Citrus Sinensis ID: 044639
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 430 | ||||||
| 359488216 | 451 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.922 | 0.646 | 1e-162 | |
| 147818087 | 451 | hypothetical protein VITISV_014264 [Viti | 0.967 | 0.922 | 0.646 | 1e-161 | |
| 224101809 | 437 | predicted protein [Populus trichocarpa] | 0.958 | 0.942 | 0.618 | 1e-153 | |
| 224108351 | 449 | predicted protein [Populus trichocarpa] | 0.958 | 0.917 | 0.622 | 1e-152 | |
| 255571296 | 451 | auxin:hydrogen symporter, putative [Rici | 0.960 | 0.915 | 0.619 | 1e-152 | |
| 357488457 | 453 | Transporter, putative [Medicago truncatu | 0.967 | 0.918 | 0.614 | 1e-151 | |
| 356571384 | 445 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.930 | 0.605 | 1e-150 | |
| 224065212 | 440 | predicted protein [Populus trichocarpa] | 0.958 | 0.936 | 0.607 | 1e-149 | |
| 225424170 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.940 | 0.610 | 1e-148 | |
| 449466284 | 453 | PREDICTED: uncharacterized transporter C | 0.955 | 0.907 | 0.576 | 1e-147 |
| >gi|359488216|ref|XP_003633721.1| PREDICTED: uncharacterized protein LOC100852994 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/452 (64%), Positives = 348/452 (76%), Gaps = 36/452 (7%)
Query: 1 MDSGGADAVNAVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNH 60
+ SGG + ++AV+PL+KLLS+AVIG ++AHPK Q + K TFR+LSKLVFVLFLPCLI H
Sbjct: 12 VKSGGENWLSAVVPLMKLLSLAVIGLILAHPKLQVMSKATFRLLSKLVFVLFLPCLIFTH 71
Query: 61 LVSSISLKNFILWWFIPVNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYI 120
L SI+ KNF+LWWFIPVNV++STA+G +LGY V +IC+PPP+FFRFTIIMTAFGNTG +
Sbjct: 72 LGQSITGKNFVLWWFIPVNVIISTAVGCILGYLVAIICRPPPEFFRFTIIMTAFGNTGNL 131
Query: 121 PLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHMMEPPLEYYEIVEG 180
PL++V SVCH + NPFG +C+ GV+YVSF+QW+ VILVYTLVYHMMEPPLEYYEIVE
Sbjct: 132 PLAIVGSVCH-SAKNPFGPDCHTSGVSYVSFAQWVAVILVYTLVYHMMEPPLEYYEIVEE 190
Query: 181 GEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPV 240
G E EEV+ N LSRPLLVEAEWPG+EDKETEHCK PFIAR+F I
Sbjct: 191 GNEIEEVV------------TANDLSRPLLVEAEWPGMEDKETEHCKTPFIARIFTRISS 238
Query: 241 ISQTNIPDFDSMEDGTPPT----------KVVKKIRIVAEHTPIRQILQPPVFASLFAIL 290
IS + PD S+E+G P + KVV++IRIVAE TPI+ ILQPP ASL AI+
Sbjct: 239 ISPSTFPDVGSVEEGGPISPKSIRCLVEPKVVRRIRIVAEQTPIQHILQPPTVASLLAII 298
Query: 291 IGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGGI-------------TTVG 337
IG+ P LKSF G DAPL FITDSL I+A A +P V+L+LGG+ T +G
Sbjct: 299 IGMFPQLKSFVFGYDAPLSFITDSLSILAGAAIPFVLLILGGMLAEGPHESKLGIRTVIG 358
Query: 338 IVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAA 397
I ARLLVLPLIGIG+I LADK NFLV GD++YRFV+ LQYTTPSAILL AIASLRGYA
Sbjct: 359 ISVARLLVLPLIGIGIILLADKMNFLVPGDKMYRFVLLLQYTTPSAILLGAIASLRGYAV 418
Query: 398 SEASALLFWQHVFALFSLALYLIIYFNLLLVY 429
SEASALLFWQHVFA+FSL+LY+IIY+ +LL Y
Sbjct: 419 SEASALLFWQHVFAVFSLSLYIIIYYKVLLPY 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818087|emb|CAN64887.1| hypothetical protein VITISV_014264 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224101809|ref|XP_002312429.1| predicted protein [Populus trichocarpa] gi|222852249|gb|EEE89796.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224108351|ref|XP_002314817.1| predicted protein [Populus trichocarpa] gi|222863857|gb|EEF00988.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255571296|ref|XP_002526597.