Citrus Sinensis ID: 044668

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MRCRMPATARFASSSAVASTSSSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSYDAESAASSSQNRN
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccHHHHHHHHccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHcccccccHHHHccccccccHHHHccccccc
cccccccHHHcccHHHHHHHcccccccHHHccccccccccccccccccEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHcccccEEEEEccccccccHHHHHHHHHccccc
mrcrmpatarfasssavastssssggfyswlsgeqstsspsldfplpgiclshpsslpdyfyvdcgsiyespisfVKTDLLERMAfrstrdrsniqaspsreqmgcsFAALETYVPEMVELLTDISeatrnpqsLLSEAIFSACYSVVlanpllapecAISRLNSTLIKEFFAENYTAPWMVLAASgvehdqlvsveepllsdlpisiltkspdlctledkdAMTLTVTQMLLegggsfsaggpgkgvysRLHRRvlneiprvqqgvyfcgitpgevnQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVqthgemkpklilspltmasygdvinvpsydaesaasssqnrn
mrcrmpatarfasssavastssSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRStrdrsniqaspsreqmGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQThgemkpklilsPLTMASYGDVINVPSYDaesaasssqnrn
MRCRMPATARFasssavastssssggfyswlsgEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEgggsfsaggpgkgVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSYDAESAASSSQNRN
*******************************************FPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAF******************GCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINV****************
****************************************SLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSYDAESAASSS****
**************************FYSW**********SLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSY*************
*****PA**RFAS***VA********F******EQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSYDAESAAS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRCRMPATARFASSSAVASTSSSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTKSPDLCTLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKPKLILSPLTMASYGDVINVPSYDAESAASSSQNRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.940 0.658 0.428 1e-79
Q9ZU25503 Probable mitochondrial-pr yes no 0.937 0.658 0.411 2e-72
O04308499 Probable mitochondrial-pr no no 0.858 0.607 0.390 2e-60
P11914482 Mitochondrial-processing yes no 0.750 0.549 0.266 6e-12
P11913476 Mitochondrial-processing N/A no 0.804 0.596 0.241 1e-11
P23955 577 Mitochondrial-processing N/A no 0.419 0.256 0.276 3e-10
Q9CZ13480 Cytochrome b-c1 complex s yes no 0.399 0.293 0.275 8e-09
Q4W6B5469 Mitochondrial-processing yes no 0.424 0.319 0.255 1e-08
Q5R513525 Mitochondrial-processing no no 0.626 0.420 0.269 1e-08
O94745502 Probable mitochondrial-pr yes no 0.713 0.501 0.264 2e-08
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 206/481 (42%), Positives = 258/481 (53%), Gaps = 149/481 (30%)

Query: 10  RFASSSAVASTSSSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDY--------- 60
           RF+SS+AVA+    SGG +SW++G+ S+S   LDFPL  + LS P  LPDY         
Sbjct: 23  RFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFPLNDVKLSPP--LPDYVEPAKTQIT 78

Query: 61  ---------------------FYVDCGSIYESPISFVKTDLLERMAFRSTRDRS------ 93
                                 YVDCGSIYE+P S+  T LLERMAF+ST +RS      
Sbjct: 79  TLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVR 138

Query: 94  -------NIQASPSREQMGCSFAALETYVPEMVELLTD---------------------- 124
                  N+ AS SRE M  ++ AL+TYVP+MVE+L D                      
Sbjct: 139 EIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAE 198

Query: 125 ISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLA 184
           ISE ++NPQ LL EA+ SA Y+    N L+A E  I+RLNST+++EF AENYTAP MVLA
Sbjct: 199 ISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNSTVLEEFVAENYTAPRMVLA 258

Query: 185 ASGVEHDQLVSVEEPLLSDLPISILTKSPD--------LCT------------------L 218
           ASGVEH++ + V EPLLSDLP     + P          C                   +
Sbjct: 259 ASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDYRCQADAEMTHFALAFEVPGGWM 318

Query: 219 EDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCGI------ 272
            +K++MTLTV QML+ GGGSFSAGGPGKG+YSRL+ RVLN+ P++     F  I      
Sbjct: 319 SEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIYNNTGL 378

Query: 273 ---------------------------TPGEVNQVQLDRAVQSTNSAILMNLESRIVVSE 305
                                       P EV+QVQL+RA Q+T SAILMNLESR+V SE
Sbjct: 379 FGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASE 438

