Citrus Sinensis ID: 044680

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MESSVTVAKSSEFIKAEESKKENKNSGSKNKKVATVAAAVVDSGDGKNATTTGGAGAESSSVIKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Secondary Structure (PSIPRED)
ccccEEEEccHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccEEccccccccccccccccccccccEEEEEcccccEEEHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccHHEEHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccEEEEcccccccEEHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHcccccccccHHccc
Coil and Loop (DISEMBL)
MESSVTVAKSSEFIKAEEskkenknsgsknkKVATVAAAVVdsgdgknatttggagaessSVIKKtkkkkdsnrilvshtkkpfVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKrdglasnkevkistvnskkddegrfFQKAKIQIVLGKAEKLEKAVVAttapketsdtdmka
Flexible Loop (DISEMBL)
messvtvakssefikaeeskkenknsgsknkkvATVAAAvvdsgdgknatttggagaesssvikktkkkkdsnrilvshtkkpfvfyLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALkrdglasnkevkistvnskkddegrfFQKAKIQIVLgkaeklekavvattapketsdtdmka
Low Complexity Region (SEG)
MESSVTVAKSSEFIkaeeskkenknsgsknkkvatvaaavvDSGDGKNatttggagaESSSVIkktkkkkDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Disordered region (IsUnstruct)
**************************************************************************ILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGL*******************RFFQKAKIQIVLGKAEKL********************
Disordered Region (DISOPRED)
***********************************VAAAVVD**************************************KKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK*****************AKIQIVLGKAEKLE*******************
Disordered Region (DISEMBL)
*********************************ATVAAAVVDSG****************************NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVV***************
Disordered Region (DISPRO)
****VTVAKSSEFIKAEES********************V**S**************************KDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVAT*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESSVTVAKSSEFIKAEESKKENKNSGSKNKKVATVAAAVVDSGDGKNATTTGGAGAESSSVIKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
O22969	130	Uncharacterized protein A	no	no	0.598	0.838	0.532	3e-26

>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 79/109 (72%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRY++QYND+EL+ALGMAI TVVT+ E LK +G A  K++ 
Sbjct: 21  NRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIM 80

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMK 181
            STV+ K D  GR  QKAKI+I L K+EK ++ + A    KE ++  ++
Sbjct: 81  TSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQVQ 129

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
255561871	153	conserved hypothetical protein [Ricinus	0.609	0.725	0.582	2e-27
449443233	143	PREDICTED: uncharacterized protein At2g3	0.637	0.811	0.557	3e-27
225432947	144	PREDICTED: uncharacterized protein At2g3	0.483	0.611	0.659	1e-26
356533643	132	PREDICTED: uncharacterized protein At2g3	0.571	0.787	0.580	1e-26
297737173	131	unnamed protein product [Vitis vinifera]	0.483	0.671	0.659	1e-26
388512731	128	unknown [Lotus japonicus]	0.538	0.765	0.612	2e-26
224131218	148	predicted protein [Populus trichocarpa]	0.521	0.641	0.621	3e-26
297833146	164	nucleic acid binding protein [Arabidopsi	0.538	0.597	0.602	1e-25
226496151	146	uncharacterized protein LOC100275297 [Ze	0.653	0.815	0.508	2e-25
223974173	146	unknown [Zea mays] gi|413947520|gb|AFW80	0.631	0.787	0.525	2e-25

>gi|255561871|ref|XP_002521944.1| conserved hypothetical protein [Ricinus communis] gi|223538748|gb|EEF40348.1| conserved hypothetical protein [Ricinus communis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 88/115 (76%), Gaps = 4/115 (3%)

Query: 65  KTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDG 124
           +T++KK  NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGMAI TVVTIAE LK +G
Sbjct: 39  QTQQKK--NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNG 96

Query: 125 LASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVA--TTAPKETSD 177
           LA+ K+V  STV  K +++GR  QKAKI+IVLGK+EK +  + A  T    ET D
Sbjct: 97  LATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMEAANTATEAETQD 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443233|ref|XP_004139384.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] gi|449532210|ref|XP_004173075.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 91/122 (74%), Gaps = 6/122 (4%)

Query: 49  ATTTGGAGAESSSVIKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGM 108
           A T   +GA  ++   +T+KK   NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGM
Sbjct: 2   AATIAVSGATPAT---ETQKK---NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGM 55

Query: 109 AIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVA 168
           AI TVVTIAE LK +GLA+ K+V  STV  K +++GR  QKAKI+IVLGK+EK +  + A
Sbjct: 56  AITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 115

Query: 169 TT 170
            T
Sbjct: 116 AT 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432947|ref|XP_002280347.1| PREDICTED: uncharacterized protein At2g34160-like [Vitis vinifera]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 74/88 (84%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS++KKP  FY++LAKRYIKQYND+EL+ALGMAIP+VVTIAE LK++G+A+ K++ 
Sbjct: 29  NRIQVSNSKKPLFFYINLAKRYIKQYNDVELSALGMAIPSVVTIAEILKKNGVATQKKIL 88

