----------------------  216 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------M----------------------  216 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------c----------------------
Confidence            358999999999999999999999999999987644110                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLI  159 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV  159 (232)
                                    ..    -....+.+.|.+.  +++++.+++|.++..++   .. +.+.+.   +|  +++.+|.||
T Consensus       217 --------------~~----~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~~~~D~vv  272 (470)
T 1dxl_A          217 --------------DA----EIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSG---DG-VKLTVEPSAGGEQTIIEADVVL  272 (470)
T ss_dssp             --------------CH----HHHHHHHHHHHHS--SCCEECSEEEEEEECSS---SS-EEEEEEESSSCCCEEEEESEEE
T ss_pred             --------------cH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEEcC---Ce-EEEEEEecCCCcceEEECCEEE
Confidence                          00    0022234444443  89999999999998653   23 455543   44  579999999


Q ss_pred             ecCCCchhh
Q 044609          160 GCDGVHSMV  168 (232)
Q Consensus       160 ~A~G~~S~~  168 (232)
                      .|+|..++.
T Consensus       273 ~a~G~~p~~  281 (470)
T 1dxl_A          273 VSAGRTPFT  281 (470)
T ss_dssp             CCCCEEECC
T ss_pred             ECCCCCcCC
Confidence            999987653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.55  E-value=8.9e-07  Score=72.68  Aligned_cols=99  Identities=17%  Similarity=0.252  Sum_probs=71.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-...                 +                      
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~----------------------  234 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------Y----------------------  234 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------S----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------H----------------------
Confidence            3689999999999999999999999999999876431100                 0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                    ..    -....+.+.|.+.  +++++.+++|+++..+   +.. ..+.+ +|+++.||.||.|+|.
T Consensus       235 --------------~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~---~~v-~~v~~-~g~~i~~D~Vi~a~G~  289 (490)
T 2bc0_A          235 --------------DR----DLTDLMAKNMEEH--GIQLAFGETVKEVAGN---GKV-EKIIT-DKNEYDVDMVILAVGF  289 (490)
T ss_dssp             --------------CH----HHHHHHHHHHHTT--TCEEEETCCEEEEECS---SSC-CEEEE-SSCEEECSEEEECCCE
T ss_pred             --------------HH----HHHHHHHHHHHhC--CeEEEeCCEEEEEEcC---CcE-EEEEE-CCcEEECCEEEECCCC
Confidence                          00    0112334444433  8999999999999863   332 33555 6778999999999998


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      ...
T Consensus       290 ~p~  292 (490)
T 2bc0_A          290 RPN  292 (490)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.55  E-value=7.6e-07  Score=72.34  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  186 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY-----------------------------------------  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc-----------------------------------------
Confidence            579999999999999999999999999999876431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                           +       ..    --...+.+.|.+.  +++++.+++|++++..+   .. +.|.+.++ ++.||.||.|+|..
T Consensus       187 -----~-------d~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~~-v~v~~~~g-~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          187 -----F-------DK----EMVAEVQKSLEKQ--AVIFHFEETVLGIEETA---NG-IVLETSEQ-EISCDSGIFALNLH  243 (452)
T ss_dssp             -----C-------CH----HHHHHHHHHHHTT--TEEEEETCCEEEEEECS---SC-EEEEESSC-EEEESEEEECSCCB
T ss_pred             -----C-------CH----HHHHHHHHHHHHc--CCEEEeCCEEEEEEccC---Ce-EEEEECCC-EEEeCEEEECcCCC
Confidence                 0       00    0122333444432  89999999999998653   33 66777777 89999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       244 p~  245 (452)
T 3oc4_A          244 PQ  245 (452)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.55  E-value=3.8e-07  Score=74.68  Aligned_cols=98  Identities=21%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|++|+-+|..|++.|.+|+++|+.+.+...                  +                      
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  225 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI------------------Y----------------------  225 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc------------------C----------------------
Confidence            468999999999999999999999999999987533110                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                    ..    -....+.+.+.+.  +++++++++|+++..+   +.. ..+.+. +.++.||.||.|+|.
T Consensus       226 --------------~~----~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~---~~v-~~v~~~-~~~i~~D~vi~a~G~  280 (480)
T 3cgb_A          226 --------------DG----DMAEYIYKEADKH--HIEILTNENVKAFKGN---ERV-EAVETD-KGTYKADLVLVSVGV  280 (480)
T ss_dssp             --------------CH----HHHHHHHHHHHHT--TCEEECSCCEEEEEES---SBE-EEEEET-TEEEECSEEEECSCE
T ss_pred             --------------CH----HHHHHHHHHHHHc--CcEEEcCCEEEEEEcC---CcE-EEEEEC-CCEEEcCEEEECcCC
Confidence                          00    0012233444432  8999999999999764   332 445554 447999999999998


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      .+.
T Consensus       281 ~p~  283 (480)
T 3cgb_A          281 KPN  283 (480)
T ss_dssp             EES
T ss_pred             CcC
Confidence            764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.54  E-value=6.8e-07  Score=72.92  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+-..                                          
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  214 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE------------------------------------------  214 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTS------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCC------------------------------------------
Confidence            58999999999999999999999999999987643110                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .+    -....+.+.|.+.  +++++.+++|+++..++   .. +.|.+. +.++.||.||.|+|.+
T Consensus       215 -------------~~----~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~~-~~v~~~-~~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          215 -------------DP----AIGEAVTAAFRAE--GIEVLEHTQASQVAHMD---GE-FVLTTT-HGELRADKLLVATGRT  270 (467)
T ss_dssp             -------------CH----HHHHHHHHHHHHT--TCEEETTCCEEEEEEET---TE-EEEEET-TEEEEESEEEECSCEE
T ss_pred             -------------CH----HHHHHHHHHHHhC--CCEEEcCCEEEEEEEeC---CE-EEEEEC-CcEEEcCEEEECCCCC
Confidence                         00    0012334444433  89999999999998753   33 566666 4579999999999998


Q ss_pred             hhh
Q 044609          166 SMV  168 (232)
Q Consensus       166 S~~  168 (232)
                      +..
T Consensus       271 p~~  273 (467)
T 1zk7_A          271 PNT  273 (467)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.53  E-value=1e-06  Score=73.00  Aligned_cols=99  Identities=13%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+++|||||..|+-+|..+++.|.+|+|+++...+..                   ..+                    
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~-------------------~D~--------------------  263 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG-------------------FDQ--------------------  263 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT-------------------SCH--------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc-------------------cch--------------------
Confidence            36899999999999999999999999999987532210                   000                    


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                          --...+.+.|.+.  +++++.+..+.+++..+   .. +.|.+.++.++.+|.|+.|.|+
T Consensus       264 --------------------ei~~~l~~~l~~~--gi~~~~~~~v~~~~~~~---~~-~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          264 --------------------QCAVKVKLYMEEQ--GVMFKNGILPKKLTKMD---DK-ILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             --------------------HHHHHHHHHHHHT--TCEEEETCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCE
T ss_pred             --------------------hHHHHHHHHHHhh--cceeecceEEEEEEecC---Ce-EEEEEcCCCeEEEEEEEEcccc
Confidence                                0122334445443  89999999999998764   44 7788889988999999999999


Q ss_pred             chhh
Q 044609          165 HSMV  168 (232)
Q Consensus       165 ~S~~  168 (232)
                      ..++
T Consensus       318 ~Pnt  321 (542)
T 4b1b_A          318 KGDI  321 (542)
T ss_dssp             EESC
T ss_pred             cCCc
Confidence            7654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.52  E-value=1.2e-06  Score=71.86  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                  ...                     
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~---------------------  215 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------------------QDE---------------------  215 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------------------CCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------CCH---------------------
Confidence            58999999999999999999999999999987654110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC--CC--cEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DS--TIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g--~~~~a~~vV~A  161 (232)
                                         -....+.+.|.+   +++++.+++|++++.++  +.  +.+.+.  +|  .++.+|.||.|
T Consensus       216 -------------------~~~~~l~~~l~~---~V~i~~~~~v~~i~~~~--~~--v~v~~~~~~G~~~~i~~D~Vi~a  269 (492)
T 3ic9_A          216 -------------------EMKRYAEKTFNE---EFYFDAKARVISTIEKE--DA--VEVIYFDKSGQKTTESFQYVLAA  269 (492)
T ss_dssp             -------------------HHHHHHHHHHHT---TSEEETTCEEEEEEECS--SS--EEEEEECTTCCEEEEEESEEEEC
T ss_pred             -------------------HHHHHHHHHHhh---CcEEEECCEEEEEEEcC--CE--EEEEEEeCCCceEEEECCEEEEe
Confidence                               011223334433   38899999999998764  23  556653  67  58999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       270 ~G~~p~  275 (492)
T 3ic9_A          270 TGRKAN  275 (492)
T ss_dssp             SCCEES
T ss_pred             eCCccC
Confidence            998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.52  E-value=8.8e-08  Score=80.72  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||||++|+++|+.|++.|++|+|||+.+...
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            35899999999999999999999999999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.52  E-value=1.5e-06  Score=70.99  Aligned_cols=100  Identities=20%  Similarity=0.289  Sum_probs=72.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                  .                      
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~----------------------  219 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------V----------------------  219 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------c----------------------
Confidence            358999999999999999999999999999986643110                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~A  161 (232)
                                    .    .-....+.+.|.+.  +++++.+++|++++.++   .. +.+.+.++   +++.+|.||.|
T Consensus       220 --------------~----~~~~~~l~~~l~~~--Gv~v~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~~~D~vi~a  275 (476)
T 3lad_A          220 --------------D----EQVAKEAQKILTKQ--GLKILLGARVTGTEVKN---KQ-VTVKFVDAEGEKSQAFDKLIVA  275 (476)
T ss_dssp             --------------C----HHHHHHHHHHHHHT--TEEEEETCEEEEEEECS---SC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             --------------C----HHHHHHHHHHHHhC--CCEEEECCEEEEEEEcC---CE-EEEEEEeCCCcEEEECCEEEEe
Confidence                          0    00122334444433  89999999999998764   33 55665544   57999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|.....
T Consensus       276 ~G~~p~~  282 (476)
T 3lad_A          276 VGRRPVT  282 (476)
T ss_dssp             SCEEECC
T ss_pred             eCCcccC
Confidence            9987643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.52  E-value=1.2e-07  Score=74.58  Aligned_cols=34  Identities=38%  Similarity=0.574  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +||+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4999999999999999999999999999999874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.52  E-value=9.1e-07  Score=68.29  Aligned_cols=97  Identities=15%  Similarity=0.289  Sum_probs=69.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                    .                     
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------~---------------------  184 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------K---------------------  184 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------------H---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC--------------------H---------------------
Confidence            58999999999999999999999999999986533100                    0                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC----C--cEEEccEEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD----S--TIIKAKVLI  159 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~----g--~~~~a~~vV  159 (232)
                                         .....+.+.+.+  .+++++++++|+++..++  +.. ..|.+.+    |  .++.||.||
T Consensus       185 -------------------~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~g~~~~i~~D~vv  240 (320)
T 1trb_A          185 -------------------ILIKRLMDKVEN--GNIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLF  240 (320)
T ss_dssp             -------------------HHHHHHHHHHHT--SSEEEECSCEEEEEEECS--SSE-EEEEEECCTTCCCCEEEECSEEE
T ss_pred             -------------------HHHHHHHHhccc--CCeEEEcCceeEEEEcCC--Cce-EEEEEEeccCCCceEEEEcCEEE
Confidence                               001223333433  289999999999998764  232 3355443    4  479999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      .|+|....
T Consensus       241 ~a~G~~p~  248 (320)
T 1trb_A          241 VAIGHSPN  248 (320)
T ss_dssp             ECSCEEES
T ss_pred             EEeCCCCC
Confidence            99998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.51  E-value=9e-08  Score=77.74  Aligned_cols=36  Identities=42%  Similarity=0.541  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            479999999999999999999999999999998765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.49  E-value=1e-06  Score=68.44  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+....                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            5799999999999999999999999999998764311                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-----CcEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-----STIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-----g~~~~a~~vV~  160 (232)
                                           ...+.+.+.+. .+++++.+++|.++..++  +.. ..|.+.+     +.++.||.||.
T Consensus       211 ---------------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~--~~~-~~v~~~~~~~g~~~~i~~D~vi~  265 (338)
T 3itj_A          211 ---------------------STIMQKRAEKN-EKIEILYNTVALEAKGDG--KLL-NALRIKNTKKNEETDLPVSGLFY  265 (338)
T ss_dssp             ---------------------CHHHHHHHHHC-TTEEEECSEEEEEEEESS--SSE-EEEEEEETTTTEEEEEECSEEEE
T ss_pred             ---------------------CHHHHHHHHhc-CCeEEeecceeEEEEccc--CcE-EEEEEEECCCCceEEEEeCEEEE
Confidence                                 11223344332 388999999999998764  332 4455544     35799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       266 a~G~~p~  272 (338)
T 3itj_A          266 AIGHTPA  272 (338)
T ss_dssp             CSCEEEC
T ss_pred             EeCCCCC
Confidence            9998653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.49  E-value=9.5e-07  Score=72.52  Aligned_cols=99  Identities=19%  Similarity=0.320  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.....                  .                       
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  237 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG------------------M-----------------------  237 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS------------------S-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc------------------C-----------------------
Confidence            58999999999999999999999999999987643110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---C--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g--~~~~a~~vV~  160 (232)
                                   ..    -....+.+.|.+.  +++++.+++|.+++.++   .. +.+.+.+   |  +++.+|.||.
T Consensus       238 -------------d~----~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~Vi~  294 (491)
T 3urh_A          238 -------------DG----EVAKQLQRMLTKQ--GIDFKLGAKVTGAVKSG---DG-AKVTFEPVKGGEATTLDAEVVLI  294 (491)
T ss_dssp             -------------CH----HHHHHHHHHHHHT--TCEEECSEEEEEEEEET---TE-EEEEEEETTSCCCEEEEESEEEE
T ss_pred             -------------CH----HHHHHHHHHHHhC--CCEEEECCeEEEEEEeC---CE-EEEEEEecCCCceEEEEcCEEEE
Confidence                         00    0122334444433  89999999999998764   33 4454442   4  5799999999


Q ss_pred             cCCCchhh
Q 044609          161 CDGVHSMV  168 (232)
Q Consensus       161 A~G~~S~~  168 (232)
                      |+|.....
T Consensus       295 a~G~~p~~  302 (491)
T 3urh_A          295 ATGRKPST  302 (491)
T ss_dssp             CCCCEECC
T ss_pred             eeCCccCC
Confidence            99987643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.49  E-value=3.4e-07  Score=72.33  Aligned_cols=92  Identities=18%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      +.+                                  
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~~----------------------------------  183 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE----------------------------------  183 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CCH----------------------------------
Confidence            5899999999999999999999999999998764311      000                                  


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                         -....+.+.|.+.  +++++.+++|+++.  .   .   .|.+.+|+ +.+|.||.|+|..
T Consensus       184 -------------------~~~~~l~~~l~~~--gV~i~~~~~v~~i~--~---~---~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          184 -------------------ELSNMIKDMLEET--GVKFFLNSELLEAN--E---E---GVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             -------------------HHHHHHHHHHHHT--TEEEECSCCEEEEC--S---S---EEEETTEE-EECSCEEEECCEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEcCCEEEEEE--e---e---EEEECCCE-EEcCEEEECcCCC
Confidence                               0012233444443  89999999999986  2   1   24567887 9999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ++
T Consensus       234 p~  235 (367)
T 1xhc_A          234 PN  235 (367)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.48  E-value=9.3e-07  Score=74.20  Aligned_cols=96  Identities=20%  Similarity=0.387  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.....                  +                       
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  226 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP------------------I-----------------------  226 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc------------------C-----------------------
Confidence            58999999999999999999999999999987643110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   ..    -....+.+.|.+.  +++++.+++|+++..+.   .   .|.+.+|+++.||.||.|+|..
T Consensus       227 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~---~v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          227 -------------DY----EMAAYVHEHMKNH--DVELVFEDGVDALEENG---A---VVRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             -------------CH----HHHHHHHHHHHHT--TCEEECSCCEEEEEGGG---T---EEEETTSCEEECSEEEECSCEE
T ss_pred             -------------CH----HHHHHHHHHHHHc--CCEEEECCeEEEEecCC---C---EEEECCCCEEEcCEEEEccCCC
Confidence                         00    0022334444433  89999999999997653   2   2566888899999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      +.
T Consensus       282 p~  283 (588)
T 3ics_A          282 PE  283 (588)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.48  E-value=9.9e-08  Score=77.67  Aligned_cols=35  Identities=29%  Similarity=0.586  Sum_probs=32.5

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +.++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            35689999999999999999999999999999993

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.48  E-value=1.4e-06  Score=70.41  Aligned_cols=94  Identities=20%  Similarity=0.356  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+......                                         
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~-----------------------------------------  186 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM-----------------------------------------  186 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS-----------------------------------------
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc-----------------------------------------
Confidence            479999999999999999999999999999876431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                   .    .-....+.+.|.+.  +++++.+++|+++...        .+.+.+|+++.+|.|+.|.|..
T Consensus       187 -------------d----~~~~~~~~~~l~~~--gV~i~~~~~v~~~~~~--------~v~~~~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          187 -------------D----ADMNQPILDELDKR--EIPYRLNEEINAINGN--------EITFKSGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             -------------C----GGGGHHHHHHHHHT--TCCEEESCCEEEEETT--------EEEETTSCEEECSEEEECCCEE
T ss_pred             -------------c----chhHHHHHHHhhcc--ceEEEeccEEEEecCC--------eeeecCCeEEeeeeEEEEecee
Confidence                         0    00123445555543  8999999999887422        2567899999999999999976


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      .+
T Consensus       240 Pn  241 (437)
T 4eqs_A          240 PN  241 (437)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.47  E-value=8.9e-07  Score=72.70  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=74.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRR----LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      .+|+|||||..|+-+|..|++    .|.+|+++++.+.+....                 +                   
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~-----------------l-------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------L-------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------S-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-----------------C-------------------
Confidence            589999999999999999987    478899998764321000                 0                   


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                                       +.    -....+.+.+.+.  +++++.+++|+++..++   .. +.|.+.+|+++.||.||.|
T Consensus       225 -----------------~~----~~~~~~~~~l~~~--GV~v~~~~~V~~i~~~~---~~-~~v~l~dG~~i~aD~Vv~a  277 (493)
T 1m6i_A          225 -----------------PE----YLSNWTMEKVRRE--GVKVMPNAIVQSVGVSS---GK-LLIKLKDGRKVETDHIVAA  277 (493)
T ss_dssp             -----------------CH----HHHHHHHHHHHTT--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEEC
T ss_pred             -----------------CH----HHHHHHHHHHHhc--CCEEEeCCEEEEEEecC---Ce-EEEEECCCCEEECCEEEEC
Confidence                             00    0012233344432  89999999999998653   33 6788899999999999999


Q ss_pred             CCCchh--hhhhhcC
Q 044609          162 DGVHSM--VAQWLGL  174 (232)
Q Consensus       162 ~G~~S~--~r~~~~~  174 (232)
                      .|..++  +.+.+++
T Consensus       278 ~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          278 VGLEPNVELAKTGGL  292 (493)
T ss_dssp             CCEEECCTTHHHHTC
T ss_pred             CCCCccHHHHHHcCC
Confidence            998754  3444443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.45  E-value=1.2e-07  Score=77.91  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEec
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR-LGIKALVLEK   36 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~   36 (232)
                      +++||+|||||++|+++|..|++ .|++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            35899999999999999999999 9999999994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.44  E-value=1.5e-07  Score=80.42  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++||+|||||++|+++|+.|+++|++|+|||+.+..
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            479999999999999999999999999999998755

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.44  E-value=2.9e-06  Score=69.39  Aligned_cols=100  Identities=18%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+-..                  ...                     
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~d~---------------------  228 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------FDS---------------------  228 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------SCH---------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc------------------cCH---------------------
Confidence            58999999999999999999999999999987643110                  000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---C----cEEEccEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---S----TIIKAKVL  158 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g----~~~~a~~v  158 (232)
                                         -....+.+.|.+.  +++++.+++|++++..++ +.. +.+.+.+   |    .++.+|.|
T Consensus       229 -------------------~~~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~~~~g~~~g~~~~~D~v  285 (478)
T 3dk9_A          229 -------------------MISTNCTEELENA--GVEVLKFSQVKEVKKTLS-GLE-VSMVTAVPGRLPVMTMIPDVDCL  285 (478)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEETTEEEEEEEECSS-SEE-EEEEECCTTSCCEEEEEEEESEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC-CcE-EEEEEccCCCCcccceEEEcCEE
Confidence                               0022334444443  899999999999987642 323 5666665   2    57899999


Q ss_pred             EecCCCchh
Q 044609          159 IGCDGVHSM  167 (232)
Q Consensus       159 V~A~G~~S~  167 (232)
                      |.|.|....
T Consensus       286 i~a~G~~p~  294 (478)
T 3dk9_A          286 LWAIGRVPN  294 (478)
T ss_dssp             EECSCEEES
T ss_pred             EEeeccccC
Confidence            999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.44  E-value=3.2e-06  Score=65.00  Aligned_cols=94  Identities=14%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  181 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA------------------------------------------  181 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCC------------------------------------------
Confidence            58999999999999999999999999999986533100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~  160 (232)
                                            ..+.+.+.+. .+++++++++++++..++  +.. ..|.+.   +|+  ++.+|.||.
T Consensus       182 ----------------------~~~~~~l~~~-~gv~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~  235 (311)
T 2q0l_A          182 ----------------------PITLEHAKNN-DKIEFLTPYVVEEIKGDA--SGV-SSLSIKNTATNEKRELVVPGFFI  235 (311)
T ss_dssp             ----------------------HHHHHHHHTC-TTEEEETTEEEEEEEEET--TEE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----------------------HHHHHHHhhC-CCeEEEeCCEEEEEECCC--CcE-eEEEEEecCCCceEEEecCEEEE
Confidence                                  0123333321 378999999999998653  221 234443   565  789999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       236 a~G~~p~  242 (311)
T 2q0l_A          236 FVGYDVN  242 (311)
T ss_dssp             CSCEEEC
T ss_pred             EecCccC
Confidence            9998654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.43  E-value=2.2e-07  Score=77.33  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||++|||+|++|+++|..|++.|++|+|||++...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999999998643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.42  E-value=1.2e-06  Score=71.38  Aligned_cols=135  Identities=11%  Similarity=0.191  Sum_probs=75.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcce----eeeecccHHHHHHHcCChHH--HHhhccCceee
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGA----ALTLSPNAWLALDALGVSHK--LTSVYAPAKRV   76 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~--~~~~~~~~~~~   76 (232)
                      ..+|+|||+|.+|+-+|..|++.  +.+|++++|.+.......    ...+.+.....+..+.....  +......    
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~----  302 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN----  302 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG----
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhc----
Confidence            46899999999999999999998  899999999876422110    00111222222222211000  0000000    


Q ss_pred             EEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhh----hCCCCeEEeCceEEEEEecCCCCCccEEEEeC---C
Q 044609           77 FVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALAD----ELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---D  149 (232)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~  149 (232)
                                  ..+.      .... .+ ...+.+.+++    .-.+++++.+++|++++.++   .. +.|.+.   +
T Consensus       303 ------------~~~~------~~~~-~~-~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~  358 (463)
T 3s5w_A          303 ------------TNYS------VVDT-DL-IERIYGVFYRQKVSGIPRHAFRCMTTVERATATA---QG-IELALRDAGS  358 (463)
T ss_dssp             ------------GTSS------CBCH-HH-HHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET---TE-EEEEEEETTT
T ss_pred             ------------cCCC------cCCH-HH-HHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC---CE-EEEEEEEcCC
Confidence                        0000      0000 00 0111111111    11478999999999998763   33 666665   5


Q ss_pred             Cc--EEEccEEEecCCCchh
Q 044609          150 ST--IIKAKVLIGCDGVHSM  167 (232)
Q Consensus       150 g~--~~~a~~vV~A~G~~S~  167 (232)
                      |+  ++.+|.||.|+|....
T Consensus       359 g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          359 GELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEECCEEEEeeCCCCC
Confidence            65  5899999999998754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.41  E-value=1.7e-07  Score=77.57  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~~   39 (232)
                      .+||+||||+|.+|+.+|..|++ .+++|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            35999999999999999999998 6899999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.39  E-value=4.1e-07  Score=74.30  Aligned_cols=56  Identities=13%  Similarity=0.242  Sum_probs=44.4

Q ss_pred             HHHHHHHhhhCC----------CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          108 QSLLEALADELP----------DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       108 ~~l~~~l~~~~~----------~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ..+.+.|.+.+.          +.+++++++|++|..++   .. +.|++.+|+++.||.||.|++....
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~---~~-v~v~~~~g~~~~ad~vI~a~~~~~l  271 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP---GG-VTVKTEDNSVYSADYVMVSASLGVL  271 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS---SC-EEEEETTSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcC---Cc-EEEEECCCCEEEcCEEEEecCHHHh
Confidence            366777776653          46899999999998864   34 7789999989999999999987543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.39  E-value=2.9e-06  Score=69.19  Aligned_cols=98  Identities=24%  Similarity=0.393  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-..                  .                       
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~-----------------------  211 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT------------------L-----------------------  211 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC------------------C-----------------------
Confidence            57999999999999999999999999999987643110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC--CCc--EEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG--DST--IIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g~--~~~a~~vV~A  161 (232)
                                          ....+.+.+.+.+. ++++.+++|+++..++  ... +.+.+.  +|+  ++.+|.||.|
T Consensus       212 --------------------~d~~~~~~l~~~l~-v~i~~~~~v~~i~~~~--~~~-v~v~~~~~~G~~~~i~~D~vi~a  267 (466)
T 3l8k_A          212 --------------------EDQDIVNTLLSILK-LNIKFNSPVTEVKKIK--DDE-YEVIYSTKDGSKKSIFTNSVVLA  267 (466)
T ss_dssp             --------------------CCHHHHHHHHHHHC-CCEECSCCEEEEEEEE--TTE-EEEEECCTTSCCEEEEESCEEEC
T ss_pred             --------------------CCHHHHHHHHhcCE-EEEEECCEEEEEEEcC--CCc-EEEEEEecCCceEEEEcCEEEEC
Confidence                                00122233333332 8899999999998753  133 667776  675  8999999999


Q ss_pred             CCCchhh
Q 044609          162 DGVHSMV  168 (232)
Q Consensus       162 ~G~~S~~  168 (232)
                      +|.....
T Consensus       268 ~G~~p~~  274 (466)
T 3l8k_A          268 AGRRPVI  274 (466)
T ss_dssp             CCEEECC
T ss_pred             cCCCccc
Confidence            9987643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.38  E-value=4e-06  Score=68.66  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+++|||+|..|+-+|..|++.|.+|+++++......                   +..                     
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~---------------------  227 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG-------------------FDQ---------------------  227 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT-------------------SCH---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc-------------------cCH---------------------
Confidence            5799999999999999999999999999997421100                   000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc-----EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST-----IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~-----~~~a~~vV~  160 (232)
                                         -....+.+.|.+.  +++++.+++|.+++..+  +.. +.|.+.++.     ++.+|.||.
T Consensus       228 -------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~--~~~-~~v~~~~~~~~~~~~~~~D~vi~  283 (483)
T 3dgh_A          228 -------------------QMAELVAASMEER--GIPFLRKTVPLSVEKQD--DGK-LLVKYKNVETGEESEDVYDTVLW  283 (483)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCCEEETEEEEEEEECT--TSC-EEEEEEETTTCCEEEEEESEEEE
T ss_pred             -------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcC--CCc-EEEEEecCCCCceeEEEcCEEEE
Confidence                               0112334444443  89999999999998754  223 556665543     789999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       284 a~G~~p~  290 (483)
T 3dgh_A          284 AIGRKGL  290 (483)
T ss_dssp             CSCEEEC
T ss_pred             CcccccC
Confidence            9998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.37  E-value=3e-07  Score=77.34  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .++||+||||||+|+++|..|++.|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4589999999999999999999999999999984