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223534037|gb|EEF35756.1| auxin:hydrogen symporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357488457|ref|XP_003614516.1| Transporter, putative [Medicago truncatula] gi|355515851|gb|AES97474.1| Transporter, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356571384|ref|XP_003553857.1| PREDICTED: uncharacterized protein LOC100795484 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224065212|ref|XP_002301719.1| predicted protein [Populus trichocarpa] gi|222843445|gb|EEE80992.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225424170|ref|XP_002280374.1| PREDICTED: uncharacterized protein LOC100249273 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449466284|ref|XP_004150856.1| PREDICTED: uncharacterized transporter C5D6.04-like [Cucumis sativus] gi|449503409|ref|XP_004161988.1| PREDICTED: uncharacterized transporter C5D6.04-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 430 | ||||||
| TAIR|locus:2026366 | 457 | AT1G71090 "AT1G71090" [Arabido | 0.960 | 0.903 | 0.516 | 1.2e-113 | |
| TAIR|locus:2185123 | 431 | AT5G01990 "AT5G01990" [Arabido | 0.372 | 0.371 | 0.429 | 8.8e-61 | |
| TAIR|locus:2156847 | 395 | AT5G65980 "AT5G65980" [Arabido | 0.365 | 0.397 | 0.331 | 3.1e-37 | |
| TAIR|locus:2053908 | 396 | AT2G17500 [Arabidopsis thalian | 0.367 | 0.398 | 0.304 | 3.8e-37 | |
| TAIR|locus:2011731 | 390 | AT1G76520 "AT1G76520" [Arabido | 0.358 | 0.394 | 0.305 | 3.5e-32 | |
| TAIR|locus:2011746 | 415 | AT1G76530 "AT1G76530" [Arabido | 0.341 | 0.354 | 0.326 | 1.1e-29 | |
| POMBASE|SPAC5D6.04 | 452 | SPAC5D6.04 "auxin family trans | 0.258 | 0.245 | 0.265 | 1.1e-10 | |
| SGD|S000004142 | 576 | YLR152C "Putative protein of u | 0.351 | 0.262 | 0.301 | 5.9e-10 | |
| SGD|S000000491 | 427 | YBR287W "Protein of unknown fu | 0.353 | 0.355 | 0.242 | 8.5e-09 | |
| UNIPROTKB|Q2KEK0 | 605 | MGCH7_ch7g1036 "Putative uncha | 0.360 | 0.256 | 0.256 | 9.2e-08 |
| TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 233/451 (51%), Positives = 292/451 (64%)
Query: 1 MDSGGADAVNAVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNH 60
++S D ++ V+PLLKL+ + VIG L+AHPK Q VP+ TFR+LSKLVF LFLPCLI
Sbjct: 9 VNSRVVDILSGVVPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTE 68
Query: 61 LVSSISLKNFILWWFIPVNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYI 120
L SI+L N + WWFIPVNV++S +G+++GY V LIC+PPP+F RFTI+MTAFGNTG +
Sbjct: 69 LGESITLDNIVQWWFIPVNVLLSAVVGSLIGYLVVLICRPPPEFNRFTIVMTAFGNTGNL 128
Query: 121 PLSVVSSVCHNNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHMMEPPXXXXXXXXX 180
L++VSSVCH TN PFG C +GV+YVSF+QW+ VILVYT+VYHMMEPP
Sbjct: 129 LLAIVSSVCHTKTN-PFGPNCNSRGVSYVSFAQWVAVILVYTVVYHMMEPPLEYYEVVEE 187
Query: 181 XXXXXXXXXXXXXXXXXXXPVDN-GLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIP 239
V+N SRPLLVEAEWPG+EDKETEHCK PFIAR+FNSI
Sbjct: 188 EGVEIEEIN-----------VENHDASRPLLVEAEWPGIEDKETEHCKTPFIARVFNSIS 236
Query: 240 VISQTNIPDFD-----SMEDGTPPT-------KVVKKIRIVAEHTPIRQILQPPVFASLF 287
SQT+ P+ D E +P + +V+++IR+VAE TP++ ILQPP ASL
Sbjct: 237 SFSQTSFPEVDLGGEYGGESSSPRSIQCLAEPRVMRRIRVVAEQTPVKHILQPPTIASLL 296
Query: 288 AILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGGI-------------T 334
AI+IG +P LKS G DAPL FITDSL+I+ A VPSVMLVLGG+ T
Sbjct: 297 AIIIGSVPQLKSVVFGYDAPLSFITDSLNIMGSAMVPSVMLVLGGMLSEGPNESTLGLRT 356
Query: 335 TVGIVTARXXXXXXXXXXXXXXADKWNFLVQGDELYRFVIFLQYTTPXXXXXXXXXXXRG 394
T+GI AR ADK + D +++FV+ LQY+TP RG