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAE 160
            STV+ K +  GR  QKAKI+IVLGK E
Sbjct: 89  TSTVDMKWETNGRTVQKAKIEIVLGKPE 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533643|ref|XP_003535371.1| PREDICTED: uncharacterized protein At2g34160-like [Glycine max]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 84/105 (80%), Gaps = 1/105 (0%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+ K+V 
Sbjct: 19  NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKKVL 78

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSD 177
            STV  K +++GR  QKAKI+IVLGK++K +  +++  AP E+ +
Sbjct: 79  TSTVGMKDENKGRLVQKAKIEIVLGKSDKFDN-LMSPPAPTESEE 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737173|emb|CBI26374.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 74/88 (84%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS++KKP  FY++LAKRYIKQYND+EL+ALGMAIP+VVTIAE LK++G+A+ K++ 
Sbjct: 16  NRIQVSNSKKPLFFYINLAKRYIKQYNDVELSALGMAIPSVVTIAEILKKNGVATQKKIL 75

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAE 160
            STV+ K +  GR  QKAKI+IVLGK E
Sbjct: 76  TSTVDMKWETNGRTVQKAKIEIVLGKPE 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512731|gb|AFK44427.1| unknown [Lotus japonicus]

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+ K V 
Sbjct: 18  NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKRVL 77

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATT 170
            STV  K +++GR  QKAKI+IVLGK+EK +  +   T
Sbjct: 78  TSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMAPAT 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131218|ref|XP_002328484.1| predicted protein [Populus trichocarpa] gi|222838199|gb|EEE76564.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 79/95 (83%)

Query: 69  KKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASN 128
           ++ +NRI VS+TKKP  FY++LAKRY++QYN++EL+ALGMAI TVVTIAE LK +GLA+ 
Sbjct: 32  QQKNNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAITTVVTIAEILKNNGLATE 91

Query: 129 KEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLE 163
           K+V  STV  K +++GR  QKAKI+IVLGK+EK +
Sbjct: 92  KKVLTSTVCMKDENKGRQVQKAKIEIVLGKSEKFD 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833146|ref|XP_002884455.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330295|gb|EFH60714.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+ K+V 
Sbjct: 38  NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVL 97

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATT 170
            STV  K + +GR  QKAKI+IVLGK++K +  V   T
Sbjct: 98  TSTVGMKDETKGRMVQKAKIEIVLGKSDKFDSLVPPVT 135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496151|ref|NP_001142884.1| uncharacterized protein LOC100275297 [Zea mays] gi|195610952|gb|ACG27306.1| hypothetical protein [Zea mays]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 1/120 (0%)

Query: 47  KNATTTGGAGAESSSVIKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTAL 106
           KN T TG A A S    ++      SNRI VS+TKKP  FY++LAKRY++Q+ D+EL+AL
Sbjct: 11  KNLTVTGDAAA-SGGEGQRRGGGISSNRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSAL 69

Query: 107 GMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAV 166
           GMAI TVVT+AE LK +G A  K+++ STV+   +  GR FQKAKI+I+LGK+++ ++ +
Sbjct: 70  GMAIATVVTVAEILKNNGFAVEKKIRTSTVDINDESRGRPFQKAKIEIILGKSDRFDELM 129

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223974173|gb|ACN31274.1| unknown [Zea mays] gi|413947520|gb|AFW80169.1| hypothetical protein ZEAMMB73_176081 [Zea mays]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 47  KNATTTGGAGAESSSVIKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTAL 106
           KN T TG A A S    ++      SNRI VS+TKKP  FY++LAKRY++Q+ D+EL+AL
Sbjct: 11  KNLTVTGDAAA-SGGEGQRRGGGISSNRIQVSNTKKPLFFYVNLAKRYMQQHGDVELSAL 69

Query: 107 GMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKL 162
           GMAI TVVT+AE LK +G A  K+++ STV+   +  GR FQKAKI+I+LGK+++ 
Sbjct: 70  GMAIATVVTVAEILKNNGFAVEKKIRTSTVDINDESRGRPFQKAKIEIILGKSDRF 125

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2084873	164	DAN1 "D NUCLDUO1-ACTIVATEEIC A	0.604	0.670	0.539	4e-26
TAIR|locus:2029949	130	AT1G29250 [Arabidopsis thalian	0.576	0.807	0.552	1.1e-25
TAIR|locus:2055516	130	AT2G34160 [Arabidopsis thalian	0.598	0.838	0.532	1.8e-25

TAIR|locus:2084873 DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/113 (53%), Positives = 84/113 (74%)

Query:    73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
             NRI VS+TKKP  FY++LAKRYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+ K+V 
Sbjct:    38 NRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVL 97

Query:   133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATT---APKETSDTDMKA 182
              STV  K + +G+  QKAKI+IVLGK++K +  V   T    P+E +  + +A
Sbjct:    98 TSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEEASAETEA 150

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2029949 AT1G29250 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 58/105 (55%), Positives = 77/105 (73%)

Query:    73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
             NRI VS+TKKP  FY++LAKRY++QY D+EL+ALGMAI TVVT+AE LK +G A  K++ 
Sbjct:    21 NRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIM 80

Query:   133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSD 177
              STV+ K D  GR  QKAKI+I L K+EK ++ + A    KE ++
Sbjct:    81 TSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKEAAE 125

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2055516 AT2G34160 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/109 (53%), Positives = 79/109 (72%)