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.37  E-value=4.2e-07  Score=78.13  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            479999999999999999999999999999998765

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.36  E-value=2.6e-07  Score=75.10  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-C------CCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR-L------GIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~-~------g~~v~viE~~~~~   40 (232)
                      ..+||+|||||++|+++|..|++ .      |++|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            45799999999999999999999 7      9999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.36  E-value=5.2e-06  Score=64.05  Aligned_cols=93  Identities=12%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~------------------------------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE------------------------------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC------------------------------------------
Confidence            57999999999999999999999999999986532100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~  160 (232)
                                            ..+.+.+.+  .+++++++++|+++..++  +.. ..+.+.   +|+  ++.+|.||.
T Consensus       194 ----------------------~~l~~~l~~--~gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~  246 (319)
T 3cty_A          194 ----------------------NAYVQEIKK--RNIPYIMNAQVTEIVGDG--KKV-TGVKYKDRTTGEEKLIETDGVFI  246 (319)
T ss_dssp             ----------------------HHHHHHHHH--TTCCEECSEEEEEEEESS--SSE-EEEEEEETTTCCEEEECCSEEEE
T ss_pred             ----------------------HHHHHHHhc--CCcEEEcCCeEEEEecCC--ceE-EEEEEEEcCCCceEEEecCEEEE
Confidence                                  112333333  388999999999998753  322 344443   564  689999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       247 a~G~~p~  253 (319)
T 3cty_A          247 YVGLIPQ  253 (319)
T ss_dssp             CCCEEEC
T ss_pred             eeCCccC
Confidence            9998754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.35  E-value=2.1e-07  Score=77.22  Aligned_cols=36  Identities=36%  Similarity=0.439  Sum_probs=33.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||+||||+|.+|+++|..|++ |.+|+|||+++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            45899999999999999999999 9999999998653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.35  E-value=2e-06  Score=67.76  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+......               +                     ..  
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~---------------~---------------------d~--  208 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD---------------A---------------------DP--  208 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------------C--
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC---------------C---------------------CC--
Confidence            489999999999999999999999999999875431100               0                     00  


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCC-CeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE-ccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPD-DTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK-AKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~-a~~vV~A~G  163 (232)
                            . ...  +    ...+..+.+.|.+  .+ ++++.+++|.++..++   .. +.+.+.+|+++. +|.||.|+|
T Consensus       209 ------~-~~~--~----~~~~~~l~~~l~~--~g~v~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~d~vi~a~G  269 (369)
T 3d1c_A          209 ------S-VRL--S----PYTRQRLGNVIKQ--GARIEMNVHYTVKDIDFNN---GQ-YHISFDSGQSVHTPHEPILATG  269 (369)
T ss_dssp             ------T-TSC--C----HHHHHHHHHHHHT--TCCEEEECSCCEEEEEEET---TE-EEEEESSSCCEEESSCCEECCC
T ss_pred             ------C-ccC--C----HHHHHHHHHHHhh--CCcEEEecCcEEEEEEecC---Cc-eEEEecCCeEeccCCceEEeec
Confidence                  0 000  0    0012333444443  25 8999999999997643   33 677888887665 599999999


Q ss_pred             Cchh
Q 044609          164 VHSM  167 (232)
Q Consensus       164 ~~S~  167 (232)
                      ....
T Consensus       270 ~~~~  273 (369)
T 3d1c_A          270 FDAT  273 (369)
T ss_dssp             BCGG
T ss_pred             cCCc
Confidence            8754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.33  E-value=5.4e-07  Score=75.49  Aligned_cols=40  Identities=35%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~~~   40 (232)
                      |.+.+||++|||+|++|+++|..|++ .|.+|+|||++...
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            34456999999999999999999999 79999999998643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.32  E-value=8.6e-06  Score=63.00  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN------------------------------------------  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcc------------------------------------------
Confidence            57999999999999999999999999999987543100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~  160 (232)
                                            ..+.+.+.+. .+++++.+++|+++..+   +.. ..|.+.   +|+  ++.+|.||.
T Consensus       191 ----------------------~~~~~~l~~~-~gv~i~~~~~v~~i~~~---~~v-~~v~~~~~~~g~~~~i~~D~vi~  243 (325)
T 2q7v_A          191 ----------------------KVAQARAFAN-PKMKFIWDTAVEEIQGA---DSV-SGVKLRNLKTGEVSELATDGVFI  243 (325)
T ss_dssp             ----------------------HHHHHHHHTC-TTEEEECSEEEEEEEES---SSE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----------------------hHHHHHHHhc-CCceEecCCceEEEccC---CcE-EEEEEEECCCCcEEEEEcCEEEE
Confidence                                  0122223221 37899999999999864   332 344443   564  789999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       244 a~G~~p~  250 (325)
T 2q7v_A          244 FIGHVPN  250 (325)
T ss_dssp             CSCEEES
T ss_pred             ccCCCCC
Confidence            9998653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.31  E-value=9.8e-06  Score=66.44  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++......                   +..                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~---------------------  225 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG-------------------FDQ---------------------  225 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc-------------------CCH---------------------
Confidence            5799999999999999999999999999997532100                   000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---Cc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---ST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g~--~~~a~~vV~  160 (232)
                                         -....+.+.|.+.  +++++.++++.++...+  +.. +.+.+.+   |+  ++.+|.||.
T Consensus       226 -------------------~~~~~l~~~l~~~--gv~~~~~~~v~~i~~~~--~~~-~~v~~~~~~~g~~~~~~~D~vi~  281 (488)
T 3dgz_A          226 -------------------QMSSLVTEHMESH--GTQFLKGCVPSHIKKLP--TNQ-LQVTWEDHASGKEDTGTFDTVLW  281 (488)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEEETEEEEEEEECT--TSC-EEEEEEETTTTEEEEEEESEEEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEcC--CCc-EEEEEEeCCCCeeEEEECCEEEE
Confidence                               0112334444443  89999999999998754  232 4454433   54  578999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       282 a~G~~p~  288 (488)
T 3dgz_A          282 AIGRVPE  288 (488)
T ss_dssp             CSCEEES
T ss_pred             cccCCcc
Confidence            9998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.31  E-value=7.1e-07  Score=76.07  Aligned_cols=36  Identities=25%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            479999999999999999999999999999998765

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.31  E-value=6.5e-07  Score=76.14  Aligned_cols=37  Identities=38%  Similarity=0.680  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.++
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4799999999999999999999999999999987653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.30  E-value=5e-07  Score=75.36  Aligned_cols=36  Identities=33%  Similarity=0.434  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      .+||+||||||.||+++|..|++.+ .+|+|||+++.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999987 79999999876

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.30  E-value=7.7e-06  Score=62.79  Aligned_cols=94  Identities=17%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  185 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA------------------------------------------  185 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC------------------------------------------
Confidence            57999999999999999999999999999987543100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCc-cEEEEeCCCc--EEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSS-AAIINLGDST--IIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~-~~~v~~~~g~--~~~a~~vV~A~  162 (232)
                                            ..+.+.+.+ ..+++++++++|.++..++  +.. .+.+...+|+  ++.+|.||.|.
T Consensus       186 ----------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D~vv~a~  240 (315)
T 3r9u_A          186 ----------------------PSTVEKVKK-NEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVPGIFTFV  240 (315)
T ss_dssp             ----------------------HHHHHHHHH-CTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCSCEEECS
T ss_pred             ----------------------HHHHHHHHh-cCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecCeEEEEE
Confidence                                  011222222 2388999999999998764  232 1333334775  78999999999


Q ss_pred             CCch
Q 044609          163 GVHS  166 (232)
Q Consensus       163 G~~S  166 (232)
                      |...
T Consensus       241 G~~p  244 (315)
T 3r9u_A          241 GLNV  244 (315)
T ss_dssp             CEEE
T ss_pred             cCCC
Confidence            9764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.29  E-value=5.4e-06  Score=64.37  Aligned_cols=96  Identities=11%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+...       +   .                              
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~-------~---~------------------------------  192 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH-------E---A------------------------------  192 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC-------H---H------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc-------H---H------------------------------
Confidence            58999999999999999999999999999987643110       0   0                              


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CC--cEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DS--TIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g--~~~~a~~vV~  160 (232)
                                          ....+.+.+.+  .+++++.+++|.++..+   +.. ..|.+.   +|  .++.+|.||.
T Consensus       193 --------------------~~~~l~~~l~~--~gv~v~~~~~v~~i~~~---~~~-~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2zbw_A          193 --------------------SVKELMKAHEE--GRLEVLTPYELRRVEGD---ERV-RWAVVFHNQTQEELALEVDAVLI  246 (335)
T ss_dssp             --------------------HHHHHHHHHHT--TSSEEETTEEEEEEEES---SSE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             --------------------HHHHHHhcccc--CCeEEecCCcceeEccC---CCe-eEEEEEECCCCceEEEecCEEEE
Confidence                                01123333433  28899999999999874   332 344444   66  5799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|..+.
T Consensus       247 a~G~~p~  253 (335)
T 2zbw_A          247 LAGYITK  253 (335)
T ss_dssp             CCCEEEE
T ss_pred             eecCCCC
Confidence            9998764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.29  E-value=4.4e-06  Score=67.74  Aligned_cols=97  Identities=21%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+....                                         
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS-----------------------------------------  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------------------------------
Confidence            489999999999999999999999999999876431100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                               .   ..    -....+.+.|.+   .++++.+++|.++..+   +.  +.....+++++.||.||.|+|..
T Consensus       188 ---------~---~~----~~~~~l~~~l~~---~v~i~~~~~v~~i~~~---~~--v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          188 ---------F---DK----EVTDILEEKLKK---HVNLRLQEITMKIEGE---ER--VEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             ---------S---CH----HHHHHHHHHHTT---TSEEEESCCEEEEECS---SS--CCEEEETTEEEECSEEEECSCEE
T ss_pred             ---------c---CH----HHHHHHHHHHHh---CcEEEeCCeEEEEecc---Cc--EEEEEeCCCEEECCEEEEeeCCc
Confidence                     0   00    011223333332   2889999999999754   22  32234567789999999999987


Q ss_pred             hh
Q 044609          166 SM  167 (232)
Q Consensus       166 S~  167 (232)
                      ..
T Consensus       244 p~  245 (449)
T 3kd9_A          244 PN  245 (449)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.29  E-value=1.3e-06  Score=68.70  Aligned_cols=97  Identities=20%  Similarity=0.271  Sum_probs=68.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...       +   .                              
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------~---~------------------------------  203 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH-------G---K------------------------------  203 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC-------S---H------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC-------H---H------------------------------
Confidence            47999999999999999999999999999987643110       0   0                              


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe--CCC--cEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL--GDS--TIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~g--~~~~a~~vV~A  161 (232)
                                          ....+.+.+.+  .+++++++++|+++..++  +.. ..|.+  .+|  .++.+|.||.|
T Consensus       204 --------------------~~~~l~~~~~~--~gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~g~~~~i~~D~vi~a  258 (360)
T 3ab1_A          204 --------------------TAHEVERARAN--GTIDVYLETEVASIEESN--GVL-TRVHLRSSDGSKWTVEADRLLIL  258 (360)
T ss_dssp             --------------------HHHSSHHHHHH--TSEEEESSEEEEEEEEET--TEE-EEEEEEETTCCEEEEECSEEEEC
T ss_pred             --------------------HHHHHHHHhhc--CceEEEcCcCHHHhccCC--Cce-EEEEEEecCCCeEEEeCCEEEEC
Confidence                                00111222222  278999999999998763  332 23444  477  57999999999


Q ss_pred             CCCchh
Q 044609          162 DGVHSM  167 (232)
Q Consensus       162 ~G~~S~  167 (232)
                      +|....
T Consensus       259 ~G~~p~  264 (360)
T 3ab1_A          259 IGFKSN  264 (360)
T ss_dssp             CCBCCS
T ss_pred             CCCCCC
Confidence            997654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.28  E-value=8.2e-07  Score=77.12  Aligned_cols=37  Identities=38%  Similarity=0.680  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++|+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            4799999999999999999999999999999987653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.28  E-value=9.9e-06  Score=62.16  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=68.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD------------------------------------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCcc------------------------------------------
Confidence            57999999999999999999999999999987543100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~  160 (232)
                                            ..+.+.|.+ ..+++++.+++++++..++  +.. ..|.+.   +|+  ++.+|.||.
T Consensus       183 ----------------------~~~~~~l~~-~~gv~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~  236 (310)
T 1fl2_A          183 ----------------------QVLQDKLRS-LKNVDIILNAQTTEVKGDG--SKV-VGLEYRDRVSGDIHNIELAGIFV  236 (310)
T ss_dssp             ----------------------HHHHHHHHT-CTTEEEESSEEEEEEEESS--SSE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----------------------HHHHHHHhh-CCCeEEecCCceEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEE
Confidence                                  012333333 2378999999999998653  332 244443   353  689999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|....
T Consensus       237 a~G~~p~  243 (310)
T 1fl2_A          237 QIGLLPN  243 (310)
T ss_dssp             CSCEEES
T ss_pred             eeCCccC
Confidence            9997653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.26  E-value=7.2e-07  Score=74.13  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~   40 (232)
                      |..+++|++|||+|++|+++|..|++. |.+|+|||++...
T Consensus         9 ~~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A            9 LSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            334569999999999999999999998 8999999998643

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.24  E-value=8.1e-07  Score=74.14  Aligned_cols=35  Identities=37%  Similarity=0.564  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~   38 (232)
                      .+||+||||||.+|+++|..|++. +.+|+|||+++
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            459999999999999999999974 89999999987

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.23  E-value=1.4e-05  Score=62.05  Aligned_cols=95  Identities=16%  Similarity=0.240  Sum_probs=67.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+..                                           
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-------------------------------------------  196 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------------------------------------------  196 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-------------------------------------------
Confidence            5899999999999999999999999999998764310                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCC-CccEEEEeC---CC--cEEEccEEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNG-SSAAIINLG---DS--TIIKAKVLI  159 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g-~~~~~v~~~---~g--~~~~a~~vV  159 (232)
                                           ...+.+.+.+. .+++++++++|.++..+++ + .. ..+.+.   +|  .++.||.||
T Consensus       197 ---------------------~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~-~~~v-~~v~~~~~~~g~~~~i~~D~vi  252 (333)
T 1vdc_A          197 ---------------------SKIMQQRALSN-PKIDVIWNSSVVEAYGDGE-RDVL-GGLKVKNVVTGDVSDLKVSGLF  252 (333)
T ss_dssp             ---------------------CHHHHHHHHTC-TTEEEECSEEEEEEEESSS-SSSE-EEEEEEETTTCCEEEEECSEEE
T ss_pred             ---------------------cHHHHHHHHhC-CCeeEecCCceEEEeCCCC-ccce-eeEEEEecCCCceEEEecCEEE
Confidence                                 00112222221 3789999999999987531 1 22 234443   45  478999999


Q ss_pred             ecCCCchh
Q 044609          160 GCDGVHSM  167 (232)
Q Consensus       160 ~A~G~~S~  167 (232)
                      .|+|....
T Consensus       253 ~a~G~~p~  260 (333)
T 1vdc_A          253 FAIGHEPA  260 (333)
T ss_dssp             ECSCEEES
T ss_pred             EEeCCccc
Confidence            99998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.22  E-value=1.2e-06  Score=72.22  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=33.6

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +.++|++|||+|++|+++|..|++.|.+|+|||++..
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            3568999999999999999999999999999999863

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.22  E-value=1.2e-06  Score=78.03  Aligned_cols=36  Identities=31%  Similarity=0.527  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~   40 (232)
                      .+||+||||||+|+++|..|++.|+ +|+|||+.+.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4799999999999999999999999 79999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.21  E-value=1.5e-05  Score=61.34  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  192 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ------------------------------------------  192 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcC------------------------------------------
Confidence            58999999999999999999999999999987543110                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC---Cc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD---ST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---g~--~~~a~~vV~  160 (232)
                                            ..+.+.+.+ ..+++++.+++|+++..+   +.. ..|.+.+   |+  ++.+|.||.
T Consensus       193 ----------------------~~~~~~~~~-~~gv~~~~~~~v~~i~~~---~~~-~~v~~~~~~~g~~~~~~~D~vv~  245 (323)
T 3f8d_A          193 ----------------------PIYVETVKK-KPNVEFVLNSVVKEIKGD---KVV-KQVVVENLKTGEIKELNVNGVFI  245 (323)
T ss_dssp             ----------------------HHHHHHHHT-CTTEEEECSEEEEEEEES---SSE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----------------------HHHHHHHHh-CCCcEEEeCCEEEEEecc---Cce-eEEEEEECCCCceEEEEcCEEEE
Confidence                                  012233332 137899999999999865   233 4455544   65  799999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|....
T Consensus       246 a~G~~p~  252 (323)
T 3f8d_A          246 EIGFDPP  252 (323)
T ss_dssp             CCCEECC
T ss_pred             EECCCCC
Confidence            9998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.19  E-value=3.4e-06  Score=70.75  Aligned_cols=56  Identities=21%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDAL   60 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~   60 (232)
                      ++|||+|||+|+.|+.+|..|++.|.+|++|||++..+.....+.+ ....+++++.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l-~~l~~w~~~~   62 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEY   62 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH-HHHHHHHHHh
Confidence            4699999999999999999999999999999999988655444443 2344444444

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.16  E-value=1.5e-06  Score=70.66  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~   40 (232)
                      ..+||+|||||++|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            3479999999999999999999988  999999998765

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.16  E-value=8e-07  Score=73.98  Aligned_cols=36  Identities=36%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRR-LGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~-~g~~v~viE~~~~~   40 (232)
                      +||+||||||.+|+++|..|++ .+.+|+|||+++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999998 69999999998643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.15  E-value=2e-06  Score=70.80  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .++|++|||+|++|+++|..|++.|.+|+|||++..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            459999999999999999999999999999999853

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.14  E-value=8.5e-06  Score=67.68  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||+|.+|+-+|..|++.+.+|++++|.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            58999999999999999999999999999998863

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.13  E-value=1.7e-05  Score=65.75  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||+|.+|+-+|..|++.+.+|++++|.+..
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQY  213 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            58999999999999999999999999999998863

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.08  E-value=1.6e-06  Score=73.68  Aligned_cols=36  Identities=28%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC--------CcEEEEecCC-CC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG--------IKALVLEKSD-GL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g--------~~v~viE~~~-~~   40 (232)
                      .++|+|||||++|+++|+.|++.|        ++|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            368999999999999999999988        9999999987 65

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.08  E-value=5.9e-05  Score=62.34  Aligned_cols=101  Identities=13%  Similarity=0.102  Sum_probs=67.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++......                   +..                     
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d~---------------------  250 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FDQ---------------------  250 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCH---------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc-------------------CCH---------------------
Confidence            5799999999999999999999999999997421100                   000                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCC-CCc-cEEEEeCCCc---EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLN-GSS-AAIINLGDST---IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~-g~~-~~~v~~~~g~---~~~a~~vV~  160 (232)
                                         --...+.+.|.+.  +++++.++++.++...++. ... .+.+...++.   ++.+|.||.
T Consensus       251 -------------------~~~~~~~~~l~~~--GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~  309 (519)
T 3qfa_A          251 -------------------DMANKIGEHMEEH--GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML  309 (519)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEE
T ss_pred             -------------------HHHHHHHHHHHHC--CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEE
Confidence                               0122233444443  8999999988888764310 122 1333445552   568999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|....
T Consensus       310 a~G~~p~  316 (519)
T 3qfa_A          310 AIGRDAC  316 (519)
T ss_dssp             CSCEEES
T ss_pred             ecCCccc
Confidence            9998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.07  E-value=2.1e-05  Score=61.08  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+..                                        .  
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~----------------------------------------~--  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA----------------------------------------S--  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS----------------------------------------C--
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc----------------------------------------c--
Confidence            5899999999999999999999999999998653310                                        0  


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCC--cEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDS--TIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g--~~~~a~~vV~A~  162 (232)
                                   .         .+.+.+.+ ..+++++.+++|+++..++. ... +.+.. .+|  .++.+|.||.|+
T Consensus       194 -------------~---------~~~~~~~~-~~gV~v~~~~~v~~i~~~~~-~~~-v~~~~~~~g~~~~i~~D~vi~a~  248 (335)
T 2a87_A          194 -------------K---------IMLDRARN-NDKIRFLTNHTVVAVDGDTT-VTG-LRVRDTNTGAETTLPVTGVFVAI  248 (335)
T ss_dssp             -------------T---------THHHHHHH-CTTEEEECSEEEEEEECSSS-CCE-EEEEEETTSCCEEECCSCEEECS
T ss_pred             -------------H---------HHHHHHhc-cCCcEEEeCceeEEEecCCc-EeE-EEEEEcCCCceEEeecCEEEEcc
Confidence                         0         01112222 13889999999999986531 112 33332 245  478999999999


Q ss_pred             CCchh
Q 044609          163 GVHSM  167 (232)
Q Consensus       163 G~~S~  167 (232)
                      |....
T Consensus       249 G~~p~  253 (335)
T 2a87_A          249 GHEPR  253 (335)
T ss_dssp             CEEEC
T ss_pred             CCccC
Confidence            98653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.07  E-value=4.7e-05  Score=64.04  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|+|||||..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999986

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.07  E-value=1.7e-05  Score=65.15  Aligned_cols=51  Identities=16%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCc----EEEccEEEecCCCc
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDST----IIKAKVLIGCDGVH  165 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~----~~~a~~vV~A~G~~  165 (232)
                      .+.+.|.+.  |++++.+++|++++.+.   .. ..+...||+    ++.||.||.|+|..
T Consensus       277 ~~~~~L~~~--GV~v~~~~~v~~v~~~~---~~-~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          277 YAQSHLENT--SIKVHLRTAVAKVEEKQ---LL-AKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHT--TCEEETTEEEEEECSSE---EE-EEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHhc--ceeeecCceEEEEeCCc---eE-EEEEecCcccceeeeccCEEEEccCCc
Confidence            344455543  89999999999986442   22 445556764    68999999999964

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.01  E-value=2.5e-05  Score=60.34  Aligned_cols=92  Identities=20%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|..|+-+|..|++.+.+|+++++.+.+...                    +                     
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--------------------~---------------------  193 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--------------------E---------------------  193 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--------------------H---------------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--------------------H---------------------
Confidence            57999999999999999999999999999987543110                    0                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-----CcEEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-----STIIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-----g~~~~a~~vV~  160 (232)
                                             ...+.|.+  .+++++.+++|.++..++  + . ..|.+.+     +.++.+|.||.
T Consensus       194 -----------------------~~~~~l~~--~gv~~~~~~~v~~i~~~~--~-~-~~v~~~~~~~g~~~~~~~D~vv~  244 (332)
T 3lzw_A          194 -----------------------HSVENLHA--SKVNVLTPFVPAELIGED--K-I-EQLVLEEVKGDRKEILEIDDLIV  244 (332)
T ss_dssp             -----------------------HHHHHHHH--SSCEEETTEEEEEEECSS--S-C-CEEEEEETTSCCEEEEECSEEEE
T ss_pred             -----------------------HHHHHHhc--CCeEEEeCceeeEEecCC--c-e-EEEEEEecCCCceEEEECCEEEE
Confidence                                   00112332  288999999999998754  2 2 4444443     34789999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|....
T Consensus       245 a~G~~p~  251 (332)
T 3lzw_A          245 NYGFVSS  251 (332)
T ss_dssp             CCCEECC
T ss_pred             eeccCCC
Confidence            9998653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.99  E-value=4e-05  Score=65.56  Aligned_cols=97  Identities=8%  Similarity=0.065  Sum_probs=69.9

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            6 EDVVIIG--AGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         6 ~dV~IvG--~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+......                                     . 
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~-------------------------------------~-  565 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT-------------------------------------N-  565 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG-------------------------------------G-
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc-------------------------------------c-
Confidence            4699999  99999999999999999999999876431100                                     0 


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe---CCCcEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL---GDSTIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~---~~g~~~~a~~vV~  160 (232)
                                     .    ......+.+.|.+.  +++++.+++|+++..+.      ..+..   .+++++.||.||.
T Consensus       566 ---------------~----~~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~------~~v~~~~~~~~~~i~aD~VV~  618 (690)
T 3k30_A          566 ---------------N----TFEVNRIQRRLIEN--GVARVTDHAVVAVGAGG------VTVRDTYASIERELECDAVVM  618 (690)
T ss_dssp             ---------------G----GTCHHHHHHHHHHT--TCEEEESEEEEEEETTE------EEEEETTTCCEEEEECSEEEE
T ss_pred             ---------------c----chhHHHHHHHHHHC--CCEEEcCcEEEEEECCe------EEEEEccCCeEEEEECCEEEE
Confidence                           0    00133455555553  89999999999997542      33432   2456899999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |+|..+.
T Consensus       619 A~G~~p~  625 (690)
T 3k30_A          619 VTARLPR  625 (690)
T ss_dssp             ESCEEEC
T ss_pred             CCCCCCC
Confidence            9998653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.98  E-value=2.4e-05  Score=63.43  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~   39 (232)
                      .+|+|||+|.+|+=+|..|++.+.+ |+++++.+.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            5799999999999999999999999 999998653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.95  E-value=6.6e-05  Score=57.00  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|++|+-+|..|++.| +|+++++.+..                     +                       
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~---------------------~-----------------------  176 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE---------------------P-----------------------  176 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC---------------------C-----------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC---------------------C-----------------------
Confidence            58999999999999999999999 99999865420                     0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVH  165 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~  165 (232)
                                           ...+.+.|.+.  +++++. ++|.++..+   +    .|.+.+|+++.+|.||.|+|..
T Consensus       177 ---------------------~~~~~~~l~~~--gv~i~~-~~v~~i~~~---~----~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          177 ---------------------DADQHALLAAR--GVRVET-TRIREIAGH---A----DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             ---------------------CHHHHHHHHHT--TCEEEC-SCEEEEETT---E----EEEETTSCEEEESEEEECCEEE
T ss_pred             ---------------------CHHHHHHHHHC--CcEEEc-ceeeeeecC---C----eEEeCCCCEEEEEEEEEccCcc
Confidence                                 01123344433  788875 888888643   1    4667899999999999999986


Q ss_pred             h
Q 044609          166 S  166 (232)
Q Consensus       166 S  166 (232)
                      .
T Consensus       226 p  226 (297)
T 3fbs_A          226 I  226 (297)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.94  E-value=9.9e-05  Score=61.00  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+....                                           
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~-------------------------------------------  392 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------------------------------------  392 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc-------------------------------------------
Confidence            5899999999999999999999999999998654210                                           


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEEe
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLIG  160 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV~  160 (232)
                                   .        ..+.+.|.+ .++++++.+++++++..++  +.. ..+.+.   +|+  ++.+|.||.
T Consensus       393 -------------~--------~~l~~~l~~-~~gV~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~  447 (521)
T 1hyu_A          393 -------------D--------QVLQDKVRS-LKNVDIILNAQTTEVKGDG--SKV-VGLEYRDRVSGDIHSVALAGIFV  447 (521)
T ss_dssp             -------------C--------HHHHHHHTT-CTTEEEECSEEEEEEEECS--SSE-EEEEEEETTTCCEEEEECSEEEE
T ss_pred             -------------C--------HHHHHHHhc-CCCcEEEeCCEEEEEEcCC--CcE-EEEEEEeCCCCceEEEEcCEEEE
Confidence                         0        012233332 2478999999999998653  332 344443   353  689999999