Sbjct: 357 TIGISVARLLVLPLVGIGIVMSADKLGLISSADPMFKFVLLLQYSTPSAILLGAIASLRG 416
Query: 395 YAASEASALLFWQHVFALFSLALYLIIYFNL 425
YA EASALLFWQH+FAL SL Y++I+F L
Sbjct: 417 YAVREASALLFWQHIFALLSLTFYIVIFFKL 447
|
|
| TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC5D6.04 SPAC5D6.04 "auxin family transmembrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| SGD|S000004142 YLR152C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| SGD|S000000491 YBR287W "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2KEK0 MGCH7_ch7g1036 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00022326001 | SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (451 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 430 | |||
| pfam03547 | 321 | pfam03547, Mem_trans, Membrane transport protein | 4e-30 | |
| pfam03547 | 321 | pfam03547, Mem_trans, Membrane transport protein | 1e-18 | |
| COG0679 | 311 | COG0679, COG0679, Predicted permeases [General fun | 6e-11 | |
| COG0679 | 311 | COG0679, COG0679, Predicted permeases [General fun | 3e-04 |
| >gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 11 AVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNF 70
V +L + I ++G L K +P + ++KLV LP LI + + ++++L+
Sbjct: 2 VVEAVLPVFLIMLLGYLAG--KSGILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMI 59
Query: 71 ILWWFIPVNVVVSTALGAVLGYSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCH 130
+ +W IPV VV+ A+ ++G+ V+ I + P ++ I+ +AF NTG++ L ++ ++
Sbjct: 60 VDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYG 119
Query: 131 NNTNNPFGSECYDKGVAYVSFSQWIHVILVYTLVYHMMEPPLEYYEIVEGGEEEEEVIVH 190
++G++Y S + VI+++TL Y ++E + E + +
Sbjct: 120 ------------EEGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESGDTSGSMTL 167
Query: 191 EI 192
I
Sbjct: 168 LI 169
|
This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321 |
| >gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 430 | |||
| KOG2722 | 408 | consensus Predicted membrane protein [Function unk | 100.0 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 100.0 | |
| COG0679 | 311 | Predicted permeases [General function prediction o | 99.96 | |
| TIGR00946 | 321 | 2a69 he Auxin Efflux Carrier (AEC) Family. | 99.93 | |
| PRK09903 | 314 | putative transporter YfdV; Provisional | 99.91 | |
| TIGR00841 | 286 | bass bile acid transporter. Functionally character | 96.43 | |
| TIGR00841 | 286 | bass bile acid transporter. Functionally character | 88.76 | |
| COG0385 | 319 | Predicted Na+-dependent transporter [General funct | 85.42 | |
| PF01758 | 187 | SBF: Sodium Bile acid symporter family; InterPro: | 85.28 |
| >KOG2722 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-102 Score=766.75 Aligned_cols=378 Identities=38% Similarity=0.744 Sum_probs=329.3
Q ss_pred hhhHHHHHHHHHhhHHhhcccCCCCChhhhhhhcchhhhhhhhHHHHHhhhhccccccchhhhHHHHHHHHHHHHHHHHH
Q 044639 12 VLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLFLPCLILNHLVSSISLKNFILWWFIPVNVVVSTALGAVLG 91 (430)
Q Consensus 12 ~~Pvlkv~~i~~~G~~lA~~r~~il~~~~~k~ls~lv~~vf~PcLiFskla~sit~~~i~~lw~ipl~~~l~~~iG~~~g 91 (430)
+||++|+++|+.+||++|++|.|+|++|+||.+|++||++|+|||+|+|||+++|.+||.+|||||+|++++|++|.++|
T Consensus 14 v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG 93 (408)
T KOG2722|consen 14 VMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG 93 (408)
T ss_pred cccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCcccceeeEEEecCCcCChhHHHHHHhhcCCCCCCCC--hhhhhhhhHHHHHHHHHHHHhhheeeccccC
Q 044639 92 YSVTLICQPPPQFFRFTIIMTAFGNTGYIPLSVVSSVCHNNTNNPFG--SECYDKGVAYVSFSQWIHVILVYTLVYHMME 169 (430)
Q Consensus 92 ~lv~~i~~~P~~~~~~il~~~~fgN~~~LPia~v~sl~~~~~~~pF~--~~~~~~GvaYi~~~~~l~~i~~wt~~y~~l~ 169 (430)
|+++|++|+|+++||++++||+|||+||||+++++|+|++ ++.||| |+|++||++|+++|||+|++++|||+||++.
T Consensus 94 ~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~-~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~ 172 (408)
T KOG2722|consen 94 WLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDE-DGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL 172 (408)
T ss_pred HHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcc-cCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence 9999999999999999999999999999999999999999 999999 6899999999999999999999999999999
Q ss_pred CCch-hhhhhcCCccchhhhhhcccccccccccCCCCCCcccccccCCCCCCCcccccCcccccccccCCCcccCCCCCC
Q 044639 170 PPLE-YYEIVEGGEEEEEVIVHEIEELEEEEPVDNGLSRPLLVEAEWPGLEDKETEHCKKPFIARLFNSIPVISQTNIPD 248 (430)
Q Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (430)
++.. ..+.+++...|...++ . + +++.+++++++++++..++..+++.
T Consensus 173 ~p~~~~~~~~~~~~Ve~~~~~--~---------------~------~~s~e~~~~~~~k~~ll~~~en~~~--------- 220 (408)
T KOG2722|consen 173 PPNLELMSALKESPVEALLES--V---------------P------QPSVESDEDSTCKTLLLASKENRNN--------- 220 (408)
T ss_pred CCchhhhhcCChhhhhhhhhc--c---------------C------CCCcccccccccccccccccccCCC---------
Confidence 8753 1111111111110000 0 0 1111223333334443222111100
Q ss_pred CCCCCCCCCCcchhhhhhhhhhccccccccCchHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHH
Q 044639 249 FDSMEDGTPPTKVVKKIRIVAEHTPIRQILQPPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVML 328 (430)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~ll 328 (430)
....++.+.+++.+...++.++|++++||++|+++|+++|.|||||+++|++++||++++|++.++|+++|||+++
T Consensus 221 ----~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~ill 296 (408)
T KOG2722|consen 221 ----QVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILL 296 (408)
T ss_pred ----ceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhh
Confidence 0011344556667777777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCc
Q 044639 329 VLGGI-------------TTVGIVTARLLVLPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGY 395 (430)
Q Consensus 329 lLGan-------------~iv~i~~~RliilPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~ 395 (430)
+|||| +++|++++||+++|+.|++++..|+|+|.++.|||+|+||++||+++|||+|++++||++|+
T Consensus 297 vLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~ 376 (408)
T KOG2722|consen 297 VLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGV 376 (408)
T ss_pred hhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhh
Confidence 99999 89999999999999999999999999999887999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044639 396 AASEASALLFWQHVFALFSLALYLIIYFNLL 426 (430)
Q Consensus 396 ~q~e~s~iL~~qY~~~~islt~~~t~fl~~~ 426 (430)
+|+|||++|||+|+++.+++|+|+++|+|++
T Consensus 377 ~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv 407 (408)
T KOG2722|consen 377 AERECSVILFWTYAVASLSLTVWSVFFLWLV 407 (408)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999986
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
| >COG0679 Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family | Back alignment and domain information |
|---|
| >PRK09903 putative transporter YfdV; Provisional | Back alignment and domain information |