Query:    73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
             NRI VS+TKKP  FY++LAKRY++QYND+EL+ALGMAI TVVT+ E LK +G A  K++ 
Sbjct:    21 NRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIM 80

Query:   133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMK 181
              STV+ K D  GR  QKAKI+I L K+EK ++ + A    KE ++  ++
Sbjct:    81 TSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQVQ 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.324    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       139   0.00091  102 3  10 23  0.36    32
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  134 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.79u 0.16s 15.95t   Elapsed:  00:00:01
  Total cpu time:  15.79u 0.16s 15.95t   Elapsed:  00:00:01
  Start:  Fri May 10 05:35:08 2013   End:  Fri May 10 05:35:09 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00700039 hypothetical protein (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam01918	67	pfam01918, Alba, Alba	1e-04

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYI--KQYNDIELTALGMAIPTVVTIAEALKRDGLASNKE 130
           N I VS +K P + Y+  A + +     +++ L  LG AI   V++AE LKR  L    +
Sbjct: 1   NVIYVS-SKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQ 59

Query: 131 VKIST 135
           V + T
Sbjct: 60  VNVIT 64

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.88
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.85
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.83
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.39
KOG2567	179	consensus Uncharacterized conserved protein [Funct	99.29
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	98.05
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	83.42

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.88  E-value=3.3e-22  Score=151.08  Aligned_cols=86  Identities=31%  Similarity=0.420  Sum_probs=79.3

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc--ceeeEEEEeeEEecCCCCCccc
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL--ASNKEVKISTVNSKKDDEGRFF  147 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl--atikKI~TsTv~ied~~~GR~~  147 (182)
                      .+|.|+|..  ||.|+||.++.++|++ .++|.|+|+|+||++||+|||||+||.+  ..+++|.|+|..++++ +||.+
T Consensus         3 ~en~i~Ig~--kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~~~   79 (91)
T PRK04015          3 EENVVLVGK--KPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGRES   79 (91)
T ss_pred             CCCEEEEcC--CcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCcEE
Confidence            468999984  6999999999999996 9999999999999999999999999988  6799999999999885 79989


Q ss_pred             ceeeEEEEEeec
Q 044680          148 QKAKIQIVLGKA  159 (182)
Q Consensus       148 ~kaKIEIvL~Ks  159 (182)
                      ++++|||+|.|.
T Consensus        80 ~VS~IEI~l~k~   91 (91)
T PRK04015         80 NVSTIEIVLEKK   91 (91)
T ss_pred             EEEEEEEEEecC
Confidence            999999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.85  E-value=2.9e-21  Score=145.11  Aligned_cols=81  Identities=28%  Similarity=0.385  Sum_probs=75.4

Q ss_pred             EecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcce--eeEEEEeeEEecCCCCCcccceeeEE
Q 044680           77 VSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLAS--NKEVKISTVNSKKDDEGRFFQKAKIQ  153 (182)
Q Consensus        77 VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrglat--ikKI~TsTv~ied~~~GR~~~kaKIE  153 (182)
                      |..++||.|+||..+.++|++ .++|.|+|+|+||++||+|||+|++|.+..  +++|.++|..++.+ +||.+++++||
T Consensus         4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~~VStIE   82 (87)
T TIGR00285         4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREVNVSTIE   82 (87)
T ss_pred             EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCceeeEEEEE
Confidence            456899999999999999988 999999999999999999999999999866  99999999998875 79999999999


Q ss_pred             EEEee
Q 044680          154 IVLGK  158 (182)
Q Consensus       154 IvL~K  158 (182)
                      |+|.|
T Consensus        83 I~l~~   87 (87)
T TIGR00285        83 IVLAK   87 (87)
T ss_pred             EEEeC
Confidence            99975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.83  E-value=1.7e-20  Score=141.94  Aligned_cols=82  Identities=28%  Similarity=0.378  Sum_probs=75.8

Q ss_pred             EecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcce--eeEEEEeeEEecCCCCCcccceeeEE
Q 044680           77 VSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLAS--NKEVKISTVNSKKDDEGRFFQKAKIQ  153 (182)
Q Consensus        77 VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrglat--ikKI~TsTv~ied~~~GR~~~kaKIE  153 (182)
                      |..++||.|+||..+.++|++ .+||+|+|+|+|||+||++|||+++|++..  +++|.++|..++.+ +||.++++.||
T Consensus         7 V~vG~KPvmNYVlAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr~~~VS~Ie   85 (91)
T COG1581           7 VLVGKKPVMNYVLAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGRTRNVSTIE   85 (91)
T ss_pred             EEEcCcchHHHHHHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCceeeEEEEE
Confidence            445899999999999999999 999999999999999999999999999755  89999999999986 79999999999


Q ss_pred             EEEeec
Q 044680          154 IVLGKA  159 (182)
Q Consensus       154 IvL~Ks  159 (182)
                      |+|.|.
T Consensus        86 I~L~k~   91 (91)
T COG1581          86 IVLAKK   91 (91)
T ss_pred             EEEecC
Confidence            999873

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.39  E-value=1.4e-12  Score=90.78  Aligned_cols=52  Identities=31%  Similarity=0.430  Sum_probs=45.8

Q ss_pred             CeEEEecCCCchhhhHHHHHHHh-----hhCCeEEEeecccchhhHHHHHHhhhhcCc
Q 044680           73 NRILVSHTKKPFVFYLDLAKRYI-----KQYNDIELTALGMAIPTVVTIAEALKRDGL  125 (182)
Q Consensus        73 N~I~VS~~KKPl~fYV~lAK~lL-----q~~~EVeLsALG~AIstAV~VAEILKrrgl  125 (182)
                      |.|+|+. ++|.+.||..+..+|     ..+++|.|+|+|+||++||++|||||++..
T Consensus         1 n~I~V~~-~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~   57 (70)
T PF01918_consen    1 NEIYVSS-NSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFG   57 (70)
T ss_dssp             SEEEE-S-TS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTS
T ss_pred             CEEEECC-CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhc
Confidence            6789995 677789999999999     669999999999999999999999999954

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=5e-12  Score=105.38  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             ccccCCCCeEEEecCCCchhhhHHHHHHHhhh--CCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecCC--
Q 044680           66 TKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQ--YNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKD--  141 (182)
Q Consensus        66 ~~~~~~~N~I~VS~~KKPl~fYV~lAK~lLq~--~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied~--  141 (182)
                      .+-.-+.|+++|..+.|-+ ||+.+|..+|++  +..|++||+|+||+++|++|||||||--..++.+++++.+++|-  
T Consensus        12 ~d~pp~a~emrV~~g~kir-N~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~   90 (179)
T KOG2567|consen   12 PDLPPDANEMRVKSGSKIR-NLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWE   90 (179)
T ss_pred             ccCCCCcceEEEccCchHH-HHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhccc
Confidence            4445578999999999998 999999999999  99999999999999999999999999999999999999887761  


Q ss_pred             --CCCc-----ccceeeEEEEEeecc
Q 044680          142 --DEGR-----FFQKAKIQIVLGKAE  160 (182)
Q Consensus       142 --~~GR-----~~~kaKIEIvL~Ks~  160 (182)
                        .+|-     .++++-|-|+|.+.+
T Consensus        91 p~~eGl~pl~vtRhVp~l~IlLS~de  116 (179)
T KOG2567|consen   91 PTEEGLEPLEVTRHVPMLHILLSLDE  116 (179)
T ss_pred             ccccCccceEEeeccceEEEEEeccc
Confidence              1333     489999999999854

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=98.05  E-value=1.5e-05  Score=64.33  Aligned_cols=67  Identities=22%  Similarity=0.369  Sum_probs=50.3

Q ss_pred             CCeEEEecCCCchhhhHHHHHHHhhh---C------------------------------CeEEEeecccchhhHHHHHH
Q 044680           72 SNRILVSHTKKPFVFYLDLAKRYIKQ---Y------------------------------NDIELTALGMAIPTVVTIAE  118 (182)
Q Consensus        72 ~N~I~VS~~KKPl~fYV~lAK~lLq~---~------------------------------~EVeLsALG~AIstAV~VAE  118 (182)
                      ++.|-|| .+.|+|.+|.=+..||.+   +                              .+|.|+|||+||.+|+.+|-
T Consensus         3 ~~~iyVs-s~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~   81 (144)
T PF12328_consen    3 PKVIYVS-SKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL   81 (144)
T ss_dssp             TTEEE---SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred             CcEEEEe-cCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence            5677888 788988888888777765   3                              69999999999999999999


Q ss_pred             hhhhcCcceeeEEEEeeEEecC
Q 044680          119 ALKRDGLASNKEVKISTVNSKK  140 (182)
Q Consensus       119 ILKrrglatikKI~TsTv~ied  140 (182)
                      -++++. ...-.|+|+|+.+-|
T Consensus        82 ~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   82 WFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             HHHHTT----EEEEEEEEEEEE
T ss_pred             HHhhcC-CeEEEEEeceEEEEE
Confidence            998886 556688999986544

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=83.42  E-value=7.7  Score=29.46  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CeEEEecCCCchhhhHHHHHHHhhhCCeEEEeeccc-chhhHHHHHHhh
Q 044680           73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGM-AIPTVVTIAEAL  120 (182)
Q Consensus        73 N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~-AIstAV~VAEIL  120 (182)
                      +.+.||.+.+|. ...-..-..|.+++.|+|.|+|- |++.||...-|-
T Consensus         2 e~LKVSs~S~p~-~vAgAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiA   49 (86)
T PF04232_consen    2 EVLKVSSKSNPN-AVAGAIAGVLREGGKVELQAIGAGAVNQAVKAIAIA   49 (86)
T ss_dssp             -EEEE-TT--HH-HHHHHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHH-HHHHHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHH
Confidence            468999999997 56666677788999999999998 899988887776

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
1vm0_A	130	X-Ray Structure Of Gene Product From Arabidopsis Th		8e-26

>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g34160 Length = 130

Iteration: 1
 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRY +QYND+EL+ALG AI TVVT+ E LK +G A  K++ 
Sbjct: 21  NRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIX 80
Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMK 181
            S V+ K D  GR  QKAKI+I L K+EK ++   A    KE ++T ++
Sbjct: 81  TSIVDIKDDARGRPVQKAKIEITLVKSEKFDELXAAANEEKEDAETQVQ 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
1vm0_A	130	Unknown protein; structural genomics, protein stru	3e-21