Q ss_pred             cCCCchh
Q 044609          161 CDGVHSM  167 (232)
Q Consensus       161 A~G~~S~  167 (232)
                      |.|...+
T Consensus       448 a~G~~pn  454 (521)
T 1hyu_A          448 QIGLLPN  454 (521)
T ss_dssp             CCCEEES
T ss_pred             CcCCCCC
Confidence            9997643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.83  E-value=2.2e-05  Score=65.27  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||+|.+|+-+|..|++.+.+|++++|.+..
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            58999999999999999999999999999998863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.82  E-value=0.0001  Score=60.06  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            5799999999999999999999999999998754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.74  E-value=0.00028  Score=54.06  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            5799999999999999999999999999997653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.68  E-value=0.0001  Score=63.44  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=31.0

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIG--AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG--~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||  ||..|+-+|..|++.|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4899999  99999999999999999999999876

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.66  E-value=0.00014  Score=64.53  Aligned_cols=91  Identities=11%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+.                      .                     
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~----------------------~---------------------  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS----------------------A---------------------  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC----------------------H---------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc----------------------h---------------------
Confidence            579999999999999999999999999999865330                      0                     


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-------C--cEEEcc
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-------S--TIIKAK  156 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-------g--~~~~a~  156 (232)
                                   .           .+.|.+  .+++++.++.|+++..+++ +.. ..|.+.+       |  +++.||
T Consensus       322 -------------~-----------~~~l~~--~GV~v~~~~~v~~i~~~~~-~~v-~~v~~~~~~~~~~~G~~~~i~~D  373 (965)
T 2gag_A          322 -------------A-----------AAQAVA--DGVQVISGSVVVDTEADEN-GEL-SAIVVAELDEARELGGTQRFEAD  373 (965)
T ss_dssp             -------------H-----------HHHHHH--TTCCEEETEEEEEEEECTT-SCE-EEEEEEEECTTCCEEEEEEEECS
T ss_pred             -------------h-----------HHHHHh--CCeEEEeCCEeEEEeccCC-CCE-EEEEEEeccccCCCCceEEEEcC
Confidence                         0           122333  2889999999999986311 332 2344432       4  579999


Q ss_pred             EEEecCCCchh
Q 044609          157 VLIGCDGVHSM  167 (232)
Q Consensus       157 ~vV~A~G~~S~  167 (232)
                      .||.|.|....
T Consensus       374 ~Vv~a~G~~P~  384 (965)
T 2gag_A          374 VLAVAGGFNPV  384 (965)
T ss_dssp             EEEEECCEEEC
T ss_pred             EEEECCCcCcC
Confidence            99999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.62  E-value=0.0003  Score=57.17  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALR--------------------RLGI-KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~--------------------~~g~-~v~viE~~~~~   40 (232)
                      .+|+|||+|..|+-+|..|+                    +.|. +|+|++|....
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            58999999999999999999                    5687 69999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.55  E-value=0.00014  Score=49.73  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4579999999999999999999999999999964

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.55  E-value=9.7e-05  Score=49.78  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|..|..+|..|.++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.54  E-value=7.9e-05  Score=59.17  Aligned_cols=36  Identities=28%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            589999999999999999999999999999988653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.53  E-value=0.00012  Score=49.26  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +-.|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.50  E-value=0.00015  Score=49.79  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|..|..+|..|.+.|.+|+++|+++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5899999999999999999999999999998754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.46  E-value=0.00036  Score=56.64  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--------------------GI-KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--------------------g~-~v~viE~~~~~   40 (232)
                      .+|+|||+|.+|+-+|..|++.                    |. +|+|+++....
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            5799999999999999999974                    54 89999987644

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.46  E-value=0.00059  Score=58.17  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             HHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecCCCchh
Q 044609          109 SLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       109 ~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~G~~S~  167 (232)
                      .+.+.|.+.  +++++.+++|+++..+     . +.+. .+|  +++.+|.||.|.|....
T Consensus       578 ~~~~~l~~~--GV~v~~~~~v~~i~~~-----~-v~~~-~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          578 IHRTTLLSR--GVKMIPGVSYQKIDDD-----G-LHVV-INGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHHHT--TCEEECSCEEEEEETT-----E-EEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHhc--CCEEEeCcEEEEEeCC-----e-EEEe-cCCeEEEEeCCEEEECCCcccc
Confidence            344455543  8999999999998632     2 4444 566  57999999999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.44  E-value=0.0002  Score=47.97  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.41  E-value=0.00021  Score=46.23  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      +...|+|+|+|..|..++..|.+.| .+|+++++++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3357999999999999999999999 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.38  E-value=0.00023  Score=47.88  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.34  E-value=0.0018  Score=57.87  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999996 899999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.32  E-value=0.00025  Score=55.56  Aligned_cols=38  Identities=34%  Similarity=0.432  Sum_probs=32.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+++..+|.|||+|..|.++|..|++.|++|.++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            45445689999999999999999999999999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.31  E-value=0.0004  Score=54.00  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|.+|+-+|..|++.+ +|+++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            58999999999999999999998 799999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.30  E-value=0.00022  Score=54.86  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|...|..+++.|++|+++|..+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.29  E-value=0.001  Score=53.60  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe--CC-----CcEEEccEEEecCCC
Q 044609          108 QSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL--GD-----STIIKAKVLIGCDGV  164 (232)
Q Consensus       108 ~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~--~~-----g~~~~a~~vV~A~G~  164 (232)
                      ..+.+.|.+.  +++++.+++|++++.+    .  +.+..  .+     +.++.+|.|+.|.|.
T Consensus       212 ~~~~~~l~~~--gI~~~~~~~v~~v~~~----~--v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEE--GIEAYTNCKVTKVEDN----K--MYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHT--TCEEECSEEEEEEETT----E--EEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHC--CCEEEcCCEEEEEECC----e--EEEEecccCCccccceEEEEeEEEEcCCC
Confidence            3445555554  8999999999998643    2  33332  34     457899999999884

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.28  E-value=0.00034  Score=53.80  Aligned_cols=38  Identities=26%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      |.|...+|.|||+|..|.++|..|+..|+ +++++|+.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            65555789999999999999999999999 999999873

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.27  E-value=0.00036  Score=53.44  Aligned_cols=34  Identities=21%  Similarity=0.481  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.22  E-value=0.00038  Score=54.04  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      +..+|+|||+|..|.++|..|++.|+ +|+++|+++.
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34589999999999999999999998 9999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.21  E-value=0.00036  Score=53.47  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            58999999999999999999999999999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.19  E-value=0.00045  Score=53.37  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|..|.++|..|++.|.+|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            379999999999999999999999999999865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.15  E-value=0.00052  Score=53.37  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |++  .+|.|||+|..|.++|..|++.|++|++++|.
T Consensus         1 M~~--mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            1 MSL--TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             -CC--CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCC--CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            543  47999999999999999999999999999985

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.13  E-value=0.00052  Score=56.01  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|...+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            554446899999999999999999999999999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.10  E-value=0.0036  Score=49.89  Aligned_cols=47  Identities=15%  Similarity=0.047  Sum_probs=35.7

Q ss_pred             HHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609          110 LLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus       110 l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                      +.+.|.+.  +++++.+++|+++..+     .   |.+.+|+++.+|.||.|.|...
T Consensus       224 ~~~~l~~~--gV~~~~~~~v~~i~~~-----~---v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          224 VASIYNQL--GIKLVHNFKIKEIREH-----E---IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHH--TCEEECSCCEEEECSS-----E---EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHC--CCEEEcCCceEEECCC-----e---EEECCCCEEeeeEEEECCCCCc
Confidence            33444443  8999999999998532     1   5678899999999999999754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.10  E-value=0.0063  Score=49.99  Aligned_cols=35  Identities=9%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      ++|+|||+|.+|.-++..|+++  +.+|+++=|.+..
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            4799999999999999999875  6799999887643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.07  E-value=0.00052  Score=52.80  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|.++|..|++.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            369999999999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.07  E-value=0.0007  Score=47.68  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL-GIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~   38 (232)
                      ..|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.04  E-value=0.00082  Score=50.93  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.03  E-value=0.00071  Score=52.19  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      |.+ ..+|.|||+|..|.++|..|++.|+ +|+++|+++.
T Consensus         1 M~~-~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            1 MIE-RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCC-CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCC-CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            553 3589999999999999999999998 9999998763

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.02  E-value=0.00079  Score=54.58  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|.|||.|.+|+++|..|+++|++|++.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3689999999999999999999999999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.01  E-value=0.002  Score=53.53  Aligned_cols=35  Identities=17%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|+|||+|.+|+-+|..|++.+.+|++++|.+..
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            58999999999999999999999999999987654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.99  E-value=0.00058  Score=49.59  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            499999999999999999999999999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.96  E-value=0.00071  Score=51.57  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|-.|.++|..|++.|.+|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            369999999999999999999999999999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.92  E-value=0.0011  Score=50.78  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|.|||.|..|..+|..|++.|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.91  E-value=0.0011  Score=51.07  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +..+|+|||+|-.|.++|..|+..++  ++.++|.+..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChH
Confidence            34789999999999999999999988  8999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.88  E-value=0.0011  Score=53.58  Aligned_cols=34  Identities=24%  Similarity=0.537  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            3799999999999999999999999999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.86  E-value=0.0011  Score=51.18  Aligned_cols=38  Identities=34%  Similarity=0.511  Sum_probs=32.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      |.+...+|.|||+|..|.++|..|+..|+  +++++|...
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            65555789999999999999999999887  899999754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.85  E-value=0.00075  Score=51.89  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhC-----C-CcEEEEec
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRL-----G-IKALVLEK   36 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~-----g-~~v~viE~   36 (232)
                      |+.+..+|.|||+|..|.++|..|++.     | ++|++++|
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            444446899999999999999999998     9 99999987

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.84  E-value=0.0017  Score=46.89  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.84  E-value=0.00047  Score=56.01  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..+|+|+|+|-.|..+|..|...|++|++||+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            34799999999999999999999999999999863

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.83  E-value=0.0013  Score=50.38  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|..+|..|++.|++|+++++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.83  E-value=0.0016  Score=49.37  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|++.|++|++++|++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            599999999999999999999999999998764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.83  E-value=0.0016  Score=50.38  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|++.|+ +|+++|.++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            579999999999999999999999 9999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.83  E-value=0.00098  Score=50.86  Aligned_cols=36  Identities=17%  Similarity=0.081  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|.|||.|..|..+|..|++.|++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            358999999999999999999999999999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.82  E-value=0.0014  Score=50.84  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |+.+|.|||+|..|.++|..|++.|++|++++|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            34689999999999999999999999999999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.80  E-value=0.0015  Score=49.70  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +..|.|||+|..|...|..|+ .|++|+++|+.+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            478999999999999999999 9999999998753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.80  E-value=0.0019  Score=49.72  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +..+|.|||+|..|.++|..|.+.|+  +|.++++++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            33689999999999999999999999  999999865

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.79  E-value=0.0013  Score=47.75  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ...|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999975

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.79  E-value=0.015  Score=44.32  Aligned_cols=33  Identities=9%  Similarity=0.170  Sum_probs=25.4

Q ss_pred             ccEEEECCCHH-HHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIA-GLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~-G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+++|||||.. ++.+|..+.+.+.+|+++++.+
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            46888888864 5777888877889999987654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.00088  Score=51.66  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      ..+|.|||.|..|..+|..|++.| ++|+++++.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357999999999999999999999 9999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.77  E-value=0.0017  Score=50.09  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|+|||+|..|.++|..|++.|+  +|+++|+++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            579999999999999999999998  999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.74  E-value=0.00085  Score=52.80  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|++.|++|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.72  E-value=0.0022  Score=49.12  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.71  E-value=0.0019  Score=50.58  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|++.|++|+++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.71  E-value=0.0023  Score=49.24  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.70  E-value=0.0018  Score=52.79  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            5899999999999999999999999999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.70  E-value=0.0019  Score=49.56  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|||+|-.|.++|..|+ .|.+|++++|.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            36999999999999999999 999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.66  E-value=0.0027  Score=49.03  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|+..|+ +|.++|.++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            479999999999999999999998 9999998753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.66  E-value=0.0011  Score=48.30  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEE-EecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALV-LEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~v-iE~~~~   39 (232)
                      .+|.|||+|..|.++|..|++.|++|++ ++|++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            4799999999999999999999999998 887654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.65  E-value=0.002  Score=52.34  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL-GI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~-g~-~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|+++ |+ +|+++|+++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.62  E-value=0.0028  Score=46.88  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..+|.|||+|..|.++|..|++.|++|++++|.+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            36899999999999999999999999999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.61  E-value=0.0026  Score=51.36  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .++.|||.|..|+.+|..|++.|++|+++|+++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            68999999999999999999999999999998764

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.61  E-value=0.002  Score=51.98  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ...|.|||.|.+|+++|..|+++|++|++.|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999987644

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.61  E-value=0.0029  Score=48.78  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|+..|+ +++++|..+.
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            479999999999999999999999 9999998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.59  E-value=0.0027  Score=51.30  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999998765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.55  E-value=0.0013  Score=49.37  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|||||.+|...|..|.+.|.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999999999999999999999754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.54  E-value=0.0028  Score=51.52  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.52  E-value=0.0026  Score=50.88  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +..|+|||+|..|..+|..|.+.|++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            34699999999999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.52  E-value=0.0033  Score=49.83  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|.+|+.+|..+...|.+|+++|+.+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5899999999999999999999999999998864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.52  E-value=0.0038  Score=48.12  Aligned_cols=34  Identities=18%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|+..++ ++.++|..+.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            579999999999999999999988 9999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.50  E-value=0.0032  Score=48.18  Aligned_cols=32  Identities=25%  Similarity=0.508  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|+|||+|..|.++|..|+.+|+  +|.++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            59999999999999999999998  999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.50  E-value=0.0036  Score=48.01  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|+..|+ +|.++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            379999999999999999999997 999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.48  E-value=0.0025  Score=49.01  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|.|||.|..|..+|..|++.|+ +|+++++.+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            579999999999999999999999 999999963

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.48  E-value=0.0027  Score=47.15  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999998 899999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.47  E-value=0.0046  Score=46.64  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+++  .|+|.|+|..|..++..|.++|++|+++.|...
T Consensus         1 M~~~--~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            1 MSLS--KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             -CCC--CEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCCC--cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5544  699999999999999999999999999998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.46  E-value=0.0033  Score=51.31  Aligned_cols=36  Identities=14%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+.+|.|||+|..|..+|..|+++|++|++++|.+.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            346899999999999999999999999999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.45  E-value=0.0044  Score=46.85  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI---KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~---~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|.+.|+   +|.++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            579999999999999999999998   9999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.43  E-value=0.004  Score=48.42  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|.|||.|..|.++|..|.+.|++|.++++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.42  E-value=0.0046  Score=46.80  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+ |..|..+|..|++.|++|+++++.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.41  E-value=0.00094  Score=48.83  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.....+|.|||+|..|.++|..|++.|++|+.+++..
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~   39 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE   39 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH
Confidence            33344589999999999999999999999999999853

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.004  Score=50.99  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |..+|.|||.|..|..+|..|+++|++|++++|.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.40  E-value=0.0037  Score=47.34  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|.|||+|..|..+|..|++.|++|+++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEK   36 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            6999999999999999999999999999997643

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.39  E-value=0.0045  Score=47.52  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.38  E-value=0.0041  Score=47.91  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|.++|..|++.|++|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            57999999999999999999999999999 653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.37  E-value=0.013  Score=47.98  Aligned_cols=58  Identities=12%  Similarity=0.013  Sum_probs=43.4

Q ss_pred             HHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh--hhhhhcCC
Q 044609          112 EALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM--VAQWLGLS  175 (232)
Q Consensus       112 ~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~--~r~~~~~~  175 (232)
                      +.+.+.  |++++.+++|+++..+   +.. ..+.+.+|+++.||.||.|.|..+.  +.+.++..
T Consensus       265 ~~l~~~--GV~v~~~~~v~~i~~~---~~v-~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          265 QELERW--GIDYVHIPNVKRVEGN---EKV-ERVIDMNNHEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHH--TCEEEECSSEEEEECS---SSC-CEEEETTCCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhC--CcEEEeCCeeEEEecC---Cce-EEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            444443  8999999999999864   233 5567888989999999999998864  44555543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.35  E-value=0.0028  Score=48.36  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |..+|-+||-|..|..+|..|.++|++|++++|.+..
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~   40 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK   40 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            3457999999999999999999999999999987653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.34  E-value=0.004  Score=49.90  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|++ |++|+++|+++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            479999999999999999998 999999998754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.34  E-value=0.0046  Score=48.44  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.34  E-value=0.0041  Score=46.38  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG----IKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g----~~v~viE~~~~~   40 (232)
                      .+|.|||+|..|.++|..|++.|    .+|.++++.+..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            47999999999999999999999    699999987654

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.32  E-value=0.0044  Score=47.72  Aligned_cols=38  Identities=32%  Similarity=0.545  Sum_probs=32.1

Q ss_pred             CCccc-ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            1 MEMVE-EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         1 m~~~~-~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      |+.+. .+|+|||+|..|.++|..|+.+++  ++.++|.++
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            55433 589999999999999999998875  799999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.32  E-value=0.0016  Score=43.91  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|||+|..|..+|..|.+.|.+|+++++.+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            579999999999999999999999999999865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.32  E-value=0.0051  Score=47.19  Aligned_cols=33  Identities=30%  Similarity=0.513  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~   39 (232)
                      +|+|||+|..|.++|..|++.  |.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            599999999999999999985  789999999764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.31  E-value=0.0047  Score=47.66  Aligned_cols=34  Identities=26%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG----IKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g----~~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|.+.|    ++|++++|.+.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            47999999999999999999999    79999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.29  E-value=0.0037  Score=50.40  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|+.+|..|++.|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999865

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.28  E-value=0.0041  Score=47.35  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|++.|++|.++++.+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.27  E-value=0.0043  Score=47.78  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +..+|+|||+|..|.++|..|+.+++  ++.++|.++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            44689999999999999999998885  799999753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.27  E-value=0.0065  Score=43.95  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|++.|++|.+++|+.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.26  E-value=0.0065  Score=46.31  Aligned_cols=34  Identities=32%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.||| +|..|.++|..|++.|++|.++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3799999 999999999999999999999998653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.25  E-value=0.0059  Score=49.75  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.25  E-value=0.0025  Score=49.84  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG-------IKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g-------~~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|++.|       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999998       89999998765

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.0083  Score=48.70  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+++|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            358999999999999999999999999999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.23  E-value=0.0039  Score=49.01  Aligned_cols=34  Identities=26%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|||+|.+|+.+|..|...|.+|+++|+.+.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.23  E-value=0.0036  Score=47.43  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|.|||.|..|..+|..|++.|++|+++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAK   36 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            6999999999999999999999999999987653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.21  E-value=0.005  Score=46.90  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |. +..+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus         1 M~-~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            1 ME-KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             ----CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CC-CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            44 335799999999999999999999999999998653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.20  E-value=0.0047  Score=49.64  Aligned_cols=34  Identities=21%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||.|-.|+.+|..|+++|++|+.+|-++.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            4799999999999999999999999999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.16  E-value=0.0058  Score=47.13  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.13  E-value=0.0049  Score=47.69  Aligned_cols=30  Identities=33%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|.|||+|..|..+|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            599999999999999999999999999998

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.11  E-value=0.0046  Score=50.34  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|++.  |++|+++|+++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            4799999999999999999998  899999998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.11  E-value=0.0086  Score=46.94  Aligned_cols=33  Identities=18%  Similarity=0.525  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|+|+|||..|..+|..+.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            699999999999999999999999999998764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.10  E-value=0.0083  Score=44.36  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC----cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI----KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~----~v~viE~~~~   39 (232)
                      .+|.|||+|..|.++|..|.+.|+    +|.+++|++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            369999999999999999999998    9999998753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.08  E-value=0.0082  Score=46.40  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLA-TAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~-~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||.|.+|++ +|..|.++|++|.+.|+...
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            37999999999996 89999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.06  E-value=0.011  Score=49.41  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=41.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcc-eeeeecccHHHHHHHcCCh
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATG-AALTLSPNAWLALDALGVS   63 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~-~~~~~~~~~~~~l~~~g~~   63 (232)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++.....- ..+.-.....+.|++.|+.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~  407 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGID  407 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCcc
Confidence            479999999999999999999999999999998653221 1122222334556666543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.04  E-value=0.0059  Score=47.04  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|++.|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            59999999999999999999998  999999864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.03  E-value=0.0086  Score=48.81  Aligned_cols=33  Identities=12%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|++.|++|.+++|.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            579999999999999999999999999999864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.02  E-value=0.0068  Score=45.95  Aligned_cols=35  Identities=37%  Similarity=0.456  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4689999999999999999999998 7899998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.01  E-value=0.0072  Score=48.14  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|.+|+.+|..+...|.+|+++|+.+.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.99  E-value=0.0058  Score=48.23  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-------IKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-------~~v~viE~~~~   39 (232)
                      +|.|||+|..|.++|..|++.|       ++|+++++.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.99  E-value=0.0087  Score=47.38  Aligned_cols=34  Identities=26%  Similarity=0.547  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|.+|+.+|..+...|.+|+++|+.+.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.98  E-value=0.0085  Score=46.32  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3689999999999999999999998 788999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.96  E-value=0.0099  Score=42.70  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+|+| +|-.|..+|..|++.|++|.+++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            599999 99999999999999999999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.96  E-value=0.0093  Score=44.88  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|.+.|++|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.94  E-value=0.008  Score=47.24  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +.+|+|+|||.+|..+|..|...|. +|.++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999999 999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.93  E-value=0.0096  Score=46.71  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|.+|+.++..|...|.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.92  E-value=0.01  Score=48.55  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|++.|++|.+++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.92  E-value=0.0068  Score=46.92  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCC-------cEEEEecC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGI-------KALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~-------~v~viE~~   37 (232)
                      |.++..+|+|+|| |..|.+++..|..+|+       ++.++|..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            6544578999998 9999999999999886       79999876

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.92  E-value=0.0065  Score=48.43  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|+.+|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            59999999999999999999 99999999865

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.91  E-value=0.0076  Score=45.83  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|++.|+  ++.++|+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            59999999999999999999988  899999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.90  E-value=0.011  Score=48.04  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~   40 (232)
                      .+|+|||||.+|+-+|..+.+.|. +|+++++.+..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            589999999999999999999998 59999987654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.90  E-value=0.0081  Score=51.58  Aligned_cols=34  Identities=29%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            3699999999999999999999999999998753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.89  E-value=0.013  Score=43.96  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|+|+|-+|.++|..|++.|.+|++++|..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.86  E-value=0.013  Score=43.86  Aligned_cols=34  Identities=32%  Similarity=0.551  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..++|+|+|-+|.++|..|++.|.+|+|+.|...
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.85  E-value=0.0092  Score=45.81  Aligned_cols=33  Identities=30%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+|..|.++|..|+..++  ++.++|..+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            59999999999999999999887  8999998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.85  E-value=0.0083  Score=45.46  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~   38 (232)
                      .+|.|||+|..|.++|..|++.  +.+|.++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999987  67899998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.83  E-value=0.014  Score=47.62  Aligned_cols=35  Identities=31%  Similarity=0.603  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            58999999999999999999999999999998754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.82  E-value=0.0099  Score=45.12  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|++.|++|.++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            599999999999999999999999999998754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.82  E-value=0.0091  Score=44.33  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3689999999999999999999998 788999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.81  E-value=0.0085  Score=45.95  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG--IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~   38 (232)
                      +|.|||+|-.|.++|..|+++|  .+|+++|+++
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6899999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.81  E-value=0.0062  Score=48.53  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHh-CCCcEEEEe
Q 044609            7 DVVIIGAGIAGLATAVALRR-LGIKALVLE   35 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~-~g~~v~viE   35 (232)
                      +|.|||+|..|.++|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            69999999999999999998 599999999

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.80  E-value=0.0099  Score=45.87  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|+|||+|..|.++|..|+..++  ++.++|...
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            589999999999999999999887  899999854

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.80  E-value=0.011  Score=48.04  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|||+|.+|...|..|.+.|.+|+++++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            4689999999999999999999999999999854

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.79  E-value=0.0072  Score=49.35  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~   39 (232)
                      .+|.|||+|..|+.+|..|++.  |++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            4799999999999999999998  799999998653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.78  E-value=0.013  Score=44.06  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .|.|||+|..|.++|..|++.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.77  E-value=0.011  Score=46.31  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~   37 (232)
                      .+.+|+|+|||-+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34689999999999999999999998 79999997

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.76  E-value=0.0097  Score=44.32  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      +|.|||+|..|..+|..|++.| ++|.++++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4999999999999999999999 9999999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.76  E-value=0.0095  Score=45.52  Aligned_cols=34  Identities=29%  Similarity=0.670  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      .+|.|||+|..|..+|..|+.+|+  ++.++|.++.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            579999999999999999999998  9999998763

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.73  E-value=0.018  Score=45.45  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|+|+|..|..++..+.+.|++|.+++..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36899999999999999999999999999997654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.72  E-value=0.0099  Score=43.07  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |++| ..|+|.|| |..|..++..|.++|++|.++.|.+.
T Consensus         1 M~~m-~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKV-KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CC-CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCC-CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            5533 47999996 99999999999999999999999754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.71  E-value=0.0044  Score=45.39  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3579999999999999999999999 999998764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.69  E-value=0.012  Score=45.41  Aligned_cols=33  Identities=12%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|.|||+|..|.++|..|+.+|+  ++.++|...
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            589999999999999999999987  899999854

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.69  E-value=0.012  Score=43.99  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      .+|.|||+|-.|..+|..|++.|++ |.++++.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999998 88998764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.68  E-value=0.014  Score=45.97  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|..|..+|..|+..|.+|+++++.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999865

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.67  E-value=0.016  Score=45.05  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|+|||+ |-.|.++|+.|+.+|+  +++++|...
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            57999998 9999999999999885  899999764

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=95.66  E-value=0.036  Score=45.00  Aligned_cols=38  Identities=37%  Similarity=0.691  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~   41 (232)
                      ..+||+|||||++|+++|+.|++.|+ +|+|+|+.+.++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            46899999999999999999999999 899999987654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.66  E-value=0.014  Score=47.66  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|..+|..|++.|++|++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.66  E-value=0.017  Score=43.99  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|+|+|.+|.++|..|++.|. +|+++.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.65  E-value=0.011  Score=47.49  Aligned_cols=34  Identities=21%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+..|||.|..|+.+|..|+++|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999999999999999864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.65  E-value=0.012  Score=45.33  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      ..+|+|||+|..|.++|+.|+..++  ++.++|...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3689999999999999999998876  899999854

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.65  E-value=0.016  Score=44.74  Aligned_cols=33  Identities=15%  Similarity=0.458  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|.|||+|..|.++|+.|+.+|+  ++.++|...
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            589999999999999999999987  899999764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.64  E-value=0.018  Score=40.81  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|.|| |-.|..++..|.++|++|.++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            47999999 99999999999999999999998754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.63  E-value=0.02  Score=45.28  Aligned_cols=34  Identities=32%  Similarity=0.520  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|+|+|..|..+|..+.+.|++|.+++..+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            5899999999999999999999999999997653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.63  E-value=0.012  Score=44.35  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|.|||..|..++..|.++|++|+++.|.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            4799999999999999999999999999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.62  E-value=0.019  Score=46.00  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ....|+|+|+|..|..++..+.+.|++|.+++..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            346899999999999999999999999999987643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.62  E-value=0.018  Score=46.77  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|+|+|..|..+|..|++.|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3679999999999999999999999999999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.62  E-value=0.01  Score=50.95  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4699999999999999999999999999998753