Query: 306 DIDRQVQTHGEMKP---------------------KLILSPLTMASYGDVINVPSYDAES 344
           DI RQ+ T+GE  P                     KLI SPLTMASYGDV+++PSYDA S
Sbjct: 439 DIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAVS 498

Query: 345 A 345
           +
Sbjct: 499 S 499
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P11913|MPPB_NEUCR Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pep PE=1 SV=1 Back     alignment and function description
>sp|P23955|MPPA_NEUCR Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mpp PE=1 SV=2 Back     alignment and function description
>sp|Q9CZ13|QCR1_MOUSE Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=2 Back     alignment and function description
>sp|Q4W6B5|MPPB_DICDI Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1 Back     alignment and function description
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function description
>sp|O94745|MPPA_SCHPO Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mas2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
356513189 511 PREDICTED: mitochondrial-processing pept 0.960 0.663 0.480 3e-94
356523720 509 PREDICTED: mitochondrial-processing pept 0.960 0.666 0.477 2e-93
356513191 508 PREDICTED: mitochondrial-processing pept 0.946 0.657 0.479 5e-92
217075747 510 unknown [Medicago truncatula] gi|3885152 0.977 0.676 0.465 2e-88
357520795 510 Mitochondrial-processing peptidase subun 0.977 0.676 0.467 1e-87
224100403 506 predicted protein [Populus trichocarpa] 0.951 0.664 0.465 2e-87
225445041 506 PREDICTED: mitochondrial-processing pept 0.983 0.685 0.467 6e-86
255546263 507 mitochondrial processing peptidase alpha 0.912 0.635 0.461 9e-85
449462912 505 PREDICTED: mitochondrial-processing pept 0.943 0.659 0.436 6e-82
294463383 510 unknown [Picea sitchensis] 0.906 0.627 0.443 1e-81
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 234/487 (48%), Positives = 278/487 (57%), Gaps = 148/487 (30%)

Query: 4   RMPATARFASSSAVASTSSSS-GGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDY-- 60
           R+PA+ARFASS A   +SSS  GG + WL+G++++S PSL FPLPG+ L  P  LPDY  
Sbjct: 22  RVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLPSLGFPLPGVTL--PPPLPDYVA 79

Query: 61  ----------------------------FYVDCGSIYESPISFVKTDLLERMAFRSTRDR 92
                                        YVDCGSIYESPISF  T LLERMAF++TR+R
Sbjct: 80  PGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESPISFGATHLLERMAFKTTRNR 139

Query: 93  S-------------NIQASPSREQMGCSFAALETYVPEMVELLTD--------------- 124
           S             N+QAS SREQMG +F AL+TYVPEMVELL D               
Sbjct: 140 SHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMVELLVDCVRNPVFLDWEVNEQ 199

Query: 125 -------ISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYT 177
                  I EA++NPQ LL EAI SA +S  LANPLLA E A++RLNST+++EF AENYT
Sbjct: 200 LLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASESAVNRLNSTILEEFVAENYT 259

Query: 178 APWMVLAASGVEHDQLVSVEEPLLSDL--------PISILTKSPDLCTLED--------- 220
           AP +VLAASGVEH++L+S+ EPLLSDL        P S+ T     C  E          
Sbjct: 260 APRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVYTGGDYRCQKESGRTHFALAF 319

Query: 221 ---------KDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQGVYFCG 271
                    KDAM LTV QMLL GGGSFSAGGPGKG+YSRL++ VLNE P+V +   F  
Sbjct: 320 ELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMYSRLYQNVLNEYPQVHEISAFNN 379

Query: 272 I---------------------------------TPGEVNQVQLDRAVQSTNSAILMNLE 298
           I                                 TPG+V+QVQLDRA Q+T SAILMNLE
Sbjct: 380 IYNDTGIFGIQVTTGSDFVSKAIDIAANEILAVATPGQVDQVQLDRAKQATKSAILMNLE 439

Query: 299 SRIVVSEDIDRQVQTHGEMKP---------------------KLILSPLTMASYGDVINV 337
           SR+VVSEDI RQ+ T+GE KP                     KLI SPLTMASYGDV+ V
Sbjct: 440 SRMVVSEDIGRQILTYGERKPVEDFLKAVDEVTSKDITSISRKLICSPLTMASYGDVLYV 499