|---|
| >TIGR00841 bass bile acid transporter | Back alignment and domain information |
|---|
| >TIGR00841 bass bile acid transporter | Back alignment and domain information |
|---|
| >COG0385 Predicted Na+-dependent transporter [General function prediction only] | Back alignment and domain information |
|---|
| >PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 430 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 49/330 (14%), Positives = 108/330 (32%), Gaps = 78/330 (23%)
Query: 2 DSGGADAVNAVLPLLKLLSIAVIGSLIAHPKFQFVPKETFRILSKLVFVLF--LP---CL 56
D ++A L H P E +L K + LP
Sbjct: 274 FKQVTDFLSAATTTHISLD---------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 57 ILNHLVSSI--SLKNFILWW--FIPVNVVVSTALGAVLGYSVTLICQPPP----QFFRFT 108
+S I S+++ + W + VN L ++ S+ P F R +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLN--VLEPAEYRKMFDRLS 379
Query: 109 IIMTAFGNTGYIPLSVVSSV-CHNNTNNP--FGSECYDKGVA---YVSFSQWIHVILVYT 162
+ F + +IP ++S + ++ ++ + + + I I +
Sbjct: 380 V----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 163 LVYHMMEPPL-----EYYEIVEGGEEEEEV-----------IVHEIEELEEEEPVDNGLS 206
V E L ++Y I + + ++ + I H ++ +E E + L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--LF 493
Query: 207 RPLLVEAEWPGLEDKETEHCKKPFIAR--LFNSIPVIS------QTNIPDFDSMEDG--- 255
R + ++ + LE K H + A + N++ + N P ++ + +
Sbjct: 494 RMVFLDFRF--LEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 256 ---TPPTKVVKKIRIVAEHTPIRQI-LQPP 281
++ +++T + +I L
Sbjct: 551 FLPKIEENLIC-----SKYTDLLRIALMAE 575
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 430 | |||
| 3zux_A | 332 | Transporter, ASBTNM; transport protein, membrane p | 95.98 |
| >3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.042 Score=54.40 Aligned_cols=124 Identities=10% Similarity=-0.037 Sum_probs=89.7
Q ss_pred chHHHHHHHHHhhcchhhhhcccCCCCchhhHHHHHHhhccchHHHHHHHHhHH--------------HHHHHHHHHHHH
Q 044639 280 PPVFASLFAILIGIIPGLKSFAVGSDAPLGFITDSLDIVAQATVPSVMLVLGGI--------------TTVGIVTARLLV 345 (430)
Q Consensus 280 Pp~~a~ilgiii~~IP~lk~lf~~~~~pL~fi~d~~~~lG~a~VP~~lllLGan--------------~iv~i~~~Rlii 345 (430)
+-.+.++++.++|..=|=..- .++ ..-..++.++++..|.+ ......+.++++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~~~------~~~-------~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDTFK------WAG-------PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp THHHHHHHHHHHHHHCGGGTG------GGG-------GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchhhh------hhH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 446777777777765331100 111 12235788999999999 344558899999
Q ss_pred HHHHHHHHHHHhhhcCccccCCchhhhHHHhhccChhHHHHHHHHcccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044639 346 LPLIGIGVIYLADKWNFLVQGDELYRFVIFLQYTTPSAILLAAIASLRGYAASEASALLFWQHVFALFSLALYLIIYF 423 (430)
Q Consensus 346 lPiiGv~iv~~a~k~g~~~~~Dpl~~fV~~L~~~~P~A~~~~~itql~~~~q~e~s~iL~~qY~~~~islt~~~t~fl 423 (430)
+|+++.++.... + .||.+...+++..++|++.+...+|++.+-...-+...-..+=.++++++|+|..+++
T Consensus 86 ~Pll~~~l~~~~---~----l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 86 MPATAWCLSKLL---N----LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHT---T----CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---C----CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999866532 2 5899999999999999999988889886633233455567888899999999988876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00