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.61  E-value=0.012  Score=44.50  Aligned_cols=32  Identities=31%  Similarity=0.404  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|++ |++|+++++.+.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            59999999999999999999 999999998653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.57  E-value=0.018  Score=44.70  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            4699999999999999999999999999998653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.55  E-value=0.017  Score=45.66  Aligned_cols=34  Identities=38%  Similarity=0.517  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|+|+|..|..+|..+...|.+|+++|+.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.51  E-value=0.013  Score=45.79  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            3689999999999999999999998 7899998753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.47  E-value=0.02  Score=41.78  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|.|| |-.|..++..|.++|++|+++.|.+.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            357999998 99999999999999999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.42  E-value=0.018  Score=43.31  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|-+|.++|..|++.|.+|+++.|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999874

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.37  E-value=0.018  Score=44.14  Aligned_cols=33  Identities=39%  Similarity=0.629  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      +|.|||+|..|.++|..|+..++ ++.++|....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~   34 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPG   34 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChh
Confidence            48999999999999999998888 6999998753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.33  E-value=0.017  Score=43.05  Aligned_cols=30  Identities=27%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|.|||+|..|..+|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            599999999999999999999999999876

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.32  E-value=0.019  Score=43.19  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...++|+|+|-+|.++|..|++.|. +|+++.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            3579999999999999999999998 8999998754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.31  E-value=0.026  Score=41.92  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .++|+|+|-+|.+++..|.+.|. +|++++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 899999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.30  E-value=0.018  Score=43.38  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|||+|-+|.++|..|.+.|.+|++++|..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.29  E-value=0.018  Score=49.46  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..+++.|++|+++|..+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            5899999999999999999999999999998754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.28  E-value=0.022  Score=47.47  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ...|+|||+|-.|+.+|..|++.|+ +++|+|.+.-
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3689999999999999999999998 7899998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.28  E-value=0.029  Score=42.56  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|.|||+|..|..+|..|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.27  E-value=0.031  Score=42.60  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|.|||+|..|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.18  E-value=0.021  Score=47.43  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       328 ~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~  361 (598)
T 3vh1_A          328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  361 (598)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            689999999999999999999998 789999774

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.15  E-value=0.032  Score=40.01  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .|+|.|| |-.|..++..|.++|++|.++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4999996 9999999999999999999999875

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=95.15  E-value=0.033  Score=44.02  Aligned_cols=39  Identities=21%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |..+...|+|+|+|..|...+..+.+.|++|.+++..+.
T Consensus         7 m~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            444557899999999999999999999999999997643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.14  E-value=0.041  Score=39.64  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHH-hCCCcEEEEecCCC
Q 044609            6 EDVVIIGA-GIAGLATAVALR-RLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~-~~g~~v~viE~~~~   39 (232)
                      ..|+|.|| |-.|..+|..|+ +.|++|+++.|++.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            35999995 999999999999 89999999998754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.11  E-value=0.019  Score=44.54  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +...|+|.|| |..|..++..|.++|++|.++.|...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3468999996 99999999999999999999998654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.09  E-value=0.03  Score=41.76  Aligned_cols=32  Identities=38%  Similarity=0.597  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .|+|||+|-+|.++|..|.+.|.+|++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.09  E-value=0.023  Score=42.21  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|.|||+|..|..+|..|.+.|.+|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            379999999999999999999999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.08  E-value=0.032  Score=42.54  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|.|| |..|..++..|.++|++|+++.|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999999 99999999999999999999998765

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.07  E-value=0.025  Score=43.63  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +.+|+|||+|..|.++|+.|+..++  ++.++|...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            4689999999999999999998876  799999854

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.04  E-value=0.035  Score=42.57  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3579999999999999999999998 899999873

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=94.04  E-value=0.0039  Score=44.63  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|..+|..|.+.|.+|.+++|.+.
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            4699999999999999999999999999998754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.01  E-value=0.038  Score=41.72  Aligned_cols=34  Identities=38%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3579999999999999999999999 699998874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.01  E-value=0.018  Score=46.59  Aligned_cols=56  Identities=16%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             HHHHHHHhhhCC--CCeEEeCceEEEEEec--CCCCCccEEEEeCCCcEEEccEEEecCCCchh
Q 044609          108 QSLLEALADELP--DDTIQFSSKIAAIDSQ--TLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       108 ~~l~~~l~~~~~--~~~i~~~~~v~~i~~~--~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~  167 (232)
                      ..+.+.|.+.+.  |++++++++|++|..+  +  +.. +.|.+ +|+++.||.||.|.|.++.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~-~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT--GKF-EGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTT--TEE-EEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCC--CeE-EEEEE-CCeEEECCEEEECCCccch
Confidence            356666666553  8899999999999876  4  443 55665 5778999999999999864

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=95.00  E-value=0.028  Score=45.16  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4689999999999999999999998 799998764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.99  E-value=0.026  Score=40.31  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=32.2

Q ss_pred             CCcccccEEEEC-CCHHHHHHHHHHHhCCC--cEEEEecCCCC
Q 044609            1 MEMVEEDVVIIG-AGIAGLATAVALRRLGI--KALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG-~G~~G~~~A~~L~~~g~--~v~viE~~~~~   40 (232)
                      |+.+...|+|.| +|-.|..++..|.++|.  +|.++.|.+..
T Consensus         1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~   43 (215)
T 2a35_A            1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA   43 (215)
T ss_dssp             ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC
T ss_pred             CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc
Confidence            554556899999 59999999999999998  99999987653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.97  E-value=0.045  Score=42.42  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||.|-.|..+|..|+..|.+|+++++...
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            5799999999999999999999999999998764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.97  E-value=0.017  Score=43.72  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||+|..|..+|..|++.|++|++++ ++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            69999999999999999999999999998 543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.95  E-value=0.033  Score=42.61  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|.|| |-.|..++..|.++|++|.++.|++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            47999997 99999999999999999999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.93  E-value=0.044  Score=41.31  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...++|+|+|-+|.++|..|++.|. +|+++.|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            3579999999999999999999997 899999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.93  E-value=0.025  Score=44.02  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3689999999999999999999999 789998764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.93  E-value=0.039  Score=39.74  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+|.|| |-.|..++..|.++|++|.++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.92  E-value=0.028  Score=43.15  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCC--CcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLG--IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g--~~v~viE~~~   38 (232)
                      +|+|||| |..|.++|..|+..+  .++.++|..+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            5999998 999999999999988  5899999876

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.91  E-value=0.029  Score=42.49  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..++|+|+|-+|.++|..|++.| +|++++|..
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            57999999999999999999999 999998864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=94.89  E-value=0.056  Score=39.86  Aligned_cols=40  Identities=28%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |.+....++|.|| |-.|..+|..|+++|.+|++++|+...
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~   43 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ   43 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            4444567888886 788999999999999999999987653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.87  E-value=0.05  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...|+|.|| |-.|..+|..|+++|.+|+++.|+.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999998 7999999999999999999998864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.85  E-value=0.028  Score=44.82  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|.|..|..+|..|...|.+|+++|+++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            589999999999999999999999999999864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.85  E-value=0.047  Score=41.26  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...++|+| +|-+|.++|..|++.|.+|++++|..
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            35799999 99999999999999999999999863

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.85  E-value=0.028  Score=42.65  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|.|||+|-.|.++|+.|..+++  ++.|+|..+
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            59999999999999999998775  799999765

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.84  E-value=0.048  Score=42.54  Aligned_cols=39  Identities=18%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|....|+|.|| |-.|..++..|.++|++|.++.|++.
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   40 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   40 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            6554568999996 99999999999999999999998754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=94.83  E-value=0.033  Score=42.46  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|-+||-|..|..+|..|.+.|++|++++|.+.
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~   37 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   37 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            699999999999999999999999999998753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.82  E-value=0.041  Score=41.24  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             CCc-ccccEEEECC---CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEM-VEEDVVIIGA---GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~-~~~dV~IvG~---G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |.. ....++|.||   |-.|..+|..|+++|.+|+++.|+..
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            542 3357899998   58999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-20
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-18
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	3e-17
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-14
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-10
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	3e-10
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-10
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-10
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-10
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-09
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-09
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-09
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-08
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-08
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-08
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-08
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	2e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-08
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	4e-08
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	4e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-08
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	5e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	5e-08
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	6e-08
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-07
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	6e-07
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-06
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-06
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	3e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-06
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	3e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-06
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-06
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-06
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	6e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	6e-06
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	7e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	7e-06
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	1e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	2e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	5e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	9e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	1e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	2e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	5e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	6e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	7e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.001
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.002
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.002
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	0.002
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	0.004
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.004

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 85.8 bits (211), Expect = 1e-20
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 4/168 (2%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA--ALTLSPNAWLALDALGVSH 64
            V IIGAG +GL     L + GI  ++LE+       G   A  L       L   GV  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQ 124
           ++       + V +   G     +L        +    ++   + L+EA        T  
Sbjct: 64  RMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREA--CGATTV 121

Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172
           + +    +               G+   +    + GCDG H +  Q +
Sbjct: 122 YQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSI 169

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 79.0 bits (193), Expect = 3e-18
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 4/170 (2%)

Query: 7   DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHK 65
           D++I GAGI GL+ A+AL + GI K  +LE S  +R  G  + + P A  AL  LG+   
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLL---EALADELPDDT 122
           L +   P   +   +             ++G           +  +    A+ + L    
Sbjct: 63  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 122

Query: 123 IQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWL 172
           ++    +  I+ +       A    G    + A VL+G DG+HS V   L
Sbjct: 123 VRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHL 172

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 76.3 bits (186), Expect = 3e-17
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 6   EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG-LRATGAALTLSPNAWLALDALGVSH 64
           + + ++G  I+GL  A+ LR  G+   V E+S   L   G  + + P     L   GV  
Sbjct: 5   DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64

Query: 65  KLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQ 124
              SV + +        G           + G + +  R     S+   L +    +   
Sbjct: 65  DSISVPSSSMEYVDALTG----------ERVGSVPADWRFTSYDSIYGGLYELFGPERYH 114

Query: 125 FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQW 171
            S  +  +       S    +   D T  +A  +IG DG  S+V + 
Sbjct: 115 TSKCLVGLSQD----SETVQMRFSDGTKAEANWVIGADGGASVVRKR 157

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 69.4 bits (168), Expect = 2e-14
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 24/175 (13%)

Query: 7   DVVIIGAGIAGLATAVAL-----RRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALG 61
           DV+I+GAG AGL  A  L     ++  +K  +++K       G A  L      +L  LG
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 62  VSHKLTSVYAPAKRVFVTNLGTGATQELSY---AGKSGRIGSGLRSVHRQSLLEALADEL 118
           ++ K+ S       + + N         +        G        +H+  +   + D +
Sbjct: 69  LADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSI 128

Query: 119 PDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVAQWLG 173
            + +         +  +                 ++       D     V   L 
Sbjct: 129 AEISDTRIKVERPLIPEK----------------MEIDSSKAEDPEAYPVTMTLR 167

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR-ATGAA 46
          M++   D ++IG G+AGL  AVA ++ G+  +VL      R  + AA
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAA 47

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 56.8 bits (136), Expect = 3e-10
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DV+++GAG +GL     LR LG    V+E +  +
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 2  EMVEE-DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPN 52
           M EE DV+++G G+     +  +   G K L ++++      G + +++P 
Sbjct: 2  HMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP--YYGGESSSITPL 51

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 56.3 bits (134), Expect = 4e-10
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DV+++GAG  G+A    L + G+K L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 55.9 bits (133), Expect = 4e-10
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAA 46
          + V+IG GI G A A  L +      + E    G R T AA
Sbjct: 6  EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAA 46

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 3  MVEE-DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLS 50
          +  + DV+++G GI     +  L   G K L ++K D     G A +++
Sbjct: 2  IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD--HYGGEAASVT 48

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVSHK 65
           DV++IG G +GL  A+     G   L+L+K + L R    +     N    L    +   
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 66  LTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLR----SVHRQSLLEALADELPDD 121
           +          F               G   +     R    S   QS+++AL   L D 
Sbjct: 64  IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123

Query: 122 TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSMVA 169
            ++  +       +  NG + A+I L    +++   ++   G  S+  
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVI-LQTGEVLETNHVVIAVGGKSVPQ 170

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          D +I+G+G+ G   A  L++L  K LV+EK + +
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 53.4 bits (127), Expect = 4e-09
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWL 55
           V+++GAG AG   ++A ++ G   ++++K+              NA  
Sbjct: 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVG 69

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 6e-09
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALT 48
          DVV++G GI+G+A A  L   G+  +VLE  D  R  G   T
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYT 40

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 28/237 (11%)

Query: 1   ME-MVEE-DVVIIGAGIAGLATAVALRRL------GIKALVLEKSDGLRA---TGAALTL 49
           ME   EE DVVI+GAG AGL+ A  L++L       ++  ++EK+  + A   +GA L  
Sbjct: 26  MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDP 85

Query: 50  SPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQS 109
                L  D       L +     +   +T         L     +      +R  H  S
Sbjct: 86  RAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVS 145

Query: 110 LLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI------------IKAKV 157
            +   A+ L  +     +    +  +  +    A  ++G                + AKV
Sbjct: 146 WMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKV 205

Query: 158 LIGCDGVHSMVAQWLGLSESINSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFI 214
            I  +G H  +A+ L     + +      G    P            + +G   GF+
Sbjct: 206 TIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIPKLTFPG-----GLLIGCSPGFM 257

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DVV++G+G AG + A++    G K +++EK   +     
Sbjct: 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAW 54
          +V ++G GI+GLA A  LR  G  A++LE S   R  GA  T +   +
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA--RLGGAVGTHALAGY 47

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAW 54
           VVI+GAG+AGL+ A  L   G +  VLE S+  R  G   T      
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RPGGRVRTYRNEEA 77

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 2  EMVEEDVVIIGAGIAGLATAVAL----RRLGIKALVLEKSDGLRATGAA 46
          E+VE D++IIG G +G   A       +  G+K  ++EK+   R+   A
Sbjct: 18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVA 66

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DVVIIG+G AGLA AV+ R  G K ++LEK         
Sbjct: 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 50.7 bits (119), Expect = 3e-08
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKA-LVLEKSDGLRATGAALT 48
           V+++GAG++G++ A  L   GI   L+LE +D     G    
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATD--HIGGRMHK 42

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKA-LVLEKSDGLRATGA 45
           +VIIGAGI G   A  L   G     VL++       G+
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          ++I+GAG +G      L   G +  ++++ D
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 8/163 (4%)

Query: 7   DVVIIGAGIAGLATAVALRRLGIKALVLEKSD----GLRATGAALTLSPNAWLALDALGV 62
           + +IIGAG AGL  A  L +LG    V +        +  +G       N  +       
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 63  SHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDT 122
            +      A A+      +   A Q ++Y  K    G        + ++E L  E     
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKEL--GQLFCDEGAEQIVEMLKSECDKYG 123

Query: 123 IQ--FSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG 163
            +    S+++ ++    +     ++ +  +      +++   G
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGG 166

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA-TGAA 46
          M+  + D+ I+GAG AGL  A+A  +     K  ++ K   +R+ T AA
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAA 49

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 5e-08
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTL 49
           V+IIG+G++GLA A  L+  G+   +LE  D  R  G   T 
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATF 47

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (119), Expect = 6e-08
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA-TGAA 46
          + + E D V+IGAG AG+  A+ + + G    +L K    R+ T +A
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSA 49

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALT 48
          V +IGAG++GLA A  L+  G+   V E     +A G   +
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--KAGGKLRS 42

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 8  VVIIGAGIAGLATAVALRRLGI--KALVLEKSDGL 40
          + IIGAG +GL TA AL       +  + E+    
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 41

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG 39
          DV+I+G+G AG A A+   R GI+  ++ +  G
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVV++G G  G + A A    G+K  ++E+   L
Sbjct: 8  DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD-GLRATGAA 46
          M   ++ VV++G+G+ GL++A+ L R G    +L +      ++   
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTF 48

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          D++IIG G  GLA A    +   K +VL+   
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          D+++IG G  G+A A    R   K  ++EKS
Sbjct: 3  DLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA 45
          DV++IGAG  G   A+   +LG+K  ++EK  G     A
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 1   MEMVEEDVVIIGAGIAGLATAVAL-RRLGIKALVLEKSDGLRATGA-------ALTLSPN 52
           +   E DVV++GAG AGL+ A  + +   ++  ++E+S               A+ +   
Sbjct: 29  ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP 88

Query: 53  AWLALDALGVSHK 65
           A L LD +GV++ 
Sbjct: 89  AHLFLDEIGVAYD 101

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          +E     + I+G+G A    A+   R  +K L+ E 
Sbjct: 1  LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG 36

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVVIIG G  G   A+   +LG K   +EK   L
Sbjct: 5  DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 5  EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT 43
          E D + IG G AG   +  LR +G + L++++   L  +
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 4  VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          +E + +++GAG  G   A+   +LG K  ++EK +
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAA 46
          DV+IIG+G AGL+ A+ L     + +VL K      +   
Sbjct: 9  DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFY 47

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          D + IG G  G+A+       G K  ++E 
Sbjct: 4  DYIAIGGGSGGIASINRAAMYGQKCALIEA 33

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 3  MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
          +   D ++IG G  GLA+A     LG +A V+E  
Sbjct: 1  VASYDYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 2  EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEK 36
          + ++  ++IIG G  G   A+   +LGI  +++E 
Sbjct: 2  QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKS 37
           V+I+GAG +G  TA  L + G++  +L +S
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 7e-06
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL 40
          DVVIIG G AG   A+   +LG     +EK   L
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNA 53
          VV+IGAG+ GL+TA+ +       L               T +  A
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVA 48

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKA-LVLEKSD 38
          + ++GAG A ++ A  L RLG     + EK +
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQE 38

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 6  EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD 38
          ++VVI+G G+AG+  A  LR  G +  +    D
Sbjct: 4  DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 13/78 (16%), Positives = 22/78 (28%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
            ++IG+G  G   A+ L + GI   ++E        G+   +                 
Sbjct: 9  PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADK 68

Query: 67 TSVYAPAKRVFVTNLGTG 84
          T         F  N    
Sbjct: 69 TDQPVSNFMGFGINKSID 86

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 5  EEDVVIIGAGIAGLATAVAL--RRLGIKALVLEKSD 38
            DV+I+GAG +GL+ A  +   R  +K  ++E S 
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 85

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKL 66
          VV++GAG+A ++    LR+ G + L+    D          LS +     DA  +    
Sbjct: 6  VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDC 64

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 1  MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLE 35
          M++ + DVVI+G+G  G   A  L   G K  + +
Sbjct: 1  MDI-KYDVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEK 36
           ++I+G+G AG   AV   R  ++ +++  
Sbjct: 7  KLLILGSGPAGYTAAVYAARANLQPVLITG 36

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALD 58
            V+IG G     +A+ L   G++ L+LE        G    +         
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDK 55

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDA 59
            ++IG G A  A A ++R     A VL  S+          LS   W + D 
Sbjct: 6  PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDP 58

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKA--LVLEKSDGLR 41
          V+++G+   G      L  L   A     EK D + 
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 8  VVIIGAGIAGLATAVALRR--LGIKALVLEKSD 38
          + ++G+G AG  TA  L +        + EK  
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL 36

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 7/38 (18%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKAL-------VLEKSD 38
          + I+G+G +    A +L +             +LE   
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 8  VVIIGAGIAGLATAVALRRLGIKA--LVLEKSD 38
          VV++G G  G   A  ++         ++E + 
Sbjct: 5  VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38
          D+V+IGAG  GL        L  K   V++   
Sbjct: 5  DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD 38
          D+V+IGAG  GL  A     L  K   V++   
Sbjct: 5  DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 1  MEMVEE-DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWL 55
          +E+    D VI+G G +G   A     L    K LVLE+  G   T     L+ + ++
Sbjct: 21 LELEGSYDYVIVGGGTSGCPLA---ATLSEKYKVLVLER--GSLPTAYPNVLTADGFV 73

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKALVLE 35
          D +I+GAG  G+  A  L   G K L+LE
Sbjct: 4  DYIIVGAGPGGIIAADRLSEAGKKVLLLE 32

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 7  DVVIIGAGIAGLATAVALRRLGIKAL---VLEKSD 38
           +VI+G G AG   A+       +     V++   
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.92
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.91
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.89
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.83
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.81
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.8
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.76
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.75
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.68
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.66
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.64
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.62
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.62
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.58
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.57
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.56
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.54
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.53
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.53
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.51
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.46
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.43
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.42
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.4
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.38
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.38
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.35
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.33
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.31
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.31
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.3
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.27
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.27
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.25
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.24
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.23
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.23
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.22
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.22
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.22
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.18
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.16
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.15
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.15
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.14
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.11
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.1
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.09
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.08
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.07
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.06
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.05
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.05
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.05
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.02
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.01
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.01
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.0
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.99
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.92
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.92
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.9
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.89
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.83
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.83
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.8
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.77
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.77
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.71
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.71
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.68
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.63
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.59
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.58
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.57
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.48
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.43
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.37
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.34
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.31
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.14
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.98
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.92
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.85
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.75
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.61
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.6
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.58
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.56
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.52
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.46
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.42
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.36
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.36
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.3
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.28
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.25
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.25
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.17
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.09
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.05
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.02
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.94
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.94
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.91
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.9
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.85
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.79
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.79
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.78
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.76
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.72
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.68
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.68
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.68
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.66
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.64
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.56
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.55
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.55
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.53
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.51
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.49
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.44
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.43
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.36
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.18
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.15
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.04
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.95
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.89
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.82
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.82
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.81
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.75
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.66
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.61
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.57
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.55
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.52
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.4
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.3
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.28
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.18
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.06
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.83
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.76
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.69
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.69
d2voua2	128	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.67
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.45
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.43
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.21
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.16
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.99
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.99
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.92
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.84
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.52
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.36
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.34
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.26
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.12
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.05
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.99
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.97
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.97
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.89
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.85
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.8
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.8
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.56
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.43
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.2
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.19
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.12
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.88
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.7
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.64
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.56
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.53
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.52
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	91.51
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.29
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.27
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.21
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.97
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.89
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.81
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.8
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	90.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.68
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.64
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.54
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.42
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.35
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.09
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.07
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.06
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.05
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.94
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.9
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.84
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.63
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	89.53
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	89.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.46
d3c96a2	111	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	89.34
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.23
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.19
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.99
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.96
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.88
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.79
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.78
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.69
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.69
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	88.46
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.43
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.42
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.27
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.09
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.06
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.03
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.85
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.84
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	87.81
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	87.61
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.58
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.44
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.21
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.06
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.06
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	87.04
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.99
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.91
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	86.84
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.79
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.49
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.48
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.41
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.35
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.3
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	86.21
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	86.05
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.74
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.7
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	85.47
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.46
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	85.35
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.34
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.29
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	85.24
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	85.05
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	84.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	84.71
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.66
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.34
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.34
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.15
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	84.14
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.87
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	83.11
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.92
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	82.41
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.26
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.22
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.16
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.79
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	81.34
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	81.03
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	80.77
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	80.43
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.33

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=6.2e-25  Score=167.29  Aligned_cols=165  Identities=20%  Similarity=0.291  Sum_probs=122.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc--CcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR--ATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      |++||+||||||+||++|+.|+++|++|+||||.+...  ..+++..+.++++++|+++|+++.+.....+.....+++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            45799999999999999999999999999999987542  3456788999999999999999999888887777776652


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEe-CCCc--EEEcc
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINL-GDST--IIKAK  156 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g~--~~~a~  156 (232)
                      .  ............  ....+.+.+..+.+.|.+.+.  +..+.++..+......+  ++. +.|++ .+|+  ++.||
T Consensus        81 ~--~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~g~~~~i~a~  153 (292)
T d1k0ia1          81 G--QRRRIDLKRLSG--GKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ--GER-PYVTFERDGERLRLDCD  153 (292)
T ss_dssp             T--EEEEECHHHHHT--SCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT--SSS-CEEEEEETTEEEEEECS
T ss_pred             c--cccccccccccc--cccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeec--cCc-eEEEEecCCcEEEEEeC
Confidence            2  122222222222  344567889999999887764  45666666655555443  333 44544 4553  68899


Q ss_pred             EEEecCCCchhhhhhhcCC
Q 044609          157 VLIGCDGVHSMVAQWLGLS  175 (232)
Q Consensus       157 ~vV~A~G~~S~~r~~~~~~  175 (232)
                      +||+|||.+|.+|+.+...
T Consensus       154 ~vVgADG~~S~vR~~i~~~  172 (292)
T d1k0ia1         154 YIAGCDGFHGISRQSIPAE  172 (292)
T ss_dssp             EEEECCCTTCSTGGGSCGG
T ss_pred             EEEECCCCCCcccceeeec
Confidence            9999999999999998654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=5.8e-23  Score=155.45  Aligned_cols=164  Identities=30%  Similarity=0.462  Sum_probs=121.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .||+||||||+||++|+.|+++|+ +|+|+||.+.+...++++.+.+++++.|+++|+.+.+............++. .+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g   80 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-SG   80 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECT-TS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcC-CC
Confidence            589999999999999999999997 8999999999988899999999999999999999999887776666555543 33


Q ss_pred             ce-eEEeccCCCCCCCCceeeeehHHHHHHHh----hhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC----cEEEc
Q 044609           85 AT-QELSYAGKSGRIGSGLRSVHRQSLLEALA----DELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS----TIIKA  155 (232)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g----~~~~a  155 (232)
                      .. ...+....... ........+......+.    +...+..+.++++++.+...+   +. +.+.+.++    +++.|
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~~~a  155 (288)
T d3c96a1          81 ATVWSEPRGVEAGN-AYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERD---GR-VLIGARDGHGKPQALGA  155 (288)
T ss_dssp             CEEEEEECGGGGTC-SSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEET---TE-EEEEEEETTSCEEEEEE
T ss_pred             CEEEeccccccccc-cCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecC---Cc-EEEEEEcCCCCeEEEee
Confidence            33 33333322211 22233344444333332    223478899999999998764   33 55666554    37999


Q ss_pred             cEEEecCCCchhhhhhhcCC
Q 044609          156 KVLIGCDGVHSMVAQWLGLS  175 (232)
Q Consensus       156 ~~vV~A~G~~S~~r~~~~~~  175 (232)
                      |+||+|||.+|.+|+.+...
T Consensus       156 d~vi~ADG~~S~vr~~~~~~  175 (288)
T d3c96a1         156 DVLVGADGIHSAVRAHLHPD  175 (288)
T ss_dssp             SEEEECCCTTCHHHHHHCTT
T ss_pred             ceeeccCCccceeeeeeccc
Confidence            99999999999999988543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.89  E-value=1.5e-21  Score=146.19  Aligned_cols=155  Identities=23%  Similarity=0.306  Sum_probs=117.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-cCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL-RATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ..+|+||||||+|+++|..|+++|++|+||||.+.+ ...++++.+.+++.+.|+++|+..+....  ............
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISV--PSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCB--CCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhcc--CCCcceeEeccC
Confidence            468999999999999999999999999999998765 34578899999999999999987654332  233444444333


Q ss_pred             Cce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           84 GAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                      +.. .....         .........+...+.....+..++++++++++...+   +. +.+++.||+++++|++|+||
T Consensus        82 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-v~v~~~dG~~~~~d~~v~ad  148 (265)
T d2voua1          82 GERVGSVPA---------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS---ET-VQMRFSDGTKAEANWVIGAD  148 (265)
T ss_dssp             CCEEEEEEC---------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS---SC-EEEEETTSCEEEESEEEECC
T ss_pred             Cceeccccc---------ccccchhHHHHHHHHHhcccceeecCcEEEEEEeeC---Cc-eEEEECCCCEEEEEEEeccc
Confidence            333 22111         122344555555566555578999999999998874   44 88999999999999999999