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score = 83.4 bits (205), Expect = 3e-21
 Identities = 58/120 (48%), Positives = 81/120 (67%)

Query: 63  IKKTKKKKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKR 122
           +      +  NRI VS+TKKP  FY++LAKRY++QYND+EL+ALGMAI TVVT+ E LK 
Sbjct: 11  MNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKN 70

Query: 123 DGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA 182
           +G A  K++  S V+ K D  GR  QKAKI+I L K+EK ++ + A    KE ++T ++ 
Sbjct: 71  NGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAETQVQN 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
1vm0_A	130	Unknown protein; structural genomics, protein stru	100.0
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.89
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.89
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.88
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.85
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.85
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.79
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	97.83
2ek0_A	90	Stage V sporulation protein S (spovs) related Pro;	82.65

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=100.00  E-value=1.8e-37  Score=245.24  Aligned_cols=111  Identities=52%  Similarity=0.783  Sum_probs=91.8

Q ss_pred             cCCCCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecCCCCCcccc
Q 044680           69 KKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQ  148 (182)
Q Consensus        69 ~~~~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied~~~GR~~~  148 (182)
                      .+++|+|+|+.+|+|+||||+++++||+.|++|+|||||+||++||+||||||||+++++++|.|+|++++++..||+.+
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v~   96 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQ   96 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEE
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCcccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999876789899


Q ss_pred             eeeEEEEEeeccchHHHHhhccCCCCCCCcc
Q 044680          149 KAKIQIVLGKAEKLEKAVVATTAPKETSDTD  179 (182)
Q Consensus       149 kaKIEIvL~Ks~dFd~~~~~~~~~~e~~~~~  179 (182)
                      +|||||+|.|+++||++|+++++++|+.+.+
T Consensus        97 ~skIEI~L~k~~~fd~~~~~~~~~~~~~~~~  127 (130)
T 1vm0_A           97 KAKIEITLVKSEKFDELMAAANEEKEDAETQ  127 (130)
T ss_dssp             EEEEEEEEEECTTHHHHHHHC----------
T ss_pred             cceEEEEEEecCcHHHHHHHhhhhhcccccc
Confidence            9999999999999999999999999987664

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.89  E-value=2.7e-23  Score=153.79  Aligned_cols=85  Identities=27%  Similarity=0.397  Sum_probs=77.2

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc-e-eeEEEEeeEEecCCCCCccc
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA-S-NKEVKISTVNSKKDDEGRFF  147 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla-t-ikKI~TsTv~ied~~~GR~~  147 (182)
                      .+|.|+|.  +||.|+||.++.++|++ +++|+|+|+|+||++||+||||||+|+++ . +++|+|+|++++++ +||.+
T Consensus         2 ~~n~I~V~--~k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r   78 (89)
T 1nfj_A            2 AEHVVYVG--NKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS   78 (89)
T ss_dssp             -CEEEECC--SSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred             CCCEEEEc--CCCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence            36888887  58899999999999998 99999999999999999999999999964 3 59999999999886 69999


Q ss_pred             ceeeEEEEEee
Q 044680          148 QKAKIQIVLGK  158 (182)
Q Consensus       148 ~kaKIEIvL~K  158 (182)
                      ++|.|+|+|.|
T Consensus        79 ~vs~IeI~L~k   89 (89)
T 1nfj_A           79 NVSTIEIVLAK   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999986

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.89  E-value=6.9e-23  Score=151.07  Aligned_cols=84  Identities=26%  Similarity=0.395  Sum_probs=71.1

Q ss_pred             CCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCcc-e-eeEEEEeeEEecCCCCCcccce
Q 044680           72 SNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLA-S-NKEVKISTVNSKKDDEGRFFQK  149 (182)
Q Consensus        72 ~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrgla-t-ikKI~TsTv~ied~~~GR~~~k  149 (182)
                      +|.|+|..+  |.|+||.++.++|++.++|+|+|+|+||++||+||||||+|+++ . +++|+|+|+.++++ +||.+++
T Consensus         2 ~n~I~V~~k--~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v   78 (87)
T 1nh9_A            2 DNVVLIGKK--PVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEECSS--CHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEeCc--chHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence            588888744  99999999999999999999999999999999999999999965 3 59999999999986 6999999


Q ss_pred             eeEEEEEee
Q 044680          150 AKIQIVLGK  158 (182)
Q Consensus       150 aKIEIvL~K  158 (182)
                      |.|||+|.|
T Consensus        79 S~IeI~L~k   87 (87)
T 1nh9_A           79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999985

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.88  E-value=1.2e-22  Score=152.67  Aligned_cols=86  Identities=28%  Similarity=0.387  Sum_probs=78.4

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc--e-eeEEEEeeEEecCCCCCcc
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--S-NKEVKISTVNSKKDDEGRF  146 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla--t-ikKI~TsTv~ied~~~GR~  146 (182)
                      .+|.|+|.  +||+|+||.++.++|++ +++|+|+|+|+||++||+||||||||+++  . +++|+|+|++++++ +|+.
T Consensus         8 ~~n~I~V~--~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G~~   84 (97)
T 2bky_A            8 PSNVVLIG--KKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQ   84 (97)
T ss_dssp             -CCEEECC--SSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCE
T ss_pred             CCCEEEEc--CcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CCcE
Confidence            46888775  77899999999999998 99999999999999999999999999987  4 79999999999886 6999


Q ss_pred             cceeeEEEEEeec
Q 044680          147 FQKAKIQIVLGKA  159 (182)
Q Consensus       147 ~~kaKIEIvL~Ks  159 (182)
                      ++++.|+|+|.|.
T Consensus        85 r~vS~IeI~L~k~   97 (97)
T 2bky_A           85 SRVSTIEIAIRKK   97 (97)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             EEeeEEEEEEEcC
Confidence            9999999999874

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.85  E-value=5.1e-21  Score=143.28  Aligned_cols=81  Identities=25%  Similarity=0.299  Sum_probs=75.4

Q ss_pred             EecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc--ceeeEEEEeeEEecCCCCCcccceeeEE
Q 044680           77 VSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL--ASNKEVKISTVNSKKDDEGRFFQKAKIQ  153 (182)
Q Consensus        77 VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl--atikKI~TsTv~ied~~~GR~~~kaKIE  153 (182)
                      |..++||.|+||.++..+|++ +++|+|+|+|+||++||+||||||+|.+  ..+++|.++|..++.+ +|+.++++.||
T Consensus         7 v~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~~r~VS~Ie   85 (91)
T 3toe_A            7 VYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGTATNVSAIE   85 (91)
T ss_dssp             EECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSSEEEEEEEE
T ss_pred             EEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCceeEeeEEE
Confidence            556899999999999999986 9999999999999999999999999988  6688999999999875 79999999999


Q ss_pred             EEEee
Q 044680          154 IVLGK  158 (182)
Q Consensus       154 IvL~K  158 (182)
                      |+|.|
T Consensus        86 I~L~k   90 (91)
T 3toe_A           86 IQLRK   90 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99987

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.85  E-value=4.1e-21  Score=145.54  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=78.0

Q ss_pred             CCeEEEecCCCchhhhHHHHH-HHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc-cee-eEEEEeeEEecCCC-CCc-
Q 044680           72 SNRILVSHTKKPFVFYLDLAK-RYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL-ASN-KEVKISTVNSKKDD-EGR-  145 (182)
Q Consensus        72 ~N~I~VS~~KKPl~fYV~lAK-~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl-ati-kKI~TsTv~ied~~-~GR-  145 (182)
                      +|.|+|  ++||.|+||.++. ++|++ +++|+|+|+|+||++||+||||||||++ +.+ ++|+|+|+.++++- +|+ 
T Consensus         6 ~n~I~V--~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~   83 (102)
T 2h9u_A            6 APEVRI--GRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT   83 (102)
T ss_dssp             CCEEEC--CSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred             CCEEEE--cCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence            577776  5778899999999 99988 9999999999999999999999999995 555 99999999988741 577 


Q ss_pred             -ccceeeEEEEEeeccc
Q 044680          146 -FFQKAKIQIVLGKAEK  161 (182)
Q Consensus       146 -~~~kaKIEIvL~Ks~d  161 (182)
                       .+++|.|+|+|.|.|.
T Consensus        84 ~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           84 RTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             EEEEEEEEEEEEEECSS
T ss_pred             ceeEeeeEEEEEEccCC
Confidence             7999999999999874

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.79  E-value=3.8e-19  Score=132.06  Aligned_cols=82  Identities=15%  Similarity=0.039  Sum_probs=70.8

Q ss_pred             CCCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc--eeeEEEEeeEEecCCCCCcc
Q 044680           70 KDSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--SNKEVKISTVNSKKDDEGRF  146 (182)
Q Consensus        70 ~~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla--tikKI~TsTv~ied~~~GR~  146 (182)
                      +++|.|.|  +++|.|+||.++..+|++ .++|+|+|+|+||++||+|||||++|.+.  .+++|.++++.      |+.
T Consensus         4 ~~~~iv~v--g~kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~~   75 (89)
T 2bky_X            4 KLNEIVVR--KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDR   75 (89)
T ss_dssp             CCEEEECC--TTSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETT
T ss_pred             CCCCEEEE--CCCCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Ccc
Confidence            44555554  456999999999999998 89999999999999999999999999874  58889999876      566


Q ss_pred             cceeeEEEEEeec
Q 044680          147 FQKAKIQIVLGKA  159 (182)
Q Consensus       147 ~~kaKIEIvL~Ks  159 (182)
                      +++|.|+|+|.|.
T Consensus        76 r~VS~IeI~L~k~   88 (89)
T 2bky_X           76 RRISYILLRLKRV   88 (89)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             eEeeeEEEEEEec
Confidence            8999999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00011  Score=58.86  Aligned_cols=68  Identities=15%  Similarity=0.282  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhh-----CCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecC
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-----YNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKK  140 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-----~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied  140 (182)
                      .+|.|-|+ .+-|++.=+.=+..||.+     ..+|.|+|||.||.+|+.+|=-+++++ ...-.|+|+|+.+-|
T Consensus        29 ~~~~iYV~-skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V~T~TV~vvD  101 (140)
T 3iab_B           29 IHTTIFVK-STTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEVYTKTIEVLD  101 (140)
T ss_dssp             HTTEEECC-SSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEE
T ss_pred             cCceEEEe-cCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEEEeceEEEEE
Confidence            37788888 678866666666778886     799999999999999999999999875 355569999986544