Query: 338 PSYDAES 344
           PSY++ S
Sbjct: 500 PSYESVS 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|224100403|ref|XP_002311862.1| predicted protein [Populus trichocarpa] gi|222851682|gb|EEE89229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449462912|ref|XP_004149179.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] gi|449489994|ref|XP_004158479.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|294463383|gb|ADE77223.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.252 0.176 0.561 9.9e-50
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.252 0.178 0.539 2e-42
ASPGD|ASPL0000062345 570 AN1104 [Emericella nidulans (t 0.260 0.161 0.279 2.5e-09
ZFIN|ZDB-GENE-030131-5809 517 pmpca "peptidase (mitochondria 0.215 0.147 0.307 9.5e-09
UNIPROTKB|G4N7C7473 MGG_03600 "Mitochondrial-proce 0.240 0.179 0.275 9.6e-08
FB|FBgn0033235556 CG8728 [Drosophila melanogaste 0.175 0.111 0.365 1.3e-07
UNIPROTKB|Q10713525 PMPCA "Mitochondrial-processin 0.184 0.123 0.378 1.5e-07
SGD|S000004153462 MAS1 "Smaller subunit of the m 0.195 0.149 0.271 1.8e-07
SGD|S000001066 482 MAS2 "Larger subunit of the mi 0.226 0.165 0.283 1.8e-07
UNIPROTKB|B4DKL3394 PMPCA "Mitochondrial-processin 0.184 0.164 0.378 2.5e-07
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 243 (90.6 bits), Expect = 9.9e-50, Sum P(5) = 9.9e-50
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query:   117 EMVELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENY 176
             E+ ++  +I+E  +NP   L EAI SA YS  LA+PL APE A+ RLN  L++EF  EN+
Sbjct:   194 ELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENF 253

Query:   177 TAPWMVLAASGVEHDQLVSVEEPLLSDLP 205
             TA  MVLAASGVEH++L+ V EPL SDLP
Sbjct:   254 TAARMVLAASGVEHEELLKVAEPLTSDLP 282
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4N7C7 MGG_03600 "Mitochondrial-processing peptidase subunit beta" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
FB|FBgn0033235 CG8728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q10713 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000004153 MAS1 "Smaller subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKL3 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VIII1895
hypothetical protein (507 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.173960001
Predicted protein (156 aa)
  •     0.430

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-09
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-06
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 2e-05
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 37/182 (20%)

Query: 61  FYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCS 107
            +V  GS  E          LE MAF+ T                  + A  S +     
Sbjct: 43  VWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYY 102

Query: 108 FAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY 145
            + L   + + ++LL D                      I     +P  L  E +  A Y
Sbjct: 103 LSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALY 162

Query: 146 SV-VLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSD 203
               L  P+L  E +I  +    +K+F+ + Y    MVL   G V+ +++V + E    D
Sbjct: 163 GNHPLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGD 222

Query: 204 LP 205
           LP
Sbjct: 223 LP 224

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 99.97
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.96
PRK15101961 protease3; Provisional 99.87
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.87
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.86
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.78
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.77
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.76
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.67
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.6
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 98.1
PTZ004321119 falcilysin; Provisional 97.83
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 97.43
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 97.25
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 96.55
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 96.04
PHA03081 595 putative metalloprotease; Provisional 94.64
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 91.57
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 82.16
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 82.06
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-56  Score=411.58  Aligned_cols=308  Identities=43%  Similarity=0.585  Sum_probs=280.6

Q ss_pred             CCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcc
Q 044668           36 STSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSRE  102 (353)
Q Consensus        36 ~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d  102 (353)
                      .||++|.+++-||.=.      ++++++++|||+|.+...|++||+|.|.|++|.+++             +..|+++||
T Consensus        31 ~NGlkvase~~pg~f~------~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRe  104 (472)
T KOG2067|consen   31 PNGLKVASENTPGQFC------TVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRE  104 (472)
T ss_pred             CCccEEeccCCCCCce------EEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHh
Confidence            4688888888888766      899999999999999999999999999999999998             899999999


Q ss_pred             eeEEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHh
Q 044668          103 QMGCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECA  159 (353)
Q Consensus       103 ~t~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~  159 (353)
                      .+.|.+++.+++++.++++|+|                      +++...+|+.++.|.+|.++| ++++|.|.+++.+.
T Consensus       105 tm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~  184 (472)
T KOG2067|consen  105 TMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEEN  184 (472)
T ss_pred             hhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhh
Confidence            9999999999999999999999                      334557899999999999999 56999999999999