Q ss_pred             CCchhhhhhhcC
Q 044609          163 GVHSMVAQWLGL  174 (232)
Q Consensus       163 G~~S~~r~~~~~  174 (232)
                      |.+|.+|..+..
T Consensus       149 G~~s~~r~~~~~  160 (265)
T d2voua1         149 GGASVVRKRLLG  160 (265)
T ss_dssp             CTTCHHHHHHHC
T ss_pred             cccccccccccc
Confidence            999999987743

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.83  E-value=1.5e-20  Score=139.66  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=88.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----cee--eeecccHHHHH-HHcCChHHHH----hhccC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----GAA--LTLSPNAWLAL-DALGVSHKLT----SVYAP   72 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~~~--~~~~~~~~~~l-~~~g~~~~~~----~~~~~   72 (232)
                      |+|||+||||||+|+++|+.|+++|++|+||||++.++..    +.+  ..........+ ..........    .....
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            5699999999999999999999999999999999876321    000  00001111111 1111000000    00000


Q ss_pred             ceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCC
Q 044609           73 AKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDS  150 (232)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g  150 (232)
                      .....+ ....+......   ..+  ...........+.+.|.+.++  +++++++++|+++..++  +.. ..|.++++
T Consensus        81 ~~~~~~-~~~~g~~~~~~---~~~--~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g  151 (251)
T d2i0za1          81 EDIITF-FENLGVKLKEE---DHG--RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQT-KAVILQTG  151 (251)
T ss_dssp             HHHHHH-HHHTTCCEEEC---GGG--EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTC
T ss_pred             HHHHHH-HHhcCCccccc---ccc--ceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEE-EEEEeCCC
Confidence            000000 00000000000   000  000011233556666666553  89999999999998875  454 66888999


Q ss_pred             cEEEccEEEecCCCchh
Q 044609          151 TIIKAKVLIGCDGVHSM  167 (232)
Q Consensus       151 ~~~~a~~vV~A~G~~S~  167 (232)
                      ++++||.||+|||.+|.
T Consensus       152 ~~i~a~~vI~AtGg~S~  168 (251)
T d2i0za1         152 EVLETNHVVIAVGGKSV  168 (251)
T ss_dssp             CEEECSCEEECCCCSSS
T ss_pred             CeEecCeEEEccCCccc
Confidence            99999999999999884

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.81  E-value=3.4e-20  Score=140.02  Aligned_cols=170  Identities=18%  Similarity=0.225  Sum_probs=100.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcce---eee-e----c--ccHHHH-HHHcCChHHHHhh-cc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGA---ALT-L----S--PNAWLA-LDALGVSHKLTSV-YA   71 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~---~~~-~----~--~~~~~~-l~~~g~~~~~~~~-~~   71 (232)
                      -+|||+|||||++|+++|+.|+++|++|+||||...+...+.   +.. +    .  ....+. .+...++..+.+. ..
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            369999999999999999999999999999999865532211   111 1    1  110000 0111111111111 00


Q ss_pred             Cc---ee-eEEEEcCCCc--------------e-eEEe-------ccCCC------CCCCCceeeeehHHHHHHHhhhCC
Q 044609           72 PA---KR-VFVTNLGTGA--------------T-QELS-------YAGKS------GRIGSGLRSVHRQSLLEALADELP  119 (232)
Q Consensus        72 ~~---~~-~~~~~~~~~~--------------~-~~~~-------~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~  119 (232)
                      ..   .+ ..........              . ..++       ++...      +.+.+....++...+...|.+.+.
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence            00   01 1111110000              0 0010       00000      111234457888899999988764


Q ss_pred             --CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCc
Q 044609          120 --DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESI  178 (232)
Q Consensus       120 --~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~  178 (232)
                        |++++++++|.+++.++   .. +.|.+.+|. ++||.||+|+|.||. +.+.+|+..+.
T Consensus       162 ~~Gv~i~~~~~V~~i~~~~---~~-v~V~t~~g~-i~a~~VViAaG~~s~~l~~~lg~~~~~  218 (281)
T d2gf3a1         162 ARGAKVLTHTRVEDFDISP---DS-VKIETANGS-YTADKLIVSMGAWNSKLLSKLNLDIPD  218 (281)
T ss_dssp             HTTCEEECSCCEEEEEECS---SC-EEEEETTEE-EEEEEEEECCGGGHHHHGGGGTEECCT
T ss_pred             cccccccCCcEEEEEEEEC---CE-EEEEECCcE-EEcCEEEECCCCcchhhHHhcCCcccc
Confidence              89999999999999874   44 889988885 999999999999984 55666665443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.80  E-value=6.7e-20  Score=138.01  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             eeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCCCc
Q 044609          102 LRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSESI  178 (232)
Q Consensus       102 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~~~  178 (232)
                      ...++...+.+.|.+.+.  |++++.+++|++++.+   ++. +.|.+.+| ++.||.||+|+|.||. +.+.+|+..+.
T Consensus       145 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~-~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~~  219 (276)
T d1ryia1         145 DVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAD  219 (276)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSS-EEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCS
T ss_pred             ceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cce-EEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCccc
Confidence            446788889998887764  8999999999999876   455 88888887 5999999999999984 67778876543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=5e-19  Score=131.61  Aligned_cols=156  Identities=23%  Similarity=0.294  Sum_probs=91.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCc----c---eeee-----------eccc-HHHHHHHcC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRAT----G---AALT-----------LSPN-AWLALDALG   61 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~----~---~~~~-----------~~~~-~~~~l~~~g   61 (232)
                      |+ +++||+||||||+|+++|+.|+++|++|+||||.+.++..    +   +.+.           ..+. ....+....
T Consensus         1 M~-~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~   79 (253)
T d2gqfa1           1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (253)
T ss_dssp             CE-EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CC-CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhc
Confidence            55 5689999999999999999999999999999999876421    1   1111           0000 112222221


Q ss_pred             ChHHHHhhccCceeeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCC
Q 044609           62 VSHKLTSVYAPAKRVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNG  139 (232)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g  139 (232)
                      ..+.+. ..... ...+.....+   .+            ...-....+.+.|.+.+.  +++++++++|++++..++ +
T Consensus        80 ~~~~~~-~~~~~-g~~~~~~~~~---~~------------~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~-~  141 (253)
T d2gqfa1          80 NWDFIS-LVAEQ-GITYHEKELG---QL------------FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQN-D  141 (253)
T ss_dssp             HHHHHH-HHHHT-TCCEEECSTT---EE------------EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCS-C
T ss_pred             ccchhh-hhhhc-CcceeeecCC---cc------------ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecC-C
Confidence            111110 00000 0001100000   00            001124556666666554  899999999999988654 2


Q ss_pred             CccEEEEeCCCcEEEccEEEecCCCch-----------hhhhhhcCC
Q 044609          140 SSAAIINLGDSTIIKAKVLIGCDGVHS-----------MVAQWLGLS  175 (232)
Q Consensus       140 ~~~~~v~~~~g~~~~a~~vV~A~G~~S-----------~~r~~~~~~  175 (232)
                      .....+...++.+++||.||+|+|..|           .+.+.++++
T Consensus       142 ~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~  188 (253)
T d2gqfa1         142 EKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (253)
T ss_dssp             SSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             ceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence            221233455677899999999999876           256666655

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.76  E-value=1.4e-18  Score=132.59  Aligned_cols=77  Identities=14%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             CceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCchh-hhhhhcCCC
Q 044609          100 SGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHSM-VAQWLGLSE  176 (232)
Q Consensus       100 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S~-~r~~~~~~~  176 (232)
                      +....++...+.+.|.+.+.  +++++.+++|+++..++  +.. +.|.+.+| +++||.||+|+|.||. +.+.+|...
T Consensus       140 ~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v-~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l  215 (305)
T d1pj5a2         140 PSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRV-TGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV  215 (305)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred             ccccccchhhhhhhHHhhhhcccccccCCceEEEEEEeC--CEE-EEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence            34557788899999887764  89999999999999875  454 66888777 5999999999999984 667777766


Q ss_pred             Cccc
Q 044609          177 SINS  180 (232)
Q Consensus       177 ~~~~  180 (232)
                      |...
T Consensus       216 P~~~  219 (305)
T d1pj5a2         216 PPDG  219 (305)
T ss_dssp             CTTS
T ss_pred             cccc
Confidence            6544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.75  E-value=8.6e-19  Score=136.38  Aligned_cols=150  Identities=20%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHH-----hCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALR-----RLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFV   78 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~-----~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   78 (232)
                      ..|||+||||||+||++|..|+     ++|++|+||||.+.+...++++.++++++++|+++|+++++.....+.....+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~   85 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   85 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEE
Confidence            3599999999999999999997     57999999999999988899999999999999999999999999888887776


Q ss_pred             EEcCCCce-eEEe-cc-CCCCCCCCceeeeehHHHHHHHhhhCC---CCeEEeCceEEEEEecCCCCCccEEEEeCCCcE
Q 044609           79 TNLGTGAT-QELS-YA-GKSGRIGSGLRSVHRQSLLEALADELP---DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTI  152 (232)
Q Consensus        79 ~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~  152 (232)
                      +....... .... .. ............+.+..+.+.+.+.+.   .........                   ..+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------~~~~~  146 (360)
T d1pn0a1          86 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERP-------------------LIPEK  146 (360)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECS-------------------EEEEE
T ss_pred             EecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEe-------------------cccce
Confidence            66544333 2211 11 112211333456778888877776542   111111000                   11234


Q ss_pred             EEccEEEecCCCchhhhhhh
Q 044609          153 IKAKVLIGCDGVHSMVAQWL  172 (232)
Q Consensus       153 ~~a~~vV~A~G~~S~~r~~~  172 (232)
                      +.+|.+++|||.+|.+|...
T Consensus       147 ~~~d~~~~~dg~~s~v~~~~  166 (360)
T d1pn0a1         147 MEIDSSKAEDPEAYPVTMTL  166 (360)
T ss_dssp             EEECGGGTTCTTCCCEEEEE
T ss_pred             EEeeEEEEeecCCcceEEEE
Confidence            67788888888888776544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.68  E-value=3e-17  Score=124.22  Aligned_cols=133  Identities=21%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ++||+|||||++|+++|..|.+.|++|+||||.+.++...          ..-+.-|+         ..+       ...
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW----------~~n~ypg~---------~~d-------~~~   60 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW----------YWNRYPGA---------RCD-------IES   60 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH----------HHCCCTTC---------BCS-------SCT
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc----------ccCCCCCc---------eec-------ccc
Confidence            4799999999999999999999999999999998774211          00000000         000       000


Q ss_pred             ceeEEecc--CCCCCCCCceeeeehHHHHHHHhhhCC--CC--eEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           85 ATQELSYA--GKSGRIGSGLRSVHRQSLLEALADELP--DD--TIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        85 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                      ........  .... .........+..+.++|.+.++  ++  .|+++++|+++..+++ ... |.|++.++.+++||+|
T Consensus        61 ~~~~~s~~~~~~~~-~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~-~~~-W~V~~~~~~~~~~~~~  137 (298)
T d1w4xa1          61 IEYCYSFSEEVLQE-WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEA-TNT-WTVDTNHGDRIRARYL  137 (298)
T ss_dssp             TTSSCCSCHHHHHH-CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETT-TTE-EEEEETTCCEEEEEEE
T ss_pred             ccccccccccccCC-CCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecC-CCc-eeeccccccccccceE
Confidence            00000000  0000 0111123456677777766554  44  6999999999998664 344 9999999999999999


Q ss_pred             EecCCCch
Q 044609          159 IGCDGVHS  166 (232)
Q Consensus       159 V~A~G~~S  166 (232)
                      |.|+|..|
T Consensus       138 i~atG~ls  145 (298)
T d1w4xa1         138 IMASGQLS  145 (298)
T ss_dssp             EECCCSCC
T ss_pred             EEeecccc
Confidence            99999876

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.66  E-value=7.4e-16  Score=117.42  Aligned_cols=38  Identities=32%  Similarity=0.522  Sum_probs=35.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|++|+++|+.|+++|.+|+||||.+..+
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG   52 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            45899999999999999999999999999999988664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.64  E-value=7.9e-17  Score=124.35  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCcCcce-----eeeecccHHHHHHHcCChHHHHhhccCc
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGLRATGA-----ALTLSPNAWLALDALGVSHKLTSVYAPA   73 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~   73 (232)
                      |..+ .+|+|||||++|+++|..|++.|  .+|+|+||++.++....     +..........  .............+.
T Consensus         1 m~~~-KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   77 (335)
T d2gv8a1           1 LPTI-RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNP--ILTTEPIVGPAALPV   77 (335)
T ss_dssp             CCSC-CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCT--TCCCCCBCCSSSCCB
T ss_pred             CCCC-CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccc--ccccccccccccccc
Confidence            4433 47999999999999999998876  59999999987742110     00000000000  000000000000000


Q ss_pred             eeeEEEE-cCCCce-eEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC
Q 044609           74 KRVFVTN-LGTGAT-QELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD  149 (232)
Q Consensus        74 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~  149 (232)
                      .....+. ...... ....+..... .........+..+.+.|.+.++  +..++++++|++++.++   .. |.|++.+
T Consensus        78 ~~s~~y~~l~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~---~~-w~Vt~~~  152 (335)
T d2gv8a1          78 YPSPLYRDLQTNTPIELMGYCDQSF-KPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD---GS-WVVTYKG  152 (335)
T ss_dssp             CCCCCCTTCBCSSCHHHHSCTTCCC-CTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET---TE-EEEEEEE
T ss_pred             cccccchhhhcCCcHhhhhhhhhcC-CcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC---CE-EEEEEEe
Confidence            0000000 000000 0000110000 0112234678888888877664  56899999999999874   33 6676654


Q ss_pred             C---c---EEEccEEEecCCCchh
Q 044609          150 S---T---IIKAKVLIGCDGVHSM  167 (232)
Q Consensus       150 g---~---~~~a~~vV~A~G~~S~  167 (232)
                      +   +   +..||+||+|+|.+|.
T Consensus       153 ~~~~~~~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         153 TKAGSPISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             SSTTCCEEEEEESEEEECCCSSSS
T ss_pred             cCCCCeEEEEEeeEEEEccccccc
Confidence            2   2   4579999999999983

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=1.3e-14  Score=113.26  Aligned_cols=163  Identities=24%  Similarity=0.222  Sum_probs=100.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCcCcce-eeeecccHHHHHHHcCChHHHHh--hccCce
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR------LGIKALVLEKSDGLRATGA-ALTLSPNAWLALDALGVSHKLTS--VYAPAK   74 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~------~g~~v~viE~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~   74 (232)
                      ++||||||||||||+++|+.|+|      +|++|+||||...++.... |..+.+.++   +++-.......  ......
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l---~~l~p~~~~~~~~~~~~~~  107 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF---EELFPDWKEKGAPLNTPVT  107 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHH---HHHCTTHHHHTCCCCEECC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHH---HHHccchhhhcccccccee
Confidence            35999999999999999999998      8999999999998866543 444555443   44311111111  111111


Q ss_pred             eeEEEEcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCC---
Q 044609           75 RVFVTNLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGD---  149 (232)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~---  149 (232)
                      ....+...........+...........+.+.+..+.+++.+.+.  ++.+..+..+.++..+++ +.. ..+...+   
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~-g~~-~~~~~~~~~~  185 (380)
T d2gmha1         108 EDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSV-KGIATNDVGI  185 (380)
T ss_dssp             EEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSE-EEEEECCEEE
T ss_pred             cceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccC-Cce-eecccccccc
Confidence            222222222222222222111111445667889999999998875  788999999999887653 332 2222221   


Q ss_pred             ---C---------cEEEccEEEecCCCchhhhhh
Q 044609          150 ---S---------TIIKAKVLIGCDGVHSMVAQW  171 (232)
Q Consensus       150 ---g---------~~~~a~~vV~A~G~~S~~r~~  171 (232)
                         +         ....+++.+.+.|....+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~  219 (380)
T d2gmha1         186 QKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQ  219 (380)
T ss_dssp             CTTSCEEEEEECCCEEECSEEEECCCTTCHHHHH
T ss_pred             cccccccccccccccccccEEEEeeeCCCcchHH
Confidence               1         246789999999987665543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.62  E-value=4.1e-15  Score=113.95  Aligned_cols=38  Identities=50%  Similarity=0.600  Sum_probs=34.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|++|+++|+.|+++|++|+||||.+..+
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~g   59 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG   59 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSC
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999987653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.57  E-value=3e-14  Score=108.83  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .++||+|||+|++|+++|+.|+++|.+|+||||.+..+
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG   55 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            45899999999999999999999999999999987653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.56  E-value=7.7e-15  Score=113.01  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=37.4

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+...+||+|||+|++||++|+.|+++|.+|+||||.+..
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            7877899999999999999999999999999999998754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-13  Score=105.84  Aligned_cols=35  Identities=43%  Similarity=0.739  Sum_probs=33.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ||+|||||++||++|+.|+++|++|+|||+++.++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence            89999999999999999999999999999988764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.5e-14  Score=110.20  Aligned_cols=40  Identities=33%  Similarity=0.481  Sum_probs=36.3

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~   40 (232)
                      |++.++||+|||+|+|||++|+.+++.  |.+|+|+||....
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            788889999999999999999999985  7899999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2e-13  Score=88.40  Aligned_cols=95  Identities=23%  Similarity=0.301  Sum_probs=74.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                  +                       
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~------------------~-----------------------   60 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------F-----------------------   60 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------S-----------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh------------------c-----------------------
Confidence            57999999999999999999999999999998754110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                                   .+    --...+.+.|.+.  +++++++++|+.+..+++  .. +.+++++|+++.+|.||.|+|
T Consensus        61 -------------d~----~~~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~--~~-~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          61 -------------DP----MISETLVEVMNAE--GPQLHTNAIPKAVVKNTD--GS-LTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -------------CH----HHHHHHHHHHHHH--SCEEECSCCEEEEEECTT--SC-EEEEETTSCEEEESEEEECSC
T ss_pred             -------------ch----hhHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC--cE-EEEEECCCCEEEcCEEEEecC
Confidence                         00    0123445555554  899999999999987652  33 778999999999999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1e-13  Score=99.45  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=76.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .|||||||||+||+.+|+.++|.|.+++||+++....  + .....+..      .+.......                
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~i--g-~~~cnp~~------gg~~kg~l~----------------   56 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV--M-MPFLPPKP------PFPPGSLLE----------------   56 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT--T-CCSSCCCS------CCCTTCHHH----------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchh--c-ccccCCcc------ccCCCccee----------------
Confidence            5999999999999999999999999999999864210  0 00000000      000000000                


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                        ..++   ..   .+ ..+-.|..+.+.+.. .++..++.+ +|+++..++  +.. ..|.+.+|.++.|+.||+|+|-
T Consensus        57 --reid---~k---G~-av~a~raQ~k~~l~~-~~nL~i~q~-~V~dli~e~--~~v-~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          57 --RAYD---PK---DE-RVWAFHARAKYLLEG-LRPLHLFQA-TATGLLLEG--NRV-VGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             --HHCC---TT---CC-CHHHHHHHHHHHHHT-CTTEEEEEC-CEEEEEEET--TEE-EEEEETTSCCEECSEEEECCTT
T ss_pred             --eeee---cc---ch-hhhhHHHHHHHHHhh-hcCHHHHhc-cceeeEecc--cce-eeEEeccccEEEEeEEEEccCc
Confidence              0000   00   11 112234455444443 347777765 677887765  444 7799999999999999999997


Q ss_pred             chh
Q 044609          165 HSM  167 (232)
Q Consensus       165 ~S~  167 (232)
                      +..
T Consensus       123 FL~  125 (230)
T d2cula1         123 FLG  125 (230)
T ss_dssp             CSS
T ss_pred             cee
Confidence            753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.46  E-value=2e-13  Score=103.46  Aligned_cols=35  Identities=46%  Similarity=0.702  Sum_probs=33.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            79999999999999999999999999999998774

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=5e-13  Score=102.49  Aligned_cols=38  Identities=37%  Similarity=0.453  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +++||+|||+|+|||++|+.++++|.+|+|+||.+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            56999999999999999999999999999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=2.3e-12  Score=85.28  Aligned_cols=99  Identities=15%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+-...                                        
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~----------------------------------------   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----------------------------------------   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc----------------------------------------
Confidence            3689999999999999999999999999999987541110                                        


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                                .   +.    .-...+.+.+.+.  |++++++++|+.++...+++.. ..+.+++|+++.||+||.|.|
T Consensus        75 ----------~---~~----~~~~~~~~~~~~~--GV~i~~~~~v~~i~~~~~~~~v-~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          75 ----------T---AP----PVSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKV-TAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ----------S---CH----HHHHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCE-EEEEETTSCEEECSEEEECCC
T ss_pred             ----------c---ch----hhhhhhhhccccc--ccEEEeCCeEEEEEEeCCCceE-EEEECCCCCEEECCEEEEeeC
Confidence                      0   00    0122334444444  8999999999999886532332 568899999999999999987

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=1.6e-12  Score=97.31  Aligned_cols=39  Identities=33%  Similarity=0.558  Sum_probs=35.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCcC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL-GIKALVLEKSDGLRA   42 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~-g~~v~viE~~~~~~~   42 (232)
                      +++||+||||||+|+++|+.|+++ |++|+||||.+.++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG   71 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG   71 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCC
Confidence            569999999999999999999974 999999999987753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=9.3e-13  Score=93.14  Aligned_cols=118  Identities=18%  Similarity=0.160  Sum_probs=76.9

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEE
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTN   80 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (232)
                      |+++++||+||||||+|+++|+.|+|.|++|+|+|+.........+.                  +..      ...   
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~------------------~~~------~~~---   53 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ------------------LTT------TTD---   53 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG------------------GGG------CSE---
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc------------------ccc------chh---
Confidence            78889999999999999999999999999999999876542211000                  000      000   


Q ss_pred             cCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEE
Q 044609           81 LGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVL  158 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~v  158 (232)
                             ...+.       .........++...+.+++.  ++++..+ .|.++....   .. +.+.+. ...+.+|.+
T Consensus        54 -------~~~~~-------~~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~---~~-~~v~~~-~~~~~~~~~  113 (192)
T d1vdca1          54 -------VENFP-------GFPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSS---KP-FKLFTD-SKAILADAV  113 (192)
T ss_dssp             -------ECCST-------TCTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSS---SS-EEEECS-SEEEEEEEE
T ss_pred             -------hhccc-------cccccccchHHHHHHHHHHHhhcceeeee-eEEeccccc---Cc-EEeccc-ceeeeeeeE
Confidence                   00000       01113456677777766543  6777655 577877653   33 555544 446899999


Q ss_pred             EecCCCc
Q 044609          159 IGCDGVH  165 (232)
Q Consensus       159 V~A~G~~  165 (232)
                      +.|.|..
T Consensus       114 ~~a~g~~  120 (192)
T d1vdca1         114 ILAIGAV  120 (192)
T ss_dssp             EECCCEE
T ss_pred             EEEeeee
Confidence            9999965

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.38  E-value=7.6e-12  Score=81.15  Aligned_cols=96  Identities=22%  Similarity=0.311  Sum_probs=71.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ...+++|||||+.|+-+|..|++.|.+|+++|+.+.+-+.                  .                     
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~------------------~---------------------   61 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------V---------------------   61 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S---------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc------------------c---------------------
Confidence            3468999999999999999999999999999987654111                  0                     


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC---cEEEccEEEe
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS---TIIKAKVLIG  160 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g---~~~~a~~vV~  160 (232)
                                     .    .--...+.+.|.+.  |++++.+++|++++.++   +. +.+++.++   +++.||.|+.
T Consensus        62 ---------------d----~ei~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~~~~D~vlv  116 (119)
T d3lada2          62 ---------------D----EQVAKEAQKILTKQ--GLKILLGARVTGTEVKN---KQ-VTVKFVDAEGEKSQAFDKLIV  116 (119)
T ss_dssp             ---------------C----HHHHHHHHHHHHHT--TEEEEETCEEEEEEECS---SC-EEEEEESSSEEEEEEESEEEE
T ss_pred             ---------------c----chhHHHHHHHHHhc--CceeecCcEEEEEEEeC---CE-EEEEEEECCCCEEEECCEEEE
Confidence                           0    00133445555543  89999999999998874   33 55655443   4799999999


Q ss_pred             cCC
Q 044609          161 CDG  163 (232)
Q Consensus       161 A~G  163 (232)
                      |.|
T Consensus       117 AvG  119 (119)
T d3lada2         117 AVG  119 (119)
T ss_dssp             CSC
T ss_pred             eeC
Confidence            998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.38  E-value=6.7e-12  Score=81.27  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            5 EEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ..+++|||||++|+-+|..|++   .|.+|+++|+.+.+-+.                  +                   
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~------------------~-------------------   60 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG------------------F-------------------   60 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT------------------S-------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc------------------c-------------------
Confidence            3689999999999999987765   48899999987644110                  0                   


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                                       .    .--+..+.+.|.+.  +++++++++|+++..+++  .. ..+.+.+|+++.||.||.|
T Consensus        61 -----------------d----~~~~~~~~~~l~~~--GI~v~~~~~v~~i~~~~~--g~-~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          61 -----------------D----SELRKQLTEQLRAN--GINVRTHENPAKVTKNAD--GT-RHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             -----------------C----HHHHHHHHHHHHHT--TEEEEETCCEEEEEECTT--SC-EEEEETTSCEEEESEEEEC
T ss_pred             -----------------c----chhhHHHHHHHhhC--cEEEEcCCEEEEEEECCC--CE-EEEEECCCCEEEcCEEEEe
Confidence                             0    00133444555544  899999999999987652  33 7789999999999999999


Q ss_pred             CCC
Q 044609          162 DGV  164 (232)
Q Consensus       162 ~G~  164 (232)
                      +|+
T Consensus       115 ~GR  117 (117)
T d1feca2         115 IGR  117 (117)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            995

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.35  E-value=2.5e-12  Score=98.68  Aligned_cols=37  Identities=43%  Similarity=0.598  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ..+|+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            3699999999999999999999999999999988764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.8e-12  Score=97.20  Aligned_cols=38  Identities=37%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+++||||||+|++||++|+.+++.| +|+||||.+..+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~g   42 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE   42 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCC
Confidence            35699999999999999999999888 999999988653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.32  E-value=1.8e-11  Score=79.48  Aligned_cols=91  Identities=20%  Similarity=0.318  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|+++|.+|+++|+.+.+-...                                         
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~-----------------------------------------   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------------------------------   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc-----------------------------------------
Confidence            689999999999999999999999999999876541100                                         


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                               .   +    .-....+.+.|.+.  |++++++++|+++...        .+.+.||+++.||+||.|.|
T Consensus        70 ---------~---~----~~~~~~~~~~l~~~--GV~i~~~~~v~~~~~~--------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          70 ---------A---P----ATLADFVARYHAAQ--GVDLRFERSVTGSVDG--------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ---------S---C----HHHHHHHHHHHHTT--TCEEEESCCEEEEETT--------EEEETTSCEEECSEEEECSC
T ss_pred             ---------C---C----HHHHHHHHHHHHHC--CcEEEeCCEEEEEeCC--------EEEECCCCEEECCEEEEeeC
Confidence                     0   0    01123334445443  8999999999886421        25678999999999999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.2e-12  Score=96.61  Aligned_cols=41  Identities=27%  Similarity=0.425  Sum_probs=37.2