>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A

Probab=82.65  E-value=3.4  Score=30.78  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             CeEEEecCCCchhhhHHHHHHHhhhCCeEEEeeccc-chhhHHHHHHhhhhcCcceeeEEEEee----EEecCCCCCccc
Q 044680           73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGM-AIPTVVTIAEALKRDGLASNKEVKIST----VNSKKDDEGRFF  147 (182)
Q Consensus        73 N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~-AIstAV~VAEILKrrglatikKI~TsT----v~ied~~~GR~~  147 (182)
                      ..+.||.+.+|. ...-..--.|.+.+.|+|.|.|- |++.||...-|-  |++..-..+....    .+++-  +|+.+
T Consensus         2 e~LKVSs~S~P~-~VAGAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIA--Rg~l~~~g~Dl~~~PaF~~v~i--dge~r   76 (90)
T 2ek0_A            2 ETLRVSSKSRPN-SVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIA--RGYIAPDNLDLVVKPAFVKLEL--ENEER   76 (90)
T ss_dssp             CEEEECTTCCHH-HHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHH--HHHHGGGTEEEEEEEEEEEEEE--TTEEE
T ss_pred             ceEEEcCCCChH-HHHHHHHHHHhcCCceEEEEECHHHHHHHHHHHHHH--HHhhcccCceEEEeeeeEEEee--CCeEE
Confidence            368999999997 56666677888999999999998 999998877665  2332222233222    22222  35555


Q ss_pred             ceeeEEEEEee
Q 044680          148 QKAKIQIVLGK  158 (182)
Q Consensus       148 ~kaKIEIvL~K  158 (182)
                      .--++.+...+
T Consensus        77 Taik~~v~~r~   87 (90)
T 2ek0_A           77 TALKFSIKAHP   87 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEec
Confidence            66666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	2e-21
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	3e-09
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	8e-07

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.8 bits (202), Expect = 2e-21
 Identities = 54/92 (58%), Positives = 69/92 (75%)

Query: 72  SNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEV 131
            NRI VS+TKKP  FY++LAKRY++QYND+EL+ALGMAI TVVT+ E LK +G A  K++
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKI 61

Query: 132 KISTVNSKKDDEGRFFQKAKIQIVLGKAEKLE 163
             S V+ K D  GR  QKAKI+I L K+EK +
Sbjct: 62  MTSIVDIKDDARGRPVQKAKIEITLVKSEKFD 93

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 80  TKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKR--DGLASNKEVKISTVN 137
            KKP + Y+      +   +++ + A G AI   V +AE ++         K+++I T  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTD- 66

Query: 138 SKKDDEGRFFQKAKIQIVLGK 158
             K+ +GR    + I+IVL K
Sbjct: 67  KVKNPDGREVNVSTIEIVLAK 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.2 bits (102), Expect = 8e-07
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 80  TKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLASNK--EVKISTV 136
             KP + Y+      + +  +++ + A G AI   V +AE ++   +   K  E+KI T 
Sbjct: 7   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 66

Query: 137 NSKKDDEGRFFQKAKIQIVLGK 158
              + ++GR    + I+IVL K
Sbjct: 67  -ELESEQGRRSNVSTIEIVLAK 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	100.0
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.89
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.88
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.84
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.81

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.3e-36  Score=225.11  Aligned_cols=99  Identities=56%  Similarity=0.826  Sum_probs=90.6

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecCCCCCccccee
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKA  150 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied~~~GR~~~ka  150 (182)
                      ++|+|+||++|||+||||+++++||+++++|+|+|||+||++||+|||||+||+++++++|+|++.+++++.+||+++++
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~~gr~~~vs   80 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKA   80 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEE
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCCCCcccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999987789999999


Q ss_pred             eEEEEEeeccchHHHHhhc
Q 044680          151 KIQIVLGKAEKLEKAVVAT  169 (182)
Q Consensus       151 KIEIvL~Ks~dFd~~~~~~  169 (182)
                      +|||+|.|+|+||++|+++
T Consensus        81 ~IEI~L~K~~~F~~~~~~~   99 (99)
T d1vm0a_          81 KIEITLVKSEKFDELMAAA   99 (99)
T ss_dssp             EEEEEEEECTTHHHHHHHC
T ss_pred             eEEEEEeeCccHHHHhhcC
Confidence            9999999999999999864

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=1.1e-23  Score=154.69  Aligned_cols=84  Identities=29%  Similarity=0.418  Sum_probs=70.7