Q ss_pred             hcccCHHHHHHHHHhhcCCCCeEEEEEccCHHHHHHHHHHhhCCCCCCCCCC--CCc-----------------------
Q 044668          160 ISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPISILTK--SPD-----------------------  214 (353)
Q Consensus       160 l~~it~edL~~f~~~~y~p~n~~lvivGid~~el~~~v~~~f~~l~~~~~~~--~p~-----------------------  214 (353)
                      |++|+.+.|.+|.+.+|+|++|+++.|||+||++.+.++++|++||+...++  .++                       
T Consensus       185 i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~g~El  264 (472)
T KOG2067|consen  185 IDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTGGPEL  264 (472)
T ss_pred             hhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccCccce
Confidence            9999999999999999999999999999999999999999999999843332  111                       


Q ss_pred             -cc-------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-----ecee----ee------
Q 044668          215 -LC-------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-----GVYF----CG------  271 (353)
Q Consensus       215 -~i-------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-----~~y~----fg------  271 (353)
                       ||       ..+|+|++++.|||.+||||+|||+|||||||.||||.+|.+++.|+|+     ++|+    ||      
T Consensus       265 tHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~~s~~  344 (472)
T KOG2067|consen  265 THVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIYASAP  344 (472)
T ss_pred             eeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEeccCC
Confidence             22       3356899999999999999999999999999999999999999999999     5565    55      


Q ss_pred             ----------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc----------------
Q 044668          272 ----------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP----------------  319 (353)
Q Consensus       272 ----------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~----------------  319 (353)
                                      ....+++++||+|||+++++.++|++|+.--.+++++||++.+|.++.                
T Consensus       345 P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI  424 (472)
T KOG2067|consen  345 PQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDI  424 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHH
Confidence                            245779999999999999999999999999999999999999998876                


Q ss_pred             -----cccCCCceEEEEcCCCCCCCHHHHHHHHhc
Q 044668          320 -----KLILSPLTMASYGDVINVPSYDAESAASSS  349 (353)
Q Consensus       320 -----~~l~~~~~~~~vG~~~~~p~~~~~~~~~~~  349 (353)
                           |+|.++|+|+..||..++|.|+.|.+++++
T Consensus       425 ~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~  459 (472)
T KOG2067|consen  425 SRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSS  459 (472)
T ss_pred             HHHHHHHhcCCceeccCCcccCCcchhhhhhhccc
Confidence                 788999999999999999999999998864

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 9e-12
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 2e-11
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 6e-09
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 6e-09
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 6e-09
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-08
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 6e-08
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-07
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 7e-06
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 7e-06
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 9e-05
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 9e-05
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 9e-05
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 4e-04
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 5e-04
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 39/184 (21%)
Query: 62  YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
           ++D GS YES  +      LE +AF+ T++R             +++ A  SRE      
Sbjct: 40  WIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYI 99
Query: 109 AALETYVPEMVELLTDI-------------------SEATRNPQSLLSEAIFSACYSVV- 148
            AL   VP+ VELL DI                    E   N  S+  E +F+  ++   
Sbjct: 100 KALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSM-REVVFNYLHATAF 158
Query: 149 ----LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSD 203
               LA  +  P   I +L+   + E+ + +YTAP MVLAA+ GVEH QL+ + +     
Sbjct: 159 QGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGG 218
Query: 204 LPIS 207
           +P +
Sbjct: 219 VPFT 222
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 3e-56
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 2e-53
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 6e-47
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 6e-46
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 7e-42
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 2e-40
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-24
3eoq_A406 Putative zinc protease; two similar domains of bet 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3gwb_A434 Peptidase M16 inactive domain family protein; pept 1e-06
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-06
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 3e-05
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  188 bits (479), Expect = 3e-56
 Identities = 66/391 (16%), Positives = 123/391 (31%), Gaps = 114/391 (29%)

Query: 62  YVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSF 108
           ++  GS YE+  +   + LL   +  +T+  S              +  + +RE M  + 
Sbjct: 50  FIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTV 109

Query: 109 AALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACYS 146
             L   V  ++E L +                       + A +NPQ+ + E + +A Y 
Sbjct: 110 ECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR 169

Query: 147 VVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLSDLPI 206
             LAN L  P+  I ++    + ++   ++T+  M L   GV H  L  V E  L+    
Sbjct: 170 NALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGG 229