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      |+ .+|||||||||++|+++|+.|+++|++|+|||+++.++.
T Consensus         2 m~-~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 ID-TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CC-CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CC-CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            44 569999999999999999999999999999999987753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=3.1e-11  Score=77.83  Aligned_cols=93  Identities=17%  Similarity=0.303  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  .                       
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~------------------~-----------------------   61 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------F-----------------------   61 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------S-----------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccccc------------------c-----------------------
Confidence            58999999999999999999999999999997654100                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEE-ccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIK-AKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~-a~~vV~A  161 (232)
                                   .    .--+..+.+.|.+.  |++++++++|++++..++  .. +.+++.+|+++. +|.||.|
T Consensus        62 -------------d----~~~~~~~~~~l~~~--gV~i~~~~~v~~i~~~~~--~~-~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          62 -------------D----ESVINVLENDMKKN--NINIVTFADVVEIKKVSD--KN-LSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -------------C----HHHHHHHHHHHHHT--TCEEECSCCEEEEEESST--TC-EEEEETTSCEEEEESEEEEC
T ss_pred             -------------c----HHHHHHHHHHHHhC--CCEEEECCEEEEEEEcCC--Ce-EEEEECCCCEEEeCCEEEEe
Confidence                         0    01133445555553  899999999999987653  34 889999998775 6999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.7e-11  Score=78.79  Aligned_cols=96  Identities=23%  Similarity=0.318  Sum_probs=69.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      ...+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                  +                     
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~------------------~---------------------   62 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------M---------------------   62 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------S---------------------
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh------------------h---------------------
Confidence            3468999999999999999999999999999997754110                  0                     


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC-----cEEEccEE
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS-----TIIKAKVL  158 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g-----~~~~a~~v  158 (232)
                                     .    .--...+.+.|.+.  |++++++++|++++..++ +.. +.++..++     +++.||.|
T Consensus        63 ---------------d----~ei~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~-~~~-v~~~~~~~~~~~~~~ie~D~v  119 (122)
T d1v59a2          63 ---------------D----GEVAKATQKFLKKQ--GLDFKLSTKVISAKRNDD-KNV-VEIVVEDTKTNKQENLEAEVL  119 (122)
T ss_dssp             ---------------C----HHHHHHHHHHHHHT--TCEEECSEEEEEEEEETT-TTE-EEEEEEETTTTEEEEEEESEE
T ss_pred             ---------------h----hhhHHHHHHHHHhc--cceEEeCCEEEEEEEeCC-CcE-EEEEEEeCCCCCeEEEEeCEE
Confidence                           0    00123445555543  899999999999988753 343 55555443     37999999


Q ss_pred             Eec
Q 044609          159 IGC  161 (232)
Q Consensus       159 V~A  161 (232)
                      +.|
T Consensus       120 lvA  122 (122)
T d1v59a2         120 LVA  122 (122)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            886

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.27  E-value=1.5e-11  Score=95.06  Aligned_cols=39  Identities=36%  Similarity=0.536  Sum_probs=34.2

Q ss_pred             cccccEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRR----LGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~----~g~~v~viE~~~~~~   41 (232)
                      ++++||+|||+|++||++|+.|++    +|.+|+||||.+..+
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            356899999999999999999985    699999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.27  E-value=7.9e-11  Score=76.03  Aligned_cols=94  Identities=11%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            5 EEDVVIIGAGIAGLATAVALRR---LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~---~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      ..+++|||||+.|+-+|..|++   +|.+|+++|+.+.+-+.                  .                   
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~------------------~-------------------   62 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG------------------F-------------------   62 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT------------------S-------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc------------------c-------------------
Confidence            3689999999999999987765   45679999987644110                  0                   


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                                       .    .--...+.+.|.+.  |+++++++++++++...+  .. ..+.+++|+++.||.||.|
T Consensus        63 -----------------d----~~~~~~l~~~l~~~--GV~v~~~~~v~~ie~~~~--~~-~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          63 -----------------D----HTLREELTKQLTAN--GIQILTKENPAKVELNAD--GS-KSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             -----------------C----HHHHHHHHHHHHHT--TCEEEESCCEEEEEECTT--SC-EEEEETTSCEEEESEEEEC
T ss_pred             -----------------c----hHHHHHHHHHHHhc--CcEEEcCCEEEEEEEcCC--Ce-EEEEECCCcEEEeCEEEEe
Confidence                             0    01134455566654  899999999999987652  33 7789999999999999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.25  E-value=1.6e-11  Score=79.15  Aligned_cols=93  Identities=22%  Similarity=0.383  Sum_probs=67.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+++|||||+.|+-+|..|++.|.+|+++|+.+.+-+.                                         
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-----------------------------------------   59 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------------------------------------   59 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-----------------------------------------
Confidence            368999999999999999999999999999997644110                                         


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--CcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--STIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g~~~~a~~vV~A~  162 (232)
                               .    .+   . -...+.+.|.+.  +++++.+++|+++..    +.  ..+...+  +.++.||.||.|+
T Consensus        60 ---------~----d~---~-~~~~l~~~l~~~--gV~i~~~~~V~~i~~----~~--~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          60 ---------Y----DS---E-LTAPVAESLKKL--GIALHLGHSVEGYEN----GC--LLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             ---------S----CH---H-HHHHHHHHHHHH--TCEEETTCEEEEEET----TE--EEEECSSSCCCEECCSCEEECC
T ss_pred             ---------c----cc---h-hHHHHHHHHHhh--cceEEcCcEEEEEcC----Ce--EEEEEcCCCeEEEEcCEEEEec
Confidence                     0    00   0 133445555554  899999999999852    23  3233333  3589999999999


Q ss_pred             C
Q 044609          163 G  163 (232)
Q Consensus       163 G  163 (232)
                      |
T Consensus       115 G  115 (115)
T d1lvla2         115 G  115 (115)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.1e-11  Score=84.32  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLG   82 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (232)
                      ++++||+||||||+|+.+|+.|+|.|.+|+|||+....+...                        .             
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~------------------------~-------------   45 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT------------------------T-------------   45 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG------------------------G-------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc------------------------c-------------
Confidence            567899999999999999999999999999999865431110                        0             


Q ss_pred             CCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609           83 TGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      ....  -.+...       .......++.+.+.+++.  ++.+..+ +|+.+...+   .. +.++..+ ..+.++.+++
T Consensus        46 ~~~i--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~---~~-~~v~~~~-~~~~~~~viv  110 (190)
T d1trba1          46 TTEV--ENWPGD-------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN---RP-FRLNGDN-GEYTCDALII  110 (190)
T ss_dssp             CSBC--CCSTTC-------CSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSS---SS-EEEEESS-CEEEEEEEEE
T ss_pred             cchh--hhhhcc-------ccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCC---Cc-EEEEEee-eeEeeeeeee
Confidence            0000  001100       001234455554444432  5566654 688877653   33 6665544 4589999999


Q ss_pred             cCCCch
Q 044609          161 CDGVHS  166 (232)
Q Consensus       161 A~G~~S  166 (232)
                      |+|...
T Consensus       111 a~G~~~  116 (190)
T d1trba1         111 ATGASA  116 (190)
T ss_dssp             CCCEEE
T ss_pred             ecceee
Confidence            999753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.23  E-value=3.6e-11  Score=78.43  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=70.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+++|||||..|+=+|..+++.|.+|+++|+.+..-..                  .                      
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~------------------~----------------------   65 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------A----------------------   65 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc------------------c----------------------
Confidence            368999999999999999999999999999997654111                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCC--cEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDS--TIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g--~~~~a~~vV~A~  162 (232)
                                    .    .--...+.+.|.+.  +++++.++++++++.+++ +.. +.+...+|  +++.||.|+.|.
T Consensus        66 --------------d----~~~~~~l~~~l~~~--gv~~~~~~~v~~v~~~~~-g~~-v~~~~~~g~~~~i~~D~vl~A~  123 (125)
T d1ojta2          66 --------------D----RDLVKVWQKQNEYR--FDNIMVNTKTVAVEPKED-GVY-VTFEGANAPKEPQRYDAVLVAA  123 (125)
T ss_dssp             --------------C----HHHHHHHHHHHGGG--EEEEECSCEEEEEEEETT-EEE-EEEESSSCCSSCEEESCEEECC
T ss_pred             --------------h----hhHHHHHHHHHHHc--CcccccCcEEEEEEEcCC-cEE-EEEEeCCCCeEEEEcCEEEEec
Confidence                          0    00123444555543  789999999999988752 222 33444444  379999999999


Q ss_pred             CC
Q 044609          163 GV  164 (232)
Q Consensus       163 G~  164 (232)
                      |+
T Consensus       124 GR  125 (125)
T d1ojta2         124 GR  125 (125)
T ss_dssp             CE
T ss_pred             CC
Confidence            95

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.9e-11  Score=77.74  Aligned_cols=96  Identities=20%  Similarity=0.302  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEc
Q 044609            6 EDVVIIGAGIAGLATAVALRR----LGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNL   81 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~----~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   81 (232)
                      .+++|||||++|+-+|..|++    .|.+|+++|+.+.+-...                                     
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~-------------------------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-------------------------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc-------------------------------------
Confidence            479999999999999999974    489999999876531100                                     


Q ss_pred             CCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           82 GTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                               +       +.    --...+.+.|.+.  |++++++++|.++..++   .. +.+++.+|+++.||.||.|
T Consensus        81 ---------~-------~~----~~~~~~~~~l~~~--GV~~~~~~~V~~i~~~~---~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          81 ---------L-------PE----YLSNWTMEKVRRE--GVKVMPNAIVQSVGVSS---GK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             ---------S-------CH----HHHHHHHHHHHTT--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEEC
T ss_pred             ---------C-------CH----HHHHHHHHHHHhC--CcEEEeCCEEEEEEecC---CE-EEEEECCCCEEECCEEEEe
Confidence                     0       00    0112334444433  89999999999998764   44 7899999999999999999


Q ss_pred             CCC
Q 044609          162 DGV  164 (232)
Q Consensus       162 ~G~  164 (232)
                      +|.
T Consensus       135 ~Gv  137 (137)
T d1m6ia2         135 VGL  137 (137)
T ss_dssp             CCE
T ss_pred             ecC
Confidence            983

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.22  E-value=7.8e-11  Score=76.71  Aligned_cols=92  Identities=21%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                                          
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~------------------------------------------   68 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV------------------------------------------   68 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc------------------------------------------
Confidence            58999999999999999999999999999997643100                                          


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEec
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGC  161 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A  161 (232)
                              ..   ++    --...+.+.|.+.  ++++++++++++++.+   +.  +.....||+++.||+||.|
T Consensus        69 --------~~---d~----~~~~~~~~~l~~~--gv~~~~~~~v~~i~~~---~~--~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          69 --------YL---DK----EFTDVLTEEMEAN--NITIATGETVERYEGD---GR--VQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             --------TC---CH----HHHHHHHHHHHTT--TEEEEESCCEEEEECS---SB--CCEEEESSCEEECSEEEEC
T ss_pred             --------cc---ch----hhHHHHHHHhhcC--CeEEEeCceEEEEEcC---CC--EEEEEeCCCEEECCEEEEE
Confidence                    00   00    0012233444433  8999999999999764   33  2233568888999999987

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.22  E-value=7.6e-11  Score=76.67  Aligned_cols=96  Identities=15%  Similarity=0.254  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      ..|+|||||+.|+-+|..|++.|.+|+++|+.+.....                  +                       
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~------------------~-----------------------   61 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------K-----------------------   61 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------C-----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc------------------c-----------------------
Confidence            58999999999999999999999999999997654211                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEE---EeCCCcEEEccEEEecC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAII---NLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v---~~~~g~~~~a~~vV~A~  162 (232)
                                   .+    --...+.+.|.+.  +++++.++++++++.+++ +.. ..+   ...+++++.||+||.|.
T Consensus        62 -------------d~----~~~~~~~~~l~~~--gI~v~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          62 -------------DN----ETRAYVLDRMKEQ--GMEIISGSNVTRIEEDAN-GRV-QAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             -------------SH----HHHHHHHHHHHHT--TCEEESSCEEEEEEECTT-SBE-EEEEEEETTEEEEEECSCEEECC
T ss_pred             -------------cc----chhhhhhhhhhcc--ccEEEcCCEEEEEEecCC-ceE-EEEEEEeCCCCEEEEcCEEEEEE
Confidence                         00    0133445555543  899999999999998753 332 222   22345689999999998


Q ss_pred             C
Q 044609          163 G  163 (232)
Q Consensus       163 G  163 (232)
                      |
T Consensus       121 G  121 (121)
T d1mo9a2         121 G  121 (121)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.22  E-value=1.3e-10  Score=74.98  Aligned_cols=92  Identities=14%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-..                  +                      
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~------------------~----------------------   61 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------F----------------------   61 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------S----------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc------------------c----------------------
Confidence            368999999999999999999999999999998754110                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEe-CCC--cEEEccEEEe
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINL-GDS--TIIKAKVLIG  160 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~-~~g--~~~~a~~vV~  160 (232)
                                    .    .--...+.+.|.+.  |++++++++|++++..+   +. +.+.+ .+|  +++.||.|++
T Consensus        62 --------------d----~~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          62 --------------E----KQMAAIIKKRLKKK--GVEVVTNALAKGAEERE---DG-VTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             --------------C----HHHHHHHHHHHHHT--TCEEEESEEEEEEEEET---TE-EEEEEEETTEEEEEEESEEEE
T ss_pred             --------------c----chhHHHHHHHHHhc--CCEEEcCCEEEEEEEcC---CE-EEEEEEeCCCEEEEEeEEEEE
Confidence                          0    00123445555553  89999999999998764   23 44444 344  4799999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.18  E-value=1.3e-10  Score=75.57  Aligned_cols=96  Identities=23%  Similarity=0.386  Sum_probs=70.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+++|||||..|+-+|..|++.|.+|+++|+.+.+-..                  +                      
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~------------------~----------------------   64 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------M----------------------   64 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------S----------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch------------------h----------------------
Confidence            368999999999999999999999999999998755211                  0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC-C--cEEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD-S--TIIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~-g--~~~~a~~vV~A  161 (232)
                                    .    .--...+.+.|.+.  |++++.++++.+++..++ +.. +.+...+ |  +++.||.|+.|
T Consensus        65 --------------d----~~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~-~~~-v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          65 --------------D----AEIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGD-GVK-LTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             --------------C----HHHHHHHHHHHHHS--SCCEECSEEEEEEECSSS-SEE-EEEEESSSCCCEEEEESEEECC
T ss_pred             --------------h----hcchhhhhhhhhcc--cceEEcCCceEEEEEccC-eEE-EEEEECCCCeEEEEEcCEEEEc
Confidence                          0    01234456666654  899999999999987652 222 4555543 3  36899999887


Q ss_pred             C
Q 044609          162 D  162 (232)
Q Consensus       162 ~  162 (232)
                      .
T Consensus       123 A  123 (123)
T d1dxla2         123 A  123 (123)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.8e-10  Score=79.39  Aligned_cols=114  Identities=25%  Similarity=0.331  Sum_probs=71.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      .|||+||||||+|+++|..++|.|.+|+|||++..    +.                +..    .      ...      
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~g----g~----------------~~~----~------~~~------   44 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG----GQ----------------ILD----T------VDI------   44 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT----GG----------------GGG----C------CEE------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEecC----Cc----------------ccc----c------ccc------
Confidence            38999999999999999999999999999997521    10                000    0      000      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecC
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCD  162 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~  162 (232)
                          ..+.        ......-..+.+.+.++..  +.+......+..+......... ......+..++.++.++.+.
T Consensus        45 ----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  111 (184)
T d1fl2a1          45 ----ENYI--------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGL-HQIETASGAVLKARSIIVAT  111 (184)
T ss_dssp             ----CCBT--------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCC-EEEEETTSCEEEEEEEEECC
T ss_pred             ----eecc--------ccchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccce-eeeeeecceeeecccccccc
Confidence                0011        0111233444444443332  4566677777777654421222 55566777789999999999


Q ss_pred             CCchh
Q 044609          163 GVHSM  167 (232)
Q Consensus       163 G~~S~  167 (232)
                      |....
T Consensus       112 g~~~~  116 (184)
T d1fl2a1         112 GAKLP  116 (184)
T ss_dssp             CEEEE
T ss_pred             ccccc
Confidence            97543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.7e-10  Score=73.13  Aligned_cols=96  Identities=20%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                  +                       
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------~-----------------------   61 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------F-----------------------   61 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------S-----------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc------------------h-----------------------
Confidence            58999999999999999999999999999997654110                  0                       


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEE-EeCCCc------EEEccEE
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAII-NLGDST------IIKAKVL  158 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v-~~~~g~------~~~a~~v  158 (232)
                                   .    .-....+.+.|.+.  |++++.+++++++...++ +.. +.. ....|+      ...||.|
T Consensus        62 -------------d----~~~~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~~-g~~-v~~~~~~~g~~~~~~~~~~~D~v  120 (125)
T d3grsa2          62 -------------D----SMISTNCTEELENA--GVEVLKFSQVKEVKKTLS-GLE-VSMVTAVPGRLPVMTMIPDVDCL  120 (125)
T ss_dssp             -------------C----HHHHHHHHHHHHHT--TCEEETTEEEEEEEEETT-EEE-EEEEECCTTSCCEEEEEEEESEE
T ss_pred             -------------h----hHHHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC-eEE-EEEEEccCCcCcCccccccCCEE
Confidence                         0    00133455555543  899999999999987642 222 222 223442      4679999


Q ss_pred             EecCC
Q 044609          159 IGCDG  163 (232)
Q Consensus       159 V~A~G  163 (232)
                      +.|.|
T Consensus       121 l~a~G  125 (125)
T d3grsa2         121 LWAIG  125 (125)
T ss_dssp             EECSC
T ss_pred             EEEeC
Confidence            99987

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.4e-11  Score=89.50  Aligned_cols=37  Identities=41%  Similarity=0.606  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ++|||+||||||+|+++|..+++.|.+|+|||+.+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            5699999999999999999999999999999997765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.14  E-value=1.8e-11  Score=88.58  Aligned_cols=38  Identities=37%  Similarity=0.596  Sum_probs=35.0

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +++|||+||||||||+++|+.++|.|.+|+|||+....
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            36899999999999999999999999999999997654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.12  E-value=3.8e-11  Score=93.21  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .++||||||+|++|+.+|..|+++|++|+|||++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3599999999999999999999999999999986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.7e-11  Score=82.59  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ..++|+||||||||+++|..|+++|++|+|+|+.+.++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            34799999999999999999999999999999998874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.10  E-value=2.6e-10  Score=74.13  Aligned_cols=89  Identities=21%  Similarity=0.333  Sum_probs=66.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGA   85 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (232)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+....      +.+                                  
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~------~d~----------------------------------   72 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE----------------------------------   72 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH----------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC------CCH----------------------------------
Confidence            5799999999999999999999999999998764310      000                                  


Q ss_pred             eeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCC
Q 044609           86 TQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGV  164 (232)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~  164 (232)
                                         --+..+.+.|.+.  |++++++++++++..+     . +   +.+++++.+|+||.|+|.
T Consensus        73 -------------------~~~~~~~~~l~~~--GV~~~~~~~v~~~~~~-----~-v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          73 -------------------ELSNMIKDMLEET--GVKFFLNSELLEANEE-----G-V---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -------------------HHHHHHHHHHHHT--TEEEECSCCEEEECSS-----E-E---EETTEEEECSCEEEECCE
T ss_pred             -------------------HHHHHHHHHHHHC--CcEEEeCCEEEEEeCC-----E-E---EeCCCEEECCEEEEEEEe
Confidence                               0122344555553  8999999999887532     1 2   347778999999999984

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.9e-09  Score=69.78  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+++|||||+.|+-+|..|++.|.+|+|++++...+.                   +                      
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~-------------------~----------------------   58 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------F----------------------   58 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT-------------------S----------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhcc-------------------C----------------------
Confidence            35899999999999999999999999999997532100                   0                      


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCC--C-c--EEEccEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGD--S-T--IIKAKVLI  159 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~--g-~--~~~a~~vV  159 (232)
                                    .    .--...+.+.|.+.  |++++.++.|++++..++.......++..+  + +  ...+|.|+
T Consensus        59 --------------D----~~~~~~l~~~l~~~--Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl  118 (122)
T d1h6va2          59 --------------D----QDMANKIGEHMEEH--GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVL  118 (122)
T ss_dssp             --------------C----HHHHHHHHHHHHHT--TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEE
T ss_pred             --------------C----HHHHHHHHHHHHHC--CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEE
Confidence                          0    00123445555554  899999999999976432111124454433  2 2  46789999


Q ss_pred             ecCC
Q 044609          160 GCDG  163 (232)
Q Consensus       160 ~A~G  163 (232)
                      .|.|
T Consensus       119 ~AiG  122 (122)
T d1h6va2         119 LAVG  122 (122)
T ss_dssp             CCCC
T ss_pred             EEeC
Confidence            9987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.08  E-value=5e-11  Score=85.80  Aligned_cols=38  Identities=42%  Similarity=0.631  Sum_probs=35.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      .+|||+||||||+|+++|..+++.|.+|+|||+.+..+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            57999999999999999999999999999999987663

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.08  E-value=5.4e-11  Score=86.21  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|||+||||||+|+++|..|++.|++|+|||+.+..
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3599999999999999999999999999999998765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.07  E-value=8e-11  Score=87.45  Aligned_cols=36  Identities=36%  Similarity=0.705  Sum_probs=33.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~   41 (232)
                      +||+||||||+||++|+.|+++|+ +|+||||++.++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            489999999999999999999997 699999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.07  E-value=1.6e-10  Score=87.36  Aligned_cols=37  Identities=35%  Similarity=0.571  Sum_probs=34.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      ++|+|||||++||++|+.|+++|++|+|||+.+.++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            4799999999999999999999999999999887743

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1e-10  Score=83.70  Aligned_cols=141  Identities=19%  Similarity=0.229  Sum_probs=76.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCc--eeeEEE
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPA--KRVFVT   79 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~   79 (232)
                      .+++++|||||++|+.+|..|.+.+.  +|++|++.+.+......+  .             ..+.....+.  ....+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~L--s-------------~~~~~~~~~~~~~~~~~~   67 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPL--S-------------KELWFSDDPNVTKTLRFK   67 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGG--G-------------TGGGCC--CTHHHHCEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccccc--c-------------eecccccCchhhhhhhhh
Confidence            46899999999999999999988765  699999876542110000  0             0000000000  000010


Q ss_pred             EcCCCceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEE
Q 044609           80 NLGTGATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLI  159 (232)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV  159 (232)
                       ...+......+...       .....+.. ...+.+  .+++++.+++|+++..++      -.|++.||+++.||.||
T Consensus        68 -~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~--~gI~~~~g~~V~~id~~~------~~V~l~dG~~i~~d~lV  130 (213)
T d1m6ia1          68 -QWNGKERSIYFQPP-------SFYVSAQD-LPHIEN--GGVAVLTGKKVVQLDVRD------NMVKLNDGSQITYEKCL  130 (213)
T ss_dssp             -CTTSCEEESBSSCG-------GGSBCTTT-TTTSTT--CEEEEEETCCEEEEEGGG------TEEEETTSCEEEEEEEE
T ss_pred             -hcccchhhhhcCCh-------hhhhhhhh-HHHHHH--CCeEEEeCCEEEEeeccC------ceeeeccceeeccceEE
Confidence             01111111111100       00011000 011111  278999999999997653      34678999999999999


Q ss_pred             ecCCCchh---hhhhhcCCC
Q 044609          160 GCDGVHSM---VAQWLGLSE  176 (232)
Q Consensus       160 ~A~G~~S~---~r~~~~~~~  176 (232)
                      .|+|....   +....++..
T Consensus       131 iAtG~~~~~~~l~~~~gl~~  150 (213)
T d1m6ia1         131 IATGGTEPNVELAKTGGLEI  150 (213)
T ss_dssp             ECCCEEEECCTTHHHHTCCB
T ss_pred             Eeeeeecchhhhhhccchhh
Confidence            99996432   344445443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.05  E-value=1.1e-10  Score=85.93  Aligned_cols=36  Identities=31%  Similarity=0.578  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+.+|+|||||++|+++|+.|+++|++|+||||+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            347999999999999999999999999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.5e-11  Score=84.67  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ++|||+||||||+|+++|..+++.|.+|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            47999999999999999999999999999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-10  Score=89.46  Aligned_cols=40  Identities=35%  Similarity=0.607  Sum_probs=36.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      .++.+|+|||||++||+||+.|+++|++|+|+|+++.++.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            3567899999999999999999999999999999988753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1e-10  Score=88.10  Aligned_cols=37  Identities=35%  Similarity=0.595  Sum_probs=34.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      +||+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            5999999999999999999999999999999987754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.2e-10  Score=84.65  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      -+|||+||||||+|+++|..++|.|++|+|||+.+..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3699999999999999999999999999999987654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.01  E-value=1.6e-10  Score=83.15  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++|||+||||||+|+++|..++|.|.+|+|||+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            579999999999999999999999999999999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.00  E-value=1.7e-10  Score=89.37  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=35.6

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      |+ ++|||||||+|++|+++|..|++.|++|+|||++...
T Consensus         1 md-~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MD-IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CC-SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CC-CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            55 6799999999999999999999999999999998643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.99  E-value=1.5e-10  Score=83.23  Aligned_cols=37  Identities=27%  Similarity=0.567  Sum_probs=34.5

Q ss_pred             CcccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            2 EMVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         2 ~~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ++++||++||||||+|+++|..+++.|.+|+|+|++.
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3678999999999999999999999999999999874

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.9e-10  Score=80.50  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|||+||||||+|+++|..++|.|.+|+|||+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            369999999999999999999999999999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=6.8e-10  Score=78.16  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=34.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~~   41 (232)
                      ...+|+||||||+||++|..|+|+|+ +|+|+||.+...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            45789999999999999999999999 599999988764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.90  E-value=8.6e-10  Score=83.50  Aligned_cols=37  Identities=22%  Similarity=0.504  Sum_probs=34.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      .+|+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            5799999999999999999999999999999998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.89  E-value=6.7e-10  Score=77.44  Aligned_cols=108  Identities=19%  Similarity=0.283  Sum_probs=67.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGT   83 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (232)
                      |+.+|+|||||++|+.+|..|++.|.++.+++..+.....-   . .+.         +...+.....           .
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~---~-~~~---------l~~~~~~~~~-----------~   57 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY---D-RPP---------LSKDFMAHGD-----------A   57 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB---C-SGG---------GGTTHHHHCC-----------G
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccch---h-hHH---------Hhhhhhhhhh-----------h
Confidence            44679999999999999999999998877777654331100   0 000         0000000000           0


Q ss_pred             CceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCC
Q 044609           84 GATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G  163 (232)
                              .         ....       .+. ...+++++.+.+++++..+.      ..+.+.+|+++.+|.||.|+|
T Consensus        58 --------~---------~~~~-------~~~-~~~~i~~~~~~~v~~i~~~~------~~~~~~~g~~~~~D~vi~a~G  106 (183)
T d1d7ya1          58 --------E---------KIRL-------DCK-RAPEVEWLLGVTAQSFDPQA------HTVALSDGRTLPYGTLVLATG  106 (183)
T ss_dssp             --------G---------GSBC-------CGG-GSTTCEEEETCCEEEEETTT------TEEEETTSCEEECSEEEECCC
T ss_pred             --------h---------hHHH-------HHh-hcCCeEEEEecccccccccc------ceeEecCCcEeeeeeEEEEEE
Confidence                    0         0000       001 12268899999999987653      346789999999999999999


Q ss_pred             Cch
Q 044609          164 VHS  166 (232)
Q Consensus       164 ~~S  166 (232)
                      ...
T Consensus       107 ~~p  109 (183)
T d1d7ya1         107 AAP  109 (183)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=7.8e-10  Score=80.26  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCCCc
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLG-------IKALVLEKSDGLR   41 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g-------~~v~viE~~~~~~   41 (232)
                      .++|+|||||||||+||..|+++|       ++|+|+|+.+.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            468999999999999999999987       5799999998774

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.83  E-value=2.4e-09  Score=77.58  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      ...+|+||||||+|+++|..|+++|++|+|+|+.+.++
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            34799999999999999999999999999999988764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.83  E-value=1.7e-09  Score=79.67  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=3.6e-09  Score=79.97  Aligned_cols=38  Identities=32%  Similarity=0.513  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRA   42 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~   42 (232)
                      ++||+||||||+|+++|+.|+++  |++|+|+|+.+.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            48999999999999999999964  999999999987643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.77  E-value=3.4e-09  Score=76.75  Aligned_cols=35  Identities=31%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      +.|||+||||||+|+++|..++|.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            56999999999999999999999886 588888764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.77  E-value=1.9e-09  Score=78.35  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~   40 (232)
                      +++|||+||||||||+++|..+++.|. +|+|+|+....
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            368999999999999999999999886 58899987653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=2.9e-09  Score=76.89  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCc
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLR   41 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~   41 (232)
                      ++|+||||||||++||..|++.  |++|+|||+.+.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            5899999999999999999875  78999999998763

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.71  E-value=8.6e-09  Score=75.85  Aligned_cols=39  Identities=31%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLR   41 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~   41 (232)
                      +++|||+|||||++|+.+|..+++.|.+|+++|+.+..+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            357999999999999999999999999999999988763

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=4.9e-08  Score=68.58  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRL--GIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~--g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      +|+|||||++|+.+|..|++.  +.+|+++||.+.+....       ..+..+         .....             
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~-------~~~~~~---------l~~~~-------------   52 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS-------AGMQLY---------LEGKV-------------   52 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG-------GGHHHH---------HTTSS-------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccc-------cCcchh---------hcccc-------------
Confidence            599999999999999999986  56899999987653221       111100         00000             


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEE-eCCCc--EEEccEEEec
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIIN-LGDST--IIKAKVLIGC  161 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~-~~~g~--~~~a~~vV~A  161 (232)
                        ..  ..        ......    .+.|.+.  +++++.+++|+++..++   .. +.+. ..+|+  ++.+|.+|.|
T Consensus        53 --~~--~~--------~~~~~~----~~~l~~~--gi~v~~~~~V~~i~~~~---~~-v~~~~~~~g~~~~~~~D~li~a  110 (198)
T d1nhpa1          53 --KD--VN--------SVRYMT----GEKMESR--GVNVFSNTEITAIQPKE---HQ-VTVKDLVSGEERVENYDKLIIS  110 (198)
T ss_dssp             --CC--GG--------GSBSCC----HHHHHHT--TCEEEETEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEEC
T ss_pred             --cc--hH--------HHHHhh----HHHHHHC--CcEEEEeeceeeEeecc---cc-ceeeecccccccccccceeeEe
Confidence              00  00        000011    2333332  89999999999998763   44 5554 34554  6789999999


Q ss_pred             CCCch
Q 044609          162 DGVHS  166 (232)
Q Consensus       162 ~G~~S  166 (232)
                      +|...
T Consensus       111 ~G~~~  115 (198)
T d1nhpa1         111 PGAVP  115 (198)
T ss_dssp             CCEEE
T ss_pred             eccee
Confidence            99754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.71  E-value=2.8e-08  Score=67.82  Aligned_cols=113  Identities=18%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCCce
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTGAT   86 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (232)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+....      +...+.+          ....+              
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~------~~~~~~~----------~~~~~--------------   50 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSK------PMLSHYI----------AGFIP--------------   50 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCS------TTHHHHH----------TTSSC--------------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccc------cchhhhh----------hhhhh--------------
Confidence            69999999999999999965 78999999876542211      0000100          00000              


Q ss_pred             eEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEecCCCch
Q 044609           87 QELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIGCDGVHS  166 (232)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~A~G~~S  166 (232)
                          ..         ......   .+.+.+.  +++++.++.|+.+...    ..   +.+.++.++.+|.+|.|+|...
T Consensus        51 ----~~---------~~~~~~---~~~~~~~--~v~~~~~~~v~~i~~~----~~---~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          51 ----RN---------RLFPYS---LDWYRKR--GIEIRLAEEAKLIDRG----RK---VVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             ----GG---------GGCSSC---HHHHHHH--TEEEECSCCEEEEETT----TT---EEEESSCEEECSEEEECCCEEC
T ss_pred             ----hh---------hhhHHH---HHHHHhc--cceeeeeccccccccc----cc---cccccccccccceeEEEEEecC
Confidence                00         000001   2223332  6789999999888643    22   2345667799999999999753


Q ss_pred             -hhhhhhcCC
Q 044609          167 -MVAQWLGLS  175 (232)
Q Consensus       167 -~~r~~~~~~  175 (232)
                       .+.+..++.
T Consensus       106 ~~~~~~~gl~  115 (167)
T d1xhca1         106 VDLARRSGIH  115 (167)
T ss_dssp             CHHHHHTTCC
T ss_pred             CchhhhcCce
Confidence             333344443

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.68  E-value=8.1e-09  Score=79.57  Aligned_cols=34  Identities=38%  Similarity=0.585  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +||+||||+|++|+.+|..|++.|.+|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5999999999999999999999999999999984

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.63  E-value=1.5e-08  Score=78.09  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .||||||+|++|+.+|..|+++|++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            599999999999999999999999999999974

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.59  E-value=2.2e-08  Score=77.89  Aligned_cols=36  Identities=39%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~~   39 (232)
                      ++||+||||||.+|+.+|..|++.+ ++|+|||+++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            3599999999999999999999987 79999999963

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.58  E-value=2.1e-08  Score=77.90  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      ++||+||||||.+|+.+|..|++.+ ++|+|||+++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3599999999999999999999875 8999999985

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.57  E-value=2.8e-07  Score=62.09  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=30.5

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVII--GAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~Iv--G~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|+|+  |||..|+.+|-.|++.|.+|+++|+.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            456665  99999999999999999999999987644

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.48  E-value=3.2e-08  Score=75.85  Aligned_cols=34  Identities=38%  Similarity=0.510  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +||+||||+|++|+.+|..|++. ++|+|||++..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            38999999999999999999986 99999999964

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=1e-06  Score=60.73  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|||||++|+-+|..|++.|.++++++..+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            48999999999999999999999999988877654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.37  E-value=2.2e-08  Score=72.49  Aligned_cols=30  Identities=37%  Similarity=0.489  Sum_probs=26.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|+|||||++||++|+.|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            499999999999999999999987655554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=4.7e-07  Score=61.30  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=23.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcE
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKA   31 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v   31 (232)
                      .+|+|||||..|+-+|..+++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            58999999999999999999998754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=1.8e-07  Score=67.39  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG---IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g---~~v~viE~~~   38 (232)
                      +|+||||||+|+++|..+++.|   ++|+++|+..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            8999999999999999888754   6799999854

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.14  E-value=8.7e-07  Score=60.83  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLG--IKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g--~~v~viE~~~~~   40 (232)
                      .+|+|||||++|+.+|..|.+.+  .+|++||+.+..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            47999999999999999999976  589999987753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=3.5e-06  Score=51.17  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|+|.|.+|+++|..|.++|.+|.++|.+..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            357999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.98  E-value=3.9e-06  Score=57.71  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|||+|..|+++|..|+++|++|.+++|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.92  E-value=4.7e-06  Score=57.02  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|+|||||-+|..+|..|+++|++|+|+||...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5799999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1e-05  Score=56.06  Aligned_cols=37  Identities=19%  Similarity=0.476  Sum_probs=33.6

Q ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            3 MVEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         3 ~~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+-.+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4456899999999999999999999999999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.3e-05  Score=54.08  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|+|||+|..|..+|..|++.|++|++++|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            5999999999999999999999999999998754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.75  E-value=1.5e-05  Score=51.73  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            599999999999999999999999999999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00053  Score=43.65  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|||+|-+.+-.|..|++..-+|+++-|.+..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            368999999999999999999999999999887654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.64  E-value=1.7e-05  Score=54.68  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+|||||.-|.++|..|++.|++|.++.|++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            79999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=2.8e-05  Score=50.46  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.0012  Score=41.85  Aligned_cols=91  Identities=19%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCChHHHHhhccCceeeEEEEcCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVSHKLTSVYAPAKRVFVTNLGTG   84 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (232)
                      ..+|+|||+|.+.+-.|..|++..-+|+++-|.+.....                                         
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~-----------------------------------------   68 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-----------------------------------------   68 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC-----------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccc-----------------------------------------
Confidence            368999999999999999999998899999887644211                                         


Q ss_pred             ceeEEeccCCCCCCCCceeeeehHHHHHHHhhhCCCCeEEeCceEEEEEecCCCCCccEEEEeC---CCc--EEEccEEE
Q 044609           85 ATQELSYAGKSGRIGSGLRSVHRQSLLEALADELPDDTIQFSSKIAAIDSQTLNGSSAAIINLG---DST--IIKAKVLI  159 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~i~~~~~~g~~~~~v~~~---~g~--~~~a~~vV  159 (232)
                                             ..+.+.+. ..++++++++++++++.-++  +.. ..+.+.   +|+  ++.+|-|.
T Consensus        69 -----------------------~~~~~~~~-~~~~I~v~~~~~v~~i~G~~--~~v-~~v~l~~~~tge~~~l~vdgvF  121 (126)
T d1fl2a2          69 -----------------------QVLQDKLR-SLKNVDIILNAQTTEVKGDG--SKV-VGLEYRDRVSGDIHNIELAGIF  121 (126)
T ss_dssp             -----------------------HHHHHHHH-TCTTEEEESSEEEEEEEESS--SSE-EEEEEEETTTCCEEEEECSEEE
T ss_pred             -----------------------cccccccc-cccceeEEcCcceEEEEccc--cce-eeEEEEECCCCCEEEEECCEEE
Confidence                                   11122222 23478999999999998764  232 334443   343  68888888


Q ss_pred             ecCC
Q 044609          160 GCDG  163 (232)
Q Consensus       160 ~A~G  163 (232)
                      .+=|
T Consensus       122 v~IG  125 (126)
T d1fl2a2         122 VQIG  125 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            8766

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.58  E-value=3e-05  Score=53.33  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||+|..|...|..++++|++|+++|+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.56  E-value=5e-05  Score=50.42  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCcccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      |..++.+|.|||+|-.|.++|+.|+.+++ +++++|.++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            44467899999999999999999998886 8999997764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=7.2e-05  Score=49.54  Aligned_cols=38  Identities=29%  Similarity=0.308  Sum_probs=33.2

Q ss_pred             CcccccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            2 EMVEEDVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         2 ~~~~~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +.+-.+|.||| .|..|.++|..|.++|++|.++|+...
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            33336899999 699999999999999999999998764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=8.1e-05  Score=58.37  Aligned_cols=45  Identities=24%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcCcceeee
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRATGAALT   48 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~~~~~~~   48 (232)
                      .+|||||+|-|+.=+.+|.+|+|.|.+|+-+||++.-+...+++.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            369999999999999999999999999999999998877666554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.42  E-value=6.5e-05  Score=52.32  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||.|-.|+.+|..|+++|++|..+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            49999999999999999999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.36  E-value=0.00012  Score=49.21  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||.|..|.++|..|.++|++|+++||++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            49999999999999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.36  E-value=0.0001  Score=48.39  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +.+|.|||+|-.|.++|+.|+.+|+  ++.++|+++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4689999999999999999999885  799999865

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.30  E-value=0.00017  Score=45.11  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ....|+|||+|.+|..-|..|.+.|.+|+++.....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            457899999999999999999999999999986553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.28  E-value=0.00019  Score=47.78  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|+|+|.+|+.++..+.+.|.+|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            3689999999999999999999999999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.25  E-value=0.00021  Score=48.28  Aligned_cols=35  Identities=26%  Similarity=0.519  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .+|+|+|+|.+|+.+|....+.|..|.++|.+...
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            58999999999999999999999999999987643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=0.00013  Score=49.75  Aligned_cols=32  Identities=31%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|..|.++|..|+++|++|.++.|..
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            59999999999999999999999999997643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00019  Score=47.24  Aligned_cols=35  Identities=31%  Similarity=0.585  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      ..+|.|||+|-.|.++|+.|+.+++  ++.++|..+.
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            4789999999999999999999876  7999997653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.09  E-value=0.00046  Score=45.78  Aligned_cols=35  Identities=14%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +..+|.|||+|-.|.++|+.|+.+|+  +++++|..+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            34799999999999999999999987  799999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.05  E-value=0.00044  Score=46.83  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|-|||-|.+|..+|..|.++|++|.+++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.05  E-value=0.00043  Score=45.70  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~~~   40 (232)
                      .+|+|||||-+|+=+|..+.|.|.+ |+++.|.+..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            4799999999999999999999875 7899887654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00073  Score=41.86  Aligned_cols=36  Identities=22%  Similarity=0.529  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|.|+|||.-|.++|....+.|+++.++|+++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            367999999999999999999999999999988764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.0003  Score=48.29  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=30.0

Q ss_pred             cEEEE-CCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVII-GAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~Iv-G~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|+|| |+|-.|.++|..|++.|++|++..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999 6799999999999999999999999753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.94  E-value=0.00046  Score=44.94  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      +|.|||+|-.|.++|+.|+.+++ +++++|..+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            79999999999999999998876 8999997664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00022  Score=47.05  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ...|+|||||..|+.-|..|.+.|.+|+|+...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999999999999999999999999654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00069  Score=44.89  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|.|||+|-.|.++|+.|..+++  +++++|..+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            579999999999999999999987  799999765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.00055  Score=45.64  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|.+||-|..|..+|..|.++|++|.++||.+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            599999999999999999999999999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.85  E-value=0.00085  Score=43.63  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+|-.|.++|+.|+.+++  ++.++|..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            59999999999999999999875  8999998764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.82  E-value=0.001  Score=43.64  Aligned_cols=35  Identities=14%  Similarity=0.412  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ..+|.|||+|-.|.++|+.|.++++ ++.++|..+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            3589999999999999999999876 7899998664

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.00052  Score=45.70  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|..|..+|..|.++|++|.++++.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            499999999999999999999999999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.79  E-value=0.00093  Score=43.42  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~~   40 (232)
                      .+|.|||+|-.|.++|+.|..+++  ++.++|..+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            379999999999999999999887  79999987653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.78  E-value=0.00097  Score=43.34  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|.|||+|-.|.++|+.|+.+++  ++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999987  799999765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.76  E-value=0.001  Score=44.60  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .|.|||.|..|.++|..|.++|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            59999999999999999999986  577788754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.72  E-value=0.00082  Score=43.89  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|.|||+|-.|.++|+.|..+|+  +++++|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            479999999999999999998875  799999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.68  E-value=0.001  Score=43.31  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||| |..|.++|+.|+.+++  ++.++|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            5999996 9999999999999985  8999998643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.68  E-value=0.0013  Score=44.51  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|-|||.|..|..+|..|.++|++|.+++|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.68  E-value=0.0015  Score=40.09  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|||+|.+|+=+|..|++.+.+++++-+.+.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            6899999999999999999998888887776554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.66  E-value=0.001  Score=43.26  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|.|||| |..|.++|+.|+.+++  +++++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999999987  688999754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.65  E-value=0.0013  Score=44.06  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -.|+|+|+|+.|+.++..+...|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            479999999999999888888899999999865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.64  E-value=0.00083  Score=46.21  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|.|||.|-.|+.+|..++ +|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            4999999999999999887 5999999998753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.001  Score=44.64  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            479999999999999998888998 799999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0018  Score=42.59  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|+|+|.|..|..++..|.++|.+|+++|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            499999999999999999999999999998763

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.0013  Score=43.92  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -.|+|+|+|+.|++++..+...|.+|.++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            479999999999998888888899999999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.55  E-value=0.0015  Score=42.93  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|.|||.|..|..+|..|.++|++|+++++.+..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~   35 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSP   35 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhH
Confidence            4999999999999999999999999999876653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.0013  Score=42.73  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~~   39 (232)
                      +|.|||+|-.|.++|+.|+.+++  ++.++|.++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            59999999999999999998875  6999997653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0018  Score=44.71  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=32.7

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |.|+  +|+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         1 m~~k--kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           1 MAVK--KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCCC--EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCC--EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            6665  5999995 99999999999999999999988754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0014  Score=37.53  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .|.|+|+|.-|.+++....+.|+++.+++..+..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            6999999999999999999999999999987654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.49  E-value=0.0022  Score=40.91  Aligned_cols=38  Identities=26%  Similarity=0.529  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      ..+|+|||+|-+.+-.|..|++..-+|+++-|.+.++.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46999999999999999999999999999999887643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0018  Score=43.32  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|+.++..+...|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4799999999999987776677999999998764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0016  Score=42.13  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      +|.|||+|-.|.++|+.|+.+++  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            59999999999999999998875  799999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0026  Score=42.54  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|+|+|=++.++++.|.+.|.++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3689999999999999999999999999999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.0024  Score=43.20  Aligned_cols=33  Identities=42%  Similarity=0.558  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            579999999999998888888897 789999865

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.002  Score=45.90  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      ..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            689999999999999999999999 7889997653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0044  Score=41.28  Aligned_cols=34  Identities=18%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|+.++..+...|.+++++++.+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4799999999999988777778999999987653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0026  Score=44.95  Aligned_cols=50  Identities=14%  Similarity=0.014  Sum_probs=36.0

Q ss_pred             HHHHHHhhhCC--CCeEEeCceEEEEEecCCCCCccEEEEeCCCcEEEccEEEe
Q 044609          109 SLLEALADELP--DDTIQFSSKIAAIDSQTLNGSSAAIINLGDSTIIKAKVLIG  160 (232)
Q Consensus       109 ~l~~~l~~~~~--~~~i~~~~~v~~i~~~~~~g~~~~~v~~~~g~~~~a~~vV~  160 (232)
                      .+.+.|.+.++  |++++++++|++|..+++ +.. +...+.+|++++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-~~~-v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKD-TGK-FEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETT-TTE-EEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECC-CCE-EEEEEcCCEEEECCEEEE
Confidence            45555555443  899999999999987653 333 444457888999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.95  E-value=0.0038  Score=41.94  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+|+.|++++..+...|. +|.++|+++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            579999999999998887777887 688999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.89  E-value=0.0043  Score=40.61  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.|||+|-.|.++|..|.+.|.++.+.+|..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            49999999999999999999999999999864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0055  Score=40.80  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ..+|+|+|+|=++.+.++.|.+.|. ++.|+.|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4689999999999999999999997 789998864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.011  Score=36.52  Aligned_cols=38  Identities=18%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             cccccEEEECCCH-----------HHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            3 MVEEDVVIIGAGI-----------AGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         3 ~~~~dV~IvG~G~-----------~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +...+|+|+|+||           ++..++..|.+.|++++++..++..
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            3557899999996           7888899999999999999998864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.81  E-value=0.0063  Score=39.29  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=27.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCC--cEEEEecC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGI--KALVLEKS   37 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~--~v~viE~~   37 (232)
                      +|.||| +|..|.++|+.|..+++  ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            699999 69999999999999886  68898853

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.75  E-value=0.0055  Score=41.93  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+|+.|++++..+...|. +|+++|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            479999999999998888777776 788888754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.66  E-value=0.0072  Score=40.49  Aligned_cols=34  Identities=15%  Similarity=0.416  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|++++..+...|. +|++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            479999999999999998888998 5667787653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.61  E-value=0.0065  Score=40.24  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -.|+|+|+|+.|++++..+...|.+|.++++++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            479999999999998888888899999998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.57  E-value=0.007  Score=39.52  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      +|.+||+|-.|.++|..|.+.| .++.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            4999999999999999888776 8999998865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.01  Score=37.20  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             cccEEEECCCH-----------HHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGI-----------AGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~-----------~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+|+|+|+||           ++.-++..|.+.|++++++..++..
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            37899999997           6888889999999999999998865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.52  E-value=0.0084  Score=40.23  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|+.+...+...|. +|+++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            359999999999999999988985 7999998764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0094  Score=38.58  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHh-CC--CcEEEEecCC
Q 044609            7 DVVIIG-AGIAGLATAVALRR-LG--IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~-~g--~~v~viE~~~   38 (232)
                      +|.||| +|..|.++|+.|+. .+  -++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            599999 59999999999864 34  5899999653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.30  E-value=0.012  Score=38.71  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|-+|..+|..|..+|. +++++-|..
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4689999999999999999999998 588888763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.016  Score=38.95  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .+|+|+|+|-++.++++.|.+.|. ++.|+.|...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            689999999999999999999987 6889998754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.18  E-value=0.013  Score=42.64  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +.+|+|.|| |..|..++..|.++|++|+++.|.+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            457999997 999999999999999999999887543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.10  E-value=0.013  Score=42.35  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=32.4

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +.+|+|.|| |..|..++..|.++|++|.++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            458999998 999999999999999999999987654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.014  Score=38.37  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|-|..|..+|..|...|.+|++.|.++
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            689999999999999999999999999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.97  E-value=0.023  Score=38.49  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...|+|.| +|-.|..+|..|+++|.+|+++.|+..
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            46789999 599999999999999999999999853

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.83  E-value=0.014  Score=39.00  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEE-EEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKAL-VLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~-viE~~~   38 (232)
                      -.|+|+|+|+.|++++..+...|.+++ +.++++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            479999999999999988877788655 556543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.79  E-value=0.013  Score=38.35  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..++|+|-|..|..+|..|...|.+|++.|.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            689999999999999999999999999999886

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.76  E-value=0.016  Score=38.54  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|+|+|=++.++++.|.+.+.++.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            589999999999999999999888999999874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.69  E-value=0.016  Score=38.79  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|+|+|-++.++++.|.+.| ++.|+.|..
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            468999999999999999998777 899998864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.69  E-value=0.015  Score=38.78  Aligned_cols=34  Identities=15%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|++++..+...|. +|.++|.++.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            369999999999999988888886 6888887653

>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.69  E-value=0.074  Score=33.34  Aligned_cols=43  Identities=14%  Similarity=0.005  Sum_probs=32.3

Q ss_pred             CcccceeEEEEeeecCCCCC-----CccceeEEEecCeEEEEEEcCCC
Q 044609          177 SINSGRSSVRGLAVFPHGHG-----LNQDIRQFVGVGFRAGFIPLNDR  219 (232)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~  219 (232)
                      |.++|+.+|++++...+-..     ....+..+++++.+++.+|++++
T Consensus         1 P~yaG~vAwRglv~~~~l~~~~~~~~~~~~~~~~g~~~h~v~YpI~g~   48 (128)
T d2voua2           1 PTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGR   48 (128)
T ss_dssp             CEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCS
T ss_pred             CcccCeEEEEEEeehHHCCHhHHhhccCceEEEEcCCceEEEEEecCC
Confidence            56889999999987665321     23456788999999999999643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.67  E-value=0.0059  Score=38.56  Aligned_cols=37  Identities=16%  Similarity=0.033  Sum_probs=28.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCcE-EEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRR-LGIKA-LVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~-~g~~v-~viE~~~~~   40 (232)
                      .++.|+|+|||-+|.+++..+.+ .++++ ..+|.++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            35789999999999999887754 36775 467877655

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.45  E-value=0.013  Score=38.26  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGI   29 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~   29 (232)
                      ..+|.|||| |..|.++|+.|+..++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            358999997 9999999999998653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.43  E-value=0.016  Score=41.57  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+|+|.|| |..|..++..|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            35999998 9999999999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.033  Score=39.23  Aligned_cols=39  Identities=26%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             CCcccccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAG-IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |..+..-++|.||+ =.|.++|..|++.|.+|++.+|+..
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            67666778888874 5899999999999999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.21  E-value=0.031  Score=37.12  Aligned_cols=34  Identities=18%  Similarity=0.418  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      -.|+|+|+|+.|++++..++..|- +|+.+++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            358999999999999999998876 6777887653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.021  Score=43.83  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      .+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            589999999999999999999999 899999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.99  E-value=0.046  Score=40.72  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +..+|+|.| +|..|..++..|.++|++|+++++...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            346799998 799999999999999999999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.99  E-value=0.035  Score=36.89  Aligned_cols=33  Identities=15%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGI-KALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~   39 (232)
                      .|+|+|+|..|++++..++..|. +|.+++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            59999999999999999999875 7888887654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.92  E-value=0.026  Score=37.46  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+|+.|+.++..+...|. .|++.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            479999999999998887777775 667778764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.84  E-value=0.017  Score=37.69  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCC-------cEEEEecC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGI-------KALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~-------~v~viE~~   37 (232)
                      ..+|.|||| |..|.++|+.|+..++       ...++|.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            358999996 9999999999997543       35555554

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.69  E-value=0.036  Score=38.37  Aligned_cols=35  Identities=17%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..+|+|||+|-+|.=+|..|++.+.+++++=+.+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            36899999999999999999999999888877654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.52  E-value=0.04  Score=39.24  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..-++|.||+- .|.++|..|+++|.+|++.+++...
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            45677778765 8999999999999999999998653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.36  E-value=0.077  Score=36.13  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ...|+|-|.|-+|..+|..|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            367999999999999999999999999988864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.34  E-value=0.06  Score=37.15  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~~~   40 (232)
                      .+.+|++.|+|-+|+..|..|.+.+. ++.++|+..-.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            45789999999999999999988776 68899987544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.26  E-value=0.05  Score=35.87  Aligned_cols=33  Identities=12%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      -.|+|+|+ |+.|+.++..+...|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999995 9999999888887774 888888764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.12  E-value=0.075  Score=35.52  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||.|..|...|..|...|.+|..+++....
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc
Confidence            57999999999999999999999999999987643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.05  E-value=0.083  Score=37.87  Aligned_cols=38  Identities=34%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |..+..-++|-|| +=.|.++|..|+++|.+|++.+|+.
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6665667888887 5789999999999999999999875

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.04  E-value=0.062  Score=38.82  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             CCcccccEEEECCC---HHHHHHHHHHHhCCCcEEEEecC
Q 044609            1 MEMVEEDVVIIGAG---IAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         1 m~~~~~dV~IvG~G---~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |.+....++|.||+   =.|.++|..|+++|.+|++..+.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            34455789999986   48999999999999999998764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.99  E-value=0.039  Score=34.62  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      -|+|+|.|..|..++..|  ++.++.++|.++..
T Consensus         2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~   33 (129)
T d2fy8a1           2 HVVICGWSESTLECLREL--RGSEVFVLAEDENV   33 (129)
T ss_dssp             CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTH
T ss_pred             EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHH
Confidence            489999999999999998  46678889987653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.97  E-value=0.08  Score=39.16  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++..|+|+|| |..|..++..|.++|++|.++-|++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3568999996 99999999999999999999988653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.091  Score=36.93  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             CCcccccEEEE--CCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVII--GAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~Iv--G~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |.+-+=++++|  |++-.|.++|..|+++|.+|++.+|++
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            55444456666  667889999999999999999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.89  E-value=0.053  Score=32.12  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             ccccEEEECCCHHHHHH-HHHHHhCCCcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLAT-AVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~-A~~L~~~g~~v~viE~~~~   39 (232)
                      +...|-+||-|=+|++. |..|.++|++|+--|+...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            34689999999999777 9999999999999998653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.85  E-value=0.071  Score=36.99  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRL--------------------GI-KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~--------------------g~-~v~viE~~~~~   40 (232)
                      .+|+|||+|-.++=+|..|.|.                    |. +|.++.|....
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            6899999999999999999983                    54 78899887654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.80  E-value=0.078  Score=36.52  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALR--------------------RLGI-KALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~--------------------~~g~-~v~viE~~~~~   40 (232)
                      .+|+|||+|-+++=+|..|.                    +.|. +|.++-|....
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            68999999999999998887                    5666 68899887643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.80  E-value=0.091  Score=37.17  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             CCcccccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            1 MEMVEEDVVIIGAG-IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         1 m~~~~~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |.....-|+|.||+ =.|..+|..|+++|.+|+++.+...
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            56666778888887 3799999999999999998866543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.56  E-value=0.086  Score=37.34  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=31.9

Q ss_pred             CCcccccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |..+..-++|.|| +=.|.++|..|+++|.+|++.+++.
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5655567888888 5578999999999999999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.1  Score=36.56  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CCcccccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            1 MEMVEEDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         1 m~~~~~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      |...-..++|.||+ =.|.++|..|+++|.+|++.+|+.
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55445678888875 589999999999999999999874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.20  E-value=0.11  Score=37.03  Aligned_cols=35  Identities=11%  Similarity=0.087  Sum_probs=29.8

Q ss_pred             cccEEEECC-C--HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGA-G--IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~-G--~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...++|.|| |  =.|.++|..|+++|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356889986 3  3899999999999999999999864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.19  E-value=0.092  Score=34.87  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCC-------cEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGI-------KALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~-------~v~viE~~   37 (232)
                      .+|.|+|| |..|.++|+.|++..+       ...++|..
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            57999996 9999999999998532       44555644

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.064  Score=42.36  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGI-KALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~-~v~viE~~~   38 (232)
                      ...|+|||+|..|+-+|..|+..|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            3689999999999999999999998 789998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.1  Score=34.44  Aligned_cols=32  Identities=38%  Similarity=0.498  Sum_probs=26.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      -.|+|.|| |+.|+++...+...|.+|+.+.+.
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            46999996 999998777666689999888864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.88  E-value=0.097  Score=36.95  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             ccEEEECCC---HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAG---IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G---~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .-++|.||+   =.|.++|..|++.|.+|++.++.+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            568888864   2799999999999999999888754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.70  E-value=0.14  Score=37.78  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|.| +|..|..++..|.++|++|..+++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5899999 689999999999999999999998754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.64  E-value=0.15  Score=37.87  Aligned_cols=46  Identities=22%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             CCeEEeCceEEEEEecCCCCCccEEEEeC--CC-----cEEEccEEEecCCCch
Q 044609          120 DDTIQFSSKIAAIDSQTLNGSSAAIINLG--DS-----TIIKAKVLIGCDGVHS  166 (232)
Q Consensus       120 ~~~i~~~~~v~~i~~~~~~g~~~~~v~~~--~g-----~~~~a~~vV~A~G~~S  166 (232)
                      +.+|+.++.|+.|+.+++ +...+.|...  ++     +++.||.||+|.|...
T Consensus       233 n~~i~~~t~V~~I~~~~~-g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~  285 (367)
T d1n4wa1         233 KVTIQTLHQVKTIRQTKD-GGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLG  285 (367)
T ss_dssp             SEEEEESEEEEEEEECTT-SSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHH
T ss_pred             CeEEECCCEEEEEEEcCC-CCEEEEEEEECCCCcceeEEEEecCEEEEecchhc
Confidence            589999999999998764 3322444433  22     2688999999999754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.56  E-value=0.19  Score=33.99  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ...|.|||.|-.|..+|..|...|.+|..+++...+
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccccc
Confidence            368999999999999999999999999999976543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.53  E-value=0.12  Score=36.22  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=26.4

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            8 VVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      |+|.|| +-.|.++|..|++.|.+|++++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455575 55899999999999999999998753

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.52  E-value=0.13  Score=33.89  Aligned_cols=33  Identities=36%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|||-|.=|-+-|..|...|++|+|==|..
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g   49 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence            689999999999999999999999998866543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.51  E-value=0.15  Score=35.46  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|+|.|| |-.|.++|..|+++|.+|.++++....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46899998 458999999999999999999987654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.29  E-value=0.21  Score=33.84  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||.|-.|..+|..|.--|.+|..+++....
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccch
Confidence            57999999999999999999999999999986544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.27  E-value=0.13  Score=36.46  Aligned_cols=34  Identities=9%  Similarity=0.116  Sum_probs=28.2

Q ss_pred             cccEEEECC-CH--HHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGA-GI--AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~-G~--~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ...++|.|| |-  .|.++|..|+++|.+|++..++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            357888885 44  78999999999999999998765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.21  E-value=0.1  Score=34.38  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=25.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIK-ALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~-v~viE~~~   38 (232)
                      -.|+|+|+|..|++++..++..|.+ |.+.++++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            4689999999999988877778865 55566543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.06  E-value=0.12  Score=34.20  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             ccEEEECCCHHHHHHHHH--HHhC----CCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVA--LRRL----GIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~--L~~~----g~~v~viE~~~~   39 (232)
                      .+|.|||||-.|.+++..  |++.    +.+++++|.++.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            479999999999876653  4432    358999998753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.14  Score=35.87  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=27.5

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -++|.||+- .|..+|..|+++|.+|.+.+|+..
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            355667766 799999999999999999999753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.92  E-value=0.11  Score=34.18  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -.|+|.|| |+.|+++...+...|.+|+.+++.+
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            35888896 9999998776667899999888754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.89  E-value=0.46  Score=27.41  Aligned_cols=45  Identities=18%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             cEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCCCcCcceeeeecccHHHHHHHcCCh
Q 044609            7 DVVIIGAGIAGLA-TAVALRRLGIKALVLEKSDGLRATGAALTLSPNAWLALDALGVS   63 (232)
Q Consensus         7 dV~IvG~G~~G~~-~A~~L~~~g~~v~viE~~~~~~~~~~~~~~~~~~~~~l~~~g~~   63 (232)
                      +|=+||-|=+|++ +|..|.++|++|.--|+...+            ..+.|+.+|+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~------------~t~~L~~~Gi~   48 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE------------RTAYLRKLGIP   48 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH------------HHHHHHHTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh------------hHHHHHHCCCe
Confidence            4778888888874 489999999999999976432            33457777653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.81  E-value=0.16  Score=35.24  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      -++|-|| +=.|.++|..|+++|.+|++.+++...
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            4566666 678999999999999999999987653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.2  Score=35.09  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=28.3

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -..++|.||+- .|.++|..|+++|.+|++.+|+.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35777778754 68999999999999999999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.79  E-value=0.26  Score=34.24  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCCCcC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSDGLRA   42 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~~~~   42 (232)
                      ..++|.||+ =.|.++|..|++.|.+|.+.+|+.....
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            467777776 4899999999999999999999876543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.68  E-value=0.21  Score=33.60  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||.|-.|..+|..|...|.+|..+++....
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   84 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD   84 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccc
Confidence            57999999999999999999999999999986543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.16  Score=35.72  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=28.7

Q ss_pred             cccEEEECCCH---HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGI---AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~---~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...++|.||+-   .|.++|..|+++|.+|.+..+++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            35678887753   578999999999999999998754

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.54  E-value=0.2  Score=36.28  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .|+|.|| |..|..++..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6899987 99999999999999999999998754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.19  Score=35.19  Aligned_cols=34  Identities=35%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .-++|.||+- .|.++|..|+++|.+|.+.+|+..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3456777654 789999999999999999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.35  E-value=0.21  Score=35.19  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=26.6

Q ss_pred             cE-EEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DV-VIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV-~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +| +|.||+ =.|.++|..|+++|.+|++.+|++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45 555665 489999999999999999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.09  E-value=0.23  Score=34.92  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=28.9

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..-++|.||+- .|.++|..|+++|.+|++.+++..
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34678888753 789999999999999999998753

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.1  Score=37.62  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CC-------cEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL----GI-------KALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~----g~-------~v~viE~~~~~   40 (232)
                      +.+|+|.|+|-+|..+|..|...    |+       ++.++|+..-.
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv   71 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL   71 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEEC
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCc
Confidence            46899999999999999887653    43       59999987543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.07  E-value=0.21  Score=36.16  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..-++|-||+- .|.++|..|+++|.+|++.+++...
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            34456666654 6889999999999999999987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.06  E-value=0.21  Score=35.88  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=26.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -++|.| +|=.|.++|..|+++|.+|++.+|+.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355555 67789999999999999999999875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.21  Score=36.62  Aligned_cols=32  Identities=28%  Similarity=0.479  Sum_probs=28.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|+|.|| |..|..++..|.++|++|+.+|+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            47999885 999999999999999999999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.94  E-value=0.25  Score=34.87  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             cccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..-++|.||+ =.|.++|..|+++|.+|++.+|+.
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457788886 479999999999999999999874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.21  Score=36.65  Aligned_cols=31  Identities=29%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      +|+|.|| |-.|..++..|.++|++|.++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            3899986 899999999999999999999863

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.84  E-value=0.24  Score=34.36  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ...++|.|| +=.|.++|..|+++|.+|++.+|+..
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456888987 45899999999999999999998753

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.24  Score=32.36  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..+|+|||.+. .|.-+|..|.++|..|+++....
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            36899999887 99999999999999999998765

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=89.53  E-value=0.13  Score=37.26  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CC-------cEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL----GI-------KALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~----g~-------~v~viE~~~~~   40 (232)
                      +.+|+|.|+|-+|+..|..|.+.    |+       ++.++|+....
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv   71 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV   71 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEEC
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCc
Confidence            46899999999999999887653    43       59999987543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.52  E-value=0.12  Score=33.47  Aligned_cols=31  Identities=29%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|.+||-|.+|..+|..|.+.|+.+ +..+..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCH
Confidence            5899999999999999999988755 566543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.46  E-value=0.22  Score=35.16  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=27.7

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+- .|.++|..|+++|.+|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567778744 78999999999999999999875

>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.34  E-value=0.77  Score=27.59  Aligned_cols=41  Identities=20%  Similarity=0.063  Sum_probs=26.4

Q ss_pred             ccceeEEEEeeecCCCCCCccceeEEEecCeEEEEEEcCCC
Q 044609          179 NSGRSSVRGLAVFPHGHGLNQDIRQFVGVGFRAGFIPLNDR  219 (232)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (232)
                      +.|+.+|++++..+.............+++.+++.||+.++
T Consensus         2 ~~G~~aWRg~v~~~~~~~g~s~v~~~~g~~~~~V~YPi~~~   42 (111)
T d3c96a2           2 HGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISAR   42 (111)
T ss_dssp             EEEEEEEEEEEEESCCTTSSEEEEEECTTCCEEEEEECCHH
T ss_pred             ccCEEEEeeeEEcCCCCCCCCEEEEecCCCceEEEEecCCC
Confidence            56889999998876543321112223346788999999654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.23  E-value=0.32  Score=34.31  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             EEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            8 VVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         8 V~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ++|.||+ =.|.++|..|+++|.+|++.++++
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4444544 478899999999999999999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.17  Score=35.75  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.|| +=.|.++|..|++.|.+|++.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44555555 4589999999999999999999865

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.99  E-value=0.41  Score=31.91  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ...|.|||.|..|..+|..|...|.+|..+++....
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            358999999999999999999999999999986543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.96  E-value=0.28  Score=33.95  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAG-IAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      +|+|.||+ =.|.++|..|+++|.+|+++++....
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            58888874 57899999999999999999997653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.88  E-value=0.2  Score=34.29  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=25.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEe
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLE   35 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE   35 (232)
                      .|+|.|| |..|..++..|.++|++|.++.
T Consensus         5 tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             EEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            7999995 9999999999999998766654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.3  Score=35.38  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|+|.|| |..|..++..|.++|++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            46899986 889999999999999999999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.27  Score=34.57  Aligned_cols=32  Identities=28%  Similarity=0.177  Sum_probs=26.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -++|.|| +=.|.++|..|+++|.+|++.+++.
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3566676 4489999999999999999999875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.69  E-value=0.29  Score=32.70  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..|.|||.|-.|...|..|...|.+|..+++....
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP   79 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCC
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeecccc
Confidence            58999999999999999999899999999987543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.69  E-value=0.32  Score=34.22  Aligned_cols=32  Identities=28%  Similarity=0.479  Sum_probs=25.8

Q ss_pred             cEE-EECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVV-IIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~-IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+ |-||+ =.|.++|..|+++|.+|++.+|+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            454 44654 479999999999999999999874

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.46  E-value=0.38  Score=33.27  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      ...|+|-|.|-+|..+|..|.+.|.++++.+-+
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            368999999999999999999999999987643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.43  E-value=0.34  Score=34.31  Aligned_cols=33  Identities=30%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.|| +=.|.++|..|+++|.+|++.+++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34566664 4578999999999999999999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.4  Score=33.74  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+ =.|.++|..|+++|.+|++.+|+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457777764 468899999999999999999875

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.27  E-value=0.16  Score=36.06  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             ccccEEEE-CCCHHHHHH-----HHHHHhCCCcEEEEecCCCC
Q 044609            4 VEEDVVII-GAGIAGLAT-----AVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~Iv-G~G~~G~~~-----A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+.|+|+ |=|=+|-++     |..|+++|.+|+++|-++..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            44677777 777778776     88889999999999998653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.09  E-value=0.32  Score=34.31  Aligned_cols=34  Identities=38%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .-++|.||+- .|.++|..|+++|.+|.+.+++..
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3567777764 789999999999999999998753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.22  Score=35.30  Aligned_cols=33  Identities=27%  Similarity=0.468  Sum_probs=28.2

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..++|.||+- .|.++|..|+++|.+|.+..|+.
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4577778765 79999999999999999999875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.03  E-value=0.43  Score=33.34  Aligned_cols=34  Identities=21%  Similarity=0.146  Sum_probs=28.1

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .-++|.||+ =.|.++|..|++.|.+|++.++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            456677774 5789999999999999999998764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.85  E-value=0.39  Score=34.04  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVII-GA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~Iv-G~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .|+|| || +=.|.++|..|++.|.+|++..+..
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            47777 44 5789999999999999999987654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.41  Score=31.38  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|||.+. .|.-+|..|+++|..|++++....
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~   74 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA   74 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccc
Confidence            6899999865 999999999999999999998653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=87.81  E-value=0.34  Score=34.07  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+ =.|.++|..|+++|.+|++.+|+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457888876 478999999999999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=87.61  E-value=0.49  Score=33.26  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             cccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            5 EEDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         5 ~~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .+.++|.||. =.|.++|..|+++|.+|++.+|++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3568899854 478999999999999999999875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.58  E-value=0.35  Score=31.73  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      .+|+|||- .+.|.-+|..|.++|..|+++...
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            68999995 478999999999999999988754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.44  E-value=0.29  Score=34.51  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=26.6

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+- .|.++|..|++.|.+|++.+|+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566666543 68899999999999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.37  Score=34.74  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=27.3

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+ =.|.++|..|++.|.+|++.+|+.
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456777764 478999999999999999999874

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.06  E-value=0.61  Score=30.92  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~~   40 (232)
                      ..+.|||.|-.|...|..|...|.+|..+++....
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            57999999999999999999899999999976543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.06  E-value=0.41  Score=33.31  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .-++|.||+- .|.++|..|+++|.+|.+..|+..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4567778765 899999999999999999998754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=0.4  Score=35.40  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -|+|.| +|..|..++..|.++|++|+.++|..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            466888 89999999999999999999999854

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.99  E-value=0.53  Score=32.87  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=27.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -++|-| ++=.|.++|..|+++|.+|++.++++.
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456666 456788999999999999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.91  E-value=0.47  Score=33.42  Aligned_cols=32  Identities=38%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVII-GA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~Iv-G~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      +|+|| || +=.|.++|..|++.|.+|++.+|+.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34444 54 5688999999999999999999875

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=86.84  E-value=0.33  Score=34.94  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC----C-------CcEEEEecCCCC
Q 044609            4 VEEDVVIIGAGIAGLATAVALRRL----G-------IKALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A~~L~~~----g-------~~v~viE~~~~~   40 (232)
                      .+.+|+|.|+|.+|..+|..|...    |       .++.++|+..-.
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv   71 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI   71 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence            347899999999999999888642    4       379999987544

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.79  E-value=0.52  Score=34.18  Aligned_cols=32  Identities=22%  Similarity=0.149  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .++|.|| |..|..++..|.++|++|..+++..
T Consensus         3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4667665 9999999999999999999999864

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.49  E-value=0.49  Score=30.38  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcE
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKA   31 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v   31 (232)
                      |+|+|||| |.+|.-+-..|.++.+.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~   28 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPI   28 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCc
Confidence            68999999 999999999998886543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.48  E-value=0.38  Score=33.69  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=26.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -++|.|| +=.|.++|..|+++|.+|++.+|+.
T Consensus        12 valITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3556676 3578899999999999999999874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.41  E-value=0.44  Score=35.58  Aligned_cols=29  Identities=31%  Similarity=0.587  Sum_probs=26.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCcEEEEe
Q 044609            7 DVVIIGA-GIAGLATAVALRRLGIKALVLE   35 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g~~v~viE   35 (232)
                      +|+|.|| |..|..++..|.++|++|.++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5889885 8899999999999999999997

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.54  Score=32.88  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.|| +=.|.++|..|+++|.+|++.+|+.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35777776 5678999999999999999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.30  E-value=0.42  Score=33.87  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIG-AGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.| ++-.|.++|..|+++|.+|++.+++.
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4566777 45668899999999999999998875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.21  E-value=0.55  Score=32.70  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=27.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|-|| +=.|.++|..|+++|.+|++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34666677 4478999999999999999999875

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=86.05  E-value=0.82  Score=30.48  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ..|.|||.|-.|...|..|...|.+|..+++...
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            6799999999999999999999999999997654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.74  E-value=0.51  Score=34.43  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=28.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+|.|| |..|..++..|.++|++|..+++..
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46777764 9999999999999999999998743

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.38  Score=33.55  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            7 DVVIIGAG-IAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         7 dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      -++|-||+ =.|.++|..|+++|.+|++.+|++.
T Consensus         6 ~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45555754 4689999999999999999998753

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.69  E-value=0.3  Score=32.03  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             ccEEEECCCHHHH--HHHHHHHhC-C---CcEEEEecCCC
Q 044609            6 EDVVIIGAGIAGL--ATAVALRRL-G---IKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~G~~G~--~~A~~L~~~-g---~~v~viE~~~~   39 (232)
                      .+|+|||||-.|.  .++..+.+. .   -++.++|.++.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~   41 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEG   41 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGG
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCcc
Confidence            3699999996654  333444443 2   37889998754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=85.47  E-value=0.18  Score=33.53  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=25.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      ..|+.||+|..-  .|..|+++|.+|+-+|-.+
T Consensus        22 ~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S~   52 (201)
T d1pjza_          22 ARVLVPLCGKSQ--DMSWLSGQGYHVVGAELSE   52 (201)
T ss_dssp             CEEEETTTCCSH--HHHHHHHHCCEEEEEEECH
T ss_pred             CEEEEecCcCCH--HHHHHHHcCCceEeecccH
Confidence            589999999996  4558888999999998653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.46  E-value=0.35  Score=31.62  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             ccccEEEECCCHHHHHHH--HHHHhC-C---CcEEEEecCCC
Q 044609            4 VEEDVVIIGAGIAGLATA--VALRRL-G---IKALVLEKSDG   39 (232)
Q Consensus         4 ~~~dV~IvG~G~~G~~~A--~~L~~~-g---~~v~viE~~~~   39 (232)
                      +.++|+|||||-.|...+  ..|.+. .   -+++++|.++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~   43 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE   43 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChh
Confidence            457899999998875533  333332 2   37999997653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=85.35  E-value=0.69  Score=32.19  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 044609            5 EEDVVIIGAGIAGLATAVALRRLGIKALVLE   35 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~g~~v~viE   35 (232)
                      ...|+|=|.|-+|..+|..|.+.|.+|+-+.
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            3689999999999999999999999987554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.51  Score=32.43  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCCCC
Q 044609            4 VEEDVVIIGA-GIAGLATAVALRRLGI--KALVLEKSDGL   40 (232)
Q Consensus         4 ~~~dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~~~   40 (232)
                      +...|+|.|| |..|..+...|.++|.  +|.++.|++..
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            3457999996 9999999999988884  89999987643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.29  E-value=0.69  Score=32.53  Aligned_cols=33  Identities=27%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.|| +=.|.++|..|+++|.+|++.+|..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34555554 5579999999999999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.65  Score=33.79  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCC-CcEEEEecCC
Q 044609            7 DVVIIGA-GIAGLATAVALRRLG-IKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~-G~~G~~~A~~L~~~g-~~v~viE~~~   38 (232)
                      +|+|.|| |..|..++..|.++| .+|..+++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4999987 889999999999888 5899998754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.05  E-value=0.22  Score=32.44  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             cEEEECCCHHHHHHHHH-HH-hC----CCcEEEEecCC
Q 044609            7 DVVIIGAGIAGLATAVA-LR-RL----GIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~-L~-~~----g~~v~viE~~~   38 (232)
                      +|+|||||-.|.++++. |. ..    .-++.++|.++
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            49999999888777643 22 22    34799999765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.82  E-value=0.55  Score=31.61  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=26.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGI--KALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~--~v~viE~~~   38 (232)
                      .+|+|.|| |..|..++..|.++|.  +|..+-|.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            58999999 9999999999999987  455554443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.71  E-value=0.38  Score=33.76  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=25.7

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -++|.||+ =.|.++|..|+++|.+|++.+++.
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555654 478899999999999999999865

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.66  E-value=0.4  Score=34.06  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -++|-||+ =.|.++|..|++.|.+|++.+|+.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666664 368899999999999999999874

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.34  E-value=0.55  Score=29.77  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=25.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCC---CcEEEEecC
Q 044609            5 EEDVVIIGA-GIAGLATAVALRRLG---IKALVLEKS   37 (232)
Q Consensus         5 ~~dV~IvG~-G~~G~~~A~~L~~~g---~~v~viE~~   37 (232)
                      +..|.|||| |.+|.-+...|.+++   .++..+-..
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            357999999 999999999998754   356655433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.34  E-value=0.42  Score=33.88  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+ =.|.++|..|+++|.+|++.+|+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346666654 478899999999999999999875

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.15  E-value=0.68  Score=33.39  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcEEEEec
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKALVLEK   36 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v~viE~   36 (232)
                      +|+|.| +|..|..+...|.++|++|+.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            577776 599999999999999999999985

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.14  E-value=0.9  Score=26.15  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 044609            7 DVVIIGAGIAGLATAVALRRLGIKALVL   34 (232)
Q Consensus         7 dV~IvG~G~~G~~~A~~L~~~g~~v~vi   34 (232)
                      +|+|||+|-=--++|+.|.+...++.++
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~   29 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFY   29 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEe
Confidence            5999999999999999999988887776

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.87  E-value=0.46  Score=33.23  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=26.0

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            6 EDVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         6 ~dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      .-++|.||+ =.|.++|..|++.|.+|++.+++.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345555643 468899999999999999999875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.11  E-value=0.55  Score=32.85  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=25.3

Q ss_pred             EEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            9 VIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         9 ~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      +|-||+- .|.++|..|+++|.+|++.+++..
T Consensus         5 lVTGas~GIG~aia~~la~~G~~Vvi~~r~~~   36 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGFRVVVHYRHSE   36 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4555543 789999999999999999998754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.92  E-value=0.51  Score=33.16  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHH-----HHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLA-----TAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~-----~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .|+|.|=|=+|-+     +|..|+++|++|++||-++..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            5788995555544     356778899999999988753

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.41  E-value=0.36  Score=33.83  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=26.7

Q ss_pred             EEEECCCH-HHHHHHHHHHhCCCcEEEEecCCC
Q 044609            8 VVIIGAGI-AGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         8 V~IvG~G~-~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      ++|-||+- .|..+|..|++.|.+|++.++...
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~   35 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFK   35 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56777655 799999999999999999988643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.26  E-value=0.46  Score=33.89  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHH-----HHHHHHhCCCcEEEEecCCCC
Q 044609            7 DVVIIGAGIAGLA-----TAVALRRLGIKALVLEKSDGL   40 (232)
Q Consensus         7 dV~IvG~G~~G~~-----~A~~L~~~g~~v~viE~~~~~   40 (232)
                      .|+|-|=|=+|-+     +|..|+++|.+|++||-++..
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            5777885555555     377788899999999987653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.22  E-value=0.63  Score=32.63  Aligned_cols=32  Identities=31%  Similarity=0.319  Sum_probs=24.9

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCcEEEEecCC
Q 044609            7 DVVIIGAG-IAGLATAVALRRLGIKALVLEKSD   38 (232)
Q Consensus         7 dV~IvG~G-~~G~~~A~~L~~~g~~v~viE~~~   38 (232)
                      -|+|.||+ -.|..+|..|++.|.+|++..+..
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            45666654 478999999999999999876543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.16  E-value=1.2  Score=31.89  Aligned_cols=30  Identities=27%  Similarity=0.455  Sum_probs=27.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 044609            6 EDVVIIGAGIAGLATAVALRRLGIKALVLE   35 (232)
Q Consensus         6 ~dV~IvG~G~~G~~~A~~L~~~g~~v~viE   35 (232)
                      ..|+|=|.|-+|..+|..|.+.|.+|+-+.
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            589999999999999999999999987554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.79  E-value=0.58  Score=30.72  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=24.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      -.|+|.|| |..|+.+.-.+...|.+|.+..+.
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeecc
Confidence            35777786 999999776666679999887654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=0.68  Score=33.16  Aligned_cols=34  Identities=35%  Similarity=0.462  Sum_probs=29.5

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCC
Q 044609            6 EDVVIIGA-GIAGLATAVALRRLGIKALVLEKSDG   39 (232)
Q Consensus         6 ~dV~IvG~-G~~G~~~A~~L~~~g~~v~viE~~~~   39 (232)
                      .+|+|.|| |..|..++..|.++|..+++++....
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            47999986 99999999999999999988876644

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=81.03  E-value=0.76  Score=29.88  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEE-EEecCCCC
Q 044609            5 EEDVVIIGAGIAGLATAVALRRL-GIKAL-VLEKSDGL   40 (232)
Q Consensus         5 ~~dV~IvG~G~~G~~~A~~L~~~-g~~v~-viE~~~~~   40 (232)
                      +.+|.|||.|..|...+..|.+. +++++ +++++...
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~   40 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL   40 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence            46899999999999888888764 56554 66776543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=80.77  E-value=0.26  Score=31.53  Aligned_cols=30  Identities=17%  Similarity=0.151  Sum_probs=20.7

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 044609            8 VVIIGAGIAGLATAVALRRLGIKALVLEKS   37 (232)
Q Consensus         8 V~IvG~G~~G~~~A~~L~~~g~~v~viE~~   37 (232)
                      |-+||+|-.|.++|..|.+.+.-+.++.|.
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~   31 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRS   31 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSS
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            358999999999999886644444577664

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=80.43  E-value=0.63  Score=31.64  Aligned_cols=18  Identities=11%  Similarity=0.204  Sum_probs=15.1

Q ss_pred             EEeCCCcEEEccEEEecCC
Q 044609          145 INLGDSTIIKAKVLIGCDG  163 (232)
Q Consensus       145 v~~~~g~~~~a~~vV~A~G  163 (232)
                      |.++|| ++.+|+||.|||
T Consensus       217 V~~~dg-~~~~D~VV~ATG  234 (235)
T d1w4xa2         217 VRTSER-EYELDSLVLATG  234 (235)
T ss_dssp             EEESSC-EEECSEEEECCC
T ss_pred             EEECCC-EEcCCEEEeCCC
Confidence            456777 589999999999

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.33  E-value=0.77  Score=33.49  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCcE--EEEec
Q 044609            7 DVVIIG-AGIAGLATAVALRRLGIKA--LVLEK   36 (232)
Q Consensus         7 dV~IvG-~G~~G~~~A~~L~~~g~~v--~viE~   36 (232)
                      .|+|.| +|..|..++..|.++|.+|  +.+|+
T Consensus         4 kILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            599999 7999999999999988764  55553