Q ss_pred             CCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCc--ceeeEEEEeeEEecCCCCCcccce
Q 044680           72 SNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNKEVKISTVNSKKDDEGRFFQK  149 (182)
Q Consensus        72 ~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrgl--atikKI~TsTv~ied~~~GR~~~k  149 (182)
                      +|.|.|  ++||+|+||.++.++|++.++|+|+|+|+||++||+|||||+||.+  ..+++|.+++.+++.+ +|+.+++
T Consensus         2 en~I~I--g~KP~m~YV~~~~~~~~~~~eV~lKArG~aIsrAVdVaEiik~R~~~~~~i~~i~i~se~~~~~-~g~~r~V   78 (87)
T d1nh9a_           2 DNVVLI--GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEE--CSSCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEE--cCCCHHHHHHHHHHHhccCCeEEEEEcchhhhHHHHHHHHHHHhccCCeEEEEEEecceEEecC-CCceeEE
Confidence            466666  7999999999999999999999999999999999999999999753  4699999999998875 7899999


Q ss_pred             eeEEEEEee
Q 044680          150 AKIQIVLGK  158 (182)
Q Consensus       150 aKIEIvL~K  158 (182)
                      +.|||+|.|
T Consensus        79 S~IeI~L~k   87 (87)
T d1nh9a_          79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999986

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=9e-23  Score=149.54  Aligned_cols=83  Identities=28%  Similarity=0.405  Sum_probs=73.7

Q ss_pred             CeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc--ceeeEEEEeeEEecCCCCCcccce
Q 044680           73 NRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL--ASNKEVKISTVNSKKDDEGRFFQK  149 (182)
Q Consensus        73 N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl--atikKI~TsTv~ied~~~GR~~~k  149 (182)
                      |.|.|  ++||+|+||++++++|++ .++|+|+|+|+||++||+|||||+||.+  ..+++|.+++.+.+.+ +||.+++
T Consensus         2 n~I~I--g~Kp~~~YV~~~~~~l~~g~~eV~ikArG~aIs~AVdVaEi~k~r~~~~~~i~~i~i~se~~~~e-~g~~r~V   78 (87)
T d1nfja_           2 HVVYV--GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRSNV   78 (87)
T ss_dssp             EEEEC--CSSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCCEE
T ss_pred             CEEEE--cCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEEccEEEecC-CCceeEE
Confidence            44444  678999999999999987 8999999999999999999999999854  3588999999998875 7898999


Q ss_pred             eeEEEEEee
Q 044680          150 AKIQIVLGK  158 (182)
Q Consensus       150 aKIEIvL~K  158 (182)
                      ++|||+|.|
T Consensus        79 S~IeI~L~K   87 (87)
T d1nfja_          79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999986

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.84  E-value=2.9e-21  Score=142.36  Aligned_cols=82  Identities=27%  Similarity=0.351  Sum_probs=74.5

Q ss_pred             EecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcce---eeEEEEeeEEecCCCCCcccceeeE
Q 044680           77 VSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLAS---NKEVKISTVNSKKDDEGRFFQKAKI  152 (182)
Q Consensus        77 VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrglat---ikKI~TsTv~ied~~~GR~~~kaKI  152 (182)
                      |..++||+|+||.++..+|++ .++|.|+|+|+||++||+|||+++||++..   +++|.+++++++.+ +|+.++++.|
T Consensus         4 I~IG~Kp~mnYV~a~~~~l~~g~~~V~iKArG~aIskAVdVaEiik~R~l~~~~~i~~i~I~se~~~~~-~G~~r~VS~I   82 (89)
T d2bkya1           4 VLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQSRVSTI   82 (89)
T ss_dssp             EECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCEEEEEEE
T ss_pred             EEECCCcHHHHHHHHHHHHhCCCCeEEEEEehhhhHHHHHHHHHHHHhcccCceEEEEEEeccEEeecC-CCcEEEEEEE
Confidence            344699999999999999987 899999999999999999999999998654   79999999998875 7999999999


Q ss_pred             EEEEeec
Q 044680          153 QIVLGKA  159 (182)
Q Consensus       153 EIvL~Ks  159 (182)
                      ||.|.|.
T Consensus        83 eI~L~kk   89 (89)
T d2bkya1          83 EIAIRKK   89 (89)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999873

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.81  E-value=3.4e-20  Score=136.13  Aligned_cols=82  Identities=17%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc--eeeEEEEeeEEecCCCCCccc
Q 044680           71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--SNKEVKISTVNSKKDDEGRFF  147 (182)
Q Consensus        71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla--tikKI~TsTv~ied~~~GR~~  147 (182)
                      ++|+|++. ++||.|+||.++..+|++ .++|.|+|+|+||++||+|||+|++|.+.  .+++|.++|++      |+.+
T Consensus         1 k~nei~~~-~~kp~~nYV~a~i~~f~~g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~sE~------~~~r   73 (86)
T d2bkyx1           1 KLNEIVVR-KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRR   73 (86)
T ss_dssp             CCEEEECC-TTSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTE
T ss_pred             CCceEEEE-cCCchHHHHHHHHHHHHCCCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecccc------CCce
Confidence            46888887 778999999999999977 99999999999999999999999999644  47788888763      5668


Q ss_pred             ceeeEEEEEeec
Q 044680          148 QKAKIQIVLGKA  159 (182)
Q Consensus       148 ~kaKIEIvL~Ks  159 (182)
                      ++|.|||.|.|.
T Consensus        74 ~VS~IeI~l~k~   85 (86)
T d2bkyx1          74 RISYILLRLKRV   85 (86)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEec
Confidence            999999999984