Query: 207 SILTKSP------------DL-----------CTLEDKDAMTLTVTQMLLEGGGSFSAGG 243
             L+ +                            +   +A   +V Q +L   G+     
Sbjct: 230 LGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVL---GAGPHVK 286

Query: 244 PGKGVYSRLHRRVLNEIPRVQQ--------------GVYFCG------------------ 271
            G    S L++ V   + +                 G Y                     
Sbjct: 287 RGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKT 346

Query: 272 ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP------------ 319
           I  G ++   +  A     +  LM++ES     +++  Q    G   P            
Sbjct: 347 IAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 406

Query: 320 ---------KLILSPLTMASYGDVINVPSYD 341
                    K +    +MA+ G++ + P  D
Sbjct: 407 DADVINAAKKFVSGRKSMAASGNLGHTPFID 437
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.86
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.84
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.74
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.71
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.42
3ih6_A197 Putative zinc protease; bordetella pertussis toham 96.2
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 95.11
3eoq_A406 Putative zinc protease; two similar domains of bet 94.66
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 94.16
3gwb_A434 Peptidase M16 inactive domain family protein; pept 93.85
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 91.38
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 91.29
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 91.18
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 90.67
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 88.44
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 87.57
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 83.01
3go9_A492 Insulinase family protease; IDP00573, structural g 82.31
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=8.3e-48  Score=382.03  Aligned_cols=293  Identities=31%  Similarity=0.432  Sum_probs=258.6

Q ss_pred             CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcceeEEEeecccCCHHHHHHHHH
Q 044668           57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSFAALETYVPEMVELLT  123 (353)
Q Consensus        57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~  123 (353)
                      +++.++|++|+++|+++..|++||+|||+|+||++++             .+|++|++|.|+|++++++++++.+|++|+
T Consensus        27 ~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~  106 (475)
T 1hr6_A           27 SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMS  106 (475)
T ss_dssp             EEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHH
T ss_pred             EEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999988             899999999999999999999999999999


Q ss_pred             H----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCC
Q 044668          124 D----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPW  180 (353)
Q Consensus       124 d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n  180 (353)
                      |                      ++...++|..++.+.+++.+| +|||+++.+|+++.|++++.++|++||++||+|+|
T Consensus       107 d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n  186 (475)
T 1hr6_A          107 ETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN  186 (475)
T ss_dssp             HHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGG
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCccc
Confidence            9                      233458999999999999999 68999999999999999999999999999999999


Q ss_pred             eEEEEEccCHHHHHHHHHHhhCCCCCCCCC-C--C-----------------Cc----cc-------cCCCCchHHHHHH
Q 044668          181 MVLAASGVEHDQLVSVEEPLLSDLPISILT-K--S-----------------PD----LC-------TLEDKDAMTLTVT  229 (353)
Q Consensus       181 ~~lvivGid~~el~~~v~~~f~~l~~~~~~-~--~-----------------p~----~i-------~~~~~d~~~~~vl  229 (353)
                      |+|+++|+++++++++++++|++||....+ .  .                 +.    +|       ...++|++++.|+
T Consensus       187 ~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl  266 (475)
T 1hr6_A          187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATL  266 (475)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHH
Confidence            999999999999999999999999754221 0  0                 10    11       2356899999999


Q ss_pred             HHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee-----------------------ecC---
Q 044668          230 QMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG-----------------------ITP---  274 (353)
Q Consensus       230 ~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg-----------------------l~~---  274 (353)
                      +.||||+++|+|||||+|+.||||++||+++|++|+ .+    |.    |+                       +..   
T Consensus       267 ~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~  346 (475)
T 1hr6_A          267 QTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD  346 (475)
T ss_dssp             HHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTT
T ss_pred             HHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999998 21    21    22                       345   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------cccC----------
Q 044668          275 GEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLIL----------  323 (353)
Q Consensus       275 ~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l~----------  323 (353)
                      +++|++||++||+++++++...+++...+++.++++++.+|.+.+                     +++.          
T Consensus       347 ~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~  426 (475)
T 1hr6_A          347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGK  426 (475)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccC
Confidence            679999999999999999999999999999999988776787654                     5563          


Q ss_pred             CCceEEEEcCCCCCCCHHHHHHHHhc
Q 044668          324 SPLTMASYGDVINVPSYDAESAASSS  349 (353)
Q Consensus       324 ~~~~~~~vG~~~~~p~~~~~~~~~~~  349 (353)
                      .+++++++|+...+|+++++++.+.+
T Consensus       427 ~~~~~~v~g~~~~~~~~~~~~~~~~~  452 (475)
T 1hr6_A          427 GRATVVMQGDRGSFGDVENVLKAYGL  452 (475)
T ss_dssp             CCCEEEEESCGGGGCCHHHHHHHTTC
T ss_pred             CCcEEEEECCcccCcCHHHHHHHhcc
Confidence            38999999999999999999988753
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 2e-10
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 9e-08
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 3e-07
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 7e-07
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 1e-06
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2e-05
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 2e-05
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 2e-04
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 3e-04
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 0.001
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 0.003
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 0.004
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 61  FYVDCGSIYESPISFVKTDLLERMAFRSTRDRSNIQASPSREQMGCSFAAL--------- 111
            ++  GS YE+  +   + LL   +  +T+  S+ + +   E +G   +           
Sbjct: 33  LFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYT 92

Query: 112 --------------------------ETYVPEMVELLTDISEATRNPQSLLSEAIFSACY 145
                                             +L  D + A +NPQ+ + E + +A Y
Sbjct: 93  VECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAY 152

Query: 146 SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLS 202
              LAN L  P+  I ++    + ++   ++T+  M L   GV H  L  V E  L+
Sbjct: 153 RNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 209
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.98
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.97
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.97
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.97
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.96
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.96
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.96
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.85
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.85
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.85
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.77
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.75
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.69
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 98.92
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.75
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.41
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 97.35
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 96.54
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 96.46
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 96.32
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 96.17
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 94.2
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 93.12
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 92.98
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 88.36
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 87.8
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 87.05
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-33  Score=247.08  Aligned_cols=169  Identities=13%  Similarity=0.170  Sum_probs=150.9

Q ss_pred             CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC------cCccccCcceeEEEeec
Q 044668           37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS------NIQASPSREQMGCSFAA  110 (353)
Q Consensus        37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~------~~~a~t~~d~t~~~~~~  110 (353)
                      ||++|+..+.|+.++     ++++++|++|+++|++++.|+|||+|||+|+|+....      .+|+++++|++.|++++
T Consensus         8 NGl~v~~~~~~~~~~-----v~i~~~~~~Gs~~E~~~~~G~ahlle~l~~~~~~~~~~~~~g~~~na~t~~~~t~~~~~~   82 (213)
T d3cx5a1           8 NGIVVATEHNPSAHT-----ASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAAKEGLALSSNISRDFQSYIVSS   82 (213)
T ss_dssp             SSSEEEEEECTTCSS-----EEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHHHHHHHTTCEEEEEECSSCEEEEEEE
T ss_pred             CCCEEEEEECCCCCE-----EEEEEEEccccCCCCCCCccHHHHHHhhccccccccccccCCcEeccccccccceeeccc
Confidence            566777777777776     8999999999999999999999999999998764332      88999999999999999


Q ss_pred             ccCCHHHHHHHHHH-------------------------HHH-HhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccc
Q 044668          111 LETYVPEMVELLTD-------------------------ISE-ATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISRL  163 (353)
Q Consensus       111 ~~~~l~~~l~ll~d-------------------------i~~-~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~i  163 (353)
                      ++++++.++++|++                         ++. ..++|...+.+.+++.+| +||||++..|++++|++|
T Consensus        83 l~~~~~~~l~ll~~~~~~p~~~~~~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~l~~~~~~~~p~g~~~~g~~~~i~~i  162 (213)
T d3cx5a1          83 LPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENL  162 (213)
T ss_dssp             CSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTC
T ss_pred             cchhhhHHHHHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhccccccccccccccHHHHHhh
Confidence            99999999999987                         112 235677889999999999 689999999999999999


Q ss_pred             CHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCC
Q 044668          164 NSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILT  210 (353)
Q Consensus       164 t~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~  210 (353)
                      +.+||++||++||.|+||+|+|+| +|+++++++++++|++||+++.|
T Consensus       163 t~~dl~~~~~~~y~p~n~~l~i~G~i~~~~~~~~ie~~f~~l~~~~~P  210 (213)
T d3cx5a1         163 VVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKP  210 (213)
T ss_dssp             CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCC
T ss_pred             hHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999999999999 99999999999999999876544
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure