Citrus Sinensis ID: 044682
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.904 | 0.902 | 0.388 | 1e-138 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.964 | 0.939 | 0.383 | 1e-134 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.879 | 0.908 | 0.379 | 1e-127 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.890 | 0.897 | 0.362 | 1e-119 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.733 | 0.687 | 0.245 | 4e-26 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.659 | 0.253 | 0.252 | 7e-08 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.666 | 0.264 | 0.250 | 1e-07 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | no | no | 0.452 | 0.293 | 0.272 | 3e-07 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.666 | 0.264 | 0.250 | 3e-07 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | no | no | 0.452 | 0.292 | 0.270 | 9e-07 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 295/759 (38%), Positives = 435/759 (57%), Gaps = 76/759 (10%)
Query: 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAA 82
+ +YIV++ + + P++ D+ H N+ S S+ + + + +Y I+GF+
Sbjct: 29 QGTYIVHM---AKSQMPSSFDL------HSNWYDSSLRSISDSAELLY-TYENAIHGFST 78
Query: 83 ILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEK--DNVISQNSAWNKGRFGED 140
L +E A L P V+S+ + ++ TTR+ FLGL++ ++ + +++ D
Sbjct: 79 RLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYS------D 132
Query: 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQ-CNRKLIGMRYYNQGQIE 199
V++GV+D+GVWPESKS+SDEG GP+P W+G C+ T++ CNRKLIG R++
Sbjct: 133 VVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFF------ 186
Query: 200 HARAQNSSFYP---TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRA 256
AR S+ P + E + RD DGHGTH +STA G+ V S+ G GTA+G +PRA
Sbjct: 187 -ARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRA 245
Query: 257 RLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIG 316
R+A YK CW + G C SDIL+A D AI D V+VLS+SLG ++Y++D +AIG
Sbjct: 246 RVAVYKVCW-LGG----CFSSDILAAIDKAIADNVNVLSMSLG---GGMSDYYRDGVAIG 297
Query: 317 SFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK--E 374
+F AM GILV +AGN GP ++ N+APW+ TVGA T+DR+F + LG+ + F
Sbjct: 298 AFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVS 357
Query: 375 IMQGPLTQHSMI-------------GNLECNPGAIDPKKINGKILLCMNHTHG-IDKSQL 420
+ +G ++ GNL C G + P+K+ GKI++C + + K +
Sbjct: 358 LFKGEALPDKLLPFIYAGNASNATNGNL-CMTGTLIPEKVKGKIVMCDRGINARVQKGDV 416
Query: 421 AAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKT 480
AG G+IL N E + + LP + V I Y + NP AS+S + T
Sbjct: 417 VKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGT 476
Query: 481 EFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFN 540
KPSP + FSSRGP++I PNI+KPD+ APGV I+AA++ A P+ SD RR+ FN
Sbjct: 477 VVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFN 536
Query: 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATP 600
GTSMS PH+SG+A LLK++HP+WSPAAI+SA+MTTA T GK + G +TP
Sbjct: 537 IISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTP 596
Query: 601 FEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSC-------- 652
F++GAGHV+P +A +PGL+YDL+ DYL ++C+ N+T+P+I S
Sbjct: 597 FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCAL--------NYTSPQIRSVSRRNYTCD 648
Query: 653 -PKSFSILDFNYPTIAI-PDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNL 710
KS+S+ D NYP+ A+ D + TR V +VG + GV + VEP L
Sbjct: 649 PSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVL 708
Query: 711 SFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
+F E E++++ VTFT + + KP FG + WSD
Sbjct: 709 NFKEANEKKSYTVTFTVDSS---KPSGSNS-FGSIEWSD 743
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 299/779 (38%), Positives = 427/779 (54%), Gaps = 51/779 (6%)
Query: 6 LYVLVLFSLLLTPT--FAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVK 63
++ ++F L + + K++YIV L H + TA + H +FL V+
Sbjct: 6 FFLCIIFLLFCSSSSEILQKQTYIVQL----HPNSETAKTFASKFDWHLSFLQEAVLGVE 61
Query: 64 KARDSISC----SYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLG 119
+ + S SYG I GFAA L E A+ L PEV+++ D +VQTT S+ FLG
Sbjct: 62 EEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLG 121
Query: 120 LEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHY 179
L+ + W+K RFG+ IIGV+D+GVWPES SF D GM +P +W+GICQ +
Sbjct: 122 LDG---FGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESF 178
Query: 180 GFQ-CNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVAN 238
CNRKLIG R++ +G + S P E+ +ARD GHGTH AST G+ V+
Sbjct: 179 SSSSCNRKLIGARFFIRGHRVANSPEESPNMPR-EYISARDSTGHGTHTASTVGGSSVSM 237
Query: 239 VSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL 298
+V GNG G A+G +P A +A YK CW NG C SDIL+A D AI D VDVLS+SL
Sbjct: 238 ANVLGNGAGVARGMAPGAHIAVYKVCW-FNG----CYSSDILAAIDVAIQDKVDVLSLSL 292
Query: 299 GEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDR 358
G + D IAIG+F AM GI V+ AAGN GP +V N APW+ T+GA T+DR
Sbjct: 293 G---GFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDR 349
Query: 359 EFTSYVTLGDEQIF---------------KEIMQGPLTQHSMIGNLECNPGAIDPKKING 403
F + V L + ++ +E+ +T G+ C G++ ++I G
Sbjct: 350 RFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDK-GSEFCLRGSLPREEIRG 408
Query: 404 KILLCMNHTHG-IDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSII 462
K+++C +G +K + +AG +IL N + + E + LP +L+ + ++ +
Sbjct: 409 KMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLK 468
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
AY N+ P A + T +P++ FS+RGPS NP+I+KPD+ APGV IIAA+
Sbjct: 469 AYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWP 528
Query: 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582
+ + P+ P D RR+ F GTSMS PH+SGI L+++ +P+WSPAAIKSA+MTTA
Sbjct: 529 QNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLY 588
Query: 583 DHTGKNPITDYDGLK-ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSII 641
D GK DG K A F GAGHVNP A++PGLVY++ DY++Y+C+ G+ +S I
Sbjct: 589 DRQGK---AIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDI 645
Query: 642 NNFTTPEIHSCPKSFSI---LDFNYPTIAIPDLNESVT--ITRRVKNVGTHNSSYEANVE 696
T + SC NYP+IA+ T ITRRV NVG+ NS Y NV+
Sbjct: 646 LAITHKNV-SCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVK 704
Query: 697 GVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSDGLHH 755
+G+ V+V P L F + +++V F ++ K + G+L W +S L
Sbjct: 705 APEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKK-NRGGKVASFAQGQLTWVNSHNLMQ 762
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 418/761 (54%), Gaps = 97/761 (12%)
Query: 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFA 81
K YIVY+G +D + A HH L GS A +S+ +Y R NGFA
Sbjct: 30 GKNIYIVYMGRK-------LEDPDSAHLHHRAMLEQVVGSTF-APESVLHTYKRSFNGFA 81
Query: 82 AILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDV 141
L EE A+++A V+S+FL+E ++ TTRSWDFLG + + + ++
Sbjct: 82 VKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPL-------TVPRRSQVESNI 134
Query: 142 IIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHA 201
++GV+D+G+WPES SF DEG P P +W+G C+ T F+CNRK+IG R Y+ G+
Sbjct: 135 VVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCE--TSNNFRCNRKIIGARSYHIGRPISP 192
Query: 202 RAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASY 261
N RD +GHGTH ASTA G V+ +++G G GTA+GG P AR+A+Y
Sbjct: 193 GDVNG----------PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAY 242
Query: 262 KSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG--EPSHKNTEYFKDAIAIGSFH 319
K CWN C D+DIL+A+DDAI DGVD++S+S+G P H YF DAIAIGSFH
Sbjct: 243 KVCWNDG-----CSDTDILAAYDDAIADGVDIISLSVGGANPRH----YFVDAIAIGSFH 293
Query: 320 AMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI---- 375
A+ GIL +AGN GP T +L+PWLL+V ASTMDR+F + V +G+ Q F+ +
Sbjct: 294 AVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT 353
Query: 376 ---MQGPLTQHSMIGNLE--------CNPGAIDPKKINGKILLCMNH--THGIDKSQLAA 422
PL I N C +++P + GKI++C H KS
Sbjct: 354 FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKS---- 409
Query: 423 QAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEF 482
GAAG+++ + + +S P LP+S+++ +D + + Y SI++P A++ T
Sbjct: 410 LDGAAGVLMTSNTRDYADSYP----LPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 465
Query: 483 NTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSD--DRRIPFN 540
N +P + FSSRGP+ ++IKPDI+ PGVEI+AA+ PS +P R FN
Sbjct: 466 NAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-----PSVAPVGGIRRNTLFN 519
Query: 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATP 600
GTSMS PHI+GIA +KT +P WSPAAIKSA+MTTA+ + NP +
Sbjct: 520 IISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR-FNPQAE-------- 570
Query: 601 FEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPK--SFSI 658
F YG+GHVNP A+ PGLVYD + DY+ ++C +GYN + T + +C + +
Sbjct: 571 FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG-DYSACTSGNTGRV 629
Query: 659 LDFNYPTIAI---PDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEY 715
D NYP+ + P + R + +V S+Y A + G+++ V PN LSF
Sbjct: 630 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGL 689
Query: 716 GEERTFKVTFTPERNVEPKPKAEKYIF-GKLIWSDSDGLHH 755
G+ ++F +T + + ++ L+W SDG+H+
Sbjct: 690 GDRKSFTLTV--------RGSIKGFVVSASLVW--SDGVHY 720
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 272/751 (36%), Positives = 403/751 (53%), Gaps = 79/751 (10%)
Query: 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFA 81
AK YI+YLG D+ H N L S S ++A++ SY + N FA
Sbjct: 34 AKDFYIIYLGDR-------PDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFA 86
Query: 82 AILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDV 141
A L A+++ + EV+S+ ++ RK+ TT+SWDF+GL +A + DV
Sbjct: 87 AKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPL-------TAKRHLKAERDV 139
Query: 142 IIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHA 201
IIGV+D+G+ P+S+SF D G+GP P +W+G C ++ CN K+IG +Y+
Sbjct: 140 IIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNF-TGCNNKIIGAKYF-------- 190
Query: 202 RAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASY 261
++ P E + D+DGHGTH +ST G VAN S++G GTA+G P ARLA Y
Sbjct: 191 --KHDGNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMY 248
Query: 262 KSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAM 321
K CW +G C D DIL+ F+ AIHDGV+++S+S+ +Y D+I++GSFHAM
Sbjct: 249 KVCWARSG----CADMDILAGFEAAIHDGVEIISISI---GGPIADYSSDSISVGSFHAM 301
Query: 322 MHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI---MQG 378
GIL VA+AGN+GP TV N PW+LTV AS +DR F S + LG+ + F + M
Sbjct: 302 RKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFS 361
Query: 379 PLTQ-HSMIGNLE-------------CNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQA 424
P + + ++ ++ C ++D KK+ GK+++C G++ +
Sbjct: 362 PKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVEST--IKSY 419
Query: 425 GAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNT 484
G AG I+V+ + L+N + + P + V I Y NS ++ A + KT T
Sbjct: 420 GGAGAIIVSDQYLDNAQI---FMAPATSVNSSVGDIIYRYINSTRSASAVIQ--KTRQVT 474
Query: 485 KPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFG 544
P+P + FSSRGP+ + ++KPDI APG++I+AA++ + + D + F G
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 545 TSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604
TSM+ PH++G+A +K+ HPDW+PAAIKSAI+T+A PI+ K F YG
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA--------KPISRRVN-KDAEFAYG 585
Query: 605 AGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSIL---DF 661
G +NP A PGLVYD+ Y+ ++C GYN + + SC L
Sbjct: 586 GGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSL 645
Query: 662 NYPTIAIPDLNESVTIT-----RRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYG 716
NYPTI + L + T T RRV NVG +S Y A V GV + VEP +LSF++
Sbjct: 646 NYPTIQL-TLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKAS 704
Query: 717 EERTFKVTFTPERNVEPKPKAEKYIFGKLIW 747
++R+FKV + + P K + G L+W
Sbjct: 705 QKRSFKVVVK-AKQMTPG----KIVSGLLVW 730
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 165/673 (24%), Positives = 274/673 (40%), Gaps = 119/673 (17%)
Query: 19 TFAAKKSYIVYLGTHS------HGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCS 72
T + K + IV L S G++ + + AR N +VK + ++
Sbjct: 51 TTSKKTTVIVELKEKSLAEAKEAGESQSKSKLKTARTKAKN---KAIKAVKNGK--VNRE 105
Query: 73 YGRHINGFAAILEEEHAQQLAKHPEVLSIF------LDEGRKVQTTRSWDFLGLEKDN-- 124
Y + +GF+ L +L +V +++ D + T S D + + D+
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 125 -VISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQC 183
I N AW+ G G+ + + +ID+GV Y
Sbjct: 166 PYIGANDAWDLGYTGKGIKVAIIDTGV---------------------------EYNHPD 198
Query: 184 NRKLIGMRYYNQGQIEHARAQNSSFYP--TPEHSTARDLDGHGTHAASTAVGNFVANVSV 241
+K N GQ + ++ + P TP + HGTH A T N
Sbjct: 199 LKK-------NFGQYKGYDFVDNDYDPKETPTGDPRGEATDHGTHVAGTVAAN------- 244
Query: 242 FGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEP 301
GT KG +P A L +Y+ V G ++++ + A+ DG DV+++SLG
Sbjct: 245 -----GTIKGVAPDATLLAYR----VLGPGGSGTTENVIAGVERAVQDGADVMNLSLGN- 294
Query: 302 SHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTMD-R 358
S N ++ A + AM G++ V + GN GP TV + + ++VGA+ +
Sbjct: 295 SLNNPDW---ATSTALDWAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLN 351
Query: 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECN--------PGAIDPKKINGKILLCMN 410
E+ VT G K + + N E + K + GK+ +
Sbjct: 352 EYA--VTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKR 409
Query: 411 HTHG-IDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIK 469
+ +DK+ A +AGA G+++ N E E+ +PT + +D + +++
Sbjct: 410 GSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVS------ 463
Query: 470 NPVASVSDVKTEFNTKPSP----QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525
+ KT F S Q+ FSSRGP ++ +IKPDI+APGV I++
Sbjct: 464 --ALKAGETKTTFKLTVSKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTI---- 516
Query: 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT 585
P+ P D + + GTSM++PHI+G ++K P WS IK+AIM TA T
Sbjct: 517 -PTHDP--DHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVT---- 569
Query: 586 GKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFT 645
+ D DG GAG +A+ + Y Y +++ G N++ FT
Sbjct: 570 ----LKDSDGEVYPHNAQGAGSARIMNAIKADSLVSPGSYSYGTFLKENG-NETKNETFT 624
Query: 646 TPEIHSCPKSFSI 658
S KS+++
Sbjct: 625 IENQSSIRKSYTL 637
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 157/623 (25%), Positives = 243/623 (39%), Gaps = 125/623 (20%)
Query: 61 SVKKARDSISC-----SYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSW 115
SVK A + ++ SYG +NGF+ + +L + V ++ L + +
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL--------AKVY 184
Query: 116 DFLGLEKDNVISQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQ 174
+ +++ + + W+ ++ GE ++ VIDSG+ P K V L + +
Sbjct: 185 YPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEK 244
Query: 175 -NDT-HYGFQCNRKL-IGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTA 231
DT +G N K+ G Y A N+ T T + HG H A
Sbjct: 245 FTDTAKHGRYFNSKVPYGFNY----------ADNND---TITDDTVDEQ--HGMHVAGII 289
Query: 232 VGNFVANVSVFGNGYGTAK---GGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288
N G G AK G +P A+L + K N + + ++SA +D+
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSAT-TGSATLVSAIEDSAK 340
Query: 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAP 346
G DVL++SLG S T +D +A G V +AGN G VN
Sbjct: 341 IGADVLNMSLGSDSGNQT--LEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDY 398
Query: 347 WLL----------------TVGASTMDREFTSYVTLGDE---QIFKEIMQGPLTQHSMIG 387
+ L TV ++ T VT+ D Q+ E +Q L+ H G
Sbjct: 399 YGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQ--LSSHDFTG 456
Query: 388 NLE-------------CNPGAI-----DPKKINGKILLCMNHTHGIDKSQLAAQA-GAAG 428
+ + + GA+ D K GKI + D Q AQA GAAG
Sbjct: 457 SFDQKKFYIVKDASGNLSKGALADYTADAK---GKIAIVKRGEFSFDDKQKYAQAAGAAG 513
Query: 429 LILVNPKQLEN--ESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKP 486
LI+VN S+ L PT + Q ++ + + +P S+ VK P
Sbjct: 514 LIIVNTDGTATPMTSIALTTTFPTFGLSSVTGQKLVDWVTA--HPDDSLG-VKITLAMLP 570
Query: 487 SP-----QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNA 541
+ +M+ F+S GP ++ KPDITAPG I S +
Sbjct: 571 NQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNIW-------------STQNNNGYTN 615
Query: 542 CFGTSMSTPHISGIAGLLK-TLHPDWSP-----AAIKSAIMTT-ATTTDHTGKNPITD-- 592
GTSM++P I+G LLK L+ +P +K +T T + PI D
Sbjct: 616 MSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDIN 675
Query: 593 YDGLKATPFEYGAGHVNPNSAMD 615
Y+ + +P GAG V+ +A+D
Sbjct: 676 YNNVIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 234/618 (37%), Gaps = 115/618 (18%)
Query: 61 SVKKARDSISC-----SYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSW 115
SVK A + ++ SYG +NGF+ + +L + V ++ L + +
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL--------AKVY 184
Query: 116 DFLGLEKDNVISQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQ 174
+ +++ + + W+ ++ GE ++ VIDSG+ P K V L + +
Sbjct: 185 YPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEK 244
Query: 175 -NDT-HYGFQCNRKL-IGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTA 231
DT +G N K+ G Y A N+ T T + HG H A
Sbjct: 245 FTDTAKHGRYFNSKVPYGFNY----------ADNND---TITDDTVDEQ--HGMHVAGII 289
Query: 232 VGNFVANVSVFGNGYGTAK---GGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288
N G G AK G +P A+L + K N + S ++SA +D+
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSAT-TGSSTLVSAIEDSAK 340
Query: 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAP 346
G DVL++SLG S T +D +A G V +AGN G VN
Sbjct: 341 IGADVLNMSLGSDSGNQT--LEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDY 398
Query: 347 WLL----------------TVGASTMDREFTSYVTLGDE----------QIFKEIMQGPL 380
+ L TV ++ T VT+ D Q+ G
Sbjct: 399 YGLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPGTIQLSSNDFTGSF 458
Query: 381 TQHSMI------GNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQA-GAAGLILVN 433
Q GNL A GKI + D Q AQA GAAGLI+VN
Sbjct: 459 DQKKFYVVKDASGNLSKGALADYTADAKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVN 518
Query: 434 PKQLEN--ESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSP--- 488
S+ L PT + Q ++ + + +P S+ VK P+
Sbjct: 519 NDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVTA--HPDDSLG-VKIALTLVPNQKYT 575
Query: 489 --QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
+M+ F+S GP ++ KPDITAPG I S + GTS
Sbjct: 576 EDKMSDFTSYGP--VSNLSFKPDITAPGGNIW-------------STQNNNGYTNMSGTS 620
Query: 547 MSTPHISGIAGLLK-TLHPDWSP-----AAIKSAIMTT-ATTTDHTGKNPITD--YDGLK 597
M++P I+G LLK L+ +P +K +T T + PI D Y+ +
Sbjct: 621 MASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVI 680
Query: 598 ATPFEYGAGHVNPNSAMD 615
+P GAG V+ +A+D
Sbjct: 681 VSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 119/437 (27%), Positives = 180/437 (41%), Gaps = 95/437 (21%)
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282
HGTH + GN + Y +G P A+L + VNG R+ A
Sbjct: 193 HGTHVSGILSGNAPSETK---EPY-RLEGAMPEAQLLLMR-VEIVNGLADYARN--YAQA 245
Query: 283 FDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE---GPK-- 337
DA++ G V+++S G + D +A G+ +V +AGN+ G K
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 304
Query: 338 ------PDTVVNLAPW----LLTVGASTMDREFTSYVTLG-DEQIFKE---IMQGPLTQH 383
PD V P LTV + + D++ T + D+Q KE + +
Sbjct: 305 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFEPN 364
Query: 384 SMIGNLECNPGAI--DPKKINGKI-LLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENE 440
N G D K + GKI L+ DK A +AGA G+++ +N+
Sbjct: 365 KAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKVANAKKAGAVGVLI-----YDNQ 419
Query: 441 SLPLPYHLPT-------------SLVEFDDAQSIIAYNNSIKN-PVASVSDVKTEFNTKP 486
P LP L+ D+ Q I +N + K P AS +
Sbjct: 420 DKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGT---------- 469
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
+++ FSS G T + NI KPDI APG +I+++ VA +K + GTS
Sbjct: 470 --KLSRFSSWG-LTADGNI-KPDIAAPGQDILSS----VANNK---------YAKLSGTS 512
Query: 547 MSTPHISGIAGLLK----TLHPDWSPAA----IKSAIMTTATTTDHTGKNPITDYDGLKA 598
MS P ++GI GLL+ T +PD +P+ K +M++AT + D D KA
Sbjct: 513 MSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA--------LYDEDE-KA 563
Query: 599 --TPFEYGAGHVNPNSA 613
+P + GAG V+ A
Sbjct: 564 YFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 236/618 (38%), Gaps = 115/618 (18%)
Query: 61 SVKKARDSISC-----SYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSW 115
SVK A + ++ SYG +NGF+ + +L + V ++ L + +
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL--------AKVY 184
Query: 116 DFLGLEKDNVISQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQ 174
+ +++ + + W+ ++ GE ++ VIDSG+ P K V L + +
Sbjct: 185 YPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEK 244
Query: 175 -NDT-HYGFQCNRKL-IGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTA 231
DT +G N K+ G Y A N+ T T + HG H A
Sbjct: 245 FTDTAKHGRYFNSKVPYGFNY----------ADNND---TITDDTVDEQ--HGMHVAGII 289
Query: 232 VGNFVANVSVFGNGYGTAK---GGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288
N G G AK G +P A+L + K N + + ++SA +D+
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSAT-TGSATLVSAIEDSAK 340
Query: 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAP 346
G DVL++SLG S T +D +A G V +AGN G VN
Sbjct: 341 IGADVLNMSLGSDSGNQT--LEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDY 398
Query: 347 WLL----------------TVGASTMDREFTSYVTLGDE---QIFKEIMQ-------GPL 380
+ L TV ++ T VT+ D Q+ E +Q G
Sbjct: 399 YGLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDFTGSF 458
Query: 381 TQHSMI------GNLECNPGAIDPKKINGKILLCMNHTHGI-DKSQLAAQAGAAGLILVN 433
Q GNL A GKI + DK + A AGAAGLI+VN
Sbjct: 459 DQKKFYVVKDASGNLSKGKVADYTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVN 518
Query: 434 PKQLEN--ESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSP--- 488
S+ L PT + Q ++ + +P S+ VK P+
Sbjct: 519 NDGTATPVTSMALTTTFPTFGLSSVTGQKLVDW--VAAHPDDSLG-VKIALTLVPNQKYT 575
Query: 489 --QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
+M+ F+S GP ++ KPDITAPG I S + GTS
Sbjct: 576 EDKMSDFTSYGP--VSNLSFKPDITAPGGNIW-------------STQNNNGYTNMSGTS 620
Query: 547 MSTPHISGIAGLLK-TLHPDWSP-----AAIKSAIMTT-ATTTDHTGKNPITD--YDGLK 597
M++P I+G LLK L+ +P +K +T T + PI D Y+ +
Sbjct: 621 MASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVI 680
Query: 598 ATPFEYGAGHVNPNSAMD 615
+P GAG V+ +A+D
Sbjct: 681 VSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 181/437 (41%), Gaps = 95/437 (21%)
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282
HGTH + GN + Y +G P A+L + VNG R+ A
Sbjct: 195 HGTHVSGILSGNAPSETK---EPY-RLEGAMPEAQLLLMR-VEIVNGLADYARN--YAQA 247
Query: 283 FDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE---GPK-- 337
DA++ G V+++S G + D +A G+ +V +AGN+ G K
Sbjct: 248 IRDAVNLGAKVINMSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 306
Query: 338 ------PDTVVNLAPW----LLTVGASTMDREFTSYVTLGD-EQIFKE---IMQGPLTQH 383
PD V P LTV + + D++ T T+ +Q KE + +
Sbjct: 307 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPN 366
Query: 384 SMIGNLECNPGAI--DPKKINGKI-LLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENE 440
N G D K + GKI L+ DK A +AGA G+++ +N+
Sbjct: 367 KAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLI-----YDNQ 421
Query: 441 SLPLPYHLPT-------------SLVEFDDAQSIIAYNNSIKN-PVASVSDVKTEFNTKP 486
P LP L+ D+++ I +N + K P AS +
Sbjct: 422 DKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGT---------- 471
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
+++ FSS G T + NI KPDI APG +I+++ VA +K + GTS
Sbjct: 472 --KLSRFSSWG-LTADGNI-KPDIAAPGQDILSS----VANNK---------YAKLSGTS 514
Query: 547 MSTPHISGIAGLLK----TLHPDWSPAA----IKSAIMTTATTTDHTGKNPITDYDGLKA 598
MS P ++GI GLL+ T +PD +P+ K +M++AT + D D KA
Sbjct: 515 MSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATA--------LYDEDE-KA 565
Query: 599 --TPFEYGAGHVNPNSA 613
+P + GAG V+ A
Sbjct: 566 YFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| 224122316 | 775 | predicted protein [Populus trichocarpa] | 0.958 | 0.934 | 0.542 | 0.0 | |
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.943 | 0.925 | 0.527 | 0.0 | |
| 224056865 | 772 | predicted protein [Populus trichocarpa] | 0.944 | 0.923 | 0.539 | 0.0 | |
| 296090005 | 803 | unnamed protein product [Vitis vinifera] | 0.941 | 0.885 | 0.549 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.940 | 0.953 | 0.550 | 0.0 | |
| 356510927 | 773 | PREDICTED: subtilisin-like protease-like | 0.945 | 0.923 | 0.535 | 0.0 | |
| 227053577 | 771 | subtilisin-like serine protease [Carica | 0.950 | 0.931 | 0.520 | 0.0 | |
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.964 | 0.946 | 0.529 | 0.0 | |
| 357462409 | 772 | Subtilisin-like protease [Medicago trunc | 0.948 | 0.927 | 0.521 | 0.0 | |
| 356525207 | 773 | PREDICTED: subtilisin-like protease-like | 0.945 | 0.923 | 0.527 | 0.0 |
| >gi|224122316|ref|XP_002330593.1| predicted protein [Populus trichocarpa] gi|222872151|gb|EEF09282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/768 (54%), Positives = 520/768 (67%), Gaps = 44/768 (5%)
Query: 6 LYVLVLFSLLLTPTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKA 65
L +FSLL PTFA KKSY+VYLG+HSHG PT DI+R + H+ LG F S +KA
Sbjct: 11 LLSFFIFSLLQPPTFAIKKSYVVYLGSHSHGLEPTQADIDRVTDSHYELLGLFTESKEKA 70
Query: 66 RDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNV 125
++ I SY INGFAA+LEEE A LAKHP+V+S+FL++ RK+ TT SW FLGLEKD V
Sbjct: 71 KEKIFYSYTNSINGFAAVLEEEEASALAKHPDVVSVFLNKARKLHTTHSWSFLGLEKDGV 130
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ +S W K R+GEDVIIG +D+GVWPESKSFSDEG+GPVP +WRGICQN T G CNR
Sbjct: 131 VPPSSLWKKARYGEDVIIGNLDTGVWPESKSFSDEGLGPVPSKWRGICQNATKEGVPCNR 190
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
KLIG RY+N+G NSSF TARD++GHGTH STA GNFV +VFGNG
Sbjct: 191 KLIGARYFNKGYGSIGGHLNSSF------QTARDIEGHGTHTLSTAAGNFVPGANVFGNG 244
Query: 246 YGTAKGGSPRARLASYKSCWNVNG-QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHK 304
GTAKGGSPRAR+A+YK CW G C ++DIL+ FD AI DGVDVLSVSLG
Sbjct: 245 KGTAKGGSPRARVAAYKVCWPAVGVNEGGCYEADILAGFDVAISDGVDVLSVSLGGAID- 303
Query: 305 NTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYV 364
EY DAIAIGSFHA GI VVA+AGN GP P +V N+APWL+TVGAST+DR FT YV
Sbjct: 304 --EYSDDAIAIGSFHAFKKGITVVASAGNSGPGPGSVSNVAPWLITVGASTLDRAFTIYV 361
Query: 365 TLGDEQIFKEIMQGPLTQHSMI----------------------GNLECNPGAIDPKKIN 402
LG+ + K + L+Q S+ NL C PG +D KK+
Sbjct: 362 ALGNRKHLKGVS---LSQKSLPARKFYPLISGARAKASNQSEEDANL-CKPGTLDSKKVK 417
Query: 403 GKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSI 461
GKIL+C+ + ++K +A AGA G+IL N ++ N L + LP + + D Q++
Sbjct: 418 GKILVCLRGVNPRVEKGHVALLAGAVGMILANDEESGNGILADAHVLPAAHIISTDGQAV 477
Query: 462 IAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAY 521
+Y NS K+P A +++V+TE TKP+P M FSSRGP+ + +I+KPDITAPGV +IAA+
Sbjct: 478 FSYLNSTKDPWAYITNVRTELGTKPAPFMASFSSRGPNILEESILKPDITAPGVSVIAAF 537
Query: 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATT 581
+ A P+ + D RRIPFN GTSMS PH+SGI GLLK+LHPDWSPAAI+SAIMTTATT
Sbjct: 538 TLATGPTDTAYDKRRIPFNTESGTSMSCPHVSGIVGLLKSLHPDWSPAAIRSAIMTTATT 597
Query: 582 TDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSII 641
D+ G +PI D +ATPF YGAGHV PN A DPGLVYDL+ D+L+Y+CSRGY +
Sbjct: 598 RDNNG-DPILDSSNTRATPFAYGAGHVQPNRAADPGLVYDLTVNDFLNYLCSRGYTAKDL 656
Query: 642 NNFTTPEIHSCPKSFSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGV 701
FT + ++CPKSFS+ DFNYP+I+ +LN+++T+TRRVKNVG+ Y +V GV
Sbjct: 657 KLFTD-KPYTCPKSFSLTDFNYPSISAINLNDTITVTRRVKNVGSPG-KYYIHVREPTGV 714
Query: 702 SVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
V V P L F + GEE+TFKVTF + PK K + Y FG L WSD
Sbjct: 715 LVSVAPTTLEFKKLGEEKTFKVTF----KLAPKWKLKDYTFGILTWSD 758
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/756 (52%), Positives = 518/756 (68%), Gaps = 44/756 (5%)
Query: 18 PTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHI 77
PTFA ++SYIVYLG HSHG P++DD+++ H+ FLGSF GS A+++I SY RHI
Sbjct: 22 PTFAIERSYIVYLGAHSHGPEPSSDDLDQVTESHYEFLGSFLGSRDNAKEAIIYSYTRHI 81
Query: 78 NGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRF 137
NGFAA L++ A Q+A HP+V+S+FL++GRK+ TTRSW FLGLE D +I NS W K RF
Sbjct: 82 NGFAATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWHFLGLENDGIIPSNSIWKKARF 141
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
G+D IIG +D+GVWPES SFSDEGMGP+P RWRGICQND GF CNRKLIG RY++QG
Sbjct: 142 GQDTIIGNLDTGVWPESASFSDEGMGPIPSRWRGICQNDKDAGFHCNRKLIGARYFHQGY 201
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
+ NSSF+ T RD +GHG+H STA GNFV SVFG G GTAKGGSP+AR
Sbjct: 202 AAAVGSLNSSFH------TPRDTEGHGSHTLSTAGGNFVEGASVFGFGNGTAKGGSPKAR 255
Query: 258 LASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIG 316
+A+YK CW V G +C D+DIL+AFD AIHDGVDVLS SLG T +F D+++IG
Sbjct: 256 VAAYKVCWPPVGGN--ECFDADILAAFDIAIHDGVDVLSASLGG---LPTPFFNDSLSIG 310
Query: 317 SFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIM 376
SFHA+ HGI+VV +AGN GP TV N++PW TVGASTMDR+F SY+ LG++ K +
Sbjct: 311 SFHAVKHGIVVVCSAGNSGPADGTVSNISPWQFTVGASTMDRQFPSYLVLGNK---KRLE 367
Query: 377 QGPLTQHSMIGN---------------------LECNPGAIDPKKINGKILLCMNHTHG- 414
G L+ ++ N L C G +D K+ GKIL+C+ +
Sbjct: 368 GGSLSPKALPPNKFFPLISAADAKAANASADDALLCKAGTLDHSKVKGKILVCLRGENAR 427
Query: 415 IDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVAS 474
+DK Q AA AGA G++L N + NE + P+ LP S + F D ++ Y NS K+P+A
Sbjct: 428 VDKGQQAALAGAVGMVLANNELTGNEVIADPHVLPASHINFTDGVAVFTYLNSTKSPIAY 487
Query: 475 VSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDD 534
++ TE TKP+P M FSS+GP+TI P I+KPDITAPGV +IAAY+EA P+ D
Sbjct: 488 ITPSTTELGTKPAPFMAAFSSKGPNTITPEILKPDITAPGVSVIAAYTEAQGPTNQDFDK 547
Query: 535 RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYD 594
RR+ FN+ GTSMS PH+SGI GLLKTLHPDWSPAAI+SA+MTTA T D++ I +
Sbjct: 548 RRVLFNSVSGTSMSCPHVSGIVGLLKTLHPDWSPAAIRSAMMTTARTMDNS-MEAILNAS 606
Query: 595 GLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPK 654
KATPF YGAGHV PN AM+PGLVYDL+ DYL+++C+ GYNQ++I F+ ++CPK
Sbjct: 607 YFKATPFSYGAGHVRPNRAMNPGLVYDLNVNDYLNFLCALGYNQTLIKMFSE-RPYTCPK 665
Query: 655 SFSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTE 714
S+ +FNYP+I +P L+ S+T+TR +KNVG +Y+A + G+SV V+P++L F +
Sbjct: 666 PISLTNFNYPSITVPKLHGSITVTRTLKNVGPPG-TYKARIRKPTGISVSVKPDSLKFNK 724
Query: 715 YGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750
GEE+TF +T ER A Y+FG+LIWSD+
Sbjct: 725 IGEEKTFSLTLQAER----AGAARDYVFGELIWSDA 756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056865|ref|XP_002299062.1| predicted protein [Populus trichocarpa] gi|222846320|gb|EEE83867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/752 (53%), Positives = 514/752 (68%), Gaps = 39/752 (5%)
Query: 19 TFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHIN 78
TFA +KSY+VYLG+HSHG PT DI R + H+ LGSF +KA++ I SY +IN
Sbjct: 25 TFATQKSYVVYLGSHSHGLEPTQSDIERVTDSHYELLGSFTEGKEKAKEKIFYSYTNNIN 84
Query: 79 GFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFG 138
GFAA+LEEE A LAKHP+V+S+FL++G+K+ TTRSW+FLGLE D ++ S W K R+G
Sbjct: 85 GFAAVLEEEEASSLAKHPDVVSVFLNKGKKLHTTRSWNFLGLEADGMVPPYSLWKKARYG 144
Query: 139 EDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQI 198
EDVIIG +D+GVWPESKSFSDEGMGPVP +WRGICQ+D G CNRKLIG RY+N+G
Sbjct: 145 EDVIIGNLDTGVWPESKSFSDEGMGPVPSKWRGICQHDNKDGVVCNRKLIGTRYFNKGYA 204
Query: 199 EHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARL 258
+A NSSF TARD +GHGTH STA GNFV V G G GTAKGGSP AR
Sbjct: 205 AYAGHLNSSF------QTARDSEGHGTHTLSTAAGNFVPGADVLGYGNGTAKGGSPHARA 258
Query: 259 ASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL-GEPSHKNTEYFKDAIAIG 316
A+YK CW +NG +C D+DIL+AFD AI DGVDVLSVSL G+P+ E+ DAIAIG
Sbjct: 259 AAYKVCWPPINGSN-ECFDADILAAFDVAISDGVDVLSVSLGGDPA----EFSDDAIAIG 313
Query: 317 SFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK--- 373
SFHA+ GI VVA+AGN GP P TV N+APWL+TVGASTMDR FT YV LG+ + K
Sbjct: 314 SFHAVAKGITVVASAGNSGPSPGTVSNVAPWLITVGASTMDRAFTIYVALGNRKHLKGAS 373
Query: 374 ---------------EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHG-IDK 417
S L C PGA+DPKK+ GKIL+C+ +G +DK
Sbjct: 374 LSEKRLPAEKFYPLISAADAKAADQSEEDALLCKPGALDPKKVKGKILVCLRGENGRVDK 433
Query: 418 SQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSD 477
A AGA G+IL N + NE + + LP + V F D +++ +Y N K P+A +++
Sbjct: 434 GHQALLAGAVGMILANDENSGNEIIADTHVLPAAHVNFTDGEAVFSYLNFTKEPMAFLTN 493
Query: 478 VKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537
V+TE TKP+P M FSSRGP+ I +I+KPDITAPGV +IAA+++A+ PS + D RR
Sbjct: 494 VRTELATKPAPFMASFSSRGPNIIEESILKPDITAPGVSVIAAFTQAIGPSDAEYDKRRT 553
Query: 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLK 597
P+N GTSMS PH+SGI GLLKTLHP+WSPAAI+SAIMTTATT D+ G+ PI D K
Sbjct: 554 PYNTQSGTSMSCPHVSGIVGLLKTLHPEWSPAAIRSAIMTTATTRDNNGE-PIMDSTNTK 612
Query: 598 ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFS 657
ATPF GAGHV PN A DPGL+YDL+ D+L+++C+RG + I F+ + ++CPKSFS
Sbjct: 613 ATPFADGAGHVQPNHAADPGLIYDLTVNDFLNFLCNRGNTKKNIKLFSD-KPYTCPKSFS 671
Query: 658 ILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGE 717
+ DFNYP+I + +LN+S+T+TRRVKNVG+ +Y ++ GV+V V P+ L F + GE
Sbjct: 672 LADFNYPSITVTNLNDSITVTRRVKNVGSPG-TYNIHIRAPPGVTVSVAPSILRFQKIGE 730
Query: 718 ERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
E+ FKVTF + PK Y+FG L W D
Sbjct: 731 EKMFKVTF----KLAPKAVLTDYVFGMLTWGD 758
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/759 (54%), Positives = 536/759 (70%), Gaps = 48/759 (6%)
Query: 24 KSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAI 83
+SYIVYLG HSHG PT+ D++R N H++FLGSF GS +KA+D++ SY ++INGFAAI
Sbjct: 57 QSYIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAI 116
Query: 84 LEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVII 143
LEEE A ++AKHP V+S+FL++GRK+ TTRSW FL LEK+ VI NS W K RFGED II
Sbjct: 117 LEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTII 176
Query: 144 GVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARA 203
G +D+GVWPESKSFSDEGMG VP +WRG CQ++T CNRKLIG RY+N+G +A
Sbjct: 177 GNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGP 236
Query: 204 QNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263
NSSF ++ARD +GHG+H STA G+ V SVFG G GTAKGGSP AR+A+YK
Sbjct: 237 LNSSF------NSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKV 290
Query: 264 CW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMM 322
CW VN C D+DI++AFD AIHDGVDVLSVSLG + ++YF D +AIGSFHA+
Sbjct: 291 CWPQVNNG--GCFDADIMAAFDAAIHDGVDVLSVSLGGDA---SDYFTDGLAIGSFHAVK 345
Query: 323 HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK-EIMQGPLT 381
GI+VV++AGN+GPK +V N++PW++TVGAST+DREFT+YV LG+ + K E +Q ++
Sbjct: 346 RGIVVVSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKNEHLQMGMS 405
Query: 382 Q----------HSMIGNLE-------------CNPGAIDPKKINGKILLCMNHTH-GIDK 417
+ +I +L+ C PG ++PKK+ GKIL+C+ + +DK
Sbjct: 406 LSTKGLPSNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDK 465
Query: 418 SQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSD 477
+ AA AGA G IL N Q NE + P+ LP S V F D ++ Y NS KNP+A ++
Sbjct: 466 GEQAALAGAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTR 525
Query: 478 VKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537
V+T+ KP+P M FSS+GP+TI P I+KPDITAPGV IIAAYSE++ P+ D RRI
Sbjct: 526 VRTQLGIKPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRI 585
Query: 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLK 597
PFNA GTSMS PHISGI GLLKTLHPDWSPAAIKSAIMT+A T D P+ + LK
Sbjct: 586 PFNAQSGTSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDN-MEPMLNSSNLK 644
Query: 598 ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFS 657
ATPF YGAGHV PN AMDPGLVYD + DYL+++C+ GYN++ + F+ + + CPKSFS
Sbjct: 645 ATPFSYGAGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ-KPYKCPKSFS 703
Query: 658 ILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGE 717
+ FNYP+I P+L+ SVTI+R VKNVGT +Y A+V+ G+SV V+PN L F EYGE
Sbjct: 704 LTGFNYPSITAPNLSGSVTISRTVKNVGTP-GTYTASVKAPPGISVAVKPNKLEFREYGE 762
Query: 718 ERTFKVTFTPE-RNVEPKPKAEKYIFGKLIWSDSDGLHH 755
E++F++T + R V AE Y+FG+LIW SDG H+
Sbjct: 763 EKSFRLTLKAKGRRV-----AEDYVFGRLIW--SDGQHY 794
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/752 (55%), Positives = 528/752 (70%), Gaps = 42/752 (5%)
Query: 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAIL 84
SYIVYLG HSHG PT+ D++R N H++FLGSF GS +KA+D++ SY ++INGFAAIL
Sbjct: 6 SYIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAIL 65
Query: 85 EEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIG 144
EEE A ++AKHP V+S+FL++GRK+ TTRSW FL LEK+ VI NS W K RFGED IIG
Sbjct: 66 EEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTIIG 125
Query: 145 VIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQ 204
+D+GVWPESKSFSDEGMG VP +WRG CQ++T CNRKLIG RY+N+G +A
Sbjct: 126 NLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGPL 185
Query: 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSC 264
NSSF ++ARD +GHG+H STA G+ V SVFG G GTAKGGSP AR+A+YK C
Sbjct: 186 NSSF------NSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVC 239
Query: 265 W-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH 323
W VN C D+DI++AFD AIHDGVDVLSVSLG + ++YF D +AIGSFHA+
Sbjct: 240 WPQVNNG--GCFDADIMAAFDAAIHDGVDVLSVSLGGDA---SDYFTDGLAIGSFHAVKR 294
Query: 324 GILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI-------- 375
GI+VV++AGN+GPK +V N++PW++TVGAST+DREFT+YV LG+ + K +
Sbjct: 295 GIVVVSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSLSTKGLP 354
Query: 376 ----------MQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQA 424
+ S + C PG ++PKK+ GKIL+C+ + +DK + AA A
Sbjct: 355 SNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALA 414
Query: 425 GAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNT 484
GA G IL N Q NE + P+ LP S V F D ++ Y NS KNP+A ++ V+T+
Sbjct: 415 GAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGI 474
Query: 485 KPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFG 544
KP+P M FSS+GP+TI P I+KPDITAPGV IIAAYSE++ P+ D RRIPFNA G
Sbjct: 475 KPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSG 534
Query: 545 TSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604
TSMS PHISGI GLLKTLHPDWSPAAIKSAIMT+A T D P+ + LKATPF YG
Sbjct: 535 TSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDN-MEPMLNSSNLKATPFSYG 593
Query: 605 AGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSILDFNYP 664
AGHV PN AMDPGLVYD + DYL+++C+ GYN++ + F+ + + CPKSFS+ FNYP
Sbjct: 594 AGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ-KPYKCPKSFSLTGFNYP 652
Query: 665 TIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVT 724
+I P+L+ SVTI+R VKNVGT +Y A+V+ G+SV V+PN L F EYGEE++F++T
Sbjct: 653 SITAPNLSGSVTISRTVKNVGTP-GTYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLT 711
Query: 725 FTPE-RNVEPKPKAEKYIFGKLIWSDSDGLHH 755
+ R V AE Y+FG+LIW SDG H+
Sbjct: 712 LKAKGRRV-----AEDYVFGRLIW--SDGQHY 736
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/751 (53%), Positives = 509/751 (67%), Gaps = 37/751 (4%)
Query: 18 PTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHI 77
P+FA KKSY+VYLG HSH ++ D N+ HH FLGSF GS +DSI SY RHI
Sbjct: 23 PSFALKKSYVVYLGAHSHKPELSSVDFNQVTQSHHEFLGSFLGSSNTTKDSIFYSYTRHI 82
Query: 78 NGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRF 137
NGFAAILEEE A +++KHP+VLS+F + GRK+ TTRSWDF+GLE + VI NS W K RF
Sbjct: 83 NGFAAILEEEVAAEISKHPKVLSVFENRGRKLHTTRSWDFMGLEHNGVIQSNSIWKKARF 142
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
GE VIIG +D+GVWPESKSFS+EG+GP+P +WRGIC N + F CNRKLIG RY+N+G
Sbjct: 143 GEGVIIGNLDTGVWPESKSFSEEGLGPIPSKWRGICHNGIDHTFHCNRKLIGARYFNKGY 202
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
A NSSF + RD +GHGTH STA GN VA VSVFG G+GTAKGGSP AR
Sbjct: 203 ASVAGPLNSSF------DSPRDNEGHGTHTLSTAGGNMVARVSVFGQGHGTAKGGSPMAR 256
Query: 258 LASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIG 316
+A+YK CW V G +C D+DIL+AFD AIHDGVDVLS+SLG + + +FKD++AIG
Sbjct: 257 VAAYKVCWPPVAGD--ECFDADILAAFDLAIHDGVDVLSLSLGGSA---STFFKDSVAIG 311
Query: 317 SFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK--- 373
SFHA HGI+VV +AGN GP T NLAPW +TV ASTMDR+F +YV LG+ FK
Sbjct: 312 SFHAAKHGIVVVCSAGNSGPADATAENLAPWHVTVAASTMDRQFPTYVFLGNNITFKGES 371
Query: 374 --------------EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHG-IDKS 418
+ L + C G +DP K+ GKI++C+ + +DK
Sbjct: 372 LSATILAPKFYPIIKATDAKLASARAEDAVLCQNGTLDPNKVKGKIVVCLRGINARVDKG 431
Query: 419 QLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDV 478
+ A AGA G++L N K NE + P+ LP S + F D ++ Y NS K PVA ++
Sbjct: 432 EQAFLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDGSAVFTYINSTKFPVAYITHP 491
Query: 479 KTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538
KT+ +TKP+P M FSS+GP+TI P I+KPDITAPGV +IAAY+EA P+ D RRIP
Sbjct: 492 KTQLDTKPAPFMAAFSSKGPNTIVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIP 551
Query: 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598
FN+ GTSMS PH+SGI GLL+ L+P WSPAAIKSAIMTTATT D+ + + DG KA
Sbjct: 552 FNSVSGTSMSCPHVSGIVGLLRALYPTWSPAAIKSAIMTTATTLDNEVEPLLNATDG-KA 610
Query: 599 TPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSI 658
TPF YGAGHV PN AMDPGLVYD + DYL+++C+ GYN + I+ FT + C K FS+
Sbjct: 611 TPFSYGAGHVQPNRAMDPGLVYDTTIDDYLNFLCALGYNATQISVFTEGP-YQCRKKFSL 669
Query: 659 LDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEE 718
L+ NYP+I +P L+ SVT+TRR+KNVG+ +Y A+V+ G+++ V+P+ L F GEE
Sbjct: 670 LNLNYPSITVPKLSGSVTVTRRLKNVGS-PGTYIAHVQNPHGITISVKPSILKFKNVGEE 728
Query: 719 RTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
++FKVTF + Y+FGKLIWSD
Sbjct: 729 KSFKVTFKAMQG----KATNNYVFGKLIWSD 755
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/757 (52%), Positives = 525/757 (69%), Gaps = 39/757 (5%)
Query: 16 LTPTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGR 75
LTP A+K SY+VYLG HSHG ++ D++R + H++FLGSF GS ++A++SI SY +
Sbjct: 20 LTPVIASKSSYVVYLGAHSHGLELSSADLDRVKESHYDFLGSFLGSPEEAQESIFYSYTK 79
Query: 76 HINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKG 135
HINGFAA L +E A +LAKHP+V+S+FL++GRK+ TTRSWDFLGLE++ V+ +S W K
Sbjct: 80 HINGFAAELNDEVAAKLAKHPKVVSVFLNKGRKLHTTRSWDFLGLEQNGVVPSSSIWKKA 139
Query: 136 RFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQ 195
RFGED IIG +D+GVWPESKSFSDEG+GP+P +WRGIC + F CNRKLIG R++N+
Sbjct: 140 RFGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWRGICDHGKDSSFHCNRKLIGARFFNR 199
Query: 196 GQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPR 255
G + NSSF + RD +GHGTH STA GN VAN SVFG G GTAKGGSPR
Sbjct: 200 GYASAVGSLNSSF------ESPRDNEGHGTHTLSTAGGNMVANASVFGLGKGTAKGGSPR 253
Query: 256 ARLASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIA 314
AR+A+YK CW V G +C D+DIL+AFD AIHD VDVLSVSLG + +F D++A
Sbjct: 254 ARVAAYKVCWPPVLGN--ECFDADILAAFDAAIHDRVDVLSVSLGGTAGG---FFNDSVA 308
Query: 315 IGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK- 373
IGSFHA+ HGI+VV +AGN GP +V N+APW +TVGASTMDREF SYV LG+ FK
Sbjct: 309 IGSFHAVKHGIVVVCSAGNSGPDDGSVSNVAPWQITVGASTMDREFPSYVLLGNNMSFKG 368
Query: 374 -----EIMQG----PL--------TQHSMIGNLECNPGAIDPKKINGKILLCMNHTHG-I 415
++ G PL T S + C GA+DPKK+ GKIL+C+ + +
Sbjct: 369 ESLSDAVLPGTNFFPLISALNAKATNASNEEAILCEAGALDPKKVKGKILVCLRGLNARV 428
Query: 416 DKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASV 475
DK Q AA AGA G+IL N + NE + + LP S + F D S+ Y N +PVA +
Sbjct: 429 DKGQQAALAGAVGMILANSELNGNEIIADAHVLPASHISFTDGLSVFEYINLTNSPVAYM 488
Query: 476 SDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDR 535
+ KT+ TKP+P M FSS+GP+ + P I+KPDITAPGV +IAAY+ A P+ D R
Sbjct: 489 TRPKTKLPTKPAPVMAAFSSKGPNIVTPEILKPDITAPGVNVIAAYTRAQGPTNQNFDRR 548
Query: 536 RIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595
R+ FN+ GTSMS PH+SGI GLLKTL+P WSPAAI+SAIMT+ATT D+ ++ I +
Sbjct: 549 RVQFNSVSGTSMSCPHVSGIVGLLKTLYPSWSPAAIRSAIMTSATTMDNINES-ILNASN 607
Query: 596 LKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKS 655
+KATPF YGAGHV PN AM+PGLVYDL+ DYL ++C+ GY++++I+ F+ + + CP++
Sbjct: 608 VKATPFSYGAGHVQPNQAMNPGLVYDLNTKDYLKFLCALGYSKTLISIFSNDKFN-CPRT 666
Query: 656 -FSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTE 714
S+ DFNYP+I +P+L +T++R+VKNVG+ ++Y V+ G+SV V+P L F +
Sbjct: 667 NISLADFNYPSITVPELKGLITLSRKVKNVGSP-TTYRVTVQKPKGISVTVKPKILKFKK 725
Query: 715 YGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSD 751
GEE++F VT ++ K ++Y+FG+L+WSD D
Sbjct: 726 AGEEKSFTVTL----KMKAKNPTKEYVFGELVWSDED 758
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/772 (52%), Positives = 522/772 (67%), Gaps = 44/772 (5%)
Query: 6 LYVLVLFSLLLTPTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKA 65
L + +L+ PTFA+ K Y+VY G HSHG P++ D N A++ H+ FLGSF GS + A
Sbjct: 10 LLPFLFLTLVQRPTFASIKPYVVYFGGHSHGPKPSSFDANLAKDSHYEFLGSFLGSREFA 69
Query: 66 RDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNV 125
D+I SY RHINGFAA LE+E A ++AKHP V+S+FL++GRK TT SW FLGLEKD V
Sbjct: 70 EDAIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWSFLGLEKDGV 129
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ +S W K RFGED IIG +D+GVWPES+SFSDEG+GPVP +W+GICQN GF CNR
Sbjct: 130 VPSSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNGYDPGFHCNR 189
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
KLIG RY+N+G NSSF T RD DGHG+H STA GNFVA SVF G
Sbjct: 190 KLIGARYFNKGYASIVGHLNSSF------DTPRDEDGHGSHTLSTAGGNFVAGASVFYMG 243
Query: 246 YGTAKGGSPRARLASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHK 304
GTAKGGSP+AR+A+YK C+ V+G +C D+DIL+AFD AI DGVDVLSVSLG
Sbjct: 244 NGTAKGGSPKARVAAYKVCYPPVDGD--ECFDADILAAFDAAISDGVDVLSVSLGG---N 298
Query: 305 NTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYV 364
T +F D++AIGSFHA+ HGI+V+ +AGN GP TV N+APW +TVGASTMDREF SYV
Sbjct: 299 PTAFFNDSVAIGSFHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREFPSYV 358
Query: 365 TLGDEQIFK-EIMQG---------PL--------TQHSMIGNLECNPGAIDPKKINGKIL 406
LG++ FK E + PL T S+ L C G++DP+K GKIL
Sbjct: 359 VLGNKISFKGESLSAKALPKNKFFPLMSAADARATNASVENALLCKDGSLDPEKAKGKIL 418
Query: 407 LCMNHTHG-IDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYN 465
+C+ + +DK Q AA AGA G++L N K NE L P+ LP S + + +I Y
Sbjct: 419 VCLRGINARVDKGQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGVAIFKYI 478
Query: 466 NSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525
NS + PVA ++ T TKP+P + FSS+GP+T+ P I+KPDITAPGV +IAAY++A
Sbjct: 479 NSTEYPVAYITHPVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIAAYTKAQ 538
Query: 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT 585
P+ D RR+ FN+ GTSMS PH+SGI GLLKTLHP WSPA+IKSAIMTTA T D+T
Sbjct: 539 GPTNQDFDTRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTAMTQDNT 598
Query: 586 GKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFT 645
PI + + KA+PF YGAGH+ PN AMDPGLVYDL+ DYL+ +C+ GYN++ I+ F+
Sbjct: 599 -MEPILNANHTKASPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNETQISTFS 657
Query: 646 TPEIHSCP-KSFSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVV 704
+ CP K S+ +FNYP+I +P N S+T++R VKNVG+ S+Y+ + GVSV
Sbjct: 658 DAP-YECPSKPISLANFNYPSITVPKFNGSITLSRTVKNVGS-PSTYKLRIRKPTGVSVS 715
Query: 705 VEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEK-YIFGKLIWSDSDGLHH 755
VEP L F + GEE+ F VT ++ K KA K Y+FG+LIWSD+ HH
Sbjct: 716 VEPKKLEFKKVGEEKAFTVT------LKGKGKAAKDYVFGELIWSDNK--HH 759
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462409|ref|XP_003601486.1| Subtilisin-like protease [Medicago truncatula] gi|355490534|gb|AES71737.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/754 (52%), Positives = 508/754 (67%), Gaps = 38/754 (5%)
Query: 17 TPTFAAKKSYIVYLGTHSH-GKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGR 75
TPTFA KSY+VYLG+HSH + ++ D NR + H+ FLGSF GS K A++SI SY R
Sbjct: 22 TPTFAEIKSYVVYLGSHSHDSEELSSVDFNRVTDSHYEFLGSFLGSSKTAKESIFYSYTR 81
Query: 76 HINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKD-NVISQNSAWNK 134
HINGFAA LEEE A ++AKHP+VLS+F + GRK+ TT SW F+GLE VI +S WNK
Sbjct: 82 HINGFAATLEEEVAAEIAKHPKVLSVFENNGRKLHTTHSWGFMGLEDSYGVIPSSSIWNK 141
Query: 135 GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYN 194
RFG+ +II +D+GVWPESKSFSDEG GP+P +WRGIC F CNRKLIG RY+N
Sbjct: 142 ARFGDGIIIANLDTGVWPESKSFSDEGFGPIPSKWRGICDKGRDPSFHCNRKLIGARYFN 201
Query: 195 QGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSP 254
+G +S + TP RD +GHG+H STA GN V VSVFG GYGTAKGGSP
Sbjct: 202 KGYASRLTVPLNSSFETP-----RDNEGHGSHTLSTAGGNMVPGVSVFGQGYGTAKGGSP 256
Query: 255 RARLASYKSCWN-VNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAI 313
+AR+ASYK CW +NG +C D+DIL+AFD AIHDGVDVLSVSLG + + F D++
Sbjct: 257 KARVASYKVCWPPINGD--ECFDADILAAFDAAIHDGVDVLSVSLGGSA---SNLFNDSV 311
Query: 314 AIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK 373
AIGSFHA GI+VV +AGN GP T NLAPW +TVGASTMDREF SYV LG+ FK
Sbjct: 312 AIGSFHAAKKGIVVVCSAGNSGPNDATASNLAPWYITVGASTMDREFPSYVVLGNNLTFK 371
Query: 374 -----------------EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHG-I 415
+ L + + C G +DPKK+ GKI+LC+ + +
Sbjct: 372 GESLSAARLADKFYPIIKATDAKLASATNEDAVLCQNGTLDPKKVKGKIVLCLRGINARV 431
Query: 416 DKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASV 475
DK + A AGA G++L N K NE + P+ LP S + F D + Y NS K+PVA +
Sbjct: 432 DKGEQALLAGAVGMVLANDKTTGNEIIADPHVLPASHINFSDGVEVFHYVNSSKSPVAYI 491
Query: 476 SDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDR 535
+ T+ +TKP+P M FSS+GP+TI P I+KPDITAPGV +IAAY+EA P+ D+R
Sbjct: 492 THPTTKLHTKPAPFMAAFSSKGPNTIIPEILKPDITAPGVSVIAAYTEAEGPTNQEFDNR 551
Query: 536 RIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595
RI FN+ GTSMS PHISGI GLL++L+P W+PAAIKSAIMTTATT D+ + PI +
Sbjct: 552 RIQFNSVSGTSMSCPHISGIVGLLRSLYPSWTPAAIKSAIMTTATTLDNKAE-PIMNATK 610
Query: 596 LKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKS 655
+ATPF YGAGHV PNSAMDPGLVYD++ DY +++C+ GYN++ ++ F+ + C K+
Sbjct: 611 SQATPFSYGAGHVQPNSAMDPGLVYDITTNDYFNFLCALGYNETQMSLFSKGP-YKCHKN 669
Query: 656 FSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEY 715
FSIL+ NYP+I +P+L+ SVT+TR +KNVG +Y +V+ G+++ V+PN L F +
Sbjct: 670 FSILNLNYPSITVPNLSGSVTVTRTLKNVGAPG-TYIVHVQSPSGITISVKPNILEFKKV 728
Query: 716 GEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
GEE+ F+V V+ + Y+FGK+IWSD
Sbjct: 729 GEEKRFEVKL----KVKKGKATKSYVFGKMIWSD 758
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525207|ref|XP_003531218.1| PREDICTED: subtilisin-like protease-like [Glycine max] gi|33621210|gb|AAQ23176.1| subtilisin-like protease [Glycine max] gi|409032216|gb|AFV08660.1| subtilisin-like protease [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/751 (52%), Positives = 509/751 (67%), Gaps = 37/751 (4%)
Query: 18 PTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHI 77
P+FA KKSY+VYLG HSHG ++ D N+ HH+FLGSF GS A+DSI SY RHI
Sbjct: 23 PSFAVKKSYVVYLGAHSHGPELSSVDFNQVTQSHHDFLGSFLGSSNTAKDSIFYSYTRHI 82
Query: 78 NGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRF 137
NGFAA L+EE A ++AKHP+VLS+F + GRK+ TTRSWDF+ LE + VI +S W K RF
Sbjct: 83 NGFAATLDEEVAVEIAKHPKVLSVFENRGRKLHTTRSWDFMELEHNGVIQSSSIWKKARF 142
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
GE VIIG +D+GVWPESKSFS++G+GP+P +WRGIC N + F CNRKLIG RY+N+G
Sbjct: 143 GEGVIIGNLDTGVWPESKSFSEQGLGPIPSKWRGICDNGIDHTFHCNRKLIGARYFNKGY 202
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
A NSSF + RD +GHGTH STA GN VA VSVFG G GTAKGGSP AR
Sbjct: 203 ASVAGPLNSSF------DSPRDNEGHGTHTLSTAGGNMVARVSVFGQGQGTAKGGSPMAR 256
Query: 258 LASYKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIG 316
+A+YK CW V G+ +C D+DIL+AFD AIHDGVDVLSVSL ++ +FKD++AIG
Sbjct: 257 VAAYKVCWPPVGGE--ECFDADILAAFDLAIHDGVDVLSVSL---GGSSSTFFKDSVAIG 311
Query: 317 SFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK-EI 375
SFHA G++VV +AGN GP T NLAPW +TV ASTMDR+F +YV LG++ FK E
Sbjct: 312 SFHAAKRGVVVVCSAGNSGPAEATAENLAPWHVTVAASTMDRQFPTYVVLGNDITFKGES 371
Query: 376 MQGPLTQHSMIGNLE----------------CNPGAIDPKKINGKILLCMNHTHG-IDKS 418
+ H ++ C G +DP K GKI++C+ + +DK
Sbjct: 372 LSATKLAHKFYPIIKATDAKLASARAEDAVLCQNGTLDPNKAKGKIVVCLRGINARVDKG 431
Query: 419 QLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDV 478
+ A AGA G++L N K NE + P+ LP S + F D ++ Y NS K PVA ++
Sbjct: 432 EQAFLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDGSAVFNYINSTKFPVAYITHP 491
Query: 479 KTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538
KT+ +TKP+P M FSS+GP+T+ P I+KPDITAPGV +IAAY+EA P+ D RRIP
Sbjct: 492 KTQLDTKPAPFMAAFSSKGPNTMVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIP 551
Query: 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598
FN+ GTSMS PH+SGI GLL+ L+P WS AAIKSAIMTTATT D+ + + DG KA
Sbjct: 552 FNSVSGTSMSCPHVSGIVGLLRALYPTWSTAAIKSAIMTTATTLDNEVEPLLNATDG-KA 610
Query: 599 TPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSI 658
TPF YGAGHV PN AMDPGLVYD++ DYL+++C+ GYN++ I+ FT + C K FS+
Sbjct: 611 TPFSYGAGHVQPNRAMDPGLVYDITIDDYLNFLCALGYNETQISVFTEGP-YKCRKKFSL 669
Query: 659 LDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEE 718
L+ NYP+I +P L+ SVT+TR +KNVG+ +Y A+V+ G++V V+P+ L F GEE
Sbjct: 670 LNLNYPSITVPKLSGSVTVTRTLKNVGS-PGTYIAHVQNPYGITVSVKPSILKFKNVGEE 728
Query: 719 RTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
++FK+TF + Y FGKLIWSD
Sbjct: 729 KSFKLTFKAMQG----KATNNYAFGKLIWSD 755
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.947 | 0.919 | 0.472 | 1.8e-181 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.933 | 0.913 | 0.481 | 5e-179 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.937 | 0.929 | 0.435 | 4e-161 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.941 | 0.889 | 0.435 | 2.5e-159 | |
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.360 | 0.343 | 0.442 | 2.1e-141 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.928 | 0.911 | 0.398 | 5.4e-134 | |
| TAIR|locus:2037935 | 777 | SBT3.3 "AT1G32960" [Arabidopsi | 0.923 | 0.897 | 0.393 | 8.4e-129 | |
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.674 | 0.689 | 0.385 | 3.4e-128 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.880 | 0.870 | 0.398 | 2e-127 | |
| TAIR|locus:2037895 | 774 | SBT3.5 "AT1G32940" [Arabidopsi | 0.925 | 0.903 | 0.387 | 1.8e-126 |
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1761 (625.0 bits), Expect = 1.8e-181, P = 1.8e-181
Identities = 358/758 (47%), Positives = 485/758 (63%)
Query: 17 TPTFAAKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRH 76
+P FA KKSYIVYLG+H+H ++ ++ + H FL SF GS + A+++I SY RH
Sbjct: 33 SPAFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRH 92
Query: 77 INGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGR 136
INGFAAIL+E A ++AKHP+V+S+F ++GRK+ TT SW+F+ L K+ V+ ++S WNK
Sbjct: 93 INGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAG 152
Query: 137 FGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQG 196
+GED II +D+GVWPESKSFSDEG G VP RW+G C D CNRKLIG RY+N+G
Sbjct: 153 YGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKDV----PCNRKLIGARYFNKG 208
Query: 197 QIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRA 256
+ + +++ Y T RD DGHG+H STA GNFV +VFG G GTA GGSP+A
Sbjct: 209 YLAYTGLPSNASY-----ETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKA 263
Query: 257 RLASYKSCWN-VNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAI 315
R+A+YK CW V+G +C D+DIL+A + AI DGVDVLS S+G + +Y D IAI
Sbjct: 264 RVAAYKVCWPPVDGA--ECFDADILAAIEAAIEDGVDVLSASVGGDAG---DYMSDGIAI 318
Query: 316 GSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI 375
GSFHA+ +G+ VV +AGN GPK TV N+APW++TVGAS+MDREF ++V L + Q FK
Sbjct: 319 GSFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGT 378
Query: 376 -MQGPLTQ---HSMI---------GN----LECNPGAIDPKKINGKILLCMNHTHG-IDK 417
+ PL + +S+I GN L C G++DPKK+ GKIL+C+ + +DK
Sbjct: 379 SLSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDK 438
Query: 418 SXXXXXXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSD 477
+L N K NE + + LP S +++ D +++ +Y +S K+P +
Sbjct: 439 GMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKA 498
Query: 478 VKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537
NTKP+P M FSSRGP+TI P I+KPDITAPGV IIAA++EA P+ SD+RR
Sbjct: 499 PTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRT 558
Query: 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLK 597
PFN GTSMS PHISG+ GLLKTLHP WSPAAI+SAIM K P+ D K
Sbjct: 559 PFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRK-PMVDESFKK 617
Query: 598 ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFS 657
A PF YG+GHV PN A PGLVYDL+ DYL ++C+ GYN +++ F ++C + +
Sbjct: 618 ANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGAN 677
Query: 658 ILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGE 717
+LDFNYP+I +P+L S+T+TR++KNVG ++Y A P L+F + GE
Sbjct: 678 LLDFNYPSITVPNLTGSITVTRKLKNVGPP-ATYNARFREPLGVRVSVEPKQLTFNKTGE 736
Query: 718 ERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSDGLHH 755
+ F++T P + P Y+FG+L W+DS HH
Sbjct: 737 VKIFQMTLRP---LPVTPSG--YVFGELTWTDS---HH 766
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
Identities = 361/749 (48%), Positives = 481/749 (64%)
Query: 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAIL 84
SY+VY G HSH T D ++R + H++FLGSF GS ++A D+I SY +HINGFAA L
Sbjct: 31 SYVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHL 90
Query: 85 EEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIG 144
+ + A +++KHPEV+S+F ++ K+ TTRSWDFLGLE ++ + +S W K RFGED II
Sbjct: 91 DHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIA 150
Query: 145 VIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQ 204
+D+GVWPESKSF DEG+GP+P RW+GICQN F CNRKLIG RY+N+G
Sbjct: 151 NLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKLIGARYFNKGYAAAVGHL 210
Query: 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSC 264
NSSF +P RDLDGHG+H STA G+FV VS+FG G GTAKGGSPRAR+A+YK C
Sbjct: 211 NSSF-DSP-----RDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVC 264
Query: 265 WN-VNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG-EPSHKNTEYFKDAIAIGSFHAMM 322
W V G +C D+D+L+AFD AIHDG DV+SVSLG EP T +F D++AIGSFHA
Sbjct: 265 WPPVKGN--ECYDADVLAAFDAAIHDGADVISVSLGGEP----TSFFNDSVAIGSFHAAK 318
Query: 323 HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK-EIMQGPLT 381
I+VV +AGN GP TV N+APW +TVGASTMDREF S + LG+ + +K + +
Sbjct: 319 KRIVVVCSAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTAL 378
Query: 382 QHS----MIGNLE-------------CNPGAIDPKKINGKILLCMNHTHG-IDKSXXXXX 423
H+ ++ ++ C G++DP K GKIL+C+ +G ++K
Sbjct: 379 PHAKFYPIMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLRGQNGRVEKGRAVAL 438
Query: 424 XXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFN 483
+L N N+ L P+ LP + + D+ ++ Y + K P+A ++ +T+
Sbjct: 439 GGGIGMVLENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLG 498
Query: 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACF 543
KP+P M FSS+GPS + P I+KPDITAPGV +IAAY+ AV+P+ D RR+ FNA
Sbjct: 499 LKPAPVMASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRLLFNAIS 558
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFEY 603
GTSMS PHISGIAGLLKT +P WSPAAI+SAIM PI + +KATPF +
Sbjct: 559 GTSMSCPHISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDI-PGPIQNATNMKATPFSF 617
Query: 604 GAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIH-SCPKSFSILDFN 662
GAGHV PN A++PGLVYDL DYL+++CS GYN S I+ F+ S PK S+++ N
Sbjct: 618 GAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGNNFTCSSPK-ISLVNLN 676
Query: 663 YPTIAIPDLNES-VTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGEERTF 721
YP+I +P+L S VT++R VKNVG S Y P +L+FT+ GE++TF
Sbjct: 677 YPSITVPNLTSSKVTVSRTVKNVG-RPSMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTF 735
Query: 722 KVTFTPER-NVEPKPKAEKYIFGKLIWSD 749
KV + NV A+ Y+FG+L+WSD
Sbjct: 736 KVILVKSKGNV-----AKGYVFGELVWSD 759
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 329/755 (43%), Positives = 461/755 (61%)
Query: 26 YIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILE 85
YIVYLG+H +G + +A++ RA HH+ LGS GS + A+D+I SY ++INGFAA LE
Sbjct: 19 YIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLE 78
Query: 86 EEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGV 145
EE A Q+A+HP+V+++ K+ TTRSWDF+ +E+D I +S W GRFG+DVII
Sbjct: 79 EEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGRFGQDVIIAN 138
Query: 146 IDSGVWPESKSFSDEGM-GPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQ 204
+DSGVWPES SF+DE + G VP RW+G C + YG CN+KLIG RY+N+ +
Sbjct: 139 LDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNKDML----LS 194
Query: 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSC 264
N + + +RD +GHGTH STA G FV S+FG GTAKGG+PRAR+A+YK C
Sbjct: 195 NPG---AVDGNWSRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKVC 251
Query: 265 WNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNT--EYFKDAIAIGSFHAMM 322
W+ G+ C +D+L+ F+ AIHDG DV+SVS G+ + T + ++ + +GS HA M
Sbjct: 252 WS--GE---CAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAM 306
Query: 323 HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQ 382
+G+ VV +AGN GP DTVVN APW+ TV AST+DR+F + VTLG+ + T
Sbjct: 307 NGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSLETTTL 366
Query: 383 HS-----MIGNLE-------------CNPGAIDPKKINGKILLCMN--HTHGIDKSXXXX 422
HS MI + C PG +DP+K+ KI++C+ + K
Sbjct: 367 HSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDIPRVTKGMTVL 426
Query: 423 XXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEF 482
IL N + ++ + P+ LP +++ + +A S+ Y +S KNPVA++S KTE
Sbjct: 427 NAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSKTEV 486
Query: 483 NTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNAC 542
K SP + FSSRGPS P ++KPDI APGV+I+AA++E V+P++ P+D+RR +
Sbjct: 487 GVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEYAIL 546
Query: 543 FGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFE 602
GTSM+ PHISG+ GLLK P+WSPAA++SAIM G P+ D+DG +AT F
Sbjct: 547 SGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGA-PMRDHDGREATAFA 605
Query: 603 YGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSIL-DF 661
+GAG+++PN A+DPGLVYDLS DY ++CS G+N S + + +CP+ + D
Sbjct: 606 FGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNF-TCPEKVPPMEDL 664
Query: 662 NYPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGEERTF 721
NYP+I +P L + T+ RR+K VG ++Y A P L F + GE + F
Sbjct: 665 NYPSIVVPALRHTSTVARRLKCVG-RPATYRATWRAPYGVNMTVEPAALEFGKDGEVKEF 723
Query: 722 KVTFTPERNVEPKPKAEK-YIFGKLIWSDSDGLHH 755
KVTF E K K K Y+FG+L+WSD G HH
Sbjct: 724 KVTFKSE-----KDKLGKGYVFGRLVWSD--GTHH 751
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
Identities = 331/760 (43%), Positives = 451/760 (59%)
Query: 23 KKSYIVYLGTHSHGKN---PTADDIN------RARNHHHNFLGSFFGSVKKARDSISCSY 73
K+SY+VYLG H+HG+ A D++ +A + H L G +KAR++I SY
Sbjct: 37 KQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAREAIFYSY 96
Query: 74 GRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWN 133
RHINGFAA L+ A ++A+ P V+S+F + G K+ TTRSW FLGL +AW
Sbjct: 97 TRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAPTGAAWK 156
Query: 134 KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYY 193
K RFGED IIG +D+GVWPES+SF D+G+GP+P WRG CQ F CNRKLIG R++
Sbjct: 157 KARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKLIGARFF 216
Query: 194 NQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGS 253
N+G N+S + TP RD DGHGTH STA G VA SVFG G GTA GGS
Sbjct: 217 NKGYASAVGNLNTSLFDTP-----RDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGGS 271
Query: 254 PRARLASYKSCWN-VNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDA 312
P AR+A+Y+ C+ VNG +C D+DIL+AFD AIHDGV VLSVSLG + +YF D
Sbjct: 272 PMARVAAYRVCYTPVNGS--ECFDADILAAFDAAIHDGVHVLSVSLGGDAG---DYFADG 326
Query: 313 IAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIF 372
+AIGSFHA+ HGI VV +AGN GP P TV N+APWL T ASTMDREF +YV D ++
Sbjct: 327 LAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDREFPAYVVFNDTKLK 386
Query: 373 KEIMQG----------PLTQHSMIGNLE--------CNPGAIDPKKINGKILLCMNHTHG 414
+ + P+ S+ + C G++DP+K+ GKI++C+ +
Sbjct: 387 GQSLSASALSPASSSFPMIDSSLAASPNRTQNESQLCFLGSLDPEKVKGKIVVCLRGVNP 446
Query: 415 -IDKSXXXXXXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVA 473
++K +L N NE + + LP + ++F D Q + +Y + K+P
Sbjct: 447 RVEKGEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSDGQILFSYLKNTKSPAG 506
Query: 474 SVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSD 533
+++ +T TKP+P M FSS+GP+T+ P I+KPDITAPGV ++AA++ A AP+ D
Sbjct: 507 TITRPETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSVVAAWTRASAPTDLAFD 566
Query: 534 DRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDY 593
RR+ FN+ GTSMS PH++G+ GLL+TL PDWSPAAI+SA+M ++ I +
Sbjct: 567 KRRVAFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVDNE-RHAILNS 625
Query: 594 DGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTT---PEIH 650
A PF +GAGHV+P AM+PGLVYDL+ DYL+++CS YN +++ F
Sbjct: 626 SFAAANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNATVMAMFAGGGGAAPF 685
Query: 651 SCPKSF-SILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNN 709
CP S + D NYP+I + +L S T+ R VKNVG Y+A P+
Sbjct: 686 RCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVGKPGV-YKAYVTSPAGVRVTVSPDT 744
Query: 710 LSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
L F GE++TF+V F V A Y FG L+W++
Sbjct: 745 LPFLLKGEKKTFQVRF----EVTNASLAMDYSFGALVWTN 780
|
|
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 2.1e-141, Sum P(3) = 2.1e-141
Identities = 132/298 (44%), Positives = 187/298 (62%)
Query: 134 KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQ-CNRKLIGMRY 192
K + G+ +I+GV+DSGVWPESKSF+D+GMGPVP W+GICQ + CNRK+IG RY
Sbjct: 147 KAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSHCNRKIIGARY 206
Query: 193 YNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGN-GYGTAKG 251
Y +G + A N++ + + RD DGHG+H ASTAVG V S G G+A G
Sbjct: 207 YVKGYERYYGAFNAT--ANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGGFAKGSASG 264
Query: 252 GSPRARLASYKSCW-NVNGQPLD---CRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTE 307
G+P ARLA YK+CW N + ++ C + D+L+A DDAI DGV V+S+S+G + +
Sbjct: 265 GAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG--TTEPFP 322
Query: 308 YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLG 367
+ +D IA+G+ HA+ I+V A+AGN GPKP T+ NLAPW++TVGAST+DR F + LG
Sbjct: 323 FTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFVGGLVLG 382
Query: 368 D------EQI--FKEIMQGPLTQHSMI---G-----NLECNPGAIDPKKINGKILLCM 409
+ + I FK PL S + G +C P ++ P+ ++GK++LC+
Sbjct: 383 NGYTIKTDSITAFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKVVLCL 440
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 300/752 (39%), Positives = 417/752 (55%)
Query: 26 YIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILE 85
YIVY+G HG P + A HH L + GS + A D+I SY +GFAA+L
Sbjct: 27 YIVYMGERHHGLRPEL--VQEA---HHGMLAAVLGSEQAAMDAILYSYRHGFSGFAAVLT 81
Query: 86 EEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGV 145
A +L+ P V+ + + + TTRSWDF+G+ S + RFGED IIGV
Sbjct: 82 GGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGVNPSP--SGGGILLESRFGEDSIIGV 139
Query: 146 IDSGVWPESKSFSDEGMGPVPLRWRGIC-QNDTHYGFQCNRKLIGMRYYNQG-QIEHARA 203
+D+G+WPES SF D+G+G VP RW+G C + CNRK+IG ++Y +G + E+ +
Sbjct: 140 LDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGYEAEYGKM 199
Query: 204 QNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263
S Y E +ARD GHGTH ASTA G VAN S G G A+GG+ RARLA YK
Sbjct: 200 NTSDIY---EFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLAVYKV 256
Query: 264 CWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH 323
CW G DC +DIL+AFDDAIHDGVDV+SVSLG+ + Y D ++IGSFHA+
Sbjct: 257 CW-ATG---DCTAADILAAFDDAIHDGVDVISVSLGQ-APPLPAYVDDVLSIGSFHAVAK 311
Query: 324 GILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIF--KEIMQGPLT 381
G++VV +AGN GP +TV+N APW++TV A T+DR F + + LG+ + + + G
Sbjct: 312 GVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTLYSGKHP 371
Query: 382 QHSM-------IG--NLE------CNPGAIDPKKINGKILLCMNHTHGIDKSXXXXXXXX 426
S+ I N + C G+++ + G ++LC S
Sbjct: 372 SKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVKK 431
Query: 427 XXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKP 486
+ V Q + + +P V++ +I+AY S++NPVA S KT
Sbjct: 432 ARGVGVIFAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGELV 491
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
+P++ +FSSRGPS+++P+I+KPDI APGV I+AA+S A A S + + F GTS
Sbjct: 492 APEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSAIGS---VNFKIDSGTS 548
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLK-ATPFEYGA 605
MS PHISG+ LLK++HP+WSPAA+KSA++ G +++ A PF+YG
Sbjct: 549 MSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYGG 608
Query: 606 GHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSC---PKSFSILDFN 662
GHVNPN A PGLVYD+ DY+ ++CS GYN S I++ T + +C PKS L+ N
Sbjct: 609 GHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQT-TCQHTPKSQ--LNLN 665
Query: 663 YPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGEERTFK 722
P+I IP+L +T++R V NVG S Y A P+ L+F + FK
Sbjct: 666 VPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRKLPFK 725
Query: 723 VTFTPERNVEPKPKAEKYIFGKLIWSDSDGLH 754
VTF + V+ + Y FG L W D G H
Sbjct: 726 VTFQAKLKVKGR-----YTFGSLTWED--GTH 750
|
|
| TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 297/755 (39%), Positives = 421/755 (55%)
Query: 24 KSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAI 83
K +IVYLG H D HH L S GS K A DS+ SY +GFAA
Sbjct: 31 KVHIVYLGEKKH------HDPEFVTESHHQMLASLLGSKKDADDSMVYSYRHGFSGFAAK 84
Query: 84 LEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVII 143
L + A+++A PEV+ + D ++ TTR+W++LGL N + N G+ VII
Sbjct: 85 LTKSQAKKIADLPEVVHVIPDGFHELATTRTWEYLGLSSAN---PKNLLNDTNMGDQVII 141
Query: 144 GVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHY-GFQCNRKLIGMRYYNQGQIEHAR 202
GVID+GVWPES+SF+D G+GP+P +W+G C++ ++ CNRKLIG +Y+ G +
Sbjct: 142 GVIDTGVWPESESFNDNGVGPIPRKWKGGCESGENFRSTDCNRKLIGAKYFINGFL---- 197
Query: 203 AQNSSFYPTP--EHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLAS 260
A+N F T ++ +ARD DGHGTH AS A G+FV NVS G GT +GG+PRAR+A
Sbjct: 198 AENKGFNTTESRDYISARDFDGHGTHVASIAGGSFVPNVSYKGLAGGTLRGGAPRARIAM 257
Query: 261 YKSCW-NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL-GE-PSHKNTEYFKDAIAIGS 317
YK+CW + + + C DSDI+ A D+AIHDGVDVLS+SL G+ P + T+ +D A G
Sbjct: 258 YKACWFHEELKGVTCSDSDIMKAIDEAIHDGVDVLSISLVGQIPLNSETD-IRDEFATGL 316
Query: 318 FHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIF--KEI 375
FHA+ GI+VV A GN+GP TVVN+APW+LTV A+T+DR F + +TLG+ ++ +
Sbjct: 317 FHAVAKGIVVVCAGGNDGPAAQTVVNIAPWILTVAATTLDRSFPTPITLGNNKVILGQAT 376
Query: 376 MQGP-LTQHSMI------GNLECNPGAIDPKKING------KILLCM--NHTHG-IDKSX 419
GP L S++ N E G + +N K++LC + T+ I ++
Sbjct: 377 YTGPELGLTSLVYPENARNNNETFSGVCESLNLNPNYTMAMKVVLCFTASRTNAAISRAA 436
Query: 420 XXXXXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVK 479
++++ + S P P V+++ I++Y S ++PV + +
Sbjct: 437 SFVKAAGGLGLIISRNPVYTLS-PCNDDFPCVAVDYELGTDILSYIRSTRSPVVKIQRSR 495
Query: 480 TEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP- 538
T ++ FSSRGP++++P I+KPDI APGV I+AA SP+D +
Sbjct: 496 TLSGQPVGTKVVNFSSRGPNSMSPAILKPDIAAPGVRILAA--------TSPNDTLNVGG 547
Query: 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLKA 598
F GTSM+TP ISG+ LLK LHP+WSPAA +SAI+ G+ + K
Sbjct: 548 FAMLSGTSMATPVISGVIALLKALHPEWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKV 607
Query: 599 T-PFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSC--PKS 655
+ PF+YG G VNP A +PGL+YD+ DY+ Y+CS GYN S I+ +I C PK
Sbjct: 608 SDPFDYGGGIVNPEKAAEPGLIYDMGPQDYILYLCSAGYNDSSISQLVG-QITVCSNPKP 666
Query: 656 FSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEY 715
S+LD N P+I IP+L + VT+TR V NVG +S Y+ + P L F
Sbjct: 667 -SVLDVNLPSITIPNLKDEVTLTRTVTNVGLVDSVYKVSVEPPLGVRVVVTPETLVFNS- 724
Query: 716 GEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750
+T V+FT + K Y FG L W+DS
Sbjct: 725 ---KTISVSFTVRVSTTHKINTG-YYFGSLTWTDS 755
|
|
| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 218/565 (38%), Positives = 318/565 (56%)
Query: 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW-NVNGQ 270
PE +ARD GHG+H ASTA GN V +VS +G G GTA+GG P AR+A YK C V+G
Sbjct: 196 PE--SARDYMGHGSHTASTAAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDG- 252
Query: 271 PLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAA 330
C IL+AFDDAI D VD++++S+G ++ + +D IAIG+FHAM GIL+V +
Sbjct: 253 ---CTTDGILAAFDDAIADKVDIITISIG--GDNSSPFEEDPIAIGAFHAMAKGILIVNS 307
Query: 331 AGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD-EQIFKEI----MQG---PL-- 380
AGN GP+P TV ++APW+ TV AS +R F + V LG+ + + + + + G PL
Sbjct: 308 AGNSGPEPSTVASIAPWMFTVAASNTNRAFVTKVVLGNGKTVGRSVNSFDLNGKKYPLVY 367
Query: 381 --TQHSMIGNLE---CNPGAIDPKKINGKILLCMNHTHGIDKSXXXXXXXXXXXILVNPK 435
+ S G C+PG +D K++ GKI+LC + D++ +V
Sbjct: 368 GKSASSSCGAASAGFCSPGCLDSKRVKGKIVLC-DSPQNPDEAQAMGAIAS----IVRSH 422
Query: 436 QLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSS 495
+ + S+ + P S++ DD ++++Y NS KNP A+V +T FN + +P + + S
Sbjct: 423 RTDVASI---FSFPVSVLLEDDYNTVLSYMNSTKNPKAAVLKSETIFNQR-APVVASYFS 478
Query: 496 RGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGI 555
RGP+TI P+I+KPDITAPG EI+AAYS PS S D RR+ ++ GTSMS PH++G+
Sbjct: 479 RGPNTIIPDILKPDITAPGSEIVAAYSPDAPPSIS--DTRRVKYSVDTGTSMSCPHVAGV 536
Query: 556 AGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
A LK+ HP WSP+ I+SAIM +P + F YGAGHV+P +A+
Sbjct: 537 AAYLKSFHPRWSPSMIQSAIMTTAWPMNAS-TSPFNEL-----AEFAYGAGHVDPITAIH 590
Query: 616 PGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPK--SFSI-LDFNYP--TIAIPD 670
PGLVY+ + D+++++C Y + + + SC K + S+ + NYP T +
Sbjct: 591 PGLVYEANKSDHIAFLCGLNYTAKNLR-LISGDSSSCTKEQTKSLPRNLNYPSMTAQVSA 649
Query: 671 LNESVTITRR-VKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGEERTFKVTFTPER 729
I RR V NVG N++Y+A P LS E+++F VT +
Sbjct: 650 AKPFKVIFRRTVTNVGRPNATYKAKVVGSKLKVKVV-PAVLSLKSLYEKKSFTVTASGAG 708
Query: 730 NVEPKPKAEKYIFGKLIWSDSDGLH 754
PKAE + +LIWSD G+H
Sbjct: 709 -----PKAENLVSAQLIWSD--GVH 726
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| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 281/706 (39%), Positives = 391/706 (55%)
Query: 73 YGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAW 132
Y +GF+A++ + A L HP VL++F D R++ TTRS FLGL+ +Q W
Sbjct: 62 YHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLGLQ-----NQKGLW 116
Query: 133 NKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQ-CNRKLIGMR 191
++ +G DVIIGV D+G+WPE +SFSD +GP+P RWRG+C++ + + CNRK+IG R
Sbjct: 117 SESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARFSPRNCNRKIIGAR 176
Query: 192 YYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKG 251
++ +GQ A T E + RD DGHGTH +STA G S+ G G AKG
Sbjct: 177 FFAKGQ---QAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYASGVAKG 233
Query: 252 GSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKD 311
+P+AR+A+YK CW +G C DSDIL+AFD A+ DGVDV+S+S+G + Y+ D
Sbjct: 234 VAPKARIAAYKVCWKDSG----CLDSDILAAFDAAVRDGVDVISISIGGGDGITSPYYLD 289
Query: 312 AIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQI 371
IAIGS+ A GI V ++AGNEGP +V NLAPW+ TVGAST+DR F + LGD
Sbjct: 290 PIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGDGHR 349
Query: 372 FKEI-------MQG---PLTQHSMIGNLE---CNPGAIDPKKINGKILLC-MNHTHGIDK 417
+ + + G P+ G C +DPK++ GKI++C + + K
Sbjct: 350 LRGVSLYAGVPLNGRMFPVVYPGKSGMSSASLCMENTLDPKQVRGKIVICDRGSSPRVAK 409
Query: 418 SXXXXXXXXXXXILVNPKQLENESLPLPYHL-PTSLVEFDDAQSIIAYNNSIKNPVASVS 476
IL N E L HL P V ++ I AY +S NP+AS+
Sbjct: 410 GLVVKKAGGVGMILANGAS-NGEGLVGDAHLIPACAVGSNEGDRIKAYASSHPNPIASID 468
Query: 477 DVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRR 536
T KP+P + FS RGP+ ++P I+KPD+ APGV I+AA+++AV P+ PSD R+
Sbjct: 469 FRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTGLPSDPRK 528
Query: 537 IPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGL 596
FN GTSM+ PH+SG A LLK+ HPDWSPA I+SA+M ++ I + G
Sbjct: 529 TEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNRSLIDESTGK 588
Query: 597 KATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCP--K 654
ATP++YG+GH+N AM+PGLVYD++ DY++++CS GY I T + CP +
Sbjct: 589 SATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQVITRTPVR-CPTTR 647
Query: 655 SFSILDFNYPTI-AIPDLNE----SVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNN 709
S + NYP+I A+ N S T+ R NVG + Y A P
Sbjct: 648 KPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRARIESPRGVTVTVKPPR 707
Query: 710 LSFTEYGEERTFKVTFTPE-RNVEPKPKAEKYIFGKLIWSDSDGLH 754
L FT + R++ VT T RNV +FG + W D G H
Sbjct: 708 LVFTSAVKRRSYAVTVTVNTRNVVLGETGA--VFGSVTWFDG-GKH 750
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| TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
Identities = 292/753 (38%), Positives = 411/753 (54%)
Query: 24 KSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAI 83
K +IVYLG H DD HH L S GS A +S+ SY +GFAA
Sbjct: 28 KVHIVYLGEKQH------DDPEFVSESHHQMLSSLLGSKVDAHESMVYSYRHGFSGFAAK 81
Query: 84 LEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVII 143
L E A++LA PEV+ + D ++ TTR+WD+LGL +V + N+ N G+ VII
Sbjct: 82 LTESQAKKLADSPEVVHVMADSFYELATTRTWDYLGL---SVANPNNLLNDTNMGDQVII 138
Query: 144 GVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHY-GFQCNRKLIGMRYYNQGQIEHAR 202
G ID+GVWPES+SF+D G+GP+P W+G C++ + CNRKLIG +Y+ G +
Sbjct: 139 GFIDTGVWPESESFNDNGVGPIPSHWKGGCESGEKFISTNCNRKLIGAKYFINGFL---- 194
Query: 203 AQNSSFYPTP--EHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLAS 260
A+N F T ++ +ARD GHGTH AS A G+FV N+S G G +GG+PRAR+A
Sbjct: 195 AENEGFNTTESRDYISARDFIGHGTHTASIAGGSFVPNISYKGLAGGNLRGGAPRARIAI 254
Query: 261 YKSCWNVNGQ-PLDCRDSDILSAFDDAIHDGVDVLSVSLGE--PSHKNTEYFKDAIAIGS 317
YK+CW V+ + C SDIL A D+++HDGVDVLS+SLG P + T+ +D IA G+
Sbjct: 255 YKACWYVDQLGAVACSSSDILKAMDESMHDGVDVLSLSLGAQIPLYPETD-LRDRIATGA 313
Query: 318 FHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIF----- 372
FHA+ GI+VV A GN GP TV+N APW++TV A+T+DR F + +TLG+ ++
Sbjct: 314 FHAVAKGIIVVCAGGNSGPAAQTVLNTAPWIITVAATTLDRSFPTPITLGNRKVILGQAL 373
Query: 373 ---KEIMQGPLTQHSMIG-NLECNPGAIDPKKIN------GKILLCMN-HT--HGIDKSX 419
+E+ L G E G + +N GK++LC +T + ++
Sbjct: 374 YTGQELGFTSLVYPENAGFTNETFSGVCERLNLNPNRTMAGKVVLCFTTNTLFTAVSRAA 433
Query: 420 XXXXXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVK 479
+++ N + P P ++++ ++ Y S ++PV + +
Sbjct: 434 SYVKAAGGLGVIIARNPGYNLT-PCRDDFPCVAIDYELGTDVLLYIRSTRSPVVKIQPSR 492
Query: 480 TEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539
T ++ FSSRGP++I+P I+KPDI APGV I+AA S P + S F
Sbjct: 493 TLVGQPVGTKVATFSSRGPNSISPAILKPDIGAPGVSILAATS----PDSNSSVGG---F 545
Query: 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGLK-A 598
+ GTSM+ P ++G+ LLK LHP+WSPAA +SAI+ G+ + K A
Sbjct: 546 DILAGTSMAAPVVAGVVALLKALHPNWSPAAFRSAIVTTAWRTDPFGEQIFAEGSSRKVA 605
Query: 599 TPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFT-TPEIHSCPKSFS 657
PF+YG G VNP A DPGL+YD+ DY+ Y+CS GYN S I + S PK+ S
Sbjct: 606 DPFDYGGGIVNPEKAADPGLIYDMGPRDYILYLCSAGYNDSSITQLVGNVTVCSTPKT-S 664
Query: 658 ILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYEANXXXXXXXXXXXXPNNLSFTEYGE 717
+LD N P+I IPDL + VT+TR V NVGT +S Y+ P L F
Sbjct: 665 VLDVNLPSITIPDLKDEVTLTRTVTNVGTVDSVYKVVVEPPLGIQVVVAPETLVFNS--- 721
Query: 718 ERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750
+T V+FT + K Y FG LIW+DS
Sbjct: 722 -KTKNVSFTVRVSTTHKINTGFY-FGNLIWTDS 752
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01400040 | hypothetical protein (775 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 755 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 6e-21 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-20 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-19 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 8e-18 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-13 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 9e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-12 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 5e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-10 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 5e-10 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 6e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-09 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-09 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-09 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 5e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 9e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-08 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-08 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-07 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-07 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 7e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 6e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 8e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 1e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 6e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 9e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 0.001 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 0.001 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 0.001 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.002 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-108
Identities = 121/250 (48%), Positives = 146/250 (58%), Gaps = 16/250 (6%)
Query: 108 KVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPL 167
++ TTRS DFLGL S GE +IIGV+D+G+WPE SF+D G GP P
Sbjct: 2 QLHTTRSPDFLGLPG---AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPH 58
Query: 168 RWRGICQ-NDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTH 226
W G C + F CN KLIG RY++ G A F E+ + RD DGHGTH
Sbjct: 59 TWPGDCVTGEDFNPFSCNNKLIGARYFSDG----YDAYGG-FNSDGEYRSPRDYDGHGTH 113
Query: 227 AASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA 286
ASTA GN V N SV G +GTA G +PRAR+A YK CW G C SDIL+A D A
Sbjct: 114 TASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG----CFGSDILAAIDQA 169
Query: 287 IHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAP 346
I DGVDV+S S+G S ++D IAI HA+ GI V A+AGN GP TV N+AP
Sbjct: 170 IADGVDVISYSIGGGSPD---PYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAP 226
Query: 347 WLLTVGASTM 356
W+ TV AST+
Sbjct: 227 WVTTVAASTL 236
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 2e-30
Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD 565
+KPDI APGV+I+AA++ P D R F GTSM++PH++G+A LLK+ HPD
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 566 WSPAAIKSAIMTTAT 580
WSPAAIKSA+MTTA
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 483 NTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNAC 542
+ + + SSRGP T + + IKPDI APGV+I++ S +
Sbjct: 185 DVAEADTVGPSSSRGPPTSD-SAIKPDIVAPGVDIMSTAPG--------SGTGYARMS-- 233
Query: 543 FGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFE 602
GTSM+ PH++G A LLK HPDWSPA IK+A+M TA + DG+
Sbjct: 234 -GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDS--------DGVVYPVSR 284
Query: 603 YGAGHVNPNSA 613
GAG V+ A
Sbjct: 285 QGAGRVDALRA 295
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-21
Identities = 73/226 (32%), Positives = 98/226 (43%), Gaps = 50/226 (22%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQND-THYGFQ----CNRKLIGMRY 192
G+ V + VID+G+ D TH N K+ G Y
Sbjct: 1 GKGVKVAVIDTGI-------------------------DYTHPDLGGPGFPNDKVKG-GY 34
Query: 193 YNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGG 252
P + S A D GHGTH A GN G GT KG
Sbjct: 35 DFVDDDYDPMDTRPYPSPLGDAS-AGDATGHGTHVAGIIAGN--------GVNVGTIKGV 85
Query: 253 SPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDA 312
+P+A L +YK G I++A + A+ DG+DV+++SLG N DA
Sbjct: 86 APKADLYAYKVL-GPGGS---GTTDVIIAAIEQAVDDGMDVINLSLGSSV--NGPDDPDA 139
Query: 313 IAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTM 356
IAI + A+ G++VVAAAGN GP P T+ + AP +TVGAST+
Sbjct: 140 IAINN--AVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-20
Identities = 58/237 (24%), Positives = 83/237 (35%), Gaps = 59/237 (24%)
Query: 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEH 200
V + VID+GV P+ G +N
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGP----------------------- 37
Query: 201 ARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLAS 260
+ D +GHGTH A + V G +P A+L
Sbjct: 38 --------------TDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIP 74
Query: 261 YKSCWNVNGQPLDCRDSDILSAFDDAIHD-GVDVLSVSLGEPSHKNTEYFKDAIAIGSFH 319
K SDI +A D A D G DV+++SLG P + +AI +
Sbjct: 75 VKVLDGDGS----GSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----Y 126
Query: 320 AM-MHGILVVAAAGNEGPKPDTVVN---LAPWLLTVGASTMDREFTSYVTLGDEQIF 372
A+ G+LVVAAAGN+GP T + +P ++ VGA D S + G +
Sbjct: 127 ALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVD 183
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 472 VASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSP 531
V +V D N +++FSSRGP IKPD+ APG I++ S P
Sbjct: 167 VGAVDD-----NGPHDDGISYFSSRGP--TGDGRIKPDVVAPGENIVSCRSPGGNPGAGV 219
Query: 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580
GTSM+TPH+SG LL +P +P +K + TAT
Sbjct: 220 GSGYF----EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 8e-18
Identities = 55/239 (23%), Positives = 86/239 (35%), Gaps = 69/239 (28%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
G+ + + V+D+G+ F R + + N
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD-------------------------GRIIRFADFVNTVN 35
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
+T D +GHGTH A G+ A G KG +P A
Sbjct: 36 ---------------GRTTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGAN 73
Query: 258 LASYKSCWNVNGQPLDCRDSDILSAFDDAI----HDGVDVLSVSLGEPSHKNTEYFKDAI 313
L K V +SDI++ D + + V+++SLG P Y +D +
Sbjct: 74 LVGVK----VLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP--SYGEDPL 127
Query: 314 AIGSFHAMMH----GILVVAAAGNEGPKPDTVV---NLAPWLLTVGASTMDREFTSYVT 365
A+ GI+VV AAGN GP P T+ N +P ++TVGA + ++
Sbjct: 128 C----QAVERLWDAGIVVVVAAGNSGPGPGTITSPGN-SPKVITVGAVDDNGPHDDGIS 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-16
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 363 YVTLGDEQIFK--EIMQGPLTQHSMIGNL---------ECNPGAIDPKKINGKILLCMNH 411
VTLG+ + + G L + ++ C PG++DP K+ GKI+LC
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC--- 57
Query: 412 THG-----IDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNN 466
G + K AG AG+IL N + + + LP V+++D +I++Y N
Sbjct: 58 DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
Query: 467 SIKNPVASV 475
S NP A++
Sbjct: 118 STSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 487 SPQMTFFSSRG---------PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537
+ +FSS G P + KPD+ APGV++ +A A +
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGA-----NGDGQ--- 212
Query: 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTA 579
+ GTSM+ PH++G+A LL HPD SP IK A+ TA
Sbjct: 213 -YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
+ FS+ G KPDI APG I+ S +++ GTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNIL----------SSGPGGDLGGYDSHSGTSMA 222
Query: 549 TPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608
P ++G A LL + +P +P +++ ++TTAT G + +G G +
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLD------------RSFGYGLL 270
Query: 609 NPNSAMD 615
N A+
Sbjct: 271 NLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 31/154 (20%)
Query: 465 NNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI-IKPDITAPGVEIIAAYSE 523
+ + + V +V+ + QM+ FSS GP+ P++ +KPDITAPG I + ++
Sbjct: 209 SPATADDVLTVASANKKVPNPNGGQMSGFSSWGPT---PDLDLKPDITAPGGNIYSTVND 265
Query: 524 AVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGL----LKTLHPDWSPA----AIKSAI 575
S GTSM++PH++G + L LK +P S +K+ +
Sbjct: 266 NTYGYMS-------------GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLL 312
Query: 576 MTTATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609
M TAT ++ +P GAG ++
Sbjct: 313 MNTATPPL------DSEDTKTYYSPRRQGAGLID 340
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 20/98 (20%)
Query: 483 NTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNAC 542
T + + FS+ G T+ D+ APGV+I+ S SP
Sbjct: 182 ATDSNDALASFSNYGKKTV-------DLAAPGVDIL---------STSPGGGYGYMS--- 222
Query: 543 FGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580
GTSM+TPH++G A LL +L+P+ + A IK AI+++A
Sbjct: 223 -GTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 457 DAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVE 516
A++++ S V++ + + S + FSSRGP+ IKPD+ APG
Sbjct: 170 TAKNVLTVGASNNPSVSNGEGGLGQSDN--SDTVASFSSRGPTY--DGRIKPDLVAPGTG 225
Query: 517 IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLL----------KTLHPDW 566
I++A S + SD + GTSM+TP ++G A LL +P
Sbjct: 226 ILSARSGGGGIGDT-SDSAYTSKS---GTSMATPLVAGAAALLRQYFVDGYYPTKFNP-- 279
Query: 567 SPAAIKSAIMTTA 579
S A +K+ ++ +A
Sbjct: 280 SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVN 268
P+ + D +GHGTH A N G +P A+L S K
Sbjct: 33 DNDPDPTPDDDNNGHGTHVAGIIAAG--------DNNGSGGVGVAPNAKLESVKVLPGSG 84
Query: 269 GQPLDCRDSDILSAFDDAI--HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGIL 326
G DS++ A + A + + V+++SLG + + + A G L
Sbjct: 85 GT-----DSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSL 139
Query: 327 VVAAAGNEGPKPDTVVN----LAPWLLTVGASTMDREFTSY 363
V AAGN G D A ++TVGA T + +
Sbjct: 140 FVVAAGNGGDYADNNPVSDPASANNIITVGAVTENGTIADF 180
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 219 DLDGHGTHAAST--AVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRD 276
D +GHGTH A AVGN NG G A G + ++ K +G
Sbjct: 61 DDNGHGTHVAGIIGAVGN---------NGIGIA-GVAWNVKIMPLKFL-GADGSGTT--- 106
Query: 277 SDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP 336
SD + A D A+ G +++ S G ++ +DAIA A+ GIL VAAAGN+G
Sbjct: 107 SDAIKAIDYAVDMGAKIINNSWGGGGP--SQALRDAIA----RAIDAGILFVAAAGNDGT 160
Query: 337 KPDTVVNL-----APWLLTVGAST 355
D +++V A+
Sbjct: 161 NNDKTPTYPASYDLDNIISVAATD 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 35/213 (16%)
Query: 131 AWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQND-----THYGFQCN 184
W+KG + GE +++ VIDSGV P +F ++ + YG N
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYYN 59
Query: 185 RKLI-GMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFG 243
K+ Y + SS HG H A GN + G
Sbjct: 60 EKVPFAYNYADNNDDILDEDDGSS---------------HGMHVAGIVAGN--GDEEDNG 102
Query: 244 NG-YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
G G A P A+L + K N G D A +DA+ G DV+++SLG +
Sbjct: 103 EGIKGVA----PEAQLLAMKVFSNPEGG--STYDDAYAKAIEDAVKLGADVINMSLGSTA 156
Query: 303 HKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG 335
+ AI G++VV AAGN+G
Sbjct: 157 GFVDLDDPEQQAIKRARE--AGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 43/126 (34%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D GHGT A N G KG +P + SY+ V G S
Sbjct: 51 DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYR----VFGSCGSAESSW 94
Query: 279 ILSAFDDAIHDGVDVLSVSLGE------PSHKNT-EY--FKDAIAIGSFHAMMHGILVVA 329
I+ A DA DGVDV+++SLG + EY +K AI +A G +VVA
Sbjct: 95 IIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN----YAKSKGSIVVA 150
Query: 330 AAGNEG 335
AAGN+G
Sbjct: 151 AAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQP 271
+++ +D +GHGTH A NG G G +P A L + K N +G
Sbjct: 31 DDNNDYQDGNGHGTHVAGIIAA--------LDNGVGVV-GVAPEADLYAVKVL-NDDG-- 78
Query: 272 LDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAA 331
SDI++ + AI +G+D++++SLG PS ++ ++AI +A GILVVAAA
Sbjct: 79 -SGTYSDIIAGIEWAIENGMDIINMSLGGPS--DSPALREAIK--KAYA--AGILVVAAA 131
Query: 332 GNEGPKPDTVVNLA--PWLLTVGASTMDREFTSYVTLGDE 369
GN G + A P ++ VGA + S+ + G E
Sbjct: 132 GNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASFSSTGPE 171
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 492 FFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPH 551
FS RGP T + IKPDI APGV I+ A + GTS++
Sbjct: 361 IFSGRGP-TRD-GRIKPDIAAPGVNILTAS----------PGGGYTTRS---GTSVAAAI 405
Query: 552 ISGIAGLL 559
++G LL
Sbjct: 406 VAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-10
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAIL 84
+YIV + + H + + S+ SY NGFAA L
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKS---WHASSKEEAAGASILY-------SYKHGFNGFAAKL 50
Query: 85 EEEHAQQLAKHPEVLSIFLDEGRKVQ 110
EE A++L KHP+V + D+ ++
Sbjct: 51 TEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 6e-10
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 19/87 (21%)
Query: 492 FFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPH 551
S+ G DI APG +I+++ + + S GTSM+ P
Sbjct: 174 PSSNGGA--------GVDIAAPGGDILSSPTTGGGGYATLS-----------GTSMAAPI 214
Query: 552 ISGIAGLLKTLHPDWSPAAIKSAIMTT 578
++G+A LL + +PD +PA +K+A+++T
Sbjct: 215 VAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 63/267 (23%), Positives = 94/267 (35%), Gaps = 73/267 (27%)
Query: 104 DEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMG 163
D Q W+ + I AW+ G V + V+D+GV P
Sbjct: 4 DPYYSYQ----WNL------DQIGAPKAWDITG-GSGVTVAVVDTGVDP----------- 41
Query: 164 PVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGH 223
TH + ++G + + S A D +GH
Sbjct: 42 -------------THPDLLKVKFVLGYDFVDND------------------SDAMDDNGH 70
Query: 224 GTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAF 283
GTH A N NG G A G +P+A++ K + NG +DI +
Sbjct: 71 GTHVAGIIAAA--TN-----NGTGVA-GVAPKAKIMPVK-VLDANGSGSL---ADIANGI 118
Query: 284 DDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG-PKPDTVV 342
A G V+++SLG ++AI +A G++VVAAAGNEG
Sbjct: 119 RYAADKGAKVINLSLGGGLGSTA--LQEAIN----YAWNKGVVVVAAAGNEGVSSVSY-P 171
Query: 343 NLAPWLLTVGASTMDREFTSYVTLGDE 369
P + V A+ D + S+ G
Sbjct: 172 AAYPGAIAVAATDQDDKRASFSNYGKW 198
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 467 SIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526
++ P A+ + T + + FSSRGPST IKPDI+APGV I
Sbjct: 164 TLNAPPANYPESFAVGATDRNDVLADFSSRGPSTYGR--IKPDISAPGVNI--------- 212
Query: 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP 564
S P + + GTSM+ PH++G+A LL + +P
Sbjct: 213 RSAVPGGG----YGSSSGTSMAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FSS GP+ N +KPD+ APG I++ Y A S GTSM+TP++
Sbjct: 191 FSSWGPT--NELYLKPDVAAPGGNILSTYPLAGGGYAVLS-----------GTSMATPYV 237
Query: 553 SGIAGLLKTL-HPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609
+G A LL H SPA ++ + +TA + T A + GAG VN
Sbjct: 238 AGAAALLIQARHGKLSPAELRDLLASTAKPLPW---SDGTSALPDLAPVAQQGAGLVN 292
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV+I++A+ S + + GTSM+ PH++G+A L +L PD SP
Sbjct: 194 DIFAPGVDILSAWI------GSDTATATLS-----GTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 569 AAIKSAIMTTAT 580
A +K+ ++ AT
Sbjct: 243 AEVKARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 21/86 (24%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FSS GP + ++ APGV+I++ Y P++D + GTSM+TPH+
Sbjct: 165 FSSTGP--------EVELAAPGVDILSTY---------PNND----YAYLSGTSMATPHV 203
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTT 578
+G+A L+ + P+ + A ++ A+ T
Sbjct: 204 AGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D GHGTH A N N YG G +P A L +Y+ V G +
Sbjct: 66 DCQGHGTHVAGIIAAN--------PNAYG-FTGVAPEATLGAYR----VFGCSGSTTEDT 112
Query: 279 ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG 335
I++AF A DG DV++ SLG PS + +D A+ + + G++V AAGN+G
Sbjct: 113 IIAAFLRAYEDGADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 46/235 (19%), Positives = 65/235 (27%), Gaps = 71/235 (30%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
G V +GVIDSG+ F+ R
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG-------------------------------RVSEAS- 29
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
+++ D D HGTH A +G A A
Sbjct: 30 -------YYVAVNDAGYASNGDGDSHGTHVAGVIAAARDGGGM-----HGVAPD----AT 73
Query: 258 LASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIG- 316
L S ++ + G D+DI +A+D GV +++ S G
Sbjct: 74 LYSARASAS-AGSTFS--DADIAAAYDFLAASGVRIINNSWGGNPA-IDTVSTTYKGSAA 129
Query: 317 ---------SFHAMMHGILVVAAAGNEG-PKPDTVVNLAPWL--------LTVGA 353
A G L V AAGN+G P P+L + V A
Sbjct: 130 TQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 9e-09
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 486 PSPQMTFFSSRGPSTI---NPNII-KPDITAP-GVEIIAAYSEAVAPSKSPSDDRRIPFN 540
SS P I P + KPD+TAP GV
Sbjct: 165 DPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGD-------------GPP 211
Query: 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATP 600
FGTS + PH +G+A L+ + +P +PA I+ A+ +TA G YD
Sbjct: 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG------YD------ 259
Query: 601 FEYGAGHVNPNSA 613
G+G V+ + A
Sbjct: 260 NASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 58/241 (24%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
G +++ ID+GV W TH + R + G
Sbjct: 1 GTGIVVANIDTGV-----------------DW-------THPALKNKY-----RGWGGGS 31
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
+H + F P D +GHGTH T VGN +G G G +P AR
Sbjct: 32 ADHD---YNWFDPVGNTPLPYDDNGHGTHTMGTMVGN---------DGDGQQIGVAPGAR 79
Query: 258 LASYKSCWNVNGQP---LDCRDSDILSAFDDAIHD-----GVDVLSVSLGEPSHKNTEYF 309
+ ++ G L C +L+ D A + DV++ S G PS + E+
Sbjct: 80 WIACRALDRNGGNDADYLRCAQW-MLAPTDSAGNPADPDLAPDVINNSWGGPS-GDNEWL 137
Query: 310 KDAIAIGSFHAMMHGILVVAAAGNEGPKP---DTVVNLAPWLLTVGASTMDREFTSYVTL 366
+ A+A ++ A GI V AAGN+GP+ + P VGA+ + + +
Sbjct: 138 QPAVA--AWRAA--GIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSR 193
Query: 367 G 367
G
Sbjct: 194 G 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D GHGTH + T G G G G +P A L K + G S
Sbjct: 41 DAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGGGS-----LSQ 86
Query: 279 ILSAFDDAIHDGVDVLSVSLG--EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP 336
I++ + A+ DV+S+SLG S E +A++ + G L V +AGNEG
Sbjct: 87 IIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQT------GALFVVSAGNEGH 140
Query: 337 KPDTVVNLAPWLLTVGASTMDRE 359
A L+VGA D E
Sbjct: 141 GTSGSPGSAYAALSVGAVDRDDE 163
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 35/154 (22%)
Query: 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
+D GHGTH A T G V G YG A+G A +A G
Sbjct: 40 EDVQDGHGHGTHCAGTIFGRDVP-----GPRYGVARG----AEIALIGKVLGDGGGG--- 87
Query: 275 RDSDILSAFDDAIHDGVDVLSVSLG---------------------EPSHKNTEYFKDAI 313
D IL+ A+ +G DV+S+SLG E + F +
Sbjct: 88 -DGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALM 146
Query: 314 AIGSFHAMM-HGILVVAAAGNEGPKPDTVVNLAP 346
+ + A + G L+VAAAGNE +P + +
Sbjct: 147 TLVAAQAALARGTLIVAAAGNESQRPAGIPPVGN 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Query: 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACF 543
T + FS+ G D++APG I S +P D +
Sbjct: 183 TDQDDKRASFSNYGKWV--------DVSAPGGGI---------LSTTPDGD----YAYMS 221
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATT 581
GTSM+TPH++G+A LL + P S + ++ A+ TA
Sbjct: 222 GTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADD 258
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 61/249 (24%), Positives = 80/249 (32%), Gaps = 58/249 (23%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQ 197
G+ I+GV D+G+ F D N H RK++ RY +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKT---------NLFH------RKIV--RYDSLS- 47
Query: 198 IEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRAR 257
T D+DGHGTH A G N S + Y KG +P+A+
Sbjct: 48 -----------------DTKDDVDGHGTHVAGIIAGK--GNDSSSISLY---KGVAPKAK 85
Query: 258 LASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGS 317
L + D+ F G + S S G P N Y A A
Sbjct: 86 LYFQD---IGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPV--NNGYTLLARAYDQ 140
Query: 318 FHAMMHGILVVAAAGNEGPKPDTVV-------NLAPWLLTVGASTMDREFTSYVTLGDEQ 370
F IL V +AGN+G + N +LTVGAS S G Q
Sbjct: 141 FAYNNPDILFVFSAGNDGNDGSNTIGSPATAKN----VLTVGASNNPS--VSNGEGGLGQ 194
Query: 371 IFKEIMQGP 379
Sbjct: 195 SDNSDTVAS 203
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 55/173 (31%)
Query: 202 RAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASY 261
RA + + + D +GHGTH A T V G YG AK A L +
Sbjct: 46 RAIWGADFVGGD--PDSDCNGHGTHVAGT----------VGGKTYGVAKK----ANLVAV 89
Query: 262 KSCWNVNGQPLDCRD----SDILSAFDDAIHDGVD-----VLSVSLGEPSHKNTEYFKDA 312
K V LDC S I++ + +D V ++SLG + + A
Sbjct: 90 K----V----LDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA---STALDAA 138
Query: 313 IAIGSFHAMMH-GILVVAAAGNEG-------PKPDTVVNLAPWLLTVGASTMD 357
+A A ++ G++VV AAGN P AP +TVGA+ D
Sbjct: 139 VA-----AAVNAGVVVVVAAGNSNQDACNYSPAS------APEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 32/121 (26%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS GP D+ APG I++ SP D + GTS + P +
Sbjct: 193 FSLPGPWV--------DLAAPGENIVSL---------SPGGDGLATTS---GTSFAAPFV 232
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNS 612
SG A L+++ PD + A ++ I TA DH + DY G G V+P +
Sbjct: 233 SGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRDDY---------VGYGVVDPVA 280
Query: 613 A 613
A
Sbjct: 281 A 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 59/215 (27%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLR-WRGICQNDTHYGFQCNRKLIGMRYYNQG 196
G+ V++G+ID+G+ F +E L W Q G G Y +
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWD---QTIP--GGPPPGGYYGGGEYTEE 57
Query: 197 QIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRA 256
I A A ++ + P RD +GHGTH A A GN G+ KG +P A
Sbjct: 58 IINAALASDNPYDIVPS----RDENGHGTHVAGIAAGN--------GDNNPDFKGVAPEA 105
Query: 257 RLA-----SYKSCWNVNGQPLDC-RDSDILSAFDDAIHDGVD-----VLSVSLG--EPSH 303
L K + + +++DI+ A ++ V+++SLG SH
Sbjct: 106 ELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSH 165
Query: 304 KNT---EYFKDAIAIGSFHAMMHGILVVAAAGNEG 335
T E + DAI+ + GI VV AGNEG
Sbjct: 166 DGTSLLERYIDAISR------LRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-07
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 391 CNPGAIDPKKINGKILLCM-NHTHGIDKSQLAAQAGAAGLILVNPKQ---LENESLPLPY 446
C P + + GKI+L ++K++ A +AGAAG+I+ N P
Sbjct: 22 CCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGLGGTVGDPSDV 81
Query: 447 HLPTSLVEFDDAQSI 461
+P + ++D +++
Sbjct: 82 TIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 16/91 (17%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEI-----IAAYSEAVAPSKSPSDDRRIPFNACFGTSM 547
+S+ GP+ D++APG + Y ++ + SP GTSM
Sbjct: 206 YSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQ---GTSM 254
Query: 548 STPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578
+ PH++G+A L+K+++P +PA I+S + +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEI--IAAYSEAVAPSKSPSDDRRIPFNA 541
+ FSS GP+ +KPD+ A G I I +
Sbjct: 180 VDANGNKASFSSIGPTADGR--LKPDVMALGTGIYVINGDGNITYAN------------- 224
Query: 542 CFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTA 579
GTS S P I+G+ L HP+W+ IK AI+ +A
Sbjct: 225 --GTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 68/262 (25%), Positives = 102/262 (38%), Gaps = 72/262 (27%)
Query: 139 EDVIIGVIDSGV-----------WPESKSFS-----DEGMGPVPLRWRGICQNDTH---- 178
+ VI+ V+DSGV W K D+ G + +D +
Sbjct: 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI---------DDVNGWNF 51
Query: 179 YGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVAN 238
G R+++G Y+ + N+ P D D HGTH V +A
Sbjct: 52 LGQYDPRRIVGDDPYD---LTEKGYGNNDVNG-PIS----DAD-HGTH-----VAGIIA- 96
Query: 239 VSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL 298
+V NG G G + ++ NG D RD DI +A A+ +G V+++S
Sbjct: 97 -AVRDNGIGI-DGVADNVKIMPL--RIVPNG---DERDKDIANAIRYAVDNGAKVINMSF 149
Query: 299 GEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN-----------LAPW 347
G+ N E+ DAI +A G+L+V AAGN+G D N A
Sbjct: 150 GKSFSPNKEWVDDAIK----YAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANN 205
Query: 348 LLTVGAS------TMDREFTSY 363
+TVGAS + F++Y
Sbjct: 206 FITVGASSKKYENNLVANFSNY 227
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 482 FNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNA 541
+ S + +SSRGPS KPD+ A G A + + D F+
Sbjct: 213 YLPGGSGDVVSWSSRGPSIAG--DPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDL 267
Query: 542 CFGTSMSTPHISGIAGLL------KTLHPDWSPAAIKSAIMTTA 579
GTSM+TP +G A L+ K ++ P +++ +M+TA
Sbjct: 268 FGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 33/146 (22%), Positives = 47/146 (32%), Gaps = 46/146 (31%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNF-----------VANVSVFGNGYGTAKG 251
A+ P +A HGT AS G + VFG G
Sbjct: 23 ARLFFAGPGAPAPSA-----HGTAVASLLAGAGAQRPGLLPGADLYGADVFGRAGGGEGA 77
Query: 252 GSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKD 311
+ + A D GV V+++SL P +
Sbjct: 78 SA-----------------------LALARALDWLAEQGVRVVNISLAGPPNALLA---A 111
Query: 312 AIAIGSFHAMMHGILVVAAAGNEGPK 337
A+A A G+++VAAAGN+GP
Sbjct: 112 AVAA----AAARGMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.7 bits (107), Expect = 8e-05
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 486 PSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGT 545
S + FS+ G T DI APGV I++ + P + + GT
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLP---GDGADYVTLS---GT 361
Query: 546 SMSTPHISGIAGLLKTLHP-DWSPAAIKSAIMTTATTTDHTGKNPITDYDGLK-----AT 599
SM+ PH+SG+A L+ + +P + +PA +++ I+TTA T GL AT
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTP-LSGVDNLVGGGLANLDAAAT 420
Query: 600 PFEYGAGHVNPNSA 613
G N +
Sbjct: 421 DVAGGTLPANGTGS 434
|
Length = 508 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 501 INPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLK 560
N + + DI APGV+I++A R + GTSM+TPH++G+A L
Sbjct: 206 ANFSNGEVDIAAPGVDIVSA--------APGGGYRSMS-----GTSMATPHVAGVAALWA 252
Query: 561 TLHPD---WSPAAIKSAIMTTATTTDHTGKNPITDYD 594
P + AA+ A +T A TT + D
Sbjct: 253 EALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRG 289
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 205 NSSFYPTPEHSTARD--LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
N + T + +D HGTH AS +FG + S +A
Sbjct: 32 NLTPLFTYAAAACQDGGASAHGTHVASL----------IFG------QPCSSVEGIAPLC 75
Query: 263 SCWNV---NGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH--KNTEYFKDAIAIGS 317
N+ C D+ A + A+ G ++++S G + + +A+A+
Sbjct: 76 RGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAM-- 133
Query: 318 FHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDRE 359
+ +L+VAAAGNEG V P +L VGA MD +
Sbjct: 134 --CQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGA--MDDD 171
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 60/251 (23%)
Query: 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGM----RYY 193
GE V+I ++D+GV +S + + + Y L GM +Y
Sbjct: 1 GEGVVIAIVDTGV-----DYSHPDLDIYGNFSWKLKFDYKAY------LLPGMDKWGGFY 49
Query: 194 NQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGN-GYGTAKGG 252
Y D HGT AS A G +++G G +G
Sbjct: 50 ------------VIMY---------DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGI 88
Query: 253 SPRARLASYKSCW--NVNGQPLDCRDSDILSAFDDAIHDG---VDVLSVSLGEPSHKNTE 307
+P A++A+ K+ W +V L D + I+ G VDV+S S G + T
Sbjct: 89 APDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148
Query: 308 Y---------FKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTM 356
Y DA+ + G+ +V+AAGN GP T+ A ++VGA+T
Sbjct: 149 YAPGLDISSLVIDALVTYT------GVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT- 201
Query: 357 DREFTSYVTLG 367
+ ++ + G
Sbjct: 202 NFDYRPFYLFG 212
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D+DGHGT A A V N NG G A G +P A+L + SD
Sbjct: 38 DIDGHGTACAGVAAA--VGN-----NGLGVA-GVAPGAKLM----PVRIADSLGYAYWSD 85
Query: 279 ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH---GILVVAAAGNEG 335
I A A +G DV+S S G + AI + G +V+ AAGN G
Sbjct: 86 IAQAITWAADNGADVISNSWGGS----DSTESISSAIDNAATYGRNGKGGVVLFAAGNSG 141
Query: 336 PKPDTVVNLAPWLLTVGASTMDREFTSY 363
+ P ++ V A+ + SY
Sbjct: 142 RSVSSGYAANPSVIAVAATDSNDARASY 169
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 464 YNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSE 523
S+ + A+ V T + +S+ G D+ APGV I +
Sbjct: 140 SGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTG 191
Query: 524 AVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578
+ P + + GTS ++P +G+A L+ + +P+ +PA ++ + +T
Sbjct: 192 RGSAGDYPGGG----YGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (100), Expect = 6e-04
Identities = 62/329 (18%), Positives = 105/329 (31%), Gaps = 37/329 (11%)
Query: 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
D +GHGTH A T +F NG G A G +P A+L K + G
Sbjct: 177 PPFLDDNGHGTHVAGTIAA------VIFDNGAGVA-GVAPGAKLLLVKVLGSGGGSG--- 226
Query: 275 RDSDILSAFDDAI--HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
SD+ + A DV+++SLG S ++ A+ + G+++VAAAG
Sbjct: 227 ELSDVAEGIEGAANLGGPADVINLSLG-GSLSDSASPALGDALAAAAN-AGGVVIVAAAG 284
Query: 333 NEGPKPDTVVNLAPW------LLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMI 386
N+G P ++ VGA + S+ G +I + S+
Sbjct: 285 NDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGV-DIAAPGVNILSLS 343
Query: 387 GNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILV-NPKQLENESLPLP 445
D ++G M H +G A L+L NP +L +
Sbjct: 344 AVNTLPGDGADYVTLSGT---SMAAPH---------VSGVAALVLSANPNELTPAQVRNL 391
Query: 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASV---SDVKTEFNTKPSPQMTFFSSRGPSTIN 502
L +++ + + A+ + + + T
Sbjct: 392 IVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPA 451
Query: 503 PNIIKPDITAPGVEIIAAYSEAVAPSKSP 531
P A + A + +
Sbjct: 452 LGGTVPAAVAVAGTVTVGLGTAGTIALAA 480
|
Length = 508 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 486 PSPQMTFFSSRGPSTINPNIIKPDITAPG-------VEIIAAYSEAVAPSKSPSDDRRIP 538
+S GP +P IKPD+ A G A ++ + S
Sbjct: 194 GPAPAGATTSSGPG--SPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG--G 249
Query: 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
F GTS + P + +A L P+ SP I+
Sbjct: 250 FVTVGGTSFAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 48/173 (27%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 223 HGTHAAST--AVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPL------DC 274
HGTH A T AV N NG G A G + AR+ P+
Sbjct: 73 HGTHVAGTIAAVTN---------NGVGVA-GVAWGARI-----------LPVRVLGKCGG 111
Query: 275 RDSDILSAFDDAIH-------DGV-------DVLSVSLGEPSHKNTEYFKDAIAIGSFHA 320
SDI+ D + GV V+++SLG + AI A
Sbjct: 112 TLSDIV----DGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATM---QNAINDVRA 164
Query: 321 MMHGILVVAAAGNEGPKPDTVVNLAPW----LLTVGASTMDREFTSYVTLGDE 369
G+LVV AAGNEG + AP ++ VGA+ + + SY G
Sbjct: 165 R--GVLVVVAAGNEG---SSASVDAPANCRGVIAVGATDLRGQRASYSNYGPA 212
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 290 GVDVLSVSLG-----EPSHKNTEYFKDA----IAIGSFHAMMHGILVVAAAGNEGPKPDT 340
GVD++S SLG P++ T D I+ + A G+LVV +AGNEG
Sbjct: 104 GVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWK 163
Query: 341 VV---NLAPWLLTVGASTMDREFTSYVTLG 367
+ A +L+VGA + S+ ++G
Sbjct: 164 GIGAPADAENVLSVGAVDANGNKASFSSIG 193
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
D+ APG I + + + S GTSM+ P +SG+A L+ + +P+ +
Sbjct: 233 DVFAPGERIYSTTPDNEYETDS-------------GTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 569 AAIKSAIMTTAT 580
+K I+ +
Sbjct: 280 KEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 54/251 (21%), Positives = 79/251 (31%), Gaps = 57/251 (22%)
Query: 131 AWNKGRFGEDVIIGVIDSGV---WPESK-SFSDEGMGPVPLRWRGICQNDTHYGFQCNRK 186
AW G G +I+ V+D+GV P+ + + +G P Y F N
Sbjct: 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------VNGYNFVPNVG 51
Query: 187 LIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGY 246
I + GHGTH A T +A V+ G G
Sbjct: 52 DID-------------------------NDVSVGGGHGTHVAGT-----IAAVNNNGGGV 81
Query: 247 GTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG------- 299
G G A S G D + +A A +G +L S G
Sbjct: 82 GGIAGAGGVAPGVKIMSIQIFAG-RYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIY 140
Query: 300 EPSHKNT-EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDR 358
P K+ +YF + + G +VV +AGN P ++ V A +
Sbjct: 141 SPLLKDAFDYFIENAGGSP----LDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTND 196
Query: 359 EFTSYVTLGDE 369
S+ G
Sbjct: 197 NKASFSNYGRW 207
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 486 PSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGT 545
P Q T+ SSRGP+ + I+APG A+A + + N GT
Sbjct: 326 PGNQYTW-SSRGPTADGALGV--SISAPG--------GAIASVPNWTLQGSQLMN---GT 371
Query: 546 SMSTPHISG-IAGLLKTLHP---DWSPAAIKSAIMTTAT 580
SMS+P+ G IA LL L ++P +++ A+ TA
Sbjct: 372 SMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 510 ITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPA 569
+ APG I + P R GTS + PH+SG A LL P +
Sbjct: 208 LAAPGENIYSTD-----PDGGNGYGRVS------GTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 570 AIKSAIMTTAT 580
++ ++TTAT
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.85 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.23 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.12 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.87 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.87 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.69 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.66 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.64 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.63 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.62 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.59 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.55 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.55 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.52 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.52 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.47 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.45 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.31 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.26 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.25 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.17 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.87 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 97.77 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.91 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.59 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.36 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.15 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.87 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.85 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.68 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.42 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.36 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 93.06 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 90.95 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.33 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 90.32 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 87.66 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 86.25 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=449.20 Aligned_cols=306 Identities=53% Similarity=0.850 Sum_probs=258.8
Q ss_pred cccccCCCccccCCcccccccccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCC-CCcccccc
Q 044682 107 RKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT-HYGFQCNR 185 (755)
Q Consensus 107 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ 185 (755)
+++++++++++++++.... ..+|..+++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+. ++...|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 4788999999999985431 1256779999999999999999999999999989999999999999988 66678999
Q ss_pred cccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeee
Q 044682 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265 (755)
Q Consensus 186 kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~ 265 (755)
|+++.++|.+++.... + .....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~---~--~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYG---G--FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhcc---C--cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 9999999987754432 1 1123345678899999999999999998777666677777889999999999999998
Q ss_pred cCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCC
Q 044682 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA 345 (755)
Q Consensus 266 ~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~ 345 (755)
..+ .+..+++++||++|++++++|||||||... .....+.+..++..+.++|++||+||||+|+...+.++..
T Consensus 153 ~~~----~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~ 225 (307)
T cd04852 153 PDG----GCFGSDILAAIDQAIADGVDVISYSIGGGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVA 225 (307)
T ss_pred CCC----CccHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCC
Confidence 744 488999999999999999999999999874 2445667777888899999999999999998888888889
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
||+++||+++
T Consensus 226 ~~vi~Vga~~---------------------------------------------------------------------- 235 (307)
T cd04852 226 PWVTTVAAST---------------------------------------------------------------------- 235 (307)
T ss_pred CCeEEEEecc----------------------------------------------------------------------
Confidence 9999999741
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
+||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57799999999999987531 1112233458999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=445.38 Aligned_cols=291 Identities=19% Similarity=0.166 Sum_probs=211.0
Q ss_pred cccc--CCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccc---cceeeccchhhhhhhcc
Q 044682 130 SAWN--KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKL---IGMRYYNQGQIEHARAQ 204 (755)
Q Consensus 130 ~~~~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki---ig~~~~~~~~~~~~~~~ 204 (755)
.+|+ .+.+|+||+|||||||||++||+|.+.-... +....|..... .+++.. +.+++|.+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiD-----dD~nG~vdd~~G~nfVd--------- 369 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGID-----DDNNGNVDDEYGANFVN--------- 369 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCccccc-----cccCCcccccccccccC---------
Confidence 4555 4678999999999999999999998531000 00000000000 001111 11122221
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhh
Q 044682 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFD 284 (755)
Q Consensus 205 g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~ 284 (755)
....|.|..||||||||||||...++. .+.||||+|+|+.+|+++..+ .+..+++++||+
T Consensus 370 --------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G----~G~~sdI~~AI~ 429 (639)
T PTZ00262 370 --------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK----LGRLGDMFKCFD 429 (639)
T ss_pred --------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC----CccHHHHHHHHH
Confidence 233568899999999999999864332 248999999999999998776 478899999999
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc--------------ccc----CCC
Q 044682 285 DAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT--------------VVN----LAP 346 (755)
Q Consensus 285 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p 346 (755)
||++.|++|||||||... ....+..++.+|.++|++||+||||+|+.... +++ ..|
T Consensus 430 yA~~~GA~VINmSlG~~~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 430 YCISREAHMINGSFSFDE------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHCCCCEEEeccccCC------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 999999999999999763 23356667778999999999999999864211 111 247
Q ss_pred ceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCc
Q 044682 347 WLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGA 426 (755)
Q Consensus 347 ~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga 426 (755)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 8899988754310
Q ss_pred cEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCC
Q 044682 427 AGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNII 506 (755)
Q Consensus 427 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 506 (755)
..-..+.||++|..
T Consensus 517 -----------------------------------------------------------~~~s~s~~Snyg~~------- 530 (639)
T PTZ00262 517 -----------------------------------------------------------NQYSLSPNSFYSAK------- 530 (639)
T ss_pred -----------------------------------------------------------CcccccccccCCCC-------
Confidence 00123456666632
Q ss_pred CCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC
Q 044682 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG 586 (755)
Q Consensus 507 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~ 586 (755)
++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+++++||+++|++||.++....
T Consensus 531 ~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~ 597 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK 597 (639)
T ss_pred cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC
Confidence 34999999999999876 38999999999999999999999999999999999999999998764322
Q ss_pred CCcccCCCCCCCCCCcCC-CCccCccccCCCccccc
Q 044682 587 KNPITDYDGLKATPFEYG-AGHVNPNSAMDPGLVYD 621 (755)
Q Consensus 587 ~~~~~~~~~~~~~~~~~G-~G~vd~~~Al~~~lvyd 621 (755)
..+| .|+||+++|++.++-+.
T Consensus 598 --------------n~~~wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 598 --------------NKVKWGGYLDIHHAVNLAIASK 619 (639)
T ss_pred --------------CccccCcEEcHHHHHHHHHhcc
Confidence 2233 38999999999777553
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=407.55 Aligned_cols=244 Identities=28% Similarity=0.388 Sum_probs=199.1
Q ss_pred ccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCC
Q 044682 132 WNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPT 211 (755)
Q Consensus 132 ~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~ 211 (755)
|+++++|+||+|||||||||.+||+|.+. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 89999999999999999999999999741 01111111
Q ss_pred CCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCC
Q 044682 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGV 291 (755)
Q Consensus 212 ~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gv 291 (755)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ....++++++++||+++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~----~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ----VSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC----CchHHHHHHHHHhhhhcCC
Confidence 12345788999999999999741 248999999999999998765 3667889999999999999
Q ss_pred cEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 292 DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 292 dVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
||||||||... +.+.++..++..+.++|++||+||||+|+...+. +...+++|+|||++.+
T Consensus 101 ~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------ 163 (255)
T cd07479 101 DVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------ 163 (255)
T ss_pred CEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------
Confidence 99999999763 2234455566678899999999999999865443 3456899999987542
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCC----CCCCCCCceeeCCCeEEeeecCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTI----NPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.|||+|++.+ ..+++||||+|||.+|+++...
T Consensus 164 --------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-- 203 (255)
T cd07479 164 --------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-- 203 (255)
T ss_pred --------------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC--
Confidence 56789999996532 2678999999999999987654
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP----DWSPAAIKSAIMTTATTTD 583 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~sp~~ik~~L~~TA~~~~ 583 (755)
..|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 -----------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -----------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -----------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3788999999999999999999999998 7899999999999998764
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=410.26 Aligned_cols=271 Identities=23% Similarity=0.249 Sum_probs=202.8
Q ss_pred CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCC
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEH 214 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (755)
+++|+||+|+|||||||.+||++.+-. +.++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~----------------------~~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQA----------------------SGDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCcccccccccccc----------------------CCCCCcceeeccc-----------------c
Confidence 578999999999999999998654311 0111111111110 1
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~---------~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG---------GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC---------CCHHHHHHHHHHHHHcCCCEE
Confidence 234578899999999994 78999999998863 457899999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeEEEEEeCCccEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
|||||.... ..+.+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++.......+...+.
T Consensus 95 n~S~g~~~~--~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~---- 168 (275)
T cd05562 95 VDDIGYLNE--PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP---- 168 (275)
T ss_pred EecccccCC--CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc----
Confidence 999998641 112334566777788887 99999999999985433 3457899999999876532110000000
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCC-eEEeeecCCCCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV-EIIAAYSEAVAPSKSP 531 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~ 531 (755)
.......+.||++||+. ++++||||+|||. ++.+++..
T Consensus 169 -------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------- 207 (275)
T cd05562 169 -------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------- 207 (275)
T ss_pred -------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC--------
Confidence 00012345678899987 7899999999975 44544433
Q ss_pred CCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcc
Q 044682 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPN 611 (755)
Q Consensus 532 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 611 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++...+ ++..||||+||+.
T Consensus 208 -----~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~d~~~G~G~vda~ 270 (275)
T cd05562 208 -----DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG------------YDNASGSGLVDAD 270 (275)
T ss_pred -----CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC------------CCCCcCcCcccHH
Confidence 37899999999999999999999999999999999999999998875443 5678999999999
Q ss_pred ccCC
Q 044682 612 SAMD 615 (755)
Q Consensus 612 ~Al~ 615 (755)
+|++
T Consensus 271 ~Av~ 274 (275)
T cd05562 271 RAVA 274 (275)
T ss_pred HHhh
Confidence 9987
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=412.58 Aligned_cols=290 Identities=27% Similarity=0.280 Sum_probs=191.2
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||||||++||+|.+.... .|...+ .+...++ .+++.. + .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~--------d~~~~~~------~g~d~~----~------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKF--------DYKAYLL------PGMDKW----G------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccccc--------CcCCCcc------CCcCCC----C------CccCCC
Confidence 89999999999999999999753110 010000 0001111 111111 0 012356
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccC-CcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHH-------hhhhh--h
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNG-YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILS-------AFDDA--I 287 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~-------ai~~a--~ 287 (755)
.|.+||||||||||||+.....+.+++. ...+.||||+|+|+.+|++...+ .+....+.+ +++|+ .
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~----~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD----VIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC----cchhhhhhhccchhhhhhhhhhcc
Confidence 7899999999999999864333222221 23469999999999999997543 233333333 33433 3
Q ss_pred hCCCcEEEEcCCCCCCCCCCc--hhhHHHHHHHH-HHhcCcEEEEeccCCCCCCCccc--cCCCceEEeccccCCceeEE
Q 044682 288 HDGVDVLSVSLGEPSHKNTEY--FKDAIAIGSFH-AMMHGILVVAAAGNEGPKPDTVV--NLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 288 ~~gvdVIn~SlG~~~~~~~~~--~~~~~~~~~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~ 362 (755)
+++++|||||||........+ ..+..+..... +.++|+++|+||||+|+...++. ..++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 689999999999863110101 11222222222 24899999999999998655443 36789999999865321100
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
+...
T Consensus 209 ~~~~---------------------------------------------------------------------------- 212 (311)
T cd07497 209 YLFG---------------------------------------------------------------------------- 212 (311)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
......+.++.||||||+. ++++||||+|||++|+++.+
T Consensus 213 ---------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~ 251 (311)
T cd07497 213 ---------------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGR 251 (311)
T ss_pred ---------------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecc
Confidence 0001136789999999988 89999999999999999876
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP------DWSPAAIKSAIMTTA 579 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~sp~~ik~~L~~TA 579 (755)
...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 252 ~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 252 VLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 532100 011124789999999999999999999999886 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=420.22 Aligned_cols=314 Identities=30% Similarity=0.369 Sum_probs=236.7
Q ss_pred ccccCCC-CCCceEEEEEccCCCCCCcCccCCCCCCCCC-----cccceeecCCCCcccccccccceeeccchhhhhhhc
Q 044682 130 SAWNKGR-FGEDVIIGVIDSGVWPESKSFSDEGMGPVPL-----RWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARA 203 (755)
Q Consensus 130 ~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~ 203 (755)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++..+.|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3688887 9999999999999999999998754332211 11111111 2244567778888877754211
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeec--CCCCCCCCChhHHHH
Q 044682 204 QNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWN--VNGQPLDCRDSDILS 281 (755)
Q Consensus 204 ~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~~~~~~~~~~~~i~~ 281 (755)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .. .+....+++
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~----~~~~~~~~~ 135 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG----STYDDAYAK 135 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC----CCCHHHHHH
Confidence 11245789999999999999874322 1234699999999999999974 33 478889999
Q ss_pred hhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc----------------ccCC
Q 044682 282 AFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV----------------VNLA 345 (755)
Q Consensus 282 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~ 345 (755)
|++++++.|++|||||||.... .......+..++.++.++|++||+||||+|...... +...
T Consensus 136 ai~~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 213 (346)
T cd07475 136 AIEDAVKLGADVINMSLGSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATA 213 (346)
T ss_pred HHHHHHHcCCCEEEECCCcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccC
Confidence 9999999999999999998753 224455677777889999999999999998653221 1234
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
+++|+||+++...
T Consensus 214 ~~~i~Vga~~~~~------------------------------------------------------------------- 226 (346)
T cd07475 214 DDVLTVASANKKV------------------------------------------------------------------- 226 (346)
T ss_pred CCceEEeeccccc-------------------------------------------------------------------
Confidence 6777777764210
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
.....+.++.||+|||+. ..+
T Consensus 227 ---------------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~ 247 (346)
T cd07475 227 ---------------------------------------------------------PNPNGGQMSGFSSWGPTP--DLD 247 (346)
T ss_pred ---------------------------------------------------------CCCCCCccCCCcCCCCCc--ccC
Confidence 011136788999999987 889
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhh----CCCCCHHH----HHHHHHh
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL----HPDWSPAA----IKSAIMT 577 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~sp~~----ik~~L~~ 577 (755)
+||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++
T Consensus 248 ~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ 314 (346)
T cd07475 248 LKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMN 314 (346)
T ss_pred cCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 999999999999998765 37889999999999999999999997 78999877 7889999
Q ss_pred cccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCC
Q 044682 578 TATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 578 TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
||.+.... .....++.+.++|+|+||+.+||+
T Consensus 315 ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 315 TATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 99853211 123455678899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=408.79 Aligned_cols=294 Identities=28% Similarity=0.362 Sum_probs=228.6
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.+++..+.... ..
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~-------~~ 56 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDG-------TN 56 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccc-------cc
Confidence 899999999999999999999999999986310 011222333333111000 00
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|++...+ ......+++++++|+++
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 123 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG----STTEDTIIAAFLRAYED 123 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC----CCCHHHHHHHHHHHHhc
Confidence 1112345667899999999999998643 2348999999999999998665 47788899999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEe
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
+++|||+|||... .+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 124 ~~~iIn~S~g~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 124 GADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred CCCEEEeCCCcCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 9999999999873 334466777777888999999999999986532 2234568999999753
Q ss_pred CCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCC
Q 044682 367 GDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPY 446 (755)
Q Consensus 367 g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 446 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCC
Q 044682 447 HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526 (755)
Q Consensus 447 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 526 (755)
+.||++||+. +...||||+|||++|+++++...
T Consensus 189 --------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~- 221 (312)
T cd07489 189 --------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG- 221 (312)
T ss_pred --------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-
Confidence 4689999987 78899999999999999987742
Q ss_pred CCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCC
Q 044682 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGA 605 (755)
Q Consensus 527 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 605 (755)
+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++.... ... .....++..++||
T Consensus 222 ----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~-~~~--~~~~~~~~~~~G~ 288 (312)
T cd07489 222 ----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD-GTS--ALPDLAPVAQQGA 288 (312)
T ss_pred ----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccC-CCc--cccCCCCHhhcCc
Confidence 268999999999999999999999999 99999999999999998875433 000 0011467789999
Q ss_pred CccCccccCCCcc
Q 044682 606 GHVNPNSAMDPGL 618 (755)
Q Consensus 606 G~vd~~~Al~~~l 618 (755)
|+||+.+|++..-
T Consensus 289 G~vn~~~a~~~~~ 301 (312)
T cd07489 289 GLVNAYKALYATT 301 (312)
T ss_pred ceeeHHHHhcCCc
Confidence 9999999999543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=424.33 Aligned_cols=411 Identities=21% Similarity=0.194 Sum_probs=240.6
Q ss_pred CCCCceEEEEEccCCCCCCcCccC-CCCCCCCCcccceeecCCCCcccccccccceeeccch-hhhhhhccCCCCCCCCC
Q 044682 136 RFGEDVIIGVIDSGVWPESKSFSD-EGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQG-QIEHARAQNSSFYPTPE 213 (755)
Q Consensus 136 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~-~~~~~~~~g~~~~~~~~ 213 (755)
++|+||+|||||||||+.||+|++ +|.+|+...|++...... ......+...+.+. .+... . .....+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~-----~~~~~~~~~~~~~~~i~~~~---~--~~~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP-----PPGGYYGGGEYTEEIINAAL---A--SDNPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC-----CCccccCceEEeHHHHHHHH---h--cCCccc
Confidence 479999999999999999999996 678999999998876543 11112222222221 11110 0 011122
Q ss_pred CCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCC------CCCChhHHHHhhhhhh
Q 044682 214 HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQP------LDCRDSDILSAFDDAI 287 (755)
Q Consensus 214 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~------~~~~~~~i~~ai~~a~ 287 (755)
.....|..||||||||||||+..++ ..+.||||+|+|+++|++...+... ..+..+++++||+|++
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHH
Confidence 3456789999999999999996432 3358999999999999998775210 0167889999999998
Q ss_pred hC-----CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCccccC-----CCc--eEEeccc
Q 044682 288 HD-----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDTVVNL-----APW--LLTVGAS 354 (755)
Q Consensus 288 ~~-----gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----~p~--vitVgA~ 354 (755)
+. .+.|||||||.... .....++++.++..+..+ |++||+||||+|....+.... ... -+.|+.-
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~ 220 (455)
T cd07478 143 DKALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG 220 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC
Confidence 74 46799999998632 233445566666666665 999999999999754443321 011 1233322
Q ss_pred cCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCC-----CCCCCccceEEEEecCCc-------chhhHHHHH
Q 044682 355 TMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGA-----IDPKKINGKILLCMNHTH-------GIDKSQLAA 422 (755)
Q Consensus 355 ~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~-----~~~~~~~gkivl~~~~~~-------~~~~~~~~~ 422 (755)
. ..+.-.++...-..+.-. |+.++......-.+.. ........+|.+..+... ...+..+
T Consensus 221 ~--~~~~~eiW~~~~d~~~v~----i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~-- 292 (455)
T cd07478 221 E--KGFNLEIWGDFPDRFSVS----IISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN-- 292 (455)
T ss_pred C--cceEEEEecCCCCEEEEE----EECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccC--
Confidence 1 112212222111111111 1111100000000000 000000111111111110 0000000
Q ss_pred HcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEeccee----ecc-cCCCCccccccCCC
Q 044682 423 QAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKT----EFN-TKPSPQMTFFSSRG 497 (755)
Q Consensus 423 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~----~~~-~~~~~~~a~fSS~G 497 (755)
...+.+.|....... .......|+|.-.+...+ ..++......+.++..... +.. +...+.++.|||||
T Consensus 293 ~~~GiW~i~~~~~~~--~~g~~~~Wlp~~~~~~~~----t~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 293 IKPGIWKIRLTGVSI--TDGRFDAWLPSRGLLSEN----TRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred CCccceEEEEEeccC--CCceEEEEecCcCcCCCC----CEeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 111222222222110 000012344433222111 1233344444444432211 111 12245699999999
Q ss_pred CCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC------CCCCHHHH
Q 044682 498 PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH------PDWSPAAI 571 (755)
Q Consensus 498 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~~sp~~i 571 (755)
|+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.+++++|
T Consensus 367 ~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~i 431 (455)
T cd07478 367 PTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKI 431 (455)
T ss_pred cCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHH
Confidence 998 899999999999999999986 389999999999999999999999975 56799999
Q ss_pred HHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCC
Q 044682 572 KSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAG 606 (755)
Q Consensus 572 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 606 (755)
|++|++||+++... .+++.+||||
T Consensus 432 k~~L~~tA~~~~~~-----------~~pn~~~GyG 455 (455)
T cd07478 432 KTYLIRGARRRPGD-----------EYPNPEWGYG 455 (455)
T ss_pred HHHHHHhCccCCCC-----------CCCCCCCCCC
Confidence 99999999887532 3578899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=392.53 Aligned_cols=251 Identities=27% Similarity=0.315 Sum_probs=205.1
Q ss_pred cccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCC
Q 044682 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYP 210 (755)
Q Consensus 131 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~ 210 (755)
+|..+++|+||+|||||+|||++||+|.+..+.+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986321110 00000
Q ss_pred CCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCC
Q 044682 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG 290 (755)
Q Consensus 211 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~g 290 (755)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~---~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR---GCSQLDLARAINLALEQG 106 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC---CCCHHHHHHHHHHHHHCC
Confidence 012445778999999999998752 12589999999999999987652 245789999999999999
Q ss_pred CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCcc
Q 044682 291 VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 291 vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
++|||||||.... .......+..++..+.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 107 ~~VIN~S~G~~~~--~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 171 (267)
T cd07476 107 AHIINISGGRLTQ--TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------- 171 (267)
T ss_pred CCEEEecCCcCCC--CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-------------
Confidence 9999999997642 2234556777888899999999999999998766667788999999987642
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKS 530 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 530 (755)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 -------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------- 202 (267)
T cd07476 172 -------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG------- 202 (267)
T ss_pred -------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------
Confidence 3567899999764 388999999999999876
Q ss_pred CCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCCCC
Q 044682 531 PSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD----WSPAAIKSAIMTTATTTDHTG 586 (755)
Q Consensus 531 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~sp~~ik~~L~~TA~~~~~~~ 586 (755)
+.|..++|||||||||||++|||+|.+|. ++|++||++|++||+++...+
T Consensus 203 ------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 203 ------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred ------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 37899999999999999999999999887 899999999999999886543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=392.26 Aligned_cols=292 Identities=37% Similarity=0.530 Sum_probs=217.8
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||+|||++||+|.+.. ..+.+++..+.|......... .............
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMD--TRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCccc--ccccccccccCCC
Confidence 899999999999999999998531 122334444444432111000 0000000011234
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEc
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS 297 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 297 (755)
.|..+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+ .+...++++||+++++++++|||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~----~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGG----SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCC----CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 568999999999999986442 2358999999999999998555 4788999999999999999999999
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCccEEEEE
Q 044682 298 LGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI 375 (755)
Q Consensus 298 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~ 375 (755)
||... ....+.+..++..+.++|+++|+||||+|...... +...+++|+||+++....
T Consensus 127 ~g~~~----~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------- 186 (295)
T cd07474 127 LGSSV----NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------- 186 (295)
T ss_pred CCCCC----CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------
Confidence 99873 22455677777889999999999999998765544 346789999998752110
Q ss_pred eecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeH
Q 044682 376 MQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEF 455 (755)
Q Consensus 376 l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~ 455 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCC-CCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCC
Q 044682 456 DDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG-PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDD 534 (755)
Q Consensus 456 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 534 (755)
........|+++| +.. ...+||||+|||++|++++...
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~---------- 225 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS---------- 225 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----------
Confidence 0012334455554 544 7889999999999999998763
Q ss_pred CCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcccc
Q 044682 535 RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613 (755)
Q Consensus 535 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 613 (755)
...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 226 -~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 -GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC--------CCcCChhccCcceeccccC
Confidence 137899999999999999999999999999999999999999998876544 1122467899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=378.89 Aligned_cols=238 Identities=26% Similarity=0.357 Sum_probs=194.0
Q ss_pred eEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 141 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
|+|||||||||.+||+|++. ++...++. .....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC-------------------CCCCCCC
Confidence 78999999999999999743 11111111 0134568
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.+|||||||||+|+... . .|+||+|+|+.+|++...+.. ..++..++++||+||++.|++|||||||.
T Consensus 36 ~~HGT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~-~~~~~~~i~~ai~~a~~~g~~VIn~S~g~ 103 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGG-EGASALALARALDWLAEQGVRVVNISLAG 103 (239)
T ss_pred CCCHHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 89999999999998521 1 699999999999999865311 03677899999999999999999999997
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
.. ...+..++.++.++|++||+||||+|+.. ..++...+++|+|++++.+
T Consensus 104 ~~-------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~---------------------- 154 (239)
T cd05561 104 PP-------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR---------------------- 154 (239)
T ss_pred CC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC----------------------
Confidence 53 23456667788999999999999999754 3455567899999987543
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
+.++.||++|+.. ||+|||.+|+++.+. +.|
T Consensus 155 ----------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~ 185 (239)
T cd05561 155 ----------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGY 185 (239)
T ss_pred ----------------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCE
Confidence 4667899999977 999999999997765 379
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCC
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAG 606 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 606 (755)
..++|||||||||||++|||+|++| ++++|||++|++||+++...+ ++..||||
T Consensus 186 ~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~------------~d~~~G~G 239 (239)
T cd05561 186 RYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG------------RDPVFGYG 239 (239)
T ss_pred EEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC------------cCCCcCCC
Confidence 9999999999999999999999999 999999999999999887655 56789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=385.26 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=162.6
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
..+.+..+|||||||||+|...++. .+.||||+|+|+.+|++.... ....++++||+||+++|++||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g~-----~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNGD-----ERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCCC-----cCHHHHHHHHHHHHHCCCcEE
Confidence 3455789999999999999864432 248999999999999986432 667899999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc-----------ccCCCceEEeccccCCceeEEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV-----------VNLAPWLLTVGASTMDREFTSY 363 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~~p~vitVgA~~~~~~~~~~ 363 (755)
|||||... ......+..++..+.++|+++|+||||+|...... +...+++|+|||++....
T Consensus 146 N~S~G~~~----~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~---- 217 (291)
T cd07483 146 NMSFGKSF----SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYE---- 217 (291)
T ss_pred EeCCCCCC----CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCC----
Confidence 99999753 12234456667788999999999999998643211 113467888888654310
Q ss_pred EEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCC
Q 044682 364 VTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLP 443 (755)
Q Consensus 364 ~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 443 (755)
T Consensus 218 -------------------------------------------------------------------------------- 217 (291)
T cd07483 218 -------------------------------------------------------------------------------- 217 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecC
Q 044682 444 LPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSE 523 (755)
Q Consensus 444 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 523 (755)
...++.||++|+. +|||+|||.+|+++.+.
T Consensus 218 -------------------------------------------~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~ 247 (291)
T cd07483 218 -------------------------------------------NNLVANFSNYGKK-------NVDVFAPGERIYSTTPD 247 (291)
T ss_pred -------------------------------------------cccccccCCCCCC-------ceEEEeCCCCeEeccCc
Confidence 1246889999974 35999999999999765
Q ss_pred CCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 524 AVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 524 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 248 -------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 -------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 37999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=378.12 Aligned_cols=248 Identities=29% Similarity=0.361 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCC-CC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHST-AR 218 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 218 (755)
||+||||||||+++||+|... ...++.++++.++|.+. ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999521 11123456666666543 112 36
Q ss_pred CCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcC
Q 044682 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL 298 (755)
Q Consensus 219 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 298 (755)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... .....++++|++++.+.|++||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~--~~~~~~~~~ai~~a~~~~v~VIn~S~ 112 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET--PVEEDNWVAAAEWADSLGVDIISSSL 112 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc--cccHHHHHHHHHHHHHcCCCEEEeCC
Confidence 788999999999999852 235899999999999987643321 24566789999999999999999999
Q ss_pred CCCCCCCC---------CchhhHHHHHHHHHHhcCcEEEEeccCCCCCC---CccccCCCceEEeccccCCceeEEEEEe
Q 044682 299 GEPSHKNT---------EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP---DTVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 299 G~~~~~~~---------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
|....... ......+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.+
T Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 183 (261)
T cd07493 113 GYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------- 183 (261)
T ss_pred CcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------
Confidence 98742111 00123566777888999999999999999763 3445567999999987542
Q ss_pred CCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCC
Q 044682 367 GDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPY 446 (755)
Q Consensus 367 g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 446 (755)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCC
Q 044682 447 HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526 (755)
Q Consensus 447 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 526 (755)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 -----------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~--- 217 (261)
T cd07493 184 -----------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD--- 217 (261)
T ss_pred -----------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---
Confidence 4678899999987 889999999999999985443
Q ss_pred CCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 527 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ----------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ----------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 37899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=376.83 Aligned_cols=247 Identities=32% Similarity=0.402 Sum_probs=194.5
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||+||+++||+|.+. |++... ..+.....+.+ .......+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d--------------~~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFD--------------PVGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCccccccccc--------------CCCCCCCC
Confidence 89999999999999999999863 111000 00000000000 00112355
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh---------
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH--------- 288 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~--------- 288 (755)
.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG-----GNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC-----CcHHHHHHHHHHHHhccccccccc
Confidence 67899999999999987522 2238999999999999998764 778899999999875
Q ss_pred ---CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc---cccCCCceEEeccccCCceeEE
Q 044682 289 ---DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT---VVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 289 ---~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~ 362 (755)
.|++|||||||... . ....+..++..+.++|++||+||||+|..... .+...|++|+||+++.+
T Consensus 115 ~~~~~~~Iin~S~G~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----- 184 (264)
T cd07481 115 DPDLAPDVINNSWGGPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----- 184 (264)
T ss_pred ccccCCeEEEeCCCcCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----
Confidence 78999999999874 1 23445556667888999999999999865443 34567899999987643
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
+.++.||++||.. .+++||||+|||.+|+++.+
T Consensus 185 ---------------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~ 217 (264)
T cd07481 185 ---------------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVP 217 (264)
T ss_pred ---------------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecC
Confidence 4678999999987 68999999999999999987
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD--WSPAAIKSAIMTTAT 580 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~sp~~ik~~L~~TA~ 580 (755)
. +.|..++|||||||+|||++|||+|++|. +++.|||++|++||+
T Consensus 218 ~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 218 G-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred C-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 6 37899999999999999999999999999 999999999999984
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=385.16 Aligned_cols=223 Identities=27% Similarity=0.323 Sum_probs=167.0
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEc
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS 297 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 297 (755)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+. .+...++++||++|++.|++|||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs--~~t~~~l~~ai~~ai~~gadVIN~S 251 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGS--METGTALVRAMIAAIETKCDLINMS 251 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCC--ccchHHHHHHHHHHHHcCCCEEEec
Confidence 478899999999999985332 335899999999999998654311 1334679999999999999999999
Q ss_pred CCCCCCCCCCchhhHHHHHH-HHHHhcCcEEEEeccCCCCCCCcccc---CCCceEEeccccCCceeEEEEEeCCccEEE
Q 044682 298 LGEPSHKNTEYFKDAIAIGS-FHAMMHGILVVAAAGNEGPKPDTVVN---LAPWLLTVGASTMDREFTSYVTLGDEQIFK 373 (755)
Q Consensus 298 lG~~~~~~~~~~~~~~~~~~-~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~g~~~~~~ 373 (755)
||.... ... ...+...+ ..+.++|+++|+||||+|+..+++.. ..+++|+|||+...........+
T Consensus 252 lG~~~~--~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------- 321 (412)
T cd04857 252 YGEATH--WPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------- 321 (412)
T ss_pred CCcCCC--Ccc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-------
Confidence 998742 111 11222223 23457899999999999988776543 35899999997532210000000
Q ss_pred EEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEe
Q 044682 374 EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLV 453 (755)
Q Consensus 374 g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i 453 (755)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCC
Q 044682 454 EFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSD 533 (755)
Q Consensus 454 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 533 (755)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 -----------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~--------- 361 (412)
T cd04857 322 -----------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT--------- 361 (412)
T ss_pred -----------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC---------
Confidence 001136789999999998 8999999999999998752111
Q ss_pred CCCcCCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 044682 534 DRRIPFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTT 582 (755)
Q Consensus 534 ~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~ 582 (755)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 --~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 13789999999999999999999975 478999999999999999763
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=377.07 Aligned_cols=264 Identities=25% Similarity=0.299 Sum_probs=202.1
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+++|+||+|+|||||||++||+|.+.... .+...+...+... ..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~-------~~ 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFV-------PN 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccc-------cc
Confidence 4799999999999999999999999999864100 0000000000000 00
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
.........|..||||||||||+|...+....-|++ .+.|+||+|+|+.+|++.... .+...+++++|+++++.
T Consensus 50 ~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 50 VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY----YVGDDAVAAAIVYAADN 123 (273)
T ss_pred cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC----CccHHHHHHHHHHHHHc
Confidence 000123455788999999999999864433222222 346799999999999998765 47888999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc-------CcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEE
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH-------GILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (755)
|++|||||||... ...+...+..++..+.++ |++||+||||+|......+...+++|+||+++.+
T Consensus 124 g~~Vin~S~g~~~---~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----- 195 (273)
T cd07485 124 GAVILQNSWGGTG---GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----- 195 (273)
T ss_pred CCcEEEecCCCCC---ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-----
Confidence 9999999999874 123344556666677777 9999999999998776666778999999987643
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCC-eEEeee
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV-EIIAAY 521 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~ 521 (755)
+.++.||++|+.. ||+|||. .|++++
T Consensus 196 ---------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~ 222 (273)
T cd07485 196 ---------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTV 222 (273)
T ss_pred ---------------------------------------------CCcCccccCCCce--------EEEeCCCCcccccc
Confidence 4667899999987 9999999 899887
Q ss_pred cCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044682 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD-WSPAAIKSAIMTT 578 (755)
Q Consensus 522 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~sp~~ik~~L~~T 578 (755)
+.... .....|..++|||||||+|||++|||+|++|. ++|.|||++|++|
T Consensus 223 ~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 223 PKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 65321 11247899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=370.29 Aligned_cols=258 Identities=32% Similarity=0.488 Sum_probs=204.9
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|+|||+||+++||+|.+... ....+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------------cCCCCC
Confidence 8999999999999999999986411 001111000 012355
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC----CCcE
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD----GVDV 293 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~----gvdV 293 (755)
.|..+|||||||+|+|...+. .+.+.||||+|+|+.+|+++..+ .....++++|++++++. +++|
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~----~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG----SGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC----CccHHHHHHHHHHHHhhccccCceE
Confidence 677899999999999986432 23359999999999999998776 46788999999999998 9999
Q ss_pred EEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC--ccccCCCceEEeccccCCceeEEEEEeCCccE
Q 044682 294 LSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD--TVVNLAPWLLTVGASTMDREFTSYVTLGDEQI 371 (755)
Q Consensus 294 In~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~ 371 (755)
||||||.... .......+..++..+.++|++||+||||+|.... ..+...+++|+|||++.+...
T Consensus 110 in~S~g~~~~--~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~----------- 176 (264)
T cd07487 110 VNLSLGAPPD--PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH----------- 176 (264)
T ss_pred EEeccCCCCC--CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC-----------
Confidence 9999998752 2445677788888999999999999999997765 444567899999998654210
Q ss_pred EEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEE
Q 044682 372 FKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTS 451 (755)
Q Consensus 372 ~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 451 (755)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCC
Q 044682 452 LVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSP 531 (755)
Q Consensus 452 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 531 (755)
...++.||++||+. ++++||||+|||++|+++.+.... .
T Consensus 177 -----------------------------------~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~ 215 (264)
T cd07487 177 -----------------------------------DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----P 215 (264)
T ss_pred -----------------------------------CccccccccCCCCC--CCCcCCCEEccccceEeccccccc----c
Confidence 12478899999988 899999999999999998654211 1
Q ss_pred CCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 532 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 ~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1122357899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=370.56 Aligned_cols=331 Identities=24% Similarity=0.326 Sum_probs=255.5
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCccc------cc------------ccEEEEec---ceeeeE
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKK------AR------------DSISCSYG---RHINGF 80 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~------------~~i~~~y~---~~~~g~ 80 (755)
....|||.|++... ++-.+.|.++++...+.... +- ..|.+.|. .+|+|.
T Consensus 79 ~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y 149 (501)
T KOG1153|consen 79 LPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGY 149 (501)
T ss_pred cccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcc
Confidence 45789999995544 35566777777776543211 00 01333333 377888
Q ss_pred EEEeCHHHHHHHhCCCCeEEEEeCccccccc-----CCCccccCCccccccc-------ccccccCCCCCCceEEEEEcc
Q 044682 81 AAILEEEHAQQLAKHPEVLSIFLDEGRKVQT-----TRSWDFLGLEKDNVIS-------QNSAWNKGRFGEDVIIGVIDS 148 (755)
Q Consensus 81 s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~~~~~~~G~gV~VgVIDt 148 (755)
.-.++.+-+..+++.|-+..++++...+... .+...-||+-++.+.. ...++ .-..|+||...|+||
T Consensus 150 ~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y-~~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 150 TGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVY-EIDAGKGVTAYVLDT 228 (501)
T ss_pred ccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEe-ecccCCCeEEEEecc
Confidence 8889999999999999999999988775443 2222334444433211 11122 233899999999999
Q ss_pred CCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhh
Q 044682 149 GVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAA 228 (755)
Q Consensus 149 Gid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVA 228 (755)
||+.+||+|.++ +.| |.| .. ......|++|||||||
T Consensus 229 GVni~H~dFegR------a~w-Ga~------------------i~-------------------~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 229 GVNIEHPDFEGR------AIW-GAT------------------IP-------------------PKDGDEDCNGHGTHVA 264 (501)
T ss_pred cccccccccccc------eec-ccc------------------cC-------------------CCCcccccCCCcceee
Confidence 999999999875 122 111 10 0124568999999999
Q ss_pred HhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC---------CCcEEEEcCC
Q 044682 229 STAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD---------GVDVLSVSLG 299 (755)
Q Consensus 229 giiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~SlG 299 (755)
|+|++.. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|
T Consensus 265 G~I~sKt--------------~GvAK~s~lvaVKVl~~dG----sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 265 GLIGSKT--------------FGVAKNSNLVAVKVLRSDG----SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred eeeeccc--------------cccccccceEEEEEeccCC----cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 9999986 7999999999999999998 68999999999999986 5689999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcccc-CCCceEEeccccCCceeEEEEEeCCccEEEEEeec
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN-LAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQG 378 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~-~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~ 378 (755)
+.. .-.+..|+.+|.+.||.+++||||+..+++..++ .+..+|||||++..
T Consensus 327 g~~-------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------- 378 (501)
T KOG1153|consen 327 GFR-------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------- 378 (501)
T ss_pred Ccc-------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------
Confidence 874 3457778889999999999999999988876665 67899999998753
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhH
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDA 458 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 458 (755)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcC
Q 044682 459 QSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 538 (755)
+.+|.||+||+|+ ||.|||++|+|+|.+... .
T Consensus 379 -----------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------a 410 (501)
T KOG1153|consen 379 -----------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------A 410 (501)
T ss_pred -----------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------c
Confidence 6889999999999 999999999999998543 5
Q ss_pred CeeeccccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 044682 539 FNACFGTSMSTPHISGIAGLLKTLHPD---------WSPAAIKSAIMTTAT 580 (755)
Q Consensus 539 y~~~sGTSmAaP~VAG~aALl~q~~P~---------~sp~~ik~~L~~TA~ 580 (755)
-..+||||||+|||||++|.+++.+|. .||.++|..++.-..
T Consensus 411 t~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 411 TAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 678999999999999999999999883 388888888877654
|
|
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=362.62 Aligned_cols=233 Identities=31% Similarity=0.414 Sum_probs=194.7
Q ss_pred cccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCC
Q 044682 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYP 210 (755)
Q Consensus 131 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~ 210 (755)
+|..+++|+||+|||||+||+++||+|.+. +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 778889999999999999999999999753 1112222211
Q ss_pred CCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC-
Q 044682 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD- 289 (755)
Q Consensus 211 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~- 289 (755)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....++++++++++++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~----~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG----SGTLSGIIAGLEWVANDA 114 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC----CcCHHHHHHHHHHHHhcc
Confidence 125678899999999999874 6999999999999998775 47788999999999987
Q ss_pred ----CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-ccccCCCceEEeccccCCceeEEEE
Q 044682 290 ----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 290 ----gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
+++|||+|||... ...+..++..+.++|+++|+||||+|.... ..+...|++|+||+++.+
T Consensus 115 ~~~~~~~iin~S~g~~~-------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 115 TKRGKPAVANMSLGGGA-------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccCCCeEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 4899999999863 344556667888999999999999997653 445567999999997653
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++||.. ||+|||.+|.++....
T Consensus 181 -------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~ 209 (255)
T cd04077 181 -------------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS 209 (255)
T ss_pred -------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC
Confidence 3578899999987 9999999999988742
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATT 581 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~ 581 (755)
. ..|..++|||||||+|||++|||+|++|.++++|||++|++||++
T Consensus 210 ~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 D-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred C-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 1 378999999999999999999999999999999999999999964
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=371.68 Aligned_cols=269 Identities=25% Similarity=0.230 Sum_probs=188.2
Q ss_pred EEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCC
Q 044682 142 IIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLD 221 (755)
Q Consensus 142 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 221 (755)
+|||||||||.+||+|.+. +.....+.. ......|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~-----------------~~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSD-----------------EPGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hcccccccc-----------------CCCCcCCCC
Confidence 7999999999999999742 111111110 001156899
Q ss_pred CCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCC---CcEEEEcC
Q 044682 222 GHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG---VDVLSVSL 298 (755)
Q Consensus 222 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~g---vdVIn~Sl 298 (755)
||||||||||++.... .....|+||+++|+.+|++...+.........++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 123479999999999999988641111356788999999999853 49999999
Q ss_pred CCCCCCCCCchhhHHHHHHH-HHHhcCcEEEEeccCCCCCCCcc------------ccCCCceEEeccccCCceeEEEEE
Q 044682 299 GEPSHKNTEYFKDAIAIGSF-HAMMHGILVVAAAGNEGPKPDTV------------VNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 299 G~~~~~~~~~~~~~~~~~~~-~a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
|......... ...+..++. .+.++|++||+||||+|...... +..++++|+|||++.+.....+..
T Consensus 111 G~~~~~~~~~-~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 111 GSPLPIDDGR-PSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred CCCCCccCCC-CCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 9874211111 113333333 35689999999999999775432 235679999999876542110000
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
.
T Consensus 190 ~------------------------------------------------------------------------------- 190 (291)
T cd04847 190 Y------------------------------------------------------------------------------- 190 (291)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.......+.||+|||.. ++.+||||+|||++|.++.+...
T Consensus 191 -------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~ 231 (291)
T cd04847 191 -------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNA 231 (291)
T ss_pred -------------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCC
Confidence 000012234499999988 89999999999999988654311
Q ss_pred CC-----CCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 526 AP-----SKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 526 ~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
.. ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 232 ADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00 00001122358999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=360.31 Aligned_cols=240 Identities=30% Similarity=0.385 Sum_probs=201.5
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------- 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------- 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-------------
Confidence 889988 999999999999999999998432 22233333221
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 ----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 ----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG----SGSLADIANGIRYAADK 124 (260)
T ss_pred ----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHHC
Confidence 1235678899999999999875332 2348999999999999998765 47888999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
|++|||+|||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 125 ~~~iin~S~g~~~------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------ 186 (260)
T cd07484 125 GAKVINLSLGGGL------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------ 186 (260)
T ss_pred CCeEEEecCCCCC------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------
Confidence 9999999999873 2345666667888999999999999998877888888999999987643
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
+..+.||++|+.. |++|||.+|+++.+.
T Consensus 187 --------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------ 214 (260)
T cd07484 187 --------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------ 214 (260)
T ss_pred --------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC------
Confidence 4567899999876 999999999998765
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 582 (755)
+.|..++|||||||+|||++||++|++| +++.+||++|++||+++
T Consensus 215 -------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 -------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 3789999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=357.78 Aligned_cols=253 Identities=30% Similarity=0.375 Sum_probs=187.6
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||+|||++||+|.+. +...+.|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999753 22222222110 001234567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~-----~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG-----GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC-----CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 88999999999999863 23358999999999999998764 77899999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHh-cCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeec
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMM-HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQG 378 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~ 378 (755)
.... . .+.+..++..+.+ +|++||+||||+|......+...+++|+|||++.+.....+...
T Consensus 108 ~~~~---~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 108 GTYY---S--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred cCCC---C--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 8742 1 3444444444443 69999999999998766666678999999998754311000000
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhH
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDA 458 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 458 (755)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcC
Q 044682 459 QSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 538 (755)
.......++.+|.. .....|||++|||.+|+++..... ....
T Consensus 171 ----------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~---------~~~~ 212 (254)
T cd07490 171 ----------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGAN---------GDGQ 212 (254)
T ss_pred ----------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCCC---------CCCC
Confidence 00112223334433 256789999999999998653211 1247
Q ss_pred CeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 539 y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|..++|||||||+|||++|||+|++|++++.|||++|++||+
T Consensus 213 ~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=361.41 Aligned_cols=251 Identities=23% Similarity=0.296 Sum_probs=184.1
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|+++++|+||+||||||||+..|| |...++. +. ..+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~------------------~~~~~~------------- 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR------------------VVLAPG------------- 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce------------------eecCCC-------------
Confidence 89999999999999999999999998 7643211 00 000000
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
......|+.|||||||+++ .||||+|+|+.+|++. ....++++||+||+++
T Consensus 53 ---~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~--------~~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ---ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGG--------PDLVNSVGAFKKAISL 103 (298)
T ss_pred ---CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccC--------CCcHHHHHHHHHHHhc
Confidence 1124567889999999864 5899999999999985 3456789999999999
Q ss_pred CCcEEEEcCCCCCCCCC-------CchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEE
Q 044682 290 GVDVLSVSLGEPSHKNT-------EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~-------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (755)
+++|||||||....... ......+..++..|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 99999999998632111 112345777788899999999999999974 45778899999999854320
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 178 -------------------------------------------------------------------------------- 177 (298)
T cd07494 178 -------------------------------------------------------------------------------- 177 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccC--CCCCCCCCCCCCCcee---------
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSS--RGPSTINPNIIKPDIT--------- 511 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS--~Gp~~~~~~~~KPDI~--------- 511 (755)
......+++ +... ..+++.|||++
T Consensus 178 --------------------------------------------g~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~ 212 (298)
T cd07494 178 --------------------------------------------GARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHA 212 (298)
T ss_pred --------------------------------------------CcccccccccCcccc-cCCCCccCccccccCcCCcc
Confidence 000111111 1111 23677888874
Q ss_pred -------eCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 044682 512 -------APGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDH 584 (755)
Q Consensus 512 -------APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~ 584 (755)
|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|+.||+++..
T Consensus 213 ~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 213 AYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 799998765532100 01122479999999999999999999999999999999999999999987754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=362.48 Aligned_cols=279 Identities=29% Similarity=0.352 Sum_probs=199.5
Q ss_pred CCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCC
Q 044682 134 KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPE 213 (755)
Q Consensus 134 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~ 213 (755)
++++|+||+|||||+|||++||+|.+..... ....++++.....+.
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~---------------~~~~~~~~~~~~~~~------------------- 47 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK---------------TNLFHRKIVRYDSLS------------------- 47 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc---------------CccCcccEEEeeccC-------------------
Confidence 5789999999999999999999997632100 001123332222111
Q ss_pred CCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcE
Q 044682 214 HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDV 293 (755)
Q Consensus 214 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 293 (755)
....|..+|||||||||+|...+.... ..+.||||+|+|+.+|++...+. .....++..+++++.+.+++|
T Consensus 48 -~~~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~V 118 (293)
T cd04842 48 -DTKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN---LSSPPDLNKLFSPMYDAGARI 118 (293)
T ss_pred -CCCCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc---ccCCccHHHHHHHHHHhCCEE
Confidence 122278999999999999987543211 13589999999999999887642 256677899999999999999
Q ss_pred EEEcCCCCCCCCCCchhhHHHHHHHHH-Hh-cCcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 294 LSVSLGEPSHKNTEYFKDAIAIGSFHA-MM-HGILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 294 In~SlG~~~~~~~~~~~~~~~~~~~~a-~~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
||||||.... . .......++.++ .+ +|++||+||||+|.... ..+...+++|+|||++........
T Consensus 119 in~S~G~~~~---~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----- 189 (293)
T cd04842 119 SSNSWGSPVN---N-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----- 189 (293)
T ss_pred EeccCCCCCc---c-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----
Confidence 9999998742 1 112222223222 23 89999999999997765 455578999999998765311000
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
.|..
T Consensus 190 ---------------------~~~~------------------------------------------------------- 193 (293)
T cd04842 190 ---------------------GGLG------------------------------------------------------- 193 (293)
T ss_pred ---------------------cccc-------------------------------------------------------
Confidence 0000
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
.......++.||++||+. ++++||||+|||++|+++.+...
T Consensus 194 ----------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~--- 234 (293)
T cd04842 194 ----------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG--- 234 (293)
T ss_pred ----------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC---
Confidence 001135789999999987 89999999999999999975520
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-----P---DWSPAAIKSAIMTTAT 580 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~sp~~ik~~L~~TA~ 580 (755)
.........|...+|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 235 -~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 -GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred -CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0011123478899999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=352.23 Aligned_cols=241 Identities=27% Similarity=0.350 Sum_probs=192.0
Q ss_pred eEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 141 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
|+|||||+||+++||+|.+. .+++....+.. +.....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~-----------------~~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVS-----------------NNDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccC-----------------CCCCCCCC
Confidence 68999999999999999852 01111111111 11245678
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.+|||||||||+|+..+. ..+.||||+|+|+.+|++...+ .+...++.++++++++.+++|||||||.
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~----~~~~~~~~~ai~~a~~~~~~Vin~S~g~ 107 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG----YAYWSDIAQAITWAADNGADVISNSWGG 107 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC----CccHHHHHHHHHHHHHCCCeEEEeccCC
Confidence 999999999999986322 2348999999999999998765 4788899999999999999999999998
Q ss_pred CCCCCCCchhhHHHHHHHHHHh-cCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMM-HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
... .......+..++..+.+ +|+++|+||||+|......+...+++|+||+++.+
T Consensus 108 ~~~--~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 163 (242)
T cd07498 108 SDS--TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------- 163 (242)
T ss_pred CCC--CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------
Confidence 742 23445667777778888 99999999999998776667788999999997643
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
+.+++||++||.. |++|||.++.+....... ..+...+.|
T Consensus 164 ----------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~ 203 (242)
T cd07498 164 ----------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGY 203 (242)
T ss_pred ----------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCce
Confidence 4578999999987 999999999887544211 111223578
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 204 ~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 204 GSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=358.28 Aligned_cols=207 Identities=27% Similarity=0.357 Sum_probs=167.7
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh--------
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-------- 287 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-------- 287 (755)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~-----~~~~~i~~a~~~a~~~~~~~~~ 132 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG-----GTLSDIVDGMRWAAGLPVPGVP 132 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC-----CcHHHHHHHHHHHhccCcCCCc
Confidence 44568899999999999986432 2248999999999999998766 57889999999998
Q ss_pred --hCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEE
Q 044682 288 --HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 288 --~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
.++++|||||||.... . ...+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 133 ~~~~~~~Iin~S~G~~~~----~-~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------- 200 (285)
T cd07496 133 VNPNPAKVINLSLGGDGA----C-SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------- 200 (285)
T ss_pred ccCCCCeEEEeCCCCCCC----C-CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-------
Confidence 4678999999998741 1 44566677788899999999999999775 4455677899999987643
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++|+.. ||+|||++|.++....
T Consensus 201 -------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~ 229 (285)
T cd07496 201 -------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGD 229 (285)
T ss_pred -------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCC
Confidence 4678899999987 9999999999887653
Q ss_pred CCCC--CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 525 VAPS--KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 525 ~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
.... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 00111223578899999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=360.48 Aligned_cols=268 Identities=28% Similarity=0.320 Sum_probs=186.5
Q ss_pred cCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCC
Q 044682 133 NKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTP 212 (755)
Q Consensus 133 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~ 212 (755)
+.+++|+||+|||||+|||++||+|.+. .+....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~----------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVG----------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCC-----------------
Confidence 3578999999999999999999999753 111112221
Q ss_pred CCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCc
Q 044682 213 EHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVD 292 (755)
Q Consensus 213 ~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvd 292 (755)
.....|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+...++++||+||++.|++
T Consensus 39 -~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 39 -GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG----GGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred -CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC----CCcHHHHHHHHHHHHHcCCC
Confidence 112467899999999999998643 2347999999999999998765 46777899999999999999
Q ss_pred EEEEcCCCCCCC-------CCCchhhHHHHHHHHH---------------HhcCcEEEEeccCCCCCCCcccc-----CC
Q 044682 293 VLSVSLGEPSHK-------NTEYFKDAIAIGSFHA---------------MMHGILVVAAAGNEGPKPDTVVN-----LA 345 (755)
Q Consensus 293 VIn~SlG~~~~~-------~~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~ 345 (755)
|||+|||..... ........+......+ .++|++||+||||+|........ ..
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 999999985300 0111122222222223 68999999999999865433221 12
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
+++++|+++...
T Consensus 185 ~~~~~V~~V~~~-------------------------------------------------------------------- 196 (297)
T cd07480 185 PSAMGVAAVGAL-------------------------------------------------------------------- 196 (297)
T ss_pred ccccEEEEECCC--------------------------------------------------------------------
Confidence 344444443321
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
+....|+++.+ ...
T Consensus 197 --------------------------------------------------------------~~~~~~~~~~~----~~~ 210 (297)
T cd07480 197 --------------------------------------------------------------GRTGNFSAVAN----FSN 210 (297)
T ss_pred --------------------------------------------------------------CCCCCccccCC----CCC
Confidence 11122333322 223
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT 585 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~ 585 (755)
.||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|.+++.+++.+|+.........
T Consensus 211 ~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~ 277 (297)
T cd07480 211 GEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT 277 (297)
T ss_pred CceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC
Confidence 578999999999998876 3899999999999999999999999999999888888877432221000
Q ss_pred CCCcccCCCCCCCCCCcCCCCccCcc
Q 044682 586 GKNPITDYDGLKATPFEYGAGHVNPN 611 (755)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~G~G~vd~~ 611 (755)
.........++|+|++++.
T Consensus 278 -------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 278 -------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred -------CCCCCCChhhcCCceeecC
Confidence 0011235678999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=351.61 Aligned_cols=246 Identities=23% Similarity=0.241 Sum_probs=177.7
Q ss_pred ccccCC-CCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 130 SAWNKG-RFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 130 ~~~~~~-~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
.+|+.. ..|+||+|+|||+|||.+||+|.+.... . ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~---~~------------- 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L---IS------------- 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------c---cC-------------
Confidence 789874 4599999999999999999999753100 0 00
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|+.+|||||||||+|..+ + +| +.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 -----~~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~----------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 -----GLTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR----------VSNTADAILDAAD 99 (277)
T ss_pred -----CCCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC----------CCCHHHHHHHHHh
Confidence 01245788999999999999731 1 12 48999999999999975 1234455555555
Q ss_pred ----CCCcEEEEcCCCCCCCCCC---chhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccc-------------cCCCce
Q 044682 289 ----DGVDVLSVSLGEPSHKNTE---YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVV-------------NLAPWL 348 (755)
Q Consensus 289 ----~gvdVIn~SlG~~~~~~~~---~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~v 348 (755)
.++.+||||||........ .....+..++.++.++|+++|+||||++....... ...|++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 4677899999986321111 12344556777888999999999999986532111 123579
Q ss_pred EEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccE
Q 044682 349 LTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAG 428 (755)
Q Consensus 349 itVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g 428 (755)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 9999876431
Q ss_pred EEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCC
Q 044682 429 LILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKP 508 (755)
Q Consensus 429 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 508 (755)
...++.||++||..
T Consensus 190 ----------------------------------------------------------~~~~~~fSn~G~~v-------- 203 (277)
T cd04843 190 ----------------------------------------------------------GHTRLAFSNYGSRV-------- 203 (277)
T ss_pred ----------------------------------------------------------CCccccccCCCCcc--------
Confidence 02378999999987
Q ss_pred ceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 044682 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT----L-HPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 509 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~sp~~ik~~L~~TA~ 580 (755)
||+|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 204 di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 204 DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9999999999998763211 0111122457899999999999999999975 3 499999999999999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=340.26 Aligned_cols=227 Identities=32% Similarity=0.481 Sum_probs=187.7
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||+||+++||+|.+. ++....|... +.....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~----------------~~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD----------------DNNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC----------------CCCCCCC
Confidence 799999999999999999753 2222222221 0024567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..+|||||||+|++..... .+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||+|||
T Consensus 39 ~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~----~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 39 GNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDG----SGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 8899999999999986321 358999999999999998776 467789999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCccEEEEEee
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQ 377 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~ 377 (755)
.... ...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 106 ~~~~------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 106 GPSD------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred cCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 8642 23445556688899999999999999776554 6678999999998653
Q ss_pred cceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhh
Q 044682 378 GPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDD 457 (755)
Q Consensus 378 ~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 457 (755)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCc
Q 044682 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537 (755)
Q Consensus 458 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 537 (755)
+.++.||++|+.. |++|||.+|+++++. .
T Consensus 160 ------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~ 188 (229)
T cd07477 160 ------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------N 188 (229)
T ss_pred ------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------C
Confidence 4567899999976 999999999999876 3
Q ss_pred CCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
.|..++|||||||+|||++|||+|++|.++|.+||++|++|
T Consensus 189 ~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=344.73 Aligned_cols=250 Identities=28% Similarity=0.359 Sum_probs=191.1
Q ss_pred CceEEEEEccCCCCCCcCccCCCCCCCCCcccce---eecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCC
Q 044682 139 EDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGI---CQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHS 215 (755)
Q Consensus 139 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (755)
+||+|||||||||++||+|.+. .|... +..+. ..+. ..|.+..... +......
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~---~~~~------~~~~~~~~~~--------~~~~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGI---DDDG------NGYVDDIYGW--------NFVNNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCc---ccCC------CCcccCCCcc--------cccCCCC
Confidence 6899999999999999999864 23211 11110 0000 0111110000 0001234
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLS 295 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 295 (755)
++.|..+|||||||||+|...++. .+.|+||+|+|+.+|++...+ .++..+++++++++++.+++|||
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~a~~~a~~~~~~vin 125 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG----SGTTSDAIKAIDYAVDMGAKIIN 125 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC----CcCHHHHHHHHHHHHHCCCeEEE
Confidence 567889999999999999864332 248999999999999998776 47889999999999999999999
Q ss_pred EcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC---Ccccc--CCCceEEeccccCCceeEEEEEeCCcc
Q 044682 296 VSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP---DTVVN--LAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 296 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
+|||.... ...+..++..+.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 126 ~S~G~~~~------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~------------- 186 (259)
T cd07473 126 NSWGGGGP------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN------------- 186 (259)
T ss_pred eCCCCCCC------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-------------
Confidence 99998742 45566677788899999999999998762 22332 35789999987643
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKS 530 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 530 (755)
+.++.||++||. +||+.|||.++++..+.
T Consensus 187 -------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------- 215 (259)
T cd07473 187 -------------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG------- 215 (259)
T ss_pred -------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------
Confidence 456679999985 35999999999997654
Q ss_pred CCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 531 PSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 531 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 216 ------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 37899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=356.79 Aligned_cols=277 Identities=34% Similarity=0.481 Sum_probs=209.1
Q ss_pred EEEEEccCCCCCCcCcc-CCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 142 IIGVIDSGVWPESKSFS-DEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 142 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
+|||||||||++||+|. .. + ...++.+.+.|.++. .......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~--------------~~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN--------------PNPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB--------------STTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC--------------CCcCccccC
Confidence 69999999999999997 32 0 011222333443321 013356678
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh-hCCCcEEEEcCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-HDGVDVLSVSLG 299 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~SlG 299 (755)
.+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ ....++++++++++ +.+++|||+|||
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~-----~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG-----GTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS-----EEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc-----cccccccchhhhhhhccCCcccccccc
Confidence 899999999999986 2 11 12348999999999999976654 67788999999999 899999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc---cccCCCceEEeccccCCceeEEEEEeCCccEEEEEe
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT---VVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIM 376 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l 376 (755)
.............+..+...+.++|+++|+||||+|..... .+...+++|+||+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------- 174 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------- 174 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------
T ss_pred ccccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc-------------------
Confidence 82100023345556667778999999999999999876653 33446889999987642
Q ss_pred ecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHh
Q 044682 377 QGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFD 456 (755)
Q Consensus 377 ~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 456 (755)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCC
Q 044682 457 DAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRR 536 (755)
Q Consensus 457 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 536 (755)
+.++.||++|+.. .++++||||+|||.+|+++++....
T Consensus 175 -------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~---------- 212 (282)
T PF00082_consen 175 -------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR---------- 212 (282)
T ss_dssp -------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES----------
T ss_pred -------------------------------ccccccccccccc-ccccccccccccccccccccccccc----------
Confidence 3568899997653 2789999999999999998876321
Q ss_pred cCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCC
Q 044682 537 IPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 537 ~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
..|...+|||||||+|||++|||+|++|++++.+||.+|++||+++.... .......||||+||+.+|++
T Consensus 213 ~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 213 GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 25788999999999999999999999999999999999999999876211 12356688999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=341.32 Aligned_cols=223 Identities=19% Similarity=0.201 Sum_probs=170.5
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
+++|+|||||||||++||+|.+. +++.+.|....... .......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----------~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----------NKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----------ccCCCCC
Confidence 78999999999999999999752 22233333211000 0001123
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCC--CCCCChhHHHHhhhhhhhCCCcEEE
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ--PLDCRDSDILSAFDDAIHDGVDVLS 295 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~--~~~~~~~~i~~ai~~a~~~gvdVIn 295 (755)
.|..||||||||||+ |+||+|+|+.+|+++..+.. ...++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578999999999996 56999999999999865421 0135678899999999999999999
Q ss_pred EcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-cc--ccCCCceEEeccccCCceeEEEEEeCCccEE
Q 044682 296 VSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 296 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
||||.............+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------- 172 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------- 172 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------
Confidence 99998742111123566778888999999999999999997754 33 3356899999998754
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPS 532 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 532 (755)
+.++.||++|+.. |++|||++|+++.+..
T Consensus 173 -----------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~-------- 201 (247)
T cd07491 173 -----------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP-------- 201 (247)
T ss_pred -----------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC--------
Confidence 4567899999987 9999999999987521
Q ss_pred CCCCcCCeeeccccchhhhHHHHHHHHHhh
Q 044682 533 DDRRIPFNACFGTSMSTPHISGIAGLLKTL 562 (755)
Q Consensus 533 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 562 (755)
..+.|..++|||||||||||++|||++.
T Consensus 202 --~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 --LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred --CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1147999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=346.90 Aligned_cols=211 Identities=28% Similarity=0.324 Sum_probs=159.0
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~~~~vi 110 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG----SAESSWIIKAIIDAADDGVDVI 110 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC----CcCHHHHHHHHHHHHHCCCCEE
Confidence 3456789999999999998742 25999999999999998776 3578899999999999999999
Q ss_pred EEcCCCCCCCCC-----CchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC----------------------ccccCCCc
Q 044682 295 SVSLGEPSHKNT-----EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD----------------------TVVNLAPW 347 (755)
Q Consensus 295 n~SlG~~~~~~~-----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~----------------------~~~~~~p~ 347 (755)
|+|||....... ......+..++..+.++|++||+||||+|.... ..+...++
T Consensus 111 n~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 190 (294)
T cd07482 111 NLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPN 190 (294)
T ss_pred EeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCc
Confidence 999998632111 112244566667788999999999999996541 12224567
Q ss_pred eEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCcc
Q 044682 348 LLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAA 427 (755)
Q Consensus 348 vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~ 427 (755)
+|+|||++.+
T Consensus 191 vi~Vga~~~~---------------------------------------------------------------------- 200 (294)
T cd07482 191 VITVSATDNN---------------------------------------------------------------------- 200 (294)
T ss_pred eEEEEeeCCC----------------------------------------------------------------------
Confidence 7777776542
Q ss_pred EEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCC
Q 044682 428 GLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIK 507 (755)
Q Consensus 428 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 507 (755)
+.++.||++|+..
T Consensus 201 ------------------------------------------------------------~~~~~~S~~g~~~------- 213 (294)
T cd07482 201 ------------------------------------------------------------GNLSSFSNYGNSR------- 213 (294)
T ss_pred ------------------------------------------------------------CCcCccccCCCCc-------
Confidence 4667899998754
Q ss_pred CceeeCCCeEEeeecCCCCC---CC------CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCH-HHHHHHHHh
Q 044682 508 PDITAPGVEIIAAYSEAVAP---SK------SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP-AAIKSAIMT 577 (755)
Q Consensus 508 PDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp-~~ik~~L~~ 577 (755)
+|++|||+++.......... .. .......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++
T Consensus 214 ~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~ 293 (294)
T cd07482 214 IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYN 293 (294)
T ss_pred ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhh
Confidence 49999999985322111000 00 001123457899999999999999999999999999999 999999998
Q ss_pred c
Q 044682 578 T 578 (755)
Q Consensus 578 T 578 (755)
|
T Consensus 294 T 294 (294)
T cd07482 294 T 294 (294)
T ss_pred C
Confidence 6
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=331.33 Aligned_cols=222 Identities=24% Similarity=0.269 Sum_probs=174.4
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||||||++||+|.+.- ...+.+..+. ...+.....|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~~------------~~~~~~~~~d 42 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDLE------------IIVVSAEGGD 42 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------cccccccccc------------cccCCCCCCC
Confidence 7999999999999999998531 1111111000 0001235567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..||||||||||++. +|+++|+.+|+++..+ .+...++++||+|++++|++|||||||
T Consensus 43 ~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 43 KDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG----RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC----CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 899999999999864 6999999999998776 578899999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
... ......+..++.++.++|+++|+||||++..... +...+++|+|++.+.+.
T Consensus 101 ~~~----~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 101 GPG----DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCC----CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC---------------------
Confidence 874 2223455666778888999999999999865433 55678999999865321
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
.. +.+++. +|++|||.+|+++.+. +.|
T Consensus 155 -----------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~-------------~~~ 181 (222)
T cd07492 155 -----------------------------PK---SFWYIY--------VEFSADGVDIIAPAPH-------------GRY 181 (222)
T ss_pred -----------------------------Cc---ccccCC--------ceEEeCCCCeEeecCC-------------CCE
Confidence 11 112333 4999999999998876 378
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 182 ~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 182 LTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=350.28 Aligned_cols=250 Identities=21% Similarity=0.218 Sum_probs=180.7
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|+.+++|+||+|+|||||||+.||+|.+.-.. ...+.|....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC-----------
Confidence 38999999999999999999999999999753110 0111222110
Q ss_pred CCCCCCCCC--CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh
Q 044682 209 YPTPEHSTA--RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA 286 (755)
Q Consensus 209 ~~~~~~~~~--~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a 286 (755)
....+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... ........++.++
T Consensus 74 ----~~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~------~~~~~~~~~~~~~ 135 (297)
T cd04059 74 ----PDPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD------VTDVVEAESLGLN 135 (297)
T ss_pred ----CCCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc------cccHHHHHHHhcc
Confidence 01122 2788999999999999863221 23899999999999998653 2334555666665
Q ss_pred hhCCCcEEEEcCCCCCCCC-CCchhhHHHHHHHHHHh-----cCcEEEEeccCCCCCCCc----cccCCCceEEeccccC
Q 044682 287 IHDGVDVLSVSLGEPSHKN-TEYFKDAIAIGSFHAMM-----HGILVVAAAGNEGPKPDT----VVNLAPWLLTVGASTM 356 (755)
Q Consensus 287 ~~~gvdVIn~SlG~~~~~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~ 356 (755)
.+ .++|||||||...... ..........++.++.. +|++||+||||+|..... .....|++|+|||++.
T Consensus 136 ~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 136 PD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred cC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 54 4599999999763210 01112222333333332 699999999999973222 1235689999998765
Q ss_pred CceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCC
Q 044682 357 DREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 357 ~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
+
T Consensus 215 ~------------------------------------------------------------------------------- 215 (297)
T cd04059 215 N------------------------------------------------------------------------------- 215 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCe
Q 044682 437 LENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 437 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
+.++.||++|+.. +++|||..
T Consensus 216 ---------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~ 236 (297)
T cd04059 216 ---------------------------------------------------GVRASYSEVGSSV--------LASAPSGG 236 (297)
T ss_pred ---------------------------------------------------CCCcCCCCCCCcE--------EEEecCCC
Confidence 4678899999988 99999987
Q ss_pred -------EEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 517 -------IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 517 -------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 237 ~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 237 SGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665441 0136788999999999999999999999999999999999999984
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=340.81 Aligned_cols=364 Identities=23% Similarity=0.330 Sum_probs=273.9
Q ss_pred CceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCccccccc------EEEEecceeeeEEEEeCH-----HHHHH
Q 044682 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDS------ISCSYGRHINGFAAILEE-----EHAQQ 91 (755)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------i~~~y~~~~~g~s~~l~~-----~~~~~ 91 (755)
...|||.|+..... ..|..++++.+...+-..-+ ....|-..|.-+-++-.. -++++
T Consensus 49 e~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 35799999987654 45667777766533322222 234555566666554432 35799
Q ss_pred HhCCCCeEEEEeCcccccccC------------CCcccc-CC-------------ccc-------cc----ccccccccC
Q 044682 92 LAKHPEVLSIFLDEGRKVQTT------------RSWDFL-GL-------------EKD-------NV----ISQNSAWNK 134 (755)
Q Consensus 92 L~~~p~V~~V~~~~~~~~~~~------------~s~~~~-g~-------------~~~-------~~----~~~~~~~~~ 134 (755)
|..+|.|+.|.|.+.+..... +.-.++ |. ... .| ...+-+|+.
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 999999999999887632110 000000 00 000 01 223689999
Q ss_pred CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCC
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEH 214 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (755)
|++|++|+|||.|||+.-+||.|+.- ....+.++ .
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------E 231 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------E 231 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------c
Confidence 99999999999999999999999741 00001110 1
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
..-.|.-||||.|||+|||.. ...|.||+++|+++|||.+.. -.+++.++.|+.||+....||+
T Consensus 232 ~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q----VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 232 DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ----VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce----eehhhHHHHHHHHHHhhhcceE
Confidence 245578999999999999884 247889999999999998876 5789999999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCC--ceEEeccccCCceeEEEEEeCCccEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAP--WLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
|+|+|++. +.+.++-.-+......+|++|.|+||+||-.++..+++. .||.||..+-
T Consensus 296 NLSIGGPD-----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf---------------- 354 (1033)
T KOG4266|consen 296 NLSIGGPD-----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF---------------- 354 (1033)
T ss_pred eeccCCcc-----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc----------------
Confidence 99999974 556666666667889999999999999999999988764 6788886543
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCC----CCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTI----NPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
.+.++.|||||-+.+ ..||+||||++-|.+|......
T Consensus 355 ----------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~----- 395 (1033)
T KOG4266|consen 355 ----------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS----- 395 (1033)
T ss_pred ----------------------------------cchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-----
Confidence 268999999997654 3689999999999999876554
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCC
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 604 (755)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++... -++||
T Consensus 396 --------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N-------------MfEQG 454 (1033)
T KOG4266|consen 396 --------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN-------------MFEQG 454 (1033)
T ss_pred --------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc-------------hhhcc
Confidence 3788999999999999999999976 3345689999999999999987664 68999
Q ss_pred CCccCccccCCCcccc
Q 044682 605 AGHVNPNSAMDPGLVY 620 (755)
Q Consensus 605 ~G~vd~~~Al~~~lvy 620 (755)
+|++|+.++.+-=+-|
T Consensus 455 aGkldLL~syqiL~SY 470 (1033)
T KOG4266|consen 455 AGKLDLLESYQILKSY 470 (1033)
T ss_pred CcchhHHHHHHHHHhc
Confidence 9999998887733333
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=332.67 Aligned_cols=247 Identities=27% Similarity=0.340 Sum_probs=188.5
Q ss_pred CCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCC
Q 044682 137 FGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHST 216 (755)
Q Consensus 137 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (755)
+|+||+|+|||+||+++||+|.+.... ...+.... ......
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~-------------~~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVN-------------DAGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccc-------------cccCCC
Confidence 599999999999999999999864110 00000000 000124
Q ss_pred CCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEE
Q 044682 217 ARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSV 296 (755)
Q Consensus 217 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~ 296 (755)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||+
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Vin~ 109 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS---TFSDADIAAAYDFLAASGVRIINN 109 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc---ccchHHHHHHHHHHHhCCCeEEEc
Confidence 457889999999999998633 33589999999999999987541 266788999999999999999999
Q ss_pred cCCCCCCCCCC---------chhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccc---------cCCCceEEeccccCCc
Q 044682 297 SLGEPSHKNTE---------YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVV---------NLAPWLLTVGASTMDR 358 (755)
Q Consensus 297 SlG~~~~~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgA~~~~~ 358 (755)
|||........ .....+......+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 110 S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 110 SWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred cCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 99987421110 14455666777889999999999999986543332 2457899999987642
Q ss_pred eeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCC
Q 044682 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 359 ~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCcccc--ccCCCCCCCCCCCCCCceeeCCCe
Q 044682 439 NESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTF--FSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 439 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
.... ||++|+.. ..++++|||.+
T Consensus 190 --------------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~ 214 (267)
T cd04848 190 --------------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGEN 214 (267)
T ss_pred --------------------------------------------------Ccccccccccchhh-----hhheeecCcCc
Confidence 2233 48888643 23479999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 517 IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 517 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|+++.+... ..|..++|||||||+|||++||++|++|.++++|||++|++||+
T Consensus 215 i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 215 IYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999887311 37889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=285.43 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=142.2
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh--hhCCCcE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA--IHDGVDV 293 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a--~~~gvdV 293 (755)
...|.+||||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++|
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~--------~~~~~~~~~i~~~~~~~~gv~V 88 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI--------KSNNGQWQECLEAQQNGNNVKI 88 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC--------CCCCccHHHHHHHHHhcCCceE
Confidence 3457999999999999997 3567999998765522 2233456777787 6689999
Q ss_pred EEEcCCCCCCCCC---CchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCc-----cccCCCceEEeccccCCceeEEEE
Q 044682 294 LSVSLGEPSHKNT---EYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDT-----VVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 294 In~SlG~~~~~~~---~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
||||||....... ....+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++.....
T Consensus 89 INmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---- 164 (247)
T cd07488 89 INHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---- 164 (247)
T ss_pred EEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----
Confidence 9999998742110 01223455566666565 99999999999975322 23356899999998754210
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCC--CCCCCCCCCCCceeeCCCeEEeeec
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG--PSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G--p~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
...+.||++| |+. ++..||||+|||++|++ +
T Consensus 165 -------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s--~ 197 (247)
T cd07488 165 -------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL--P 197 (247)
T ss_pred -------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeEEC--C
Confidence 1234566644 443 78899999999999998 2
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP------AAIKSAIMTT 578 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp------~~ik~~L~~T 578 (755)
. +.|..++|||||||||||++|||++++|++.+ .++|.+|++|
T Consensus 198 ~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 198 D-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred C-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 2 26889999999999999999999999887764 4567766665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=303.42 Aligned_cols=241 Identities=26% Similarity=0.321 Sum_probs=186.7
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.-|||||||||+|+..+. ....||||+|+|+++++.+..-+. .-+...+.+|+..++++.+||||||+|.
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgs--METgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGS--METGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccc--cccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 459999999999998543 235899999999999997654322 2455678999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccC---CCceEEeccccCCceeEEEEEeCCccEEEEEee
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNL---APWLLTVGASTMDREFTSYVTLGDEQIFKEIMQ 377 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~ 377 (755)
..+ .+.....++..-..+.++|+++|+||||.||...+++.+ ...+|.|||.-......+.
T Consensus 380 ~a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~-------------- 443 (1304)
T KOG1114|consen 380 DAH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE-------------- 443 (1304)
T ss_pred cCC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh--------------
Confidence 864 444555566666667789999999999999998887763 3589999985332110000
Q ss_pred cceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhh
Q 044682 378 GPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDD 457 (755)
Q Consensus 378 ~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 457 (755)
T Consensus 444 -------------------------------------------------------------------------------- 443 (1304)
T KOG1114|consen 444 -------------------------------------------------------------------------------- 443 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCc
Q 044682 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537 (755)
Q Consensus 458 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 537 (755)
.. ...+..+.+..||||||+. ||.+--.|+|||+.|-+- |... -.
T Consensus 444 ----y~------------------~~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq 488 (1304)
T KOG1114|consen 444 ----YS------------------VREPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQ 488 (1304)
T ss_pred ----hh------------------hhccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hh
Confidence 00 0001135678899999998 999999999999998653 2211 02
Q ss_pred CCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcccc
Q 044682 538 PFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 613 (755)
.-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++... +|.||.|++++.+|
T Consensus 489 ~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~id-------------~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 489 NSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDID-------------SFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCccc-------------hhccCcceeehhHH
Confidence 567899999999999999999865 5678999999999999999987654 79999999999999
Q ss_pred CC
Q 044682 614 MD 615 (755)
Q Consensus 614 l~ 615 (755)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 77
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-31 Score=271.18 Aligned_cols=197 Identities=34% Similarity=0.472 Sum_probs=158.4
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh-hCCCcEE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-HDGVDVL 294 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVI 294 (755)
...+..+||||||++|++...+. ...|+||+++|+.+|+..... ......+++++++++ ..+++||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~----~~~~~~~~~ai~~~~~~~~~~ii 105 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG----SGSSSDIAAAIDYAAADQGADVI 105 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC----CcCHHHHHHHHHHHHhccCCCEE
Confidence 45578899999999999986332 127999999999999988765 367889999999999 8999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEeCCcc
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
|+|||.... . ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 106 n~S~g~~~~---~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------ 169 (241)
T cd00306 106 NLSLGGPGS---P-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------ 169 (241)
T ss_pred EeCCCCCCC---C-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------
Confidence 999998742 1 334455556677777 9999999999997765 4666789999999987542
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccc-cccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMT-FFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
... .++++|+ |||+.|||.++.+....
T Consensus 170 --------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~------ 197 (241)
T cd00306 170 --------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT------ 197 (241)
T ss_pred --------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC------
Confidence 111 4455554 55999999999875111
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 -----~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -----GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12488999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=241.82 Aligned_cols=249 Identities=30% Similarity=0.422 Sum_probs=188.4
Q ss_pred ccccC--CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCC
Q 044682 130 SAWNK--GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSS 207 (755)
Q Consensus 130 ~~~~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~ 207 (755)
..|.. +.+|+||+|+|||+||+..||+|.+... ....|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~----------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG----------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC-----------
Confidence 67777 8999999999999999999999986410 00122221
Q ss_pred CCCCCCCC-CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecC-CCCCCCCChhHHHHhhhh
Q 044682 208 FYPTPEHS-TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNV-NGQPLDCRDSDILSAFDD 285 (755)
Q Consensus 208 ~~~~~~~~-~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-~~~~~~~~~~~i~~ai~~ 285 (755)
... ...|..+|||||+|++++.... ......|+||+++++.++++... + .....++++++++
T Consensus 174 -----~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g----~~~~~~~~~~i~~ 237 (508)
T COG1404 174 -----DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG----SGELSDVAEGIEG 237 (508)
T ss_pred -----CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC----cccHHHHHHHHHH
Confidence 011 2568999999999999984211 11224899999999999999876 4 5778888999999
Q ss_pred hhhCC--CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcC-cEEEEeccCCCCCCCc----cccCC--CceEEeccccC
Q 044682 286 AIHDG--VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHG-ILVVAAAGNEGPKPDT----VVNLA--PWLLTVGASTM 356 (755)
Q Consensus 286 a~~~g--vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgA~~~ 356 (755)
++..+ +++||||+|.. . .......+..++..++..| +++|+++||.|..... .+... +.+++|++.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~-~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 238 AANLGGPADVINLSLGGS-L--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHhcCCCCcEEEecCCCC-c--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 99999 99999999975 1 2223444555666777777 9999999999876521 11222 46777777643
Q ss_pred CceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCC
Q 044682 357 DREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 357 ~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCe
Q 044682 437 LENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 437 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
.+.++.||++|+.. ..+++|||.+
T Consensus 315 --------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~ 338 (508)
T COG1404 315 --------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVN 338 (508)
T ss_pred --------------------------------------------------CCccccccccCCCC------CcceeCCCcc
Confidence 15678899999741 2299999999
Q ss_pred EEe-----eecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 044682 517 IIA-----AYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP-DWSPAAIKSAIMTTATT 581 (755)
Q Consensus 517 I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~sp~~ik~~L~~TA~~ 581 (755)
|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 339 i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 339 ILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 988 444421 1499999999999999999999999999 89999999999888863
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=197.01 Aligned_cols=305 Identities=17% Similarity=0.228 Sum_probs=187.0
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|..+++|++|+++|.|.||||.||+++.. ..--..++|....
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssnd----------- 195 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSND----------- 195 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccCC-----------
Confidence 37999999999999999999999999999742 1111222333210
Q ss_pred CCCCCCCCCC--C--CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhh
Q 044682 209 YPTPEHSTAR--D--LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFD 284 (755)
Q Consensus 209 ~~~~~~~~~~--d--~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~ 284 (755)
++..|+ | .+.|||.|||-+++...++ ++| .|||.+.++..+|+++. .+..|+++|-.
T Consensus 196 ----pfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq-------pymtdlieans 256 (629)
T KOG3526|consen 196 ----PFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ-------PYMTDLIEANS 256 (629)
T ss_pred ----CCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC-------chhhhhhhhcc
Confidence 111222 2 5789999999888776543 344 69999999999999874 56667777643
Q ss_pred hhhh-CCCcEEEEcCCCCCCCCCCchhh---HHHHHHHHHHh-----cCcEEEEeccCCCCCCC-ccc--cCCCceEEec
Q 044682 285 DAIH-DGVDVLSVSLGEPSHKNTEYFKD---AIAIGSFHAMM-----HGILVVAAAGNEGPKPD-TVV--NLAPWLLTVG 352 (755)
Q Consensus 285 ~a~~-~gvdVIn~SlG~~~~~~~~~~~~---~~~~~~~~a~~-----~Gi~vV~AAGN~G~~~~-~~~--~~~p~vitVg 352 (755)
.--+ ..++|.+-|||.... ....+. +..+++.+-++ .|-+.|.|.|..|.+.. ... ..+-|.|++.
T Consensus 257 mghep~kihiysaswgptdd--gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisin 334 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDD--GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISIN 334 (629)
T ss_pred cCCCCceEEEEecccCcCCC--CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEee
Confidence 3222 367899999998632 222222 22333333333 35689999999885432 111 1344666665
Q ss_pred cccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEe
Q 044682 353 ASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILV 432 (755)
Q Consensus 353 A~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~ 432 (755)
+.-.+.+-. .| +..|+
T Consensus 335 saindg~na-------------------hy-----descs---------------------------------------- 350 (629)
T KOG3526|consen 335 SAINDGENA-------------------HY-----DESCS---------------------------------------- 350 (629)
T ss_pred hhhcCCccc-------------------cc-----cchhh----------------------------------------
Confidence 432221100 00 01111
Q ss_pred cCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceee
Q 044682 433 NPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITA 512 (755)
Q Consensus 433 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 512 (755)
.-..+.||+-|-.+ +-
T Consensus 351 ------------------------------------------------------stlastfsng~rnp--------et-- 366 (629)
T KOG3526|consen 351 ------------------------------------------------------STLASTFSNGGRNP--------ET-- 366 (629)
T ss_pred ------------------------------------------------------HHHHHHhhcCCcCC--------Cc--
Confidence 01234677766443 11
Q ss_pred CCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC-C--Cc
Q 044682 513 PGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG-K--NP 589 (755)
Q Consensus 513 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~-~--~~ 589 (755)
|+.-.-- .+.....-||||.|||-.||+-||-++++|.++..+++.+-.-|.++..-.. + -.
T Consensus 367 -gvattdl--------------yg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~ 431 (629)
T KOG3526|consen 367 -GVATTDL--------------YGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFE 431 (629)
T ss_pred -ceeeecc--------------ccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEE
Confidence 2111111 1125567799999999999999999999999999999988777776532111 0 11
Q ss_pred ccCCCCCCCCCCcCCCCccCccccCCCcccccCCccchhhhhhcCC
Q 044682 590 ITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRG 635 (755)
Q Consensus 590 ~~~~~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~ 635 (755)
++........+.-||+|.+|+.+-+..+.-+...+.- |-|.-|
T Consensus 432 w~mngvglefnhlfgfgvldagamv~lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 432 WQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred EeccccceeeecccccccccHHHHHHHHHHhccCCCc---eeeccc
Confidence 2223334556778999999998777655545444433 346555
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=180.47 Aligned_cols=104 Identities=26% Similarity=0.296 Sum_probs=80.8
Q ss_pred cceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC---CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc
Q 044682 247 GTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD---GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH 323 (755)
Q Consensus 247 g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~ 323 (755)
..+.||||+|+|+.|+++++ ....++.++.+++.+ +++|||+|||.........+...+..++..|..+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~--------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~ 152 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGT--------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQ 152 (361)
T ss_pred HHHHhccCCCeEEEEEECCc--------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhC
Confidence 44689999999999999753 234577788888877 9999999999874211223446677788889999
Q ss_pred CcEEEEeccCCCCCCCc-----------cccCCCceEEeccccCCc
Q 044682 324 GILVVAAAGNEGPKPDT-----------VVNLAPWLLTVGASTMDR 358 (755)
Q Consensus 324 Gi~vV~AAGN~G~~~~~-----------~~~~~p~vitVgA~~~~~ 358 (755)
||+||+|+||+|..... .+...|+|++||+++...
T Consensus 153 GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 153 GITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999999999976542 345789999999997654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-11 Score=112.96 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=82.8
Q ss_pred CCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCCCC-CCcccEEEeeHhhHHHHHHHHhcC
Q 044682 391 CNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESLPL-PYHLPTSLVEFDDAQSIIAYNNSI 468 (755)
Q Consensus 391 c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~~~ 468 (755)
|....+...+++|||+||+|+.| +.+|..+++++||.|+|++++.......... ...+|++.|+..+|+.|++|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 55555666789999999999999 8999999999999999999987532222111 35689999999999999999988
Q ss_pred CCcEEEEecceeecccCCCCccccccCCCCCC
Q 044682 469 KNPVASVSDVKTEFNTKPSPQMTFFSSRGPST 500 (755)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 500 (755)
+++|.+..+.. ..+++.++.||||||..
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 45555555444 45678899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=103.41 Aligned_cols=111 Identities=33% Similarity=0.565 Sum_probs=89.4
Q ss_pred EEeCCccEEEEE-ee--c----ceeecCC----CCCCCCCCCCCCCCCccceEEEEecCCc--chhhHHHHHHcCccEEE
Q 044682 364 VTLGDEQIFKEI-MQ--G----PLTQHSM----IGNLECNPGAIDPKKINGKILLCMNHTH--GIDKSQLAAQAGAAGLI 430 (755)
Q Consensus 364 ~~~g~~~~~~g~-l~--~----plv~~~~----~~~~~c~~~~~~~~~~~gkivl~~~~~~--~~~~~~~~~~~Ga~g~i 430 (755)
+++|||+++.|+ |+ . |+++... .....|.+...+..+++||||+|+|+.| +.+|..+++++||.|+|
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI 81 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMI 81 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEE
Confidence 578999999999 66 2 5655222 2356899888888999999999999887 57899999999999999
Q ss_pred EecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEE
Q 044682 431 LVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
++++.............+|++.|+..+|+.|++|++++..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 82 LANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99986543333333567999999999999999999998776654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-09 Score=89.31 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=57.2
Q ss_pred eEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCc----ccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEE
Q 044682 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSV----KKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLS 100 (755)
Q Consensus 25 ~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~ 100 (755)
+|||.|+++... ......|.+++.+++.+. .....++.+.|+..|+||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998653 234566666666543321 34567899999999999999999999999999999999
Q ss_pred EEeCcccccc
Q 044682 101 IFLDEGRKVQ 110 (755)
Q Consensus 101 V~~~~~~~~~ 110 (755)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=93.44 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=77.6
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCC---CCCC--CCCcccEEE
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLEN---ESLP--LPYHLPTSL 452 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~--~~~~~p~~~ 452 (755)
||++.......+|.+..+...+++|||+||+|+.| +.+|..+++++||.++|++|+..... .... ....+|.++
T Consensus 20 ~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~ 99 (122)
T cd04816 20 PLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGV 99 (122)
T ss_pred EEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEE
Confidence 66665555568899988888899999999999999 99999999999999999999765211 1111 345699999
Q ss_pred eeHhhHHHHHHHHhcCCCcEEE
Q 044682 453 VEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
|+..+|+.|++++..+.+.+++
T Consensus 100 Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 100 ITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred EcHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999999888765543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-08 Score=89.69 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCCCCCC--CCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC----CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAI--DPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL----PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~--~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+... ++.++.|+|+|++||.| |.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 568998887 67889999999999999 99999999999999999999876222111 123468999999999999
Q ss_pred HHHHHhcCCCcEEEE
Q 044682 461 IIAYNNSIKNPVASV 475 (755)
Q Consensus 461 l~~~~~~~~~~~~~i 475 (755)
|++++.++.+.+++|
T Consensus 124 l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 124 ILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHcCCcEEEeC
Confidence 999999988776653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-08 Score=87.93 Aligned_cols=87 Identities=29% Similarity=0.535 Sum_probs=67.1
Q ss_pred ceeecCC-CCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC----CCCCCCCCCCcccEEE
Q 044682 379 PLTQHSM-IGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ----LENESLPLPYHLPTSL 452 (755)
Q Consensus 379 plv~~~~-~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~----~~~~~~~~~~~~p~~~ 452 (755)
|||.... .....|.+......+++||||||+|+.| +.+|..+++++||.|+|+++... ...........+|+++
T Consensus 9 ~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~ 88 (101)
T PF02225_consen 9 PLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVF 88 (101)
T ss_dssp EEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEE
T ss_pred EEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEE
Confidence 6663222 2345677778888999999999999999 99999999999999999999221 1223334467899999
Q ss_pred eeHhhHHHHHHHH
Q 044682 453 VEFDDAQSIIAYN 465 (755)
Q Consensus 453 i~~~~g~~l~~~~ 465 (755)
|+..+|+.|++|+
T Consensus 89 I~~~~g~~L~~~i 101 (101)
T PF02225_consen 89 ISYEDGEALLAYI 101 (101)
T ss_dssp E-HHHHHHHHHHH
T ss_pred eCHHHHhhhhccC
Confidence 9999999999986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=85.05 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC-CCCCC-------CCCCcccEEEeeHhhH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL-ENESL-------PLPYHLPTSLVEFDDA 458 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~-~~~~~-------~~~~~~p~~~i~~~~g 458 (755)
...|.+.. ...+++|||+|++||.| |.+|..+++++||.++|++|+... ..... .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46799744 35689999999999999 999999999999999999997643 11111 1235799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 044682 459 QSIIAYNNSIKNPVASV 475 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i 475 (755)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988877665
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=86.14 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC----CCCCcccEEEeeHhhHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL----PLPYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~ 462 (755)
...|.+.... .+++|||+||+|+.| +.+|..+++++||.|+|++++........ .....+|++.|+..+|+.|+
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 4679888874 469999999999999 89999999999999999998865421111 12356999999999999999
Q ss_pred HHHhcCCCcEEE
Q 044682 463 AYNNSIKNPVAS 474 (755)
Q Consensus 463 ~~~~~~~~~~~~ 474 (755)
+|++.+...+++
T Consensus 106 ~~l~~g~~v~v~ 117 (118)
T cd04818 106 AALAAGGTVTVT 117 (118)
T ss_pred HHHhcCCcEEEe
Confidence 999988766543
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=84.10 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC--CC--CCCCcccEEEeeHhhHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE--SL--PLPYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l~ 462 (755)
...|.+..+.+.+++|||+|++||.| |.+|..+++++||.++|++|+...... .. .....||+++|+..+|+.|+
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 46799988888899999999999999 999999999999999999998652111 11 13456899999999999999
Q ss_pred HHHhc
Q 044682 463 AYNNS 467 (755)
Q Consensus 463 ~~~~~ 467 (755)
+.+..
T Consensus 110 ~~l~~ 114 (120)
T cd02129 110 QTFGD 114 (120)
T ss_pred HHhcc
Confidence 88764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=102.54 Aligned_cols=291 Identities=19% Similarity=0.163 Sum_probs=174.7
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
..|..+++|+++.|+|.|.|+...||+.... ....+..++.......
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~~~p--------- 70 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHDNDP--------- 70 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCCCCc---------
Confidence 7899999999999999999999999998742 1122333333221110
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh-
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH- 288 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~- 288 (755)
....+......|||-|++-.+....+..- ..|+++++++..++++... ..+...+......
T Consensus 71 --~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~--------v~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 71 --EPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC--------VSDAVEAPSLGFGP 132 (431)
T ss_pred --ccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee--------cccceecccccCCC
Confidence 01112224688999999999988622211 2789999999999998632 2244444443333
Q ss_pred CCCcEEEEcCCCCCCCCCCch-hhHHHHHHHH-----HHhcCcEEEEeccCCCCCCCcccc--CCC--ceEEeccccCCc
Q 044682 289 DGVDVLSVSLGEPSHKNTEYF-KDAIAIGSFH-----AMMHGILVVAAAGNEGPKPDTVVN--LAP--WLLTVGASTMDR 358 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~-~~~~~~~~~~-----a~~~Gi~vV~AAGN~G~~~~~~~~--~~p--~vitVgA~~~~~ 358 (755)
.-+++-+.|||.......-.. ......+... ...+|-+.|++.||.|.......- ..+ +.++.+..+...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~ 212 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCG 212 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccC
Confidence 357899999998732111111 1111222222 345678999999998855433211 112 222222222111
Q ss_pred eeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCC
Q 044682 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 359 ~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
.++ . ..+
T Consensus 213 ~~p----------------------------------~----y~~----------------------------------- 219 (431)
T KOG3525|consen 213 KKP----------------------------------Q----YRE----------------------------------- 219 (431)
T ss_pred CCc----------------------------------c----ccc-----------------------------------
Confidence 000 0 000
Q ss_pred CCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEE
Q 044682 439 NESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEII 518 (755)
Q Consensus 439 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 518 (755)
.-.....+.+|+.+| . +. -|.
T Consensus 220 ---------------------------------------------~C~~~~~s~~s~~~~-~--------~~-----~~~ 240 (431)
T KOG3525|consen 220 ---------------------------------------------RCASCLASTYSSGGP-T--------EE-----CIV 240 (431)
T ss_pred ---------------------------------------------cccccccccccCCCC-c--------ce-----eee
Confidence 000134456788888 3 11 122
Q ss_pred eeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCC
Q 044682 519 AAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598 (755)
Q Consensus 519 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 598 (755)
.+... ...-.--.|||.++|+.||+.+|.++++|.++..++..+...++....... ..++.......
T Consensus 241 ~~~~~------------~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~-~~~~~n~~g~~ 307 (431)
T KOG3525|consen 241 CTDPR------------HSCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLK-GKWKSNGAGGL 307 (431)
T ss_pred ecCCC------------ccccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccC-CCceEecCCce
Confidence 22221 013344569999999999999999999999999999999999998765554 34443333334
Q ss_pred CCCcCCCCccCccccCCC
Q 044682 599 TPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 599 ~~~~~G~G~vd~~~Al~~ 616 (755)
....+|+|++|+.+-+..
T Consensus 308 ~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 308 VSHLYGFGLLDAKALVSC 325 (431)
T ss_pred eeeeecccccCcchhhhh
Confidence 456799999998776663
|
|
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=84.26 Aligned_cols=95 Identities=15% Similarity=-0.011 Sum_probs=72.3
Q ss_pred ceeecCCCCCCCCCCCCCCC-C-----CccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC-C---------
Q 044682 379 PLTQHSMIGNLECNPGAIDP-K-----KINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE-S--------- 441 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~-~-----~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~--------- 441 (755)
.|+++.+ ....|.+..... + ...++|+|++||.| |.+|..+++++||.++|++|+.+.... .
T Consensus 14 ~l~~~~~-~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~ 92 (127)
T cd02125 14 VVVYPKE-NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSA 92 (127)
T ss_pred EEEecCC-ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCccccccc
Confidence 4455443 456898876542 2 37899999999999 999999999999999999998543110 0
Q ss_pred -CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEE
Q 044682 442 -LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 442 -~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
......+|+++|+..+|+.|++.+.++..++++
T Consensus 93 ~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 93 DYIEKITIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred ccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 012336899999999999999999988776654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=85.08 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCCCCCC--CCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCC--C----CCCCcccEEEeeHhhHH
Q 044682 389 LECNPGA--IDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENES--L----PLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 389 ~~c~~~~--~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~g~ 459 (755)
..|.+.. +...+++|||+||+|+.| +.+|..+++++||.|+|++++....... . .....+|++.|+..+|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 4588877 677889999999999999 8999999999999999999986532111 1 13457999999999999
Q ss_pred HHHHHHhcCCCcEE
Q 044682 460 SIIAYNNSIKNPVA 473 (755)
Q Consensus 460 ~l~~~~~~~~~~~~ 473 (755)
.|++|+.++.+.++
T Consensus 111 ~l~~~~~~~~~v~~ 124 (126)
T cd00538 111 ALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHhcCCceEE
Confidence 99999998665544
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=83.75 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCC----CCC---C-----CCCCcccEEEee
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLE----NES---L-----PLPYHLPTSLVE 454 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~----~~~---~-----~~~~~~p~~~i~ 454 (755)
...|.+... +.+++|||+|++|+.| |.+|..+++++||.++|++|+.... ... . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 5578999999999999 9999999999999999999875431 011 1 124578999999
Q ss_pred HhhHHHHHHHHhcCCCcEE
Q 044682 455 FDDAQSIIAYNNSIKNPVA 473 (755)
Q Consensus 455 ~~~g~~l~~~~~~~~~~~~ 473 (755)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-07 Score=83.30 Aligned_cols=92 Identities=28% Similarity=0.319 Sum_probs=72.0
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCC-C-C--CCCCCcccEEEe
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLEN-E-S--LPLPYHLPTSLV 453 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~-~-~--~~~~~~~p~~~i 453 (755)
++++.. ...|.+..+ +.+++|||+|++|+.| +.+|..+++++||.++|++|+...+. . . ..+...+|.+.|
T Consensus 25 ~lv~~~---~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I 100 (122)
T cd02130 25 PLVVVP---NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI 100 (122)
T ss_pred EEEEeC---CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe
Confidence 555532 457887655 3579999999999999 99999999999999999999863221 1 1 112457999999
Q ss_pred eHhhHHHHHHHHhcCCCcEEE
Q 044682 454 EFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 454 ~~~~g~~l~~~~~~~~~~~~~ 474 (755)
+..+|+.|++.++++.+.+++
T Consensus 101 s~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 101 SQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred cHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999998876654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=81.35 Aligned_cols=86 Identities=19% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC-CCCCCCcccEEEeeHhhHHHHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE-SLPLPYHLPTSLVEFDDAQSIIAYN 465 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~ 465 (755)
...|.+...+..+++|||+|++|+.| +.+|..+++++||.++|+||+...... ...+...+|.+.+ ..+|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 56899887777789999999999999 999999999999999999988653211 1222334566656 99999999999
Q ss_pred hcCCCcEEE
Q 044682 466 NSIKNPVAS 474 (755)
Q Consensus 466 ~~~~~~~~~ 474 (755)
..+...+++
T Consensus 120 ~~G~~vtv~ 128 (129)
T cd02124 120 AAGSNVTVD 128 (129)
T ss_pred hcCCeEEEe
Confidence 887765543
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.5e-07 Score=83.55 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC------CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL------PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+.. .+++|||+|++|+.| |.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798765 378999999999999 99999999999999999998764321111 113579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 044682 461 IIAYNNSIKNPVA 473 (755)
Q Consensus 461 l~~~~~~~~~~~~ 473 (755)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998876554
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=77.16 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC--CC----CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE--SL----PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+. +.++++|||+|++||.| |.+|..+++++||.++|++|+...... .. .....+|+++|+..+++.
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~ 104 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHL 104 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHH
Confidence 4679776 56889999999999999 999999999999999999987653211 11 223479999999999999
Q ss_pred HHHHHhc
Q 044682 461 IIAYNNS 467 (755)
Q Consensus 461 l~~~~~~ 467 (755)
|..++..
T Consensus 105 L~~l~~~ 111 (117)
T cd04813 105 LSSLLPK 111 (117)
T ss_pred HHHhccc
Confidence 9887654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=99.56 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCC-cEEEEcCCCCCCCC--CCchhhHHHHHHHHHH
Q 044682 245 GYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGV-DVLSVSLGEPSHKN--TEYFKDAIAIGSFHAM 321 (755)
Q Consensus 245 ~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~~~~--~~~~~~~~~~~~~~a~ 321 (755)
+-....-+||+|+|..|-+- . .....+..|+.+....=+ -+|-.||+....-. ..-.-+.+....+.|.
T Consensus 284 DVE~s~A~AP~A~I~lvvap--~------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 284 DVEWSHAMAPKANIDLVVAP--N------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred ehhhhhccCccCceEEEEcC--C------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 33445678999999998772 1 223333333333322211 23335666431000 1113445555666788
Q ss_pred hcCcEEEEeccCCCCCCCc--------cccCCCceEEecc
Q 044682 322 MHGILVVAAAGNEGPKPDT--------VVNLAPWLLTVGA 353 (755)
Q Consensus 322 ~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 353 (755)
.+||.+++|+|.+|....+ .+..+|++.+||.
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999865543 2236799999997
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.6e-06 Score=79.88 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCCCCCCCCCC---CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCC-CCCCC-----CCCcccEEEeeHhh
Q 044682 388 NLECNPGAIDP---KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLE-NESLP-----LPYHLPTSLVEFDD 457 (755)
Q Consensus 388 ~~~c~~~~~~~---~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~~~-----~~~~~p~~~i~~~~ 457 (755)
..+|.+....+ ..+.|+|+|++||.| |.+|..+++++||.++|++|+.... ..... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798877644 789999999999999 9999999999999999999986532 11111 24579999999999
Q ss_pred HHHHHHHHhcCCC
Q 044682 458 AQSIIAYNNSIKN 470 (755)
Q Consensus 458 g~~l~~~~~~~~~ 470 (755)
|+.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.9e-06 Score=76.32 Aligned_cols=74 Identities=24% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCCCCccceEEEEecCCc------chhhHHHHHHcCccEEEEecCC--CCC-CCCCCC---CCcccEEEeeHhhHHHHH
Q 044682 395 AIDPKKINGKILLCMNHTH------GIDKSQLAAQAGAAGLILVNPK--QLE-NESLPL---PYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~------~~~~~~~~~~~Ga~g~i~~~~~--~~~-~~~~~~---~~~~p~~~i~~~~g~~l~ 462 (755)
.+.+.+++|||+|++|+.| |.+|..+++++||.++|+||+. ... .....+ ...+|++.|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 3445689999999999988 7899999999999999999997 321 111122 458999999999999999
Q ss_pred HHHhcC
Q 044682 463 AYNNSI 468 (755)
Q Consensus 463 ~~~~~~ 468 (755)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=68.44 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=60.3
Q ss_pred CCCCCCccceEEEEecCCc---chhhHHHHHHcCccEEEEecCCCCCCCC-----C--CCCCcccEEEeeHhhHHHHHHH
Q 044682 395 AIDPKKINGKILLCMNHTH---GIDKSQLAAQAGAAGLILVNPKQLENES-----L--PLPYHLPTSLVEFDDAQSIIAY 464 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~---~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 464 (755)
.+...+++|||++++++.+ +.+|..+++++||.|+|++|+....... . .....+|++.|+.++|+.|...
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 3345679999999999887 6789999999999999999876532211 1 2235799999999999999999
Q ss_pred HhcCCC
Q 044682 465 NNSIKN 470 (755)
Q Consensus 465 ~~~~~~ 470 (755)
++.+..
T Consensus 117 l~~g~~ 122 (127)
T cd04819 117 AERNDT 122 (127)
T ss_pred HhcCCc
Confidence 987543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=65.89 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=55.1
Q ss_pred EEeecCCceEEEEEEEEecCCCCceEEEEEecC--------Cce-----------EEEEEceeEEEecCCeEEEEEEEEE
Q 044682 666 IAIPDLNESVTITRRVKNVGTHNSSYEANVEGV--------DGV-----------SVVVEPNNLSFTEYGEERTFKVTFT 726 (755)
Q Consensus 666 i~~~~~~~~~~~~~tv~nv~~~~~~y~~~~~~~--------~g~-----------~v~v~p~~~~~~~~g~~~~~~v~~~ 726 (755)
|++++.....+++++|+|.|+...+|+++.... .|. .+...|.++++ ++|++++|+|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 455666667899999999999999999976611 111 56778889999 8999999999999
Q ss_pred eccCCCCCCCCCCeEEEEEEEECCCC
Q 044682 727 PERNVEPKPKAEKYIFGKLIWSDSDG 752 (755)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 752 (755)
+.... .... ..+++|+|.+++...
T Consensus 80 ~p~~~-~~~~-~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 80 PPSGL-DASN-GPFYEGFITFKSSDG 103 (112)
T ss_dssp --GGG-HHTT--EEEEEEEEEESSTT
T ss_pred ehhcC-Cccc-CCEEEEEEEEEcCCC
Confidence 93100 0133 678999999987643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.004 Score=58.27 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=58.3
Q ss_pred CCCCccceEEEEecCCc-------chhh-------HHHHHHcCccEEEEecCCCC-------CCCCC-CCCCcccEEEee
Q 044682 397 DPKKINGKILLCMNHTH-------GIDK-------SQLAAQAGAAGLILVNPKQL-------ENESL-PLPYHLPTSLVE 454 (755)
Q Consensus 397 ~~~~~~gkivl~~~~~~-------~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 454 (755)
+..+++||||++.++.| +..| ...++++||.++|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999888 4445 68999999999999985321 11111 223469999999
Q ss_pred HhhHHHHHHHHhcCCCcEE
Q 044682 455 FDDAQSIIAYNNSIKNPVA 473 (755)
Q Consensus 455 ~~~g~~l~~~~~~~~~~~~ 473 (755)
.+++..|...++.+..+..
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0051 Score=60.12 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC------------------CCCCC------------C---
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL------------------ENESL------------P--- 443 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~------------------~~~~~------------~--- 443 (755)
..+++|||+|++++.| +.+|..+++++||+|+|+|++... ++.+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4579999999999999 899999999999999999988421 00000 0
Q ss_pred -CCCcccEEEeeHhhHHHHHHHHhc
Q 044682 444 -LPYHLPTSLVEFDDAQSIIAYNNS 467 (755)
Q Consensus 444 -~~~~~p~~~i~~~~g~~l~~~~~~ 467 (755)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013588999999999999998754
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=64.04 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=65.3
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC------CCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCC
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL------ENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKN 470 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 470 (755)
..++++|+++..||.| |.+|...++.+||.++++.|+..+ ++.....+..||+++|.+++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4578999999999999 999999999999999999999542 223333457899999999999999987777777
Q ss_pred cEEEEe
Q 044682 471 PVASVS 476 (755)
Q Consensus 471 ~~~~i~ 476 (755)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 666554
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.012 Score=55.37 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=47.5
Q ss_pred ceeecCC-CCCCCCCCCCCCCCCccceEEEEecCCc-------------------chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSM-IGNLECNPGAIDPKKINGKILLCMNHTH-------------------GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~-~~~~~c~~~~~~~~~~~gkivl~~~~~~-------------------~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
|+|+.+. .....|....+...|++||||++.++.| +..|...++++||.|+|++++..
T Consensus 23 elVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 23 PLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred eeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 7777663 2456788888888899999999998865 34699999999999999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.019 Score=53.66 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=46.9
Q ss_pred ceeecCCC-CCCCCCCCCCCCCCccceEEEEecCCc-------------chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSMI-GNLECNPGAIDPKKINGKILLCMNHTH-------------GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~~-~~~~c~~~~~~~~~~~gkivl~~~~~~-------------~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
||||.+.. ....|....+...+++|||||+.++.| +..|..++.++||.|+|++++..
T Consensus 25 elVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 25 PLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 66766542 346687777778899999999999875 44799999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.049 Score=51.78 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=56.5
Q ss_pred ceeecCCC-CCCCCCCCCCCCCCccceEEEEecCC------------------c-chhhHHHHHHcCccEEEEecCCCCC
Q 044682 379 PLTQHSMI-GNLECNPGAIDPKKINGKILLCMNHT------------------H-GIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 379 plv~~~~~-~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
|+||.+.. ....|....+...+++|||||+.++. | +..|..++.+.||.|+|++++....
T Consensus 23 ~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 23 PVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred eEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 67776643 35667777777889999999998763 3 5689999999999999999986432
Q ss_pred C---CCCCCCCcccEEEeeHhhHHHHHH
Q 044682 439 N---ESLPLPYHLPTSLVEFDDAQSIIA 463 (755)
Q Consensus 439 ~---~~~~~~~~~p~~~i~~~~g~~l~~ 463 (755)
. ........-..+.++......++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 103 SGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred CcccccccccCccceEEechHHHHHHhh
Confidence 1 111110111155566665555554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.044 Score=51.55 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC
Q 044682 399 KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 399 ~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
-+++|||+|++.|.. +..|..++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999 99999999999999999999854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.052 Score=54.95 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=42.4
Q ss_pred ceeecCCCCCCCCCCCCCC-----CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSMIGNLECNPGAID-----PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
+|||.. +|....++ ..+++|||||++++.+ +.+|..+++++||+|+|+|++..
T Consensus 48 ~lVyvn-----yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 48 ELVYAN-----YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred EEEEcC-----CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 566644 35544332 5689999999999999 78999999999999999999854
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.2 Score=41.92 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=36.9
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHN-SSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
.+.+++.+|+|.|... ...+++++.|.|-++...|..+.--++|+++++++++++
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEEC
Confidence 5788999999998654 568888999999998888887753389999999999998
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.11 Score=48.36 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCC------C----CCCCcccEEEeeHh
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENES------L----PLPYHLPTSLVEFD 456 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~------~----~~~~~~p~~~i~~~ 456 (755)
..+|.+... .-+..+.|.|++||.| |..|..+++++||..+|+.++....++. + .+...+|++.+-..
T Consensus 74 p~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 456765442 2357789999999999 9999999999999999999876543322 1 23568999999888
Q ss_pred hHHHHHHHHhcCCCcEEEEe
Q 044682 457 DAQSIIAYNNSIKNPVASVS 476 (755)
Q Consensus 457 ~g~~l~~~~~~~~~~~~~i~ 476 (755)
+|..+..-++.-...-+.|.
T Consensus 153 ~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred ceEEEehhHHHhCCccEEEe
Confidence 88777766665555444443
|
|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=90.95 E-value=3.9 Score=35.88 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=44.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
...+.+++|+|.+.....|++.......-.++++|..-.+ .+|++.+++|+|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~ 73 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP 73 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe
Confidence 4677888999999999999987654335567788877667 79999999999996
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.66 Score=49.85 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCCCCCCC---CCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCCC----CCCcccEEEeeHhhHHH
Q 044682 389 LECNPGAI---DPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESLP----LPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 389 ~~c~~~~~---~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 460 (755)
.+|++... ..+.....++|+.|++| |.+|..+++++|..++|+||+....+.... ....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45766433 24556778999999999 999999999999999999998654433222 24568899999999999
Q ss_pred HHHHHhcC
Q 044682 461 IIAYNNSI 468 (755)
Q Consensus 461 l~~~~~~~ 468 (755)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875543
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=90.32 E-value=2 Score=39.01 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=39.3
Q ss_pred eEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEec
Q 044682 674 SVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 674 ~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
.-.++++|.|....+.+|++++..++|+.+......+++ ++|++.++.|.+.+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 456889999999999999999999889999654578889 899999999999983
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=87.66 E-value=5.9 Score=36.31 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=50.9
Q ss_pred CceEEEEEEEEecCCCCceEEEEEecC----Cce-E-------------------EEEEceeEEEecCCeEEEEEEEEEe
Q 044682 672 NESVTITRRVKNVGTHNSSYEANVEGV----DGV-S-------------------VVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 672 ~~~~~~~~tv~nv~~~~~~y~~~~~~~----~g~-~-------------------v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
+.+.+++++|+|.++...+|.+.+... .|+ . +++ |..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 468899999999999999999865421 221 1 222 455888 89999999999998
Q ss_pred ccCCCCCCCCCCeEEEEEEEE
Q 044682 728 ERNVEPKPKAEKYIFGKLIWS 748 (755)
Q Consensus 728 ~~~~~~~~~~~~~~~g~~~~~ 748 (755)
....- .+-+-|.|.++
T Consensus 104 ----P~~~f-~G~ilGGi~~~ 119 (121)
T PF06030_consen 104 ----PKKAF-DGIILGGIYFS 119 (121)
T ss_pred ----CCCCc-CCEEEeeEEEE
Confidence 33334 57788888875
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.9 Score=41.39 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCCCCccceEEEEecCCc-c-------------------hhhHHHHHHcCccEEEEecCC
Q 044682 395 AIDPKKINGKILLCMNHTH-G-------------------IDKSQLAAQAGAAGLILVNPK 435 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~-~-------------------~~~~~~~~~~Ga~g~i~~~~~ 435 (755)
.+...|++||||++..+.. + ..|...+.+.||.|+|++.+.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4556799999999996553 1 248999999999999999764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 755 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-108 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-90 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 9e-13 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 5e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 9e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 1e-04 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-04 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-04 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-04 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 3e-04 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 3e-04 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-04 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-04 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 3e-04 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 3e-04 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 3e-04 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 3e-04 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-04 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 3e-04 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-04 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 3e-04 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 5e-04 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-04 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 8e-04 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 8e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 8e-04 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 8e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 8e-04 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 8e-04 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 9e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 639 bits (1648), Expect = 0.0
Identities = 222/661 (33%), Positives = 335/661 (50%), Gaps = 44/661 (6%)
Query: 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWR 170
TT + DFL L + W G+DVI+ V+DSG+WPES SF D+GM +P RW+
Sbjct: 1 TTHTSDFLKLNP-----SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 171 GICQNDTHYG-FQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAS 229
GIC+ T + CNRKLIG Y+N+G + ++ARD DGHGTH AS
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKG------ILANDPTVNITMNSARDTDGHGTHCAS 109
Query: 230 TAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289
GNF VS FG GTA+G +PRARLA YK + SD+++A D A+ D
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-----NEGTFTSDLIAAMDQAVAD 164
Query: 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLL 349
GVD++S+S G ++DAI+I SF AMM G+LV A+AGN GP ++ N +PW+L
Sbjct: 165 GVDMISISYGYRFI---PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWIL 221
Query: 350 TVGASTMDREFTSYVTLGDEQIFK---------EIMQGPLTQHSMIGNLECNPGAIDPKK 400
V + DR F +TLG+ + + P+ + + + +
Sbjct: 222 CVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVEN 281
Query: 401 INGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQS 460
I++C ++ D+ ++ +A I ++ + P +V + +
Sbjct: 282 PENTIVICDDNGDFSDQMRIITRARLKAAIFISED--PGVFRSATFPNPGVVVNKKEGKQ 339
Query: 461 IIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAA 520
+I Y + P A+++ +T +TKP+P + S+RGPS I KPDI APGV I+AA
Sbjct: 340 VINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA 399
Query: 521 YSEAVAPSKSPSDDRR-IPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTA 579
Y V + ++ + GTSM+ PH +GIA +LK HP+WSP+AI+SA+MTTA
Sbjct: 400 YPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459
Query: 580 TTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQS 639
D+T K + ATP + GAGHV+PN A+DPGLVYD + DY++ +CS + +
Sbjct: 460 DPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEE 519
Query: 640 IINNFTTPEIHSCPKSFSILDFNYPT-IAIPDLNES-----VTITRRVKNVGTHNSSYEA 693
S S D NYP+ IA+ + + R V NVG ++Y+A
Sbjct: 520 QFKTIARSSA-SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKA 578
Query: 694 NVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSDGL 753
++ ++ V P L F E++++ +T + + G + W + +G
Sbjct: 579 KLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDE-----GQSRNVGSITWVEQNGN 633
Query: 754 H 754
H
Sbjct: 634 H 634
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 619 bits (1597), Expect = 0.0
Identities = 245/664 (36%), Positives = 355/664 (53%), Gaps = 75/664 (11%)
Query: 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWR 170
TTRSWDFLG + + + ++++GV+D+G+WPES SF DEG P P +W+
Sbjct: 1 TTRSWDFLGFPL-------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 171 GICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST 230
G C+ T F+CNRK+IG R Y+ G+ + + RD +GHGTH AST
Sbjct: 54 GTCE--TSNNFRCNRKIIGARSYHIGRPI----------SPGDVNGPRDTNGHGTHTAST 101
Query: 231 AVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG 290
A G V+ +++G G GTA+GG P AR+A+YK CWN C D+DIL+A+DDAI DG
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-----GCSDTDILAAYDDAIADG 156
Query: 291 VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLT 350
VD++S+S+G YF DAIAIGSFHA+ GIL +AGN GP T +L+PWLL+
Sbjct: 157 VDIISLSVG--GANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLS 214
Query: 351 VGASTMDREFTSYVTLGDEQIFK-------EIMQGPLTQHSMIGNL--------ECNPGA 395
V ASTMDR+F + V +G+ Q F+ + PL I N C +
Sbjct: 215 VAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKS 274
Query: 396 IDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEF 455
++P + GKI++C + GAAG+++ + Y LP+S+++
Sbjct: 275 VNPNLLKGKIVVC--EASFGPHEFFKSLDGAAGVLMTSN----TRDYADSYPLPSSVLDP 328
Query: 456 DDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV 515
+D + + Y SI++P A++ T +P + FSSRGP+ ++IKPDI+ PGV
Sbjct: 329 NDLLATLRYIYSIRSPGATIFK-STTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGV 387
Query: 516 EIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
EI+AA+ R FN GTSMS PHI+GIA +KT +P WSPAAIKSA+
Sbjct: 388 EILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSAL 444
Query: 576 MTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRG 635
MTTA+ + F YG+GHVNP A+ PGLVYD + DY+ ++C +G
Sbjct: 445 MTTASPMNARFNP---------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQG 495
Query: 636 YNQSIINNFTTPEIHSCP--KSFSILDFNYPTIAI---PDLNESVTITRRVKNVGTHNSS 690
YN + T + +C + + D NYP+ + P + R + +V S+
Sbjct: 496 YNTQAVRRI-TGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST 554
Query: 691 YEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750
Y A + G+++ V PN LSF G+ ++F +T + L+W S
Sbjct: 555 YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-------SIKGFVVSASLVW--S 605
Query: 751 DGLH 754
DG+H
Sbjct: 606 DGVH 609
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 446 bits (1148), Expect = e-144
Identities = 113/663 (17%), Positives = 195/663 (29%), Gaps = 105/663 (15%)
Query: 124 NVISQ-NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQND-----T 177
N SQ + K G ++ VID+G +++ + + +
Sbjct: 1 NDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGI 60
Query: 178 HYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVA 237
YG N K+ Y + HGTH + G
Sbjct: 61 TYGEWVNDKVAYYHDY------------------SKDGKTAVDQEHGTHVSGILSG---- 98
Query: 238 NVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS 297
N +G P A+L + + A DAI+ G V+++S
Sbjct: 99 NAPSETKEPYRLEGAMPEAQLLLMRVEIVNGL---ADYARNYAQAIRDAINLGAKVINMS 155
Query: 298 LGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG-------------PKPDTV--V 342
G + D +A G+ +V +AGN+ P V
Sbjct: 156 FGNAA-LAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTP 214
Query: 343 NLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIM------QGPLTQHSMIGNLECNPGAI 396
A LTV + + D++ T V + + M + +
Sbjct: 215 AAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKED 274
Query: 397 DPKKINGKILLCMNHTHG-IDKSQLAAQAGAAGLILVNPK-QLENESLPLPYHLPTSLVE 454
D K + GKI L DK A +AGA G+++ + + + LP +P + +
Sbjct: 275 DFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS 334
Query: 455 FDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPG 514
D + + + T +++ FSS G + IKPDI APG
Sbjct: 335 RKDGLLLKDN----PQKTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPG 388
Query: 515 VEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSA 574
+I+++ + + GTSMS P ++GI GLL+ + P S
Sbjct: 389 QDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSE 435
Query: 575 IMTTATTTDHTGKNPITDYDGLK-ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICS 633
+ A + + D D +P + GAG V+ A + ++ D S
Sbjct: 436 RLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVH 493
Query: 634 RGYNQSIIN-NFTTPEIHSCPKSFSILDFNYPTIAIPDLNESVTITRRVKNVGTHNSSYE 692
P+ Y D + V S
Sbjct: 494 LNNVSDKFEVTVNVHNKSDKPQE-----LYYQATVQTDKVDGKHFALAP-KVLYETSWQ- 546
Query: 693 ANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEK---YIFGKLIWSD 749
+ + + V R + K ++ G + +
Sbjct: 547 ---------KITIPA--------NSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQ 589
Query: 750 SDG 752
Sbjct: 590 DPT 592
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 81/522 (15%), Positives = 159/522 (30%), Gaps = 138/522 (26%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ + + I +IDSG + +H N
Sbjct: 11 VGATVLSDSQ--AGNRTICIIDSGY------------------------DRSHNDLNANN 44
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
++ T + + HGTH A T N
Sbjct: 45 -----------------VTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANN 79
Query: 246 YGTA-KGGSPRARLASYKSCWNVNGQPLDCR----DSDILSAFDDAI-HDGVDVLSVSLG 299
G + A + K + S +++A D + G +V+++SLG
Sbjct: 80 EGVVGVMPNQNANIHIVKV--------FNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131
Query: 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDRE 359
+T ++A+ +G+L++AAAGN G + +++V A + +
Sbjct: 132 GSG--STTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLD 185
Query: 360 FTSYVTLGDE--------QIFKEIMQGPLTQHS-----------MIGNLECNPGAIDPKK 400
++ D+ I + G + +
Sbjct: 186 HAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYA 245
Query: 401 INGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQS 460
+ + G + +++ N+ P T + A+
Sbjct: 246 PAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKG 305
Query: 461 IIAYNNS----IKNPV---ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAP 513
II Y+NS ++NP A+ + + + + G ST ++
Sbjct: 306 IIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQST--------TVSNQ 357
Query: 514 GVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKS 573
G + Y+ GTSM+TPH+SG+A L+ + HP+ S + +++
Sbjct: 358 GNQDYEYYN---------------------GTSMATPHVSGVATLVWSYHPECSASQVRA 396
Query: 574 AIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
A+ TA G++ + G G +N +A
Sbjct: 397 ALNATADDLSVAGRDN------------QTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 70/304 (23%), Positives = 109/304 (35%), Gaps = 73/304 (24%)
Query: 75 RHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQ-------TTRSWDFLGLEK-DNVI 126
I A ++ + +A + + VQ + + GL++ +
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 127 SQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRK 186
+ WN G G + IG+ID+G+ +H Q
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDA------------------------SHPDLQ---- 158
Query: 187 LIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGY 246
G++ F +T D +GHGTH AS A G
Sbjct: 159 ---------GKVIGWV----DF--VNGKTTPYDDNGHGTHVASIAAGTG-------AASN 196
Query: 247 GTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILS----AFDDAIHDGVDVLSVSLG-EP 301
G KG +P A+L K N G SDI++ A + G+ V+++SLG
Sbjct: 197 GKYKGMAPGAKLVGIKVL-NGQG---SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ 252
Query: 302 SHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTMDRE 359
S T+ A+ +A G++VV AAGN GP TV + A ++TVGA
Sbjct: 253 SSDGTDSLSQAVN----NAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDV 308
Query: 360 FTSY 363
T +
Sbjct: 309 ITDF 312
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 4e-22
Identities = 50/141 (35%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
+T FSSRGP+ N +KP++ APG IIAA A S + A GT+M+
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAAR----ASGTSMGQPINDYYTAAPGTAMA 361
Query: 549 TPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608
TPH++GIA LL HP W+P +K+A++ TA + YGAG V
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRV 410
Query: 609 NPNSAMDPGLVYDLSFYDYLS 629
N A L+F Y+S
Sbjct: 411 NAYKAAYYDNYAKLTFTGYVS 431
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 2e-21
Identities = 46/238 (19%), Positives = 83/238 (34%), Gaps = 36/238 (15%)
Query: 483 NTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNAC 542
K + ++SR P + APG I + + + N
Sbjct: 412 REKLPGNVYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQ--------FTMSKSQLMN-- 459
Query: 543 FGTSMSTPHISGIAGL----LKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598
GTSM+ PH++G L LK + ++SP +IK AI TAT + D
Sbjct: 460 -GTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT--------KLGYVD---- 506
Query: 599 TPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSI 658
PF G G +N A + + S + L + G N + + +++
Sbjct: 507 -PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRN-SIDYNV 564
Query: 659 -LDFNYPTIAIPDLNESVTITRRVKNVGT----HNSSYEANVEGVDGVSVVVEPNNLS 711
++ + D + R+ + + ++ G ++V V+P L
Sbjct: 565 YIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 93.4 bits (231), Expect = 1e-19
Identities = 51/318 (16%), Positives = 99/318 (31%), Gaps = 43/318 (13%)
Query: 53 NFLGSFFGSVKKARDSISCSYGRHINGFA--AILEEEHAQQLAKHPEVLSIFLDEGRKVQ 110
+ + +K D + +I A ++ H A + F +
Sbjct: 111 DPEKAVRVGLKSFSDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEA 170
Query: 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFS---DEGMGPVPL 167
+ WD + K+N+ + N I D ++P + + D
Sbjct: 171 SKLPWD-KKILKENLDFELEMLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQGDL- 228
Query: 168 RWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPE-HSTARDLDGHGTH 226
Y + ++ + + + + HGTH
Sbjct: 229 ---DQALRIGEYSRT----------HETRNVDDFLSISVNVHDEGNVLEVVGMSSPHGTH 275
Query: 227 AASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA 286
+S A GN + G +P A++ S G + ++ A
Sbjct: 276 VSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSMET--GTALVRAMTKV 324
Query: 287 I-----HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV 341
+ +DV+++S GE ++ + + + +G++ VA+AGN GP TV
Sbjct: 325 MELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNK--YGVVWVASAGNHGPALCTV 382
Query: 342 VN----LAPWLLTVGAST 355
P L+ VGA
Sbjct: 383 GTPPDISQPSLIGVGAYV 400
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 23/249 (9%)
Query: 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGM 190
N+ + I +ID F + V W + T + + +
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRD- 99
Query: 191 RYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAK 250
+ + + P L+ H H ST VG
Sbjct: 100 ---QGLKGKEKEEALEAVIPDT--KDRIVLNDHACHVTSTIVGQ---------EHSPVF- 144
Query: 251 GGSPRARLASYKSCWNVNGQPLD-CRDSDILSAFDDAIHDGVDVLSVSLGEP--SHKNTE 307
G +P R+ + + G D ++ A D A+ G +++ + P + + E
Sbjct: 145 GIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEE 204
Query: 308 YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLG 367
AI + +L+V+ GN + + + P L VGA+ +D + G
Sbjct: 205 ILVQAIK----KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWG 260
Query: 368 DEQIFKEIM 376
+ I+
Sbjct: 261 GNNTKEGIL 269
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 31/131 (23%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
FS+ G + K I APG EI+ A P + + GTSM+
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQ---------PCTEEPVRLT---GTSMA 294
Query: 549 TPHISGIAGLLKTLH----PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604
P ++GI+ LL +L A+++A++ TA D P
Sbjct: 295 APVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE----------EPERCL 344
Query: 605 AGHVNPNSAMD 615
G VN AM
Sbjct: 345 RGFVNIPGAMK 355
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 55/287 (19%), Positives = 91/287 (31%), Gaps = 84/287 (29%)
Query: 92 LAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVW 151
+ K + +D+ + G+E + + W G IIGVID+G
Sbjct: 1 MRKFRLIPYKQVDKVSALSEV-PM---GVEI---VEAPAVWRASAKGAGQIIGVIDTGC- 52
Query: 152 PESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPT 211
H +I N +
Sbjct: 53 -----------------------QVDHPDLA-------------ERIIGGV--NLTTDYG 74
Query: 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQP 271
+ + D +GHGTH A T G G G +P+A L K+
Sbjct: 75 GDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKA-------- 117
Query: 272 LDCR----DSDILSAFDDAI------HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAM 321
L I A A+ + + ++++SLG P+ +E DA+ +A+
Sbjct: 118 LSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTD--SEELHDAVK----YAV 171
Query: 322 MHGILVVAAAGNEGPKPDTVVNL-----APWLLTVGASTMDREFTSY 363
+ + VV AAGNEG + ++ VGA D + +
Sbjct: 172 SNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDF 218
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 38/132 (28%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
+++ F++ DI APGV I + Y ++ S GT+M+
Sbjct: 214 RLSDFTNTNEE--------IDIVAPGVGIKSTYLDSGYAELS-------------GTAMA 252
Query: 549 TPHISGIAGLLKTLHPD-----WSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603
PH++G L+ L D S I + ++ AT T +
Sbjct: 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE------------GN 300
Query: 604 GAGHVNPNSAMD 615
G ++ +
Sbjct: 301 GFLTLDLVERIT 312
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 55/240 (22%), Positives = 86/240 (35%), Gaps = 69/240 (28%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ +A N+G G V + V+D+G+ TH
Sbjct: 11 VQAPAAHNRGLTGSGVKVAVLDTGI-------------------------STH------P 39
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
L + F P + +D +GHGTH A T N
Sbjct: 40 DLNIRGGAS-------------FVPGE--PSTQDGNGHGTHVAGTIAAL--------NNS 76
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKN 305
G G +P A L + K +G S I + A ++G+ V ++SLG PS
Sbjct: 77 IGVL-GVAPSAELYAVKVL-GASG---SGSVSSIAQGLEWAGNNGMHVANLSLGSPSP-- 129
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--PWLLTVGASTMDREFTSY 363
+ + A+ A G+LVVAA+GN G ++ A + VGA+ + S+
Sbjct: 130 SATLEQAVN----SATSRGVLVVAASGNSG--AGSISYPARYANAMAVGATDQNNNRASF 183
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 5e-18
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
FS G DI APGV + + Y + S + GTSM+
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYPGSTYASLN-------------GTSMA 217
Query: 549 TPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608
TPH++G A L+K +P WS I++ + TAT+ T YG+G V
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------------LYGSGLV 262
Query: 609 NPNSA 613
N +A
Sbjct: 263 NAEAA 267
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 4e-20
Identities = 54/259 (20%), Positives = 91/259 (35%), Gaps = 57/259 (22%)
Query: 124 NVISQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQ 182
++ + A + G+ I+ V D+G+ G + H F+
Sbjct: 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDT------------------GRNDSSMHEAFR 47
Query: 183 CNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVF 242
G+I ++ Y + A D +GHGTH A + +GN
Sbjct: 48 -------------GKI-------TALYALGRTNNANDTNGHGTHVAGSVLGNG------- 80
Query: 243 GNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
G A P+A L +G L S++ + F A G + + S G
Sbjct: 81 STNKGMA----PQANLVFQS--IMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV 134
Query: 303 HKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTMDREF 360
N Y D+ + + + + ++ AAGNEGP T+ A +TVGA+ R
Sbjct: 135 --NGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS 191
Query: 361 TSYVTLGDEQIFKEIMQGP 379
+ + +GP
Sbjct: 192 FGSYADNINHVAQFSSRGP 210
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-17
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
N+I + FSSRGP+ IKPD+ APG I++A S
Sbjct: 175 TAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTKDG--RIKPDVMAPGTFILSARS 232
Query: 523 --EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580
+ + D + GTSM+TP ++G L+ K +++ A
Sbjct: 233 SLAPDSSFWANHDSKYAYMG---GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAAL 289
Query: 581 TTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYD 621
+ GL G G V + +++ V +
Sbjct: 290 I--AGAADI-----GLGYPNGNQGWGRVTLDKSLNVAYVNE 323
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 6e-20
Identities = 56/316 (17%), Positives = 89/316 (28%), Gaps = 82/316 (25%)
Query: 75 RHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKD--------NVI 126
+ I + +L K P V + D + SW G + +
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 127 SQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
S W+ + + V+D+GV + H
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGV------------------------DYDHPDLA-AN 125
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+ + D +GHGTH T N
Sbjct: 126 IAWCVSTLRGKVS-------------TKLRDCADQNGHGTHVIGTIAAL--------NND 164
Query: 246 YGTAKGGSPRARLASYKSC----------------WNVNGQPLDCRDSDILSAFDDAIHD 289
G G +P ++ S + + G D D
Sbjct: 165 IGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223
Query: 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--PW 347
+V+S+SLG P+ Y D I A GI++VAA+GNEG + A P
Sbjct: 224 AAEVISMSLGGPAD--DSYLYDMII----QAYNAGIVIVAASGNEG--APSPSYPAAYPE 275
Query: 348 LLTVGASTMDREFTSY 363
++ VGA + S+
Sbjct: 276 VIAVGAIDSNDNIASF 291
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 48/140 (34%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
+ FS+R P +++APGV+I++ Y P D + GT+M+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTY---------PDDS----YETLMGTAMA 323
Query: 549 TPHISGIAGLLKTLH-------------PDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595
TPH+SG+ L++ + D S ++ + TA TG +
Sbjct: 324 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA------ 377
Query: 596 LKATPFEYGAGHVNPNSAMD 615
+YG G V A+
Sbjct: 378 ------DYGYGVVRAALAVQ 391
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPST----INPNIIKPDITAPGVEII 518
A N+I VA++ + ++ +SSRG + +I+APG +
Sbjct: 182 ALPNAI--AVAAL----ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVY 235
Query: 519 AAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578
+ + + S GTSM+TPH+SG+A + +P S ++S +
Sbjct: 236 STWYNGGYNTIS-------------GTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQER 282
Query: 579 ATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609
A + D G D + G G
Sbjct: 283 AKSVDIKGGYGAAIGD-----DYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 55/245 (22%), Positives = 86/245 (35%), Gaps = 63/245 (25%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
I N G + I V+D+GV N +H
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGV------------------------NTSHPDLV--- 45
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+E + + + TP +++ D +GHGTH A TA+ +
Sbjct: 46 ----------NNVEQCK--DFTGATTPINNSCTDRNGHGTHVAGTALA------DGGSDQ 87
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGV-----DVLSVSLGE 300
G G +P A L +YK +G DI +A A ++S+SLG
Sbjct: 88 AGIY-GVAPDADLWAYKVL-LDSG---SGYSDDIAAAIRHAADQATATGTKTIISMSLGS 142
Query: 301 PSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--PWLLTVGASTMDR 358
+ N A+ +A G+L+VAAAGN G T+ P + V A +
Sbjct: 143 SA--NNSLISSAVN----YAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ 196
Query: 359 EFTSY 363
+ +Y
Sbjct: 197 QNGTY 201
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 9e-19
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
+ D +GHGTH A T N G G +P L + K N +G
Sbjct: 55 AYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL-NSSG---SG 101
Query: 275 RDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE 334
S I+S + A +G+DV+++SLG S + K A+ +A G++VVAAAGN
Sbjct: 102 SYSGIVSGIEWATTNGMDVINMSLGGASG--STAMKQAVD----NAYARGVVVVAAAGNS 155
Query: 335 GPKPDTVVNL----APWLLTVGASTMDREFTSY 363
G T ++ VGA + S+
Sbjct: 156 GNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASF 188
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
N+I P A V + FSS G + ++ APG + + Y
Sbjct: 159 GSTNTIGYP-AKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY- 208
Query: 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582
P++ + GTSM++PH++G A L+ + HP+ S + +++ + +TAT
Sbjct: 209 --------PTNT----YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
Query: 583 DHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613
+ F YG G +N +A
Sbjct: 257 ---------------GSSFYYGKGLINVEAA 272
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
+ +D + HGTH A T N G G +P A L + K +G
Sbjct: 56 NPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVL-GADG---SG 102
Query: 275 RDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE 334
+ S I++ + AI + +DV+++SLG PS + K A+ A+ G++VVAAAGNE
Sbjct: 103 QYSWIINGIEWAIANNMDVINMSLGGPSG--SAALKAAVD----KAVASGVVVVAAAGNE 156
Query: 335 GPKPDTVVNL----APWLLTVGASTMDREFTSY 363
G + P ++ VGA + S+
Sbjct: 157 GTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASF 189
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 36/127 (28%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
Q FSS GP + D+ APGV I + P + + A GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMA 223
Query: 549 TPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608
+PH++G A L+ + HP+W+ ++S++ T T F YG G +
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYYGKGLI 268
Query: 609 NPNSAMD 615
N +A
Sbjct: 269 NVQAAAQ 275
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 8e-18
Identities = 67/367 (18%), Positives = 104/367 (28%), Gaps = 115/367 (31%)
Query: 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAIL 84
+Y+V L K T L + + + I + + GF +
Sbjct: 77 TYVVVL------KEETHLS---QSERTARRLQAQ-AARRGYLTKILHVFHGLLPGFLVKM 126
Query: 85 EEEHAQQLAKHPEVLSIFLDEGRKV-QTTRSWDFLGLEKDNVISQNSAWNKGRF----GE 139
+ + K P V I D V + W LE+ I+ G
Sbjct: 127 SGDLLELALKLPHVDYIEED--SSVFAQSIPW---NLER---ITPPRYRADEYQPPDGGS 178
Query: 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIE 199
V + ++D+ + H +
Sbjct: 179 LVEVYLLDTSI------------------------QSDHREIE----------------- 197
Query: 200 HARAQNSSFYPTPE------HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGS 253
R + F PE H A D HGTH A G G AKG
Sbjct: 198 -GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVS----------GRDAGVAKG-- 244
Query: 254 PRARLASYKSCWNVNGQPLDCR----DSDILSAFDDAIHD------GVDVLSVSLGEPSH 303
A + S + V L+C+ S L + G V+ + L
Sbjct: 245 --ASMRSLR----V----LNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY- 293
Query: 304 KNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNL---APWLLTVGASTMDREF 360
+ A G+++V AAGN D + AP ++TVGA+ +
Sbjct: 294 --SRVLNAACQ----RLARAGVVLVTAAGNFR--DDACLYSPASAPEVITVGATNAQDQP 345
Query: 361 TSYVTLG 367
+ TLG
Sbjct: 346 VTLGTLG 352
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
D+ APG +II A S+ S S GTS + H++GIA ++ + P+ +
Sbjct: 360 DLFAPGEDIIGASSDCSTCFVSQS-----------GTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 569 AAIKSAIMTTATT 581
A ++ ++ +
Sbjct: 409 AELRQRLIHFSAK 421
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 9e-18
Identities = 49/242 (20%), Positives = 82/242 (33%), Gaps = 70/242 (28%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
I AW+ G I ++D+GV H +
Sbjct: 18 IQAPQAWDIAE-GSGAKIAIVDTGV------------------------QSNHPDLA-GK 51
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST--AVGNFVANVSVFG 243
+ G + + ST ++ +GHGTH A AV N
Sbjct: 52 VVGGWDFVDND------------------STPQNGNGHGTHCAGIAAAVTN--------- 84
Query: 244 NGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH 303
N G A G +P+A + + + + +G + + + A G V+S+SLG
Sbjct: 85 NSTGIA-GTAPKASILAVRVL-DNSG---SGTWTAVANGITYAADQGAKVISLSLGGTVG 139
Query: 304 KNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--PWLLTVGASTMDREFT 361
+ A+ +A G +VVAAAGN G A + V ++ + +
Sbjct: 140 --NSGLQQAVN----YAWNKGSVVVAAAGNAG--NTAPNYPAYYSNAIAVASTDQNDNKS 191
Query: 362 SY 363
S+
Sbjct: 192 SF 193
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 37/132 (28%)
Query: 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACF 543
T + + FS+ G D+ APG I + Y P+ + +
Sbjct: 184 TDQNDNKSSFSTYGSWV--------DVAAPGSSIYSTY---------PTST----YASLS 222
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603
GTSM+TPH++G+AGLL S + I++AI TA D + T +
Sbjct: 223 GTSMATPHVAGVAGLLA--SQGRSASNIRAAIENTA--------------DKISGTGTYW 266
Query: 604 GAGHVNPNSAMD 615
G VN A+
Sbjct: 267 AKGRVNAYKAVQ 278
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 54/242 (22%), Positives = 83/242 (34%), Gaps = 69/242 (28%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ AW+ + I VID+GV + TH
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGV------------------------DYTHPDLDGKV 53
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST--AVGNFVANVSVFG 243
++ Y+ ++ + P + HGTH A A N
Sbjct: 54 ----IKGYD--------FVDNDYDPMDLN-------NHGTHVAGIAAAETN--------- 85
Query: 244 NGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH 303
N G A G +P R+ + + + SDI A A G +V+++SLG H
Sbjct: 86 NATGIA-GMAPNTRILAVR----ALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH 140
Query: 304 KNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--PWLLTVGASTMDREFT 361
T ++A+ +A G +VVAAAGN G T A ++ VGA
Sbjct: 141 --TTTLENAVN----YAWNKGSVVVAAAGNNG--SSTTFEPASYENVIAVGAVDQYDRLA 192
Query: 362 SY 363
S+
Sbjct: 193 SF 194
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 37/132 (28%)
Query: 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACF 543
++ FS+ G D+ APGV+I++ + +
Sbjct: 185 VDQYDRLASFSNYGTWV--------DVVAPGVDIVSTI---------TGNR----YAYMS 223
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603
GTSM++PH++G+A LL + I+ AI TA + T +
Sbjct: 224 GTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADK--------------ISGTGTYF 267
Query: 604 GAGHVNPNSAMD 615
G +N +A+
Sbjct: 268 KYGRINSYNAVT 279
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 1e-17
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 33/158 (20%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
Y I VA++ + ++ FSSR + APGV I++
Sbjct: 309 GYPGVI--QVAALD------YYGGTFRVAGFSSRSDG--------VSVGAPGVTILSTVP 352
Query: 523 EAVAPSKSPSDDRRIP-----FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMT 577
+ ++ ++ GTSM+ PH++G+ +L P+ P I+ +
Sbjct: 353 GEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLEN 412
Query: 578 TATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
TA + G + + G G V ++A+
Sbjct: 413 TAFDFNGNGWDH------------DTGYGLVKLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 6e-15
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQP 271
P + + GTH A T +G G G +P A++ +
Sbjct: 189 PAGTDSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVG 239
Query: 272 LD--CRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ D + + A G V++ S G + + K+A +AM HG+++V
Sbjct: 240 GNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGY--SYTMKEAFD----YAMEHGVVMVV 293
Query: 330 AAGNEGPKPDTVVNL---APWLLTVGASTMD 357
+AGN D+ P ++ V A
Sbjct: 294 SAGNNT--SDSHHQYPAGYPGVIQVAALDYY 322
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 33/144 (22%)
Query: 472 VASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSP 531
VA+++ + S G + + DI APG I +A + S
Sbjct: 218 VAALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRPDAKTGTGS- 269
Query: 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPIT 591
GTS +T +SG+ + + +P + +K ++ +A
Sbjct: 270 ------------GTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK--- 314
Query: 592 DYDGLKATPFEYGAGHVNPNSAMD 615
+N A+
Sbjct: 315 ----------VTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 37/262 (14%), Positives = 71/262 (27%), Gaps = 74/262 (28%)
Query: 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLI 188
+ + V++ V+DSGV G + +
Sbjct: 34 ETTMSLTDKNTPVVVSVVDSGV-------------------------AFIGGLS-DSEFA 67
Query: 189 GMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGT 248
+ + S +P + L HGT AS + YG
Sbjct: 68 KFSFTQ----------DGSPFPV---KKSEALYIHGTAMASLI-----------ASRYGI 103
Query: 249 AKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH-KNTE 307
G P A ++S + Q R + + + ++++S G+ +
Sbjct: 104 Y-GVYPHALISSRR-VIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASV 161
Query: 308 YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAP-----------------WLLT 350
+ + + L+VAA GN+G + ++
Sbjct: 162 WTELLSR----MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR 217
Query: 351 VGASTMDREFTSYVTLGDEQIF 372
V A R+ + V G
Sbjct: 218 VAALAQYRKGETPVLHGGGITG 239
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 42/265 (15%), Positives = 71/265 (26%), Gaps = 82/265 (30%)
Query: 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGM 190
+++ + I +ID+GV H + N
Sbjct: 138 SYDDLPKHANTKIAIIDTGV------------------------MKNHDDLKNN---FST 170
Query: 191 RYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAK 250
N + R D GHGT + N G G A
Sbjct: 171 DSKNLVPLNGFRGTEPEETGDV--HDVNDRKGHGTMVSGQTSAN--------GKLIGVA- 219
Query: 251 GGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEY-- 308
P + Y+ + A A +DG V+++S+G +
Sbjct: 220 ---PNNKFTMYRVF-GSKK----TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQ 271
Query: 309 ------------FKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA----------- 345
+ AI +A +VVAAAGN+G + L
Sbjct: 272 TFRKDEKVEYDALQKAIN----YAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV 327
Query: 346 -------PWLLTVGASTMDREFTSY 363
++TVG++ + +
Sbjct: 328 KDVPASMDNVVTVGSTDQKSNLSEF 352
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-15
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 30/137 (21%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP---------F 539
++ FS+ G + DI APG V + + +
Sbjct: 348 NLSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 540 NACFGTSMSTPHISGIAGLLKT-LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598
GT+++TP +SG L+ H + P + T+ ++ +
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS---------- 450
Query: 599 TPFEYGAGHVNPNSAMD 615
YG G ++ A++
Sbjct: 451 ---RYGHGELDVYKALN 464
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 54/270 (20%), Positives = 87/270 (32%), Gaps = 69/270 (25%)
Query: 119 GLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVW--PESKSFSDEGMGPVPLR---WRGIC 173
+ + W+ G G++V++ V+D+G+ + L G
Sbjct: 12 HYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRD-------------LNANVLPG-- 56
Query: 174 QNDTHYGFQCNRKLIGM---RYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST 230
Y F N ++ R + + D HG+H A T
Sbjct: 57 -----YDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGT 111
Query: 231 --AVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR---DSDILSAFDD 285
AV N N G A G + A++ ++ L DSDI
Sbjct: 112 IAAVTN---------NRIGVA-GVAYGAKVVPVRA--------LGRCGGYDSDISDGLYW 153
Query: 286 AI----------HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG 335
A + V+++SLG + + I A G LVV AAGNE
Sbjct: 154 AAGGRIAGIPENRNPAKVINMSLGSDGQCSYNA-QTMID----RATRLGALVVVAAGNEN 208
Query: 336 PKPDTVVNLA--PWLLTVGASTMDREFTSY 363
+ + +L+VGA+T S+
Sbjct: 209 -QNASNTWPTSCNNVLSVGATTSRGIRASF 237
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
FS+ G D+ APG +I++ S + ++ GTSM+
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMA 278
Query: 549 TPHISGIAGLLK----TLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604
TPH+SG+A L+ +++ + +PA +K +++T + P G
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS--------PFNGRLD-----RALG 325
Query: 605 AGHVNPNSAMD 615
+G V+ +A++
Sbjct: 326 SGIVDAEAAVN 336
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 47/257 (18%), Positives = 74/257 (28%), Gaps = 74/257 (28%)
Query: 126 ISQNSAWNKGRF-GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCN 184
+ S W+ + + V+D+GV + H
Sbjct: 15 VKAPSVWSITDGSVSVIQVAVLDTGV------------------------DYDHPDLA-A 49
Query: 185 RKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGN 244
+ + D +GHGTH T N
Sbjct: 50 NIAWCVSTLRGKVS-------------TKLRDCADQNGHGTHVIGTIAAL--------NN 88
Query: 245 GYGTAKGGSPRARLASYKSC----------------WNVNGQPLDCRDSDILSAFDDAIH 288
G G +P ++ S + + G D
Sbjct: 89 DIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDD 147
Query: 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA--P 346
D +V+S+SLG P+ Y D I A GI++VAA+GNEG + A P
Sbjct: 148 DAAEVISMSLGGPAD--DSYLYDMII----QAYNAGIVIVAASGNEG--APSPSYPAAYP 199
Query: 347 WLLTVGASTMDREFTSY 363
++ VGA + S+
Sbjct: 200 EVIAVGAIDSNDNIASF 216
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 48/140 (34%)
Query: 489 QMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMS 548
+ FS+R P +++APGV+I++ Y P D + GT+M+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTY---------PDDS----YETLMGTAMA 248
Query: 549 TPHISGIAGLLKTLH-------------PDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595
TPH+SG+ L++ + D S ++ + TA TG +
Sbjct: 249 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA------ 302
Query: 596 LKATPFEYGAGHVNPNSAMD 615
+YG G V A+
Sbjct: 303 ------DYGYGVVRAALAVQ 316
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 25/100 (25%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS+ G DI APG I +++ + + + + S GTSM++PH+
Sbjct: 190 FSNYGTCL--------DIYAPGSSITSSWYTSNSATNTIS-----------GTSMASPHV 230
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITD 592
+G+A L +P+ SPA + + + T AT + +TD
Sbjct: 231 AGVAALYLDENPNLSPAQVTNLLKTRAT------ADKVTD 264
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 57/270 (21%), Positives = 92/270 (34%), Gaps = 96/270 (35%)
Query: 109 VQTTRSWDFLGLEKDNVISQNSAWNKGRF-----GEDVIIGVIDSGVWPESKSFSDEGMG 163
Q + +W G+++ I Q + + G V VID+GV
Sbjct: 2 DQPSPTW---GIDR---IDQRNLPLDNNYHTDYDGSGVTAFVIDTGV------------- 42
Query: 164 PVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQN-SSFYPTPEHSTARDLDG 222
+TH F RA + F A D +G
Sbjct: 43 -----------LNTHNEFG------------------GRASSGYDFIDND--YDATDCNG 71
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR----DSD 278
HGTH A T G+ YG AK + + V L+C +S
Sbjct: 72 HGTHVAGTIG----------GSTYGVAKN----VNVVGVR----V----LNCSGSGSNSG 109
Query: 279 ILSAFDDAI--HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP 336
+++ + G V ++SLG + ++ DA+ A+ GI V AAGN+
Sbjct: 110 VIAGINWVKNNASGPAVANMSLGGGA---SQATDDAVN----AAVAAGITFVVAAGNDN- 161
Query: 337 KPDTVVNL---APWLLTVGASTMDREFTSY 363
+ A +TVG++T + +S+
Sbjct: 162 -SNACNYSPARAADAITVGSTTSNDSRSSF 190
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 25/100 (25%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS+ G D+ APG I +A+ + +++ + GTSM+TPH+
Sbjct: 188 FSNYGSCV--------DLFAPGASIPSAWYTSDTATQTLN-----------GTSMATPHV 228
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITD 592
+G+A L +P +PA++ SAI+ AT ++
Sbjct: 229 AGVAALYLEQNPSATPASVASAILNGAT------TGRLSG 262
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 54/270 (20%), Positives = 84/270 (31%), Gaps = 98/270 (36%)
Query: 109 VQTTRSWDFLGLEKDNVISQNSAWNKGRF-----GEDVIIGVIDSGVWPESKSFSDEGMG 163
Q+ W GL++ I Q + G V + VID+G+
Sbjct: 2 TQSPAPW---GLDR---IDQRDLPLSNSYTYTATGRGVNVYVIDTGI------------- 42
Query: 164 PVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNS-SFYPTPEHSTARDLDG 222
TH F RA+ +D +G
Sbjct: 43 -----------RTTHREFG------------------GRARVGYDALGGN----GQDCNG 69
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR----DSD 278
HGTH A T G YG AK L + + V LDC S
Sbjct: 70 HGTHVAGTIG----------GVTYGVAKA----VNLYAVR----V----LDCNGSGSTSG 107
Query: 279 ILSAFDDAIHDGVD--VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP 336
+++ D + V ++SLG + +A+ +++ G++ AAGN+
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLGGGV---STALDNAVK----NSIAAGVVYAVAAGNDN- 159
Query: 337 KPDTVVNL---APWLLTVGASTMDREFTSY 363
+ LTVGA+T S+
Sbjct: 160 -ANACNYSPARVAEALTVGATTSSDARASF 188
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 27/103 (26%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS+ G D+ APG +I +A+ + + S GTSM+TPH+
Sbjct: 188 FSNWGSCV--------DLFAPGSQIKSAWYDGGYKTIS-------------GTSMATPHV 226
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595
+G+A L + +P + + + A+ +N ++D G
Sbjct: 227 AGVAALYLQENNGLTPLQLTGLLNSRAS------ENKVSDTRG 263
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 56/268 (20%), Positives = 86/268 (32%), Gaps = 94/268 (35%)
Query: 110 QTTRSWDFLGLEKDNVISQNSAWNKGRF-----GEDVIIGVIDSGVWPESKSFSDEGMGP 164
Q+ W GL++ I Q + + G V VID+GV
Sbjct: 1 QSNAIW---GLDR---IDQRNLPLDRNYNANFDGFGVTAYVIDTGV-------------- 40
Query: 165 VPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHG 224
N+ H F R + G + + + + D +GHG
Sbjct: 41 ----------NNNHEEFG-GRSVSGYDFVDND------------------ADSSDCNGHG 71
Query: 225 THAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR----DSDIL 280
TH A T G+ YG AK + + V L C S ++
Sbjct: 72 THVAGTIG----------GSQYGVAKN----VNIVGVR----V----LSCSGSGTTSGVI 109
Query: 281 SAFDDAI--HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP 338
S D G V ++SLG + A+ A+ G+ + AAGN
Sbjct: 110 SGVDWVAQNASGPSVANMSLGGGQ---STALDSAVQ----GAIQSGVSFMLAAGNSN--A 160
Query: 339 DTVVNL---APWLLTVGASTMDREFTSY 363
D P +TVG++T +S+
Sbjct: 161 DACNTSPARVPSGVTVGSTTSSDSRSSF 188
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-12
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
D+ APG +II A S+ S S GTS + H++GIA ++ + P+ +
Sbjct: 208 DLFAPGEDIIGASSDCSTCFVSQS-----------GTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 569 AAIKSAIMTTATT 581
A ++ ++ +
Sbjct: 257 AELRQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 44/185 (23%), Positives = 62/185 (33%), Gaps = 50/185 (27%)
Query: 202 RAQNSSFYPTPE------HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPR 255
R + F PE H A D HGTH A G G AKG
Sbjct: 47 RVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVS----------GRDAGVAKG---- 92
Query: 256 ARLASYKSCWNVNGQPLDCR----DSDILSAFDDAIHD------GVDVLSVSLGEPSHKN 305
A + S + V L+C+ S L + G V+ + L
Sbjct: 93 ASMRSLR----V----LNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY--- 141
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNL---APWLLTVGASTMDREFTS 362
+ A G+++V AAGN D + AP ++TVGA+ + +
Sbjct: 142 SRVLNAACQ----RLARAGVVLVTAAGNFR--DDACLYSPASAPEVITVGATNAQDQPVT 195
Query: 363 YVTLG 367
TLG
Sbjct: 196 LGTLG 200
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS+ G DI APG I + + + S GTSM+TPHI
Sbjct: 193 FSNYGRVV--------DIFAPGTSITSTWIGGRTNTIS-------------GTSMATPHI 231
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATT 581
+G+A L L S A+ I T +T
Sbjct: 232 AGLAAYLFGLEGG-SAGAMCGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 61/273 (22%), Positives = 84/273 (30%), Gaps = 102/273 (37%)
Query: 110 QTTRSWDFLGLEKDNVISQNSAWNKGRF-----GEDVIIGVIDSGVWPESKSFSDEGMGP 164
Q +W GL + IS + + G + VID+GV
Sbjct: 4 QQGATW---GLTR---ISHRARGSTAYAYDTSAGAGACVYVIDTGV-------------- 43
Query: 165 VPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHG 224
DTH F+ RA+ Y STARD GHG
Sbjct: 44 ----------EDTHPDFE------------------GRAKQIKSYA----STARDGHGHG 71
Query: 225 THAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR----DSDIL 280
TH A T +G AK + K V LD S+I+
Sbjct: 72 THCAGTIG----------SKTWGVAKK----VSIFGVK----V----LDDSGSGSLSNII 109
Query: 281 SAFDDAIHDGVD-------VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGN 333
+ D D V S+SLG + A A G+ V AAGN
Sbjct: 110 AGMDFVASDRQSRNCPRRTVASMSLGGGY---SAALNQAAA----RLQSSGVFVAVAAGN 162
Query: 334 EGPKPDTVVNL---APWLLTVGASTMDREFTSY 363
+ D P + TVGA+ + +++
Sbjct: 163 DN--RDAANTSPASEPTVCTVGATDSNDVRSTF 193
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 66/253 (26%)
Query: 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIG 189
AW +G G +++ ++D G+ + D F N
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG--------------NYDPGASFDVN----- 69
Query: 190 MRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST--AVGNFVANVSVFGNGYG 247
+ P P T + + HGT A AV N NG
Sbjct: 70 ---------------DQDPDPQP-RYTQMNDNRHGTRCAGEVAAVAN---------NGVC 104
Query: 248 TAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH-DGVDVLSVSLGEPSHKNT 306
G + AR+ + LD +D + A ++ + + + S S G T
Sbjct: 105 GV-GVAYNARIGGVRM--------LDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKT 155
Query: 307 EYFKDAIAIGSFHAMM------HGILVVAAAGNEGPKPDTV----VNLAPWLLTVGASTM 356
+A +F + G + V A+GN G + D+ + + L++ ++T
Sbjct: 156 VDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 215
Query: 357 DREFTSYVTLGDE 369
Y
Sbjct: 216 FGNVPWYSEACSS 228
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 518 IAAYSE------AVAPSKSPSDDRRI----PFNACF----GTSMSTPHISGIAGLLKTLH 563
+ YSE A S ++++I C GTS S P +GI L +
Sbjct: 219 VPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEAN 278
Query: 564 PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
+ + ++ ++ T+ + T+ G K + YG G ++ + +
Sbjct: 279 KNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSH-SYGYGLLDAGAMVA 329
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 3e-09
Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 67/250 (26%)
Query: 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIG 189
W G V+ ++D G+ E++ D + N
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKD--------------NFCAEGSWDFN----- 85
Query: 190 MRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTA 249
+++ P P D HGT A N +
Sbjct: 86 ---------------DNTNLPKP----RLSDDYHGTRCAGEIAA--KKG-----NNFCGV 119
Query: 250 KGGSPRARLASYKSCWNVNGQPLDCR--DSDILSAFDDAIHDGVDVLSVSLGEPSHKNT- 306
G A+++ + L D ++ + D D+ S S G
Sbjct: 120 -GVGYNAKISGIRI--------LSGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHL 169
Query: 307 ----EYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDTVVNLA----PWLLTVGASTMD 357
+ K A+ G G + V A+GN G + D + +T+GA
Sbjct: 170 QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK 229
Query: 358 REFTSYVTLG 367
Y
Sbjct: 230 DLHPPYSEGC 239
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-07
Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 1/183 (0%)
Query: 499 STINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACF-GTSMSTPHISGIAG 557
I+ + P + ++A + + S D + GTS + P +G+
Sbjct: 224 GAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYT 283
Query: 558 LLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPG 617
LL +P+ + ++ + +A + D K YG G ++ + ++
Sbjct: 284 LLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMS 343
Query: 618 LVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFSILDFNYPTIAIPDLNESVTI 677
++ Y+ + +QS + T E S+ D N+ I + +
Sbjct: 344 KTWENVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDT 403
Query: 678 TRR 680
R
Sbjct: 404 EIR 406
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FS+ G DI PG +I++ + S S GTSM+TPH+
Sbjct: 192 FSNYGSVL--------DIFGPGTDILSTWIGGSTRSIS-------------GTSMATPHV 230
Query: 553 SGIAGLLKTLHPDWSPAAIKSAIMTTATT 581
+G+A L TL + A+ I TA
Sbjct: 231 AGLAAYLMTLGKT-TAASACRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 62/274 (22%), Positives = 82/274 (29%), Gaps = 102/274 (37%)
Query: 109 VQTTRSWDFLGLEKDNVISQNSAWNKGRF-----GEDVIIGVIDSGVWPESKSFSDEGMG 163
QT W GL + IS S + G+ + VID+G+
Sbjct: 2 AQTNAPW---GLAR---ISSTSPGTSTYYYDESAGQGSCVYVIDTGI------------- 42
Query: 164 PVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGH 223
+H F+ RAQ Y RD +GH
Sbjct: 43 -----------EASHPEFE------------------GRAQMVKTYYYSS----RDGNGH 69
Query: 224 GTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCR----DSDI 279
GTH A T YG AK +L K V LD S I
Sbjct: 70 GTHCAGTVG----------SRTYGVAKK----TQLFGVK----V----LDDNGSGQYSTI 107
Query: 280 LSAFDDAIHDGVD-------VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
++ D D + V S+SLG + A A G++V AAG
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGGGY---SSSVNSAAA----RLQSSGVMVAVAAG 160
Query: 333 NEGPKPDTVVNL---APWLLTVGASTMDREFTSY 363
N D P + TVGAS +S+
Sbjct: 161 NNN--ADARNYSPASEPSVCTVGASDRYDRRSSF 192
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 8e-07
Identities = 81/579 (13%), Positives = 158/579 (27%), Gaps = 195/579 (33%)
Query: 265 WNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS---------------LGEPSHKNTEYF 309
+ +D ILS F+DA D D V + +
Sbjct: 9 FETGEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 310 KDAIAIGSFHAMMHGIL------VVAAAGNEGPKPDTVVNLAPWLLT------VGASTMD 357
+ L +V E + + +L++ S M
Sbjct: 67 ------------LFWTLLSKQEEMVQKFVEEVLRINY-----KFLMSPIKTEQRQPSMMT 109
Query: 358 REFTSYV--TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLC-MNHTHG 414
R + D Q+F + +++ L A+ + +L+ + G
Sbjct: 110 RMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLR---QALLELRPAKNVLIDGVL---G 160
Query: 415 IDKSQLAAQAGAAGLILVNP-------------------KQLENESLPLPYHLPTSLVEF 455
K+ +A + + + L+ L Y + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LLYQIDPNWTSR 216
Query: 456 DDAQSIIAYN-NSIKNPVAS----------------VSDVKT--EFN--------TKPSP 488
D S I +SI+ + V + K FN T+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 489 QMTFFSSRGPSTINPNIIKPDITAP-GVEIIAAYSEAVAPSKSPSDDRRI-PFNACFGTS 546
F S+ + I+ + +T ++ Y + P P + P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPR------- 328
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITD-----YDGLKATPF 601
+S IA ++ T H + +T + L+ P
Sbjct: 329 ----RLSIIAESIRD-GLA------------TWDNWKHVNCDKLTTIIESSLNVLE--PA 369
Query: 602 E----YGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHSCPKSFS 657
E + V P SA P ++ L + + ++N ++H S
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIKSDV----MVVVN-----KLHK--YSLV 417
Query: 658 ILDFNYPTIAIPDLNESVTITRRVKNVGT-HNSSYEANVEGVDGVSVVVEPNNLSFTEYG 716
TI+IP + + + +++N H S +V+ Y
Sbjct: 418 EKQPKESTISIPSI--YLELKVKLENEYALHRS--------------IVD-------HYN 454
Query: 717 EERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSDGLHH 755
+TF + + P ++Y + + G HH
Sbjct: 455 IPKTF------DSDDLIPPYLDQYFYSHI------G-HH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 92/714 (12%), Positives = 185/714 (25%), Gaps = 248/714 (34%)
Query: 84 LEEEHAQQLAKHPEVLSIFL-------------DEGRKVQTTRSWDFLGLEKDNVISQNS 130
++ E + ++ ++LS+F D + + + E D++I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-------EIDHIIMSKD 59
Query: 131 AWNKGRFGEDVIIGVIDSGVWPES--KSFSDEGMGPVPLRWRGICQNDTHYGF------- 181
A + + + S E + F +E + +Y F
Sbjct: 60 AVSGTLR----LFWTLLSK--QEEMVQKFVEEVL-------------RINYKFLMSPIKT 100
Query: 182 QCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNF--VANV 239
+ + + R Y + + R N + +++ +R A+ NV
Sbjct: 101 EQRQPSMMTRMYIE---QRDRLYNDN-QVFAKYNVSR---LQPYLKLRQALLELRPAKNV 153
Query: 240 SVFG-NGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH---------- 288
+ G G G K+ ++ C + D I
Sbjct: 154 LIDGVLGSG--------------KTWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 289 ----------------DGVDVLSVSLGEPSHKNTEY-----------FKDAIAI------ 315
+ S ++ +++ + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 316 -GSFHAMMHG--ILV------VAAAGNEGPKPDTVVNLAPWLLTVGASTMDRE----FTS 362
+++A IL+ V + ++ LT E
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLK 309
Query: 363 YVTLGDEQIFKEIMQG-PLTQHSMIG-NLECNPGAIDP-KKINGKILLCMNHTHGIDKSQ 419
Y+ + + +E++ P S+I ++ D K +N C T I+ S
Sbjct: 310 YLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVN-----CDKLTTIIESS- 362
Query: 420 LAAQAGAAGLILVNPKQLE---------NESLPLPYHLPTSL---VEFDDAQSIIAYNNS 467
L P + S +P L + + V D ++
Sbjct: 363 LNVL---------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV----- 408
Query: 468 IKNPVASVSDVKTEFNTKPSPQMTF------FSSRGPSTINPNIIKPDITAPGVEIIAAY 521
N + S V+ K + T + + + I+ Y
Sbjct: 409 --NKLHKYSLVE-----KQPKESTISIPSIYLELKVKLENEYALHR--------SIVDHY 453
Query: 522 SEAVAPSKSPSDDRRIP-----FNACFGTSMSTPHISGIAGLLKTLHPD--WSPAAIKSA 574
+ P SDD P F + G + L + + D + I+
Sbjct: 454 N---IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-- 508
Query: 575 IMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYIC-- 632
+T I + + L FY YIC
Sbjct: 509 ----HDSTAWNASGSILN-------------------------TLQQLKFYK--PYICDN 537
Query: 633 SRGYNQ---SIINNFTTPEIHS-CPKSFSILD--FNYPTIAIPDLNESVTITRR 680
Y + +I++ E + C K +L AI E+ +R
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI--FEEAHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.96 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.95 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.77 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.69 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.59 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.54 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.28 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.25 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.19 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 94.68 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.64 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.63 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 88.15 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 87.53 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 86.27 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 83.53 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-119 Score=1044.51 Aligned_cols=609 Identities=36% Similarity=0.625 Sum_probs=548.2
Q ss_pred cCCCccccCCcccccccccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCC-CCcccccccccc
Q 044682 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT-HYGFQCNRKLIG 189 (755)
Q Consensus 111 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~kiig 189 (755)
++++|+|+|++... .+|..+.+|+||+|||||||||++||+|.+.|++|+|.+|+|.|+.+. |+...||+|+++
T Consensus 1 Tt~s~~flgl~~~~-----~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNPSS-----GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCSSS-----SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCCch-----hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 57899999998532 799999999999999999999999999999999999999999999998 999999999999
Q ss_pred eeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCC
Q 044682 190 MRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNG 269 (755)
Q Consensus 190 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~ 269 (755)
+++|.+++.... .+...+..+++|..||||||||||||+.+++.+++|++.+.+.||||+|+|++||+|+..+
T Consensus 76 ~~~f~~~~~~~~------~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g- 148 (649)
T 3i6s_A 76 ANYFNKGILAND------PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG- 148 (649)
T ss_dssp EEECCHHHHHHC------TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE-
T ss_pred eEeccCcccccc------cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC-
Confidence 999998776541 2233456688999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceE
Q 044682 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLL 349 (755)
Q Consensus 270 ~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vi 349 (755)
|..+++++||+||+++|+||||||||... ..+..+++..++++|.++|++||+||||+|+...++.+.+||+|
T Consensus 149 ----~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~---~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vi 221 (649)
T 3i6s_A 149 ----TFTSDLIAAMDQAVADGVDMISISYGYRF---IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWIL 221 (649)
T ss_dssp ----ECHHHHHHHHHHHHHTTCSEEEECCCCCS---CCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSE
T ss_pred ----CCHHHHHHHHHHHHHcCCCEEEeCCccCC---cccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceE
Confidence 89999999999999999999999999874 67788999999999999999999999999999999999999999
Q ss_pred EeccccCCceeEEEEEeCCccEEEEE-ee--------cceeecCCCCCCCCCCCCCCCCCc--cceEEEEecCCc-chhh
Q 044682 350 TVGASTMDREFTSYVTLGDEQIFKEI-MQ--------GPLTQHSMIGNLECNPGAIDPKKI--NGKILLCMNHTH-GIDK 417 (755)
Q Consensus 350 tVgA~~~~~~~~~~~~~g~~~~~~g~-l~--------~plv~~~~~~~~~c~~~~~~~~~~--~gkivl~~~~~~-~~~~ 417 (755)
+|||++.|+.|+..+.++|++++.|+ ++ .||+|.. ....|.+..++..++ +||||+|+|+.+ +.+|
T Consensus 222 tVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~--~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k 299 (649)
T 3i6s_A 222 CVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK--TLSDCSSEELLSQVENPENTIVICDDNGDFSDQM 299 (649)
T ss_dssp EEEEEECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT--TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHH
T ss_pred EEeeeecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc--cccccccccccccccccCCcEEEEeCCCccHHHH
Confidence 99999999999999999999999998 54 1788876 467899988888877 999999999999 9999
Q ss_pred HHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCC
Q 044682 418 SQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG 497 (755)
Q Consensus 418 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 497 (755)
..+++++|+.|+|++|+. .....+.+.+|+++|+..+++.|++|++++.+++++|.+..+..+..+.+.++.|||||
T Consensus 300 ~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrG 376 (649)
T 3i6s_A 300 RIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARG 376 (649)
T ss_dssp HHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCS
T ss_pred HHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCC
Confidence 999999999999999986 45566778999999999999999999999999999999999999888999999999999
Q ss_pred CCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCC-CCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHH
Q 044682 498 PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDD-RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIM 576 (755)
Q Consensus 498 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~ 576 (755)
|+...++++||||+|||++|+++|+....++....+. +...|..+||||||||||||+||||||+||+|+|++||++||
T Consensus 377 P~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLm 456 (649)
T 3i6s_A 377 PSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMM 456 (649)
T ss_dssp SCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 9998889999999999999999999865443333232 346899999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcccCC-CCCCCCCCcCCCCccCccccCCCcccccCCccchhhhhhcCCCCccceecccCCcccc--CC
Q 044682 577 TTATTTDHTGKNPITDY-DGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFTTPEIHS--CP 653 (755)
Q Consensus 577 ~TA~~~~~~~~~~~~~~-~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 653 (755)
+||+++++.+ .++.+. .+.++++++||+|+||+.+|++||||||+..+||+.|||++||++++|+.|+.. ++. |+
T Consensus 457 tTA~~~~~~g-~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~-~~~~~C~ 534 (649)
T 3i6s_A 457 TTADPLDNTR-KPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS-SASHNCS 534 (649)
T ss_dssp HTCBCBCTTS-SBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTT-TSCC-CC
T ss_pred cccccccCCC-CcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecC-CCcCCCC
Confidence 9999999988 888875 466889999999999999999999999999999999999999999999999732 266 98
Q ss_pred CCCCCCCCCCCeEEeec-CCce-----EEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 654 KSFSILDFNYPTIAIPD-LNES-----VTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 654 ~~~~~~~ln~psi~~~~-~~~~-----~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
. ...+||||||++.. +.+. ++|+|||||||+..++|+++++.|.|++|+|+|.+|+|++.+|+++|+|||+.
T Consensus 535 ~--~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~ 612 (649)
T 3i6s_A 535 N--PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRY 612 (649)
T ss_dssp C--CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEE
T ss_pred C--chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEe
Confidence 6 46799999999987 5555 89999999999989999999999999999999999999889999999999998
Q ss_pred ccCCCCCCCCCCeEEEEEEEEC--CCC
Q 044682 728 ERNVEPKPKAEKYIFGKLIWSD--SDG 752 (755)
Q Consensus 728 ~~~~~~~~~~~~~~~g~~~~~~--~~~ 752 (755)
..... +.|+||+|+|+| ++|
T Consensus 613 ----~~~~~-~~~~fg~l~w~~~~~~h 634 (649)
T 3i6s_A 613 ----IGDEG-QSRNVGSITWVEQNGNH 634 (649)
T ss_dssp ----CCC----CCCEEEEEEEETTSCC
T ss_pred ----cccCC-CceEEEEEEEEcCCCCe
Confidence 44445 679999999999 554
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-108 Score=956.60 Aligned_cols=589 Identities=41% Similarity=0.747 Sum_probs=497.2
Q ss_pred cCCCccccCCcccccccccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccce
Q 044682 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGM 190 (755)
Q Consensus 111 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~ 190 (755)
++++|+|+|+++ .+|.+..+|+||+|||||||||++||+|++++++|++.+|+|.|+.+. .+.||+|++|+
T Consensus 1 tt~s~~flGl~~-------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~--~~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFPL-------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN--NFRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCCT-------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSS--SCCCCSSEEEE
T ss_pred CCCChhHcCCCc-------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCC--CcccCcceeee
Confidence 579999999974 688899999999999999999999999999999999999999999887 55799999999
Q ss_pred eeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCC
Q 044682 191 RYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ 270 (755)
Q Consensus 191 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~ 270 (755)
++|..+.... ..+..+++|++||||||||||||+.+++.+.+|++.+.++||||+|+|++||+|++.+
T Consensus 72 ~~~~~~~~~~----------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-- 139 (621)
T 3vta_A 72 RSYHIGRPIS----------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG-- 139 (621)
T ss_dssp EECCCSSSCC----------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE--
T ss_pred eecccCCccC----------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC--
Confidence 9998764322 2245678999999999999999999988888888888999999999999999999876
Q ss_pred CCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEE
Q 044682 271 PLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLT 350 (755)
Q Consensus 271 ~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vit 350 (755)
|..+++++||++|+++|+||||||||+... ..+..+++++++++|.++||+||+||||+|+...++.+.+||+++
T Consensus 140 ---~~~~di~~a~~~a~~~g~dVin~SlG~~~~--~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~ 214 (621)
T 3vta_A 140 ---CSDTDILAAYDDAIADGVDIISLSVGGANP--RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLS 214 (621)
T ss_dssp ---ECHHHHHHHHHHHHHHTCSEEEECCCCCCG--GGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEE
T ss_pred ---CCHHHHHHHHHHHHHhCCCEEEecCCCCCC--CCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCcee
Confidence 889999999999999999999999998753 556788999999999999999999999999999999999999999
Q ss_pred eccccCCceeEEEEEeCCccEEEEE-ee------cceeecCCCC--------CCCCCCCCCCCCCccceEEEEecCCcch
Q 044682 351 VGASTMDREFTSYVTLGDEQIFKEI-MQ------GPLTQHSMIG--------NLECNPGAIDPKKINGKILLCMNHTHGI 415 (755)
Q Consensus 351 VgA~~~~~~~~~~~~~g~~~~~~g~-l~------~plv~~~~~~--------~~~c~~~~~~~~~~~gkivl~~~~~~~~ 415 (755)
|++++.++.|...+.++++..+.+. +. .++++..... ...|.+..+++.+++|||++|+++..
T Consensus 215 v~ast~d~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~-- 292 (621)
T 3vta_A 215 VAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFG-- 292 (621)
T ss_dssp EEEECCSEEEEEEEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCC--
T ss_pred EEEeeccccceeeEEeccCceeeeeecccCCCcccccccccccccccccccccccccccccccccccceEEEEecCCC--
Confidence 9999999999999999999999888 43 1566554432 45699999999999999999987644
Q ss_pred hhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccC
Q 044682 416 DKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSS 495 (755)
Q Consensus 416 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 495 (755)
.+..+....|+.++|++++... ..+.+.+|...++..++..++.|+..+..+.+.+....+. .....+.++.|||
T Consensus 293 ~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSS 367 (621)
T 3vta_A 293 PHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSS 367 (621)
T ss_dssp HHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSC
T ss_pred hhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecC
Confidence 5566777899999999987542 3456789999999999999999999999888888665544 3456789999999
Q ss_pred CCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHH
Q 044682 496 RGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAI 575 (755)
Q Consensus 496 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L 575 (755)
|||+...++++||||+|||++|+|+++...... ...+...|..+||||||||||||+||||||+||+|+|++||++|
T Consensus 368 rGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaL 444 (621)
T 3vta_A 368 RGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSAL 444 (621)
T ss_dssp CCSCTTCTTSCSCCEEEECSSEEEECCSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCCCCCCCeeccccccCCcceEeecCcccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHH
Confidence 999988899999999999999999998754322 12344689999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCcccccCCccchhhhhhcCCCCccceeccc-CCccccCCC
Q 044682 576 MTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSIINNFT-TPEIHSCPK 654 (755)
Q Consensus 576 ~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 654 (755)
|+||++++..+ .++.+++||+|+||+.+|++||||||+..+||+.|||+++|++++++.++ .. ..|+.
T Consensus 445 mtTA~~~~~~~---------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~--~~~~~ 513 (621)
T 3vta_A 445 MTTASPMNARF---------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY--SACTS 513 (621)
T ss_dssp HHTCBCCCTTT---------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------
T ss_pred HhcCCcccccC---------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccc--cccCC
Confidence 99999876554 35678999999999999999999999999999999999999999999997 44 67765
Q ss_pred CC--CCCCCCCCeEEee---cCCceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEecc
Q 044682 655 SF--SILDFNYPTIAIP---DLNESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPER 729 (755)
Q Consensus 655 ~~--~~~~ln~psi~~~---~~~~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 729 (755)
.. ...+||||||++. ++..+++|+|||||||....+|++++++|.|++|+|+|.+|+|++.||+++|+|||+.
T Consensus 514 ~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~-- 591 (621)
T 3vta_A 514 GNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-- 591 (621)
T ss_dssp ----CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE--
T ss_pred CCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe--
Confidence 43 4679999999985 4457899999999999999999999999999999999999999888999999999987
Q ss_pred CCCCCCCCCCeEEEEEEEECCCCC
Q 044682 730 NVEPKPKAEKYIFGKLIWSDSDGL 753 (755)
Q Consensus 730 ~~~~~~~~~~~~~g~~~~~~~~~~ 753 (755)
. .. +.|+||+|+|+|++|.
T Consensus 592 --~--~~-~~~~~g~l~w~d~~h~ 610 (621)
T 3vta_A 592 --S--IK-GFVVSASLVWSDGVHY 610 (621)
T ss_dssp --C--CC-SSEEEEEEEEECSSCC
T ss_pred --c--CC-CceEEEEEEEEcCCEE
Confidence 2 45 7899999999998763
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=743.80 Aligned_cols=524 Identities=23% Similarity=0.294 Sum_probs=407.7
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCC-----------CCcccccccccceeeccchhh
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT-----------HYGFQCNRKLIGMRYYNQGQI 198 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-----------~~~~~~n~kiig~~~~~~~~~ 198 (755)
.+|.++++|+||+|||||||||++||+|.+ +..|++.|.... ..+..||+|++++++|.++
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~-- 79 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD-- 79 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC--
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccccC--
Confidence 899999999999999999999999999985 346766665332 2344799999999998753
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhH
Q 044682 199 EHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278 (755)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~ 278 (755)
. ...|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|++.+. .+..++
T Consensus 80 ---------------~-~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~---~~~~~~ 136 (926)
T 1xf1_A 80 ---------------G-KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL---ADYARN 136 (926)
T ss_dssp ---------------S-CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH---HHHHHH
T ss_pred ---------------C-CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC---CCcHHH
Confidence 1 12288999999999999997554332 245699999999999999987641 145678
Q ss_pred HHHhhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCC-------------CCcccc--
Q 044682 279 ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPK-------------PDTVVN-- 343 (755)
Q Consensus 279 i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~-- 343 (755)
+++||++|+++|+||||||||..... .....+.+..++++|.++||+||+||||+|+. ..++.+
T Consensus 137 i~~Ai~~Ai~~gvdVIn~SlG~~~~~-~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA 215 (926)
T 1xf1_A 137 YAQAIRDAINLGAKVINMSFGNAALA-YANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPA 215 (926)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSCCCT-TCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCT
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCCC-ccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcc
Confidence 99999999999999999999986311 23356678888899999999999999999963 223334
Q ss_pred CCCceEEeccccCCceeEEEEEe-CCccEEEEE-ee----------cceeecCCCCCCCCCCCCCCCCCccceEEEEecC
Q 044682 344 LAPWLLTVGASTMDREFTSYVTL-GDEQIFKEI-MQ----------GPLTQHSMIGNLECNPGAIDPKKINGKILLCMNH 411 (755)
Q Consensus 344 ~~p~vitVgA~~~~~~~~~~~~~-g~~~~~~g~-l~----------~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~ 411 (755)
.+||+|+|||++.++.+...+.+ +++....+. +. .|+++... .|.+..+ .+++||||+|+|+
T Consensus 216 ~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~----g~~~~~~--~~v~Gkivl~~rg 289 (926)
T 1xf1_A 216 AADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR----GTKEDDF--KDVKGKIALIERG 289 (926)
T ss_dssp TTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT----SCSTTTT--TTCTTSEEEEECC
T ss_pred cCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC----CCCccch--hhcCCeEEEEECC
Confidence 37999999999999999988887 555443333 21 16666543 4776655 6999999999999
Q ss_pred Cc-chhhHHHHHHcCccEEEEecCCCCCCCC-CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCc
Q 044682 412 TH-GIDKSQLAAQAGAAGLILVNPKQLENES-LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQ 489 (755)
Q Consensus 412 ~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 489 (755)
.| +.+|..+++++|+.|+|++++....... .....++|++.|+..++..|.. ....++++............+.
T Consensus 290 ~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~ 365 (926)
T 1xf1_A 290 DIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTK 365 (926)
T ss_dssp SSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSB
T ss_pred CCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcce
Confidence 99 9999999999999999999986543221 2346789999999999988774 4445555544443355566789
Q ss_pred cccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHH----hhCCC
Q 044682 490 MTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLK----TLHPD 565 (755)
Q Consensus 490 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~P~ 565 (755)
++.||||||+. ++++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+
T Consensus 366 ~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~ 430 (926)
T 1xf1_A 366 LSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPD 430 (926)
T ss_dssp CCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSS
T ss_pred eccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhccCCC
Confidence 99999999996 899999999999999999976 389999999999999999999996 56999
Q ss_pred CCHHH----HHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCcccccCCccchhhhhhcCCCCccce
Q 044682 566 WSPAA----IKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQSII 641 (755)
Q Consensus 566 ~sp~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~~~~~~~ 641 (755)
|+|+| ||++||+||+++...+ ....+++++||+|+||+.+|+++.+ |||..+++..
T Consensus 431 ~sp~~~~~~Iks~L~~TA~~~~~~~-------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~-- 490 (926)
T 1xf1_A 431 MTPSERLDLAKKVLMSSATALYDED-------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS-- 490 (926)
T ss_dssp SHHHHHHHHHHHHHHHHSBCCEEGG-------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS--
T ss_pred CCHHHHHHHHHHHHHhcCCCcccCC-------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc--
Confidence 99997 9999999998875432 1224568899999999999999855 6787654322
Q ss_pred ecccCCccccCCCCCCCCCCCCCeEEeecCCceEEEEEEEEecCCC--CceEEEEEec--CCceEEEEEceeEEEe----
Q 044682 642 NNFTTPEIHSCPKSFSILDFNYPTIAIPDLNESVTITRRVKNVGTH--NSSYEANVEG--VDGVSVVVEPNNLSFT---- 713 (755)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~ln~psi~~~~~~~~~~~~~tv~nv~~~--~~~y~~~~~~--~~g~~v~v~p~~~~~~---- 713 (755)
+|.+.++..+.+++|||+|+|+. ..+|++++.. |.+..++|+|..|.|.
T Consensus 491 -----------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~ 547 (926)
T 1xf1_A 491 -----------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQK 547 (926)
T ss_dssp -----------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEE
T ss_pred -----------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCe
Confidence 34555555678999999999974 4567777765 6788888888766554
Q ss_pred ---cCCeEEEEEEEEEeccC----CCCCCCCCCeEEEEEEEECCCCCC
Q 044682 714 ---EYGEERTFKVTFTPERN----VEPKPKAEKYIFGKLIWSDSDGLH 754 (755)
Q Consensus 714 ---~~g~~~~~~v~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~ 754 (755)
++||+++|+|||++... ...++. +.|+||+|+|++.++.|
T Consensus 548 vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~-~~~~~G~i~~~~~~~~~ 594 (926)
T 1xf1_A 548 ITIPANSSKQVTVPIDASRFSKDLLAQMKN-GYFLEGFVRFKQDPTKE 594 (926)
T ss_dssp EEECTTEEEEEEEEEECHHHHHHHHHHSTT-CEEEEEEEEEESSTTSC
T ss_pred EEECCCCEEEEEEEEEcCccchhhcccccC-CcEEEEEEEEEeCCCCC
Confidence 45999999999998310 001234 67899999999544433
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-61 Score=546.39 Aligned_cols=368 Identities=32% Similarity=0.456 Sum_probs=288.0
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHH---------
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQL--------- 92 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L--------- 92 (755)
++..|||.|++.... +...++++.+ ..++.++|+ .|+||+++++.+++++|
T Consensus 34 ~~~~~iV~~~~~~~~------------~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~ 93 (539)
T 3afg_A 34 QEVSTIIMFDNQADK------------EKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYF 93 (539)
T ss_dssp CEEEEEEEESSHHHH------------HHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC--
T ss_pred CceEEEEEECCCCCH------------HHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccc
Confidence 345699999974321 2222333332 247889997 79999999999999999
Q ss_pred --hCCCCeEEEEeCcccccccCCCccccCCccc-ccccccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcc
Q 044682 93 --AKHPEVLSIFLDEGRKVQTTRSWDFLGLEKD-NVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRW 169 (755)
Q Consensus 93 --~~~p~V~~V~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w 169 (755)
+++|+|++|++++.+++.... .++... .+...+.+|..+++|+||+|||||||||++||+|.+
T Consensus 94 ~~~~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~---------- 159 (539)
T 3afg_A 94 GNAQLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG---------- 159 (539)
T ss_dssp -CCCCTTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT----------
T ss_pred ccccCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC----------
Confidence 899999999999988764321 111110 011123889999999999999999999999999963
Q ss_pred cceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcce
Q 044682 170 RGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTA 249 (755)
Q Consensus 170 ~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~ 249 (755)
++++.++|.++ ...+.|++||||||||||||+.... .+.+
T Consensus 160 ----------------~i~~~~d~~~~-----------------~~~~~D~~gHGThVAgiiag~~~~~-------~g~~ 199 (539)
T 3afg_A 160 ----------------KVIGWVDFVNG-----------------KTTPYDDNGHGTHVASIAAGTGAAS-------NGKY 199 (539)
T ss_dssp ----------------TEEEEEETTTC-----------------CSSCCBSSSHHHHHHHHHHCCCGGG-------TTTT
T ss_pred ----------------CEeeeEECCCC-----------------CCCCCCCCCCHHHHHHHHhCcCccC-------CCCE
Confidence 35555565532 2356789999999999999985321 2345
Q ss_pred eeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC----CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCc
Q 044682 250 KGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325 (755)
Q Consensus 250 ~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi 325 (755)
.||||+|+|+.+|++++.+ .+..+++++||+||+++ |++|||||||... .....+.+..++.++.++|+
T Consensus 200 ~GvAp~A~l~~~kv~~~~g----~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~---~~~~~~~l~~ai~~a~~~Gv 272 (539)
T 3afg_A 200 KGMAPGAKLVGIKVLNGQG----SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ---SSDGTDSLSQAVNNAWDAGL 272 (539)
T ss_dssp CCSCTTCEEEEEECSCTTS----EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS---CCCSCSHHHHHHHHHHHTTC
T ss_pred EEECCCCEEEEEEeecCCC----CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC---CCccchHHHHHHHHHHhcCC
Confidence 8999999999999998776 47789999999999975 9999999999874 23345678888889999999
Q ss_pred EEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccc
Q 044682 326 LVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKING 403 (755)
Q Consensus 326 ~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~g 403 (755)
+||+||||+|+...++ +...+++|+|||++.+
T Consensus 273 lvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~---------------------------------------------- 306 (539)
T 3afg_A 273 VVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY---------------------------------------------- 306 (539)
T ss_dssp EEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT----------------------------------------------
T ss_pred EEEEECCCCCCCCCcccCCccCCceEEEeeecCC----------------------------------------------
Confidence 9999999999865443 4467899999987642
Q ss_pred eEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecc
Q 044682 404 KILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFN 483 (755)
Q Consensus 404 kivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 483 (755)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC
Q 044682 484 TKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563 (755)
Q Consensus 484 ~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 563 (755)
+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||||||++|||+|++
T Consensus 307 ----~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 376 (539)
T 3afg_A 307 ----DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAH 376 (539)
T ss_dssp ----SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHC
T ss_pred ----cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHC
Confidence 5788999999987 8999999999999999998653210 01112369999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCc
Q 044682 564 PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPG 617 (755)
Q Consensus 564 P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~ 617 (755)
|+|+|++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 377 p~~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 377 PSWTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp TTCCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred CCCCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 99999999999999998765322 24678999999999999954
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=511.55 Aligned_cols=346 Identities=25% Similarity=0.360 Sum_probs=276.6
Q ss_pred CceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEEE
Q 044682 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIF 102 (755)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~ 102 (755)
+.+|||.|++.... .++++. ...++.++|. .|++|+++++++++++|+++|+|++|+
T Consensus 2 ~~~~iV~~~~~~~~---------------~~~~~~-------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~ 58 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN---------------PHEVLG-------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVE 58 (395)
T ss_dssp EEEEEEEECTTTCC---------------HHHHHH-------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEE
T ss_pred cEEEEEEECCCccH---------------HHHHHH-------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEE
Confidence 56899999986432 122332 2357889998 699999999999999999999999999
Q ss_pred eCcccccccCCCc-----------cccCCcccccccccccccCCCCCCc--eEEEEEccCCCCCCcCccCCCCCCCCCcc
Q 044682 103 LDEGRKVQTTRSW-----------DFLGLEKDNVISQNSAWNKGRFGED--VIIGVIDSGVWPESKSFSDEGMGPVPLRW 169 (755)
Q Consensus 103 ~~~~~~~~~~~s~-----------~~~g~~~~~~~~~~~~~~~~~~G~g--V~VgVIDtGid~~Hp~f~~~g~~~~~~~w 169 (755)
+++.+++.....+ ..|++... ..+.+|..+ +|+| |+|||||||||++||+|.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i---~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------- 125 (395)
T 2z2z_A 59 FDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV---KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------- 125 (395)
T ss_dssp ECCEEEECCEECC------CCSCCCCHHHHHT---TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------
T ss_pred EeeeecccCCCCcccccccCccccCCcchhhc---CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------
Confidence 9998876542221 12233222 123789988 9999 99999999999999999742
Q ss_pred cceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcce
Q 044682 170 RGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTA 249 (755)
Q Consensus 170 ~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~ 249 (755)
++..++|..+.... +..++.|..||||||||||+|.. ++ ..+
T Consensus 126 -----------------~~~~~~~~~~~~~~------------~~~~~~d~~gHGT~vAgiia~~~-n~--------~g~ 167 (395)
T 2z2z_A 126 -----------------IAWCVSTLRGKVST------------KLRDCADQNGHGTHVIGTIAALN-ND--------IGV 167 (395)
T ss_dssp -----------------EEEEEECGGGCCBC------------CHHHHBCSSSHHHHHHHHHHCCC-SS--------SSC
T ss_pred -----------------cccCccccCCcccC------------CCCCCCCCCCCHHHHHHHHHeec-CC--------Cce
Confidence 33344444321000 01124578999999999999973 21 124
Q ss_pred eeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC--------------------CCcEEEEcCCCCCCCCCCch
Q 044682 250 KGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD--------------------GVDVLSVSLGEPSHKNTEYF 309 (755)
Q Consensus 250 ~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~ 309 (755)
.||||+|+|+.+|++++.+ .++.+++++||+||+++ +++|||||||....
T Consensus 168 ~GvAp~a~l~~~kv~~~~g----~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~------ 237 (395)
T 2z2z_A 168 VGVAPGVQIYSVRVLDARG----SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD------ 237 (395)
T ss_dssp CCSSTTCEEEEEECSCTTS----EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC------
T ss_pred EEECCCCEEEEEEEecCCC----CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC------
Confidence 8999999999999998776 47789999999999988 99999999998742
Q ss_pred hhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCC
Q 044682 310 KDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNL 389 (755)
Q Consensus 310 ~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~ 389 (755)
...+..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 238 ~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------- 285 (395)
T 2z2z_A 238 DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN-------------------------------- 285 (395)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------------------
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC--------------------------------
Confidence 244566667888999999999999998777777788999999998643
Q ss_pred CCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCC
Q 044682 390 ECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIK 469 (755)
Q Consensus 390 ~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 469 (755)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchh
Q 044682 470 NPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMST 549 (755)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 549 (755)
+.++.||++|| +|+|||++|+|+++. +.|..++||||||
T Consensus 286 ------------------~~~a~fS~~G~----------~v~APG~~i~s~~~~-------------~~y~~~sGTS~Aa 324 (395)
T 2z2z_A 286 ------------------DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMAT 324 (395)
T ss_dssp ------------------SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEEESHHHHH
T ss_pred ------------------CCCCcccCCCC----------CEEeCCCCeeeecCC-------------CceEecCCHHHHH
Confidence 57889999998 679999999999976 3799999999999
Q ss_pred hhHHHHHHHHHhhCC-------------CCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCC
Q 044682 550 PHISGIAGLLKTLHP-------------DWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 550 P~VAG~aALl~q~~P-------------~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 616 (755)
|||||++|||+|++| .|++.+||++|++||+++...+ .+..||+|+||+.+|++.
T Consensus 325 P~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g------------~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG------------WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS------------SBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC------------CCCCccCceeCHHHHHHH
Confidence 999999999999999 9999999999999999876544 467899999999999874
Q ss_pred c
Q 044682 617 G 617 (755)
Q Consensus 617 ~ 617 (755)
+
T Consensus 393 a 393 (395)
T 2z2z_A 393 A 393 (395)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=504.91 Aligned_cols=340 Identities=19% Similarity=0.237 Sum_probs=265.5
Q ss_pred ccEEEEecceeeeEEEEeCHHHHHHHhC-CCCeEEEEeCcccccccCCCc----------cccCCcccccccccccccCC
Q 044682 67 DSISCSYGRHINGFAAILEEEHAQQLAK-HPEVLSIFLDEGRKVQTTRSW----------DFLGLEKDNVISQNSAWNKG 135 (755)
Q Consensus 67 ~~i~~~y~~~~~g~s~~l~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s~----------~~~g~~~~~~~~~~~~~~~~ 135 (755)
.++.+.|. .|++|+++++++++++|++ +|+|++|++++.+++...... ..|++..... .+.+|..+
T Consensus 66 ~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~--~~~~~~~~ 142 (471)
T 3t41_A 66 LNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITN--NGASYDDL 142 (471)
T ss_dssp CEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTT--TTGGGGGC
T ss_pred CEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccC--cHHHHhcc
Confidence 46788886 6999999999999999999 999999999998877543321 1122222211 12689999
Q ss_pred CCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCC
Q 044682 136 RFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHS 215 (755)
Q Consensus 136 ~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (755)
.+|+||+|||||||||++||+|.+. .|.+. ..++....|.... .....+..
T Consensus 143 ~~G~gv~VaViDtGid~~Hp~~~~~-------~~~~~------------~~~~~~~~~~~~~----------~~~~~~~~ 193 (471)
T 3t41_A 143 PKHANTKIAIIDTGVMKNHDDLKNN-------FSTDS------------KNLVPLNGFRGTE----------PEETGDVH 193 (471)
T ss_dssp CSSCCCCEEEEESCCCTTCTTTTTT-------BCTTC------------EECCCTTCGGGCC----------TTCCCCTT
T ss_pred CCCCCcEEEEEeCCCCCCChhHhcC-------cccCC------------cccccCCCccCCC----------cccCCCCC
Confidence 9999999999999999999999863 11110 0111111111110 01112334
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLS 295 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 295 (755)
.+.|..||||||||||+|+. .+.||||+|+|+.+|++++.. +...++++||++|+++|++|||
T Consensus 194 ~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~-----~~~~~i~~ai~~a~~~g~~Vin 256 (471)
T 3t41_A 194 DVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKK-----TELLWVSKAIVQAANDGNQVIN 256 (471)
T ss_dssp CCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSC-----CCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCC-----CcHHHHHHHHHHHHhCCCCEEE
Confidence 67789999999999999863 248999999999999998743 8899999999999999999999
Q ss_pred EcCCCCCCCC----C------CchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc------------------cccCCCc
Q 044682 296 VSLGEPSHKN----T------EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT------------------VVNLAPW 347 (755)
Q Consensus 296 ~SlG~~~~~~----~------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~~p~ 347 (755)
||||...... . ....+.+..++..+.++|++||+||||+|..... .+..+++
T Consensus 257 ~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~ 336 (471)
T 3t41_A 257 ISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDN 336 (471)
T ss_dssp ECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTT
T ss_pred eCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCC
Confidence 9999741000 0 1345677888888999999999999999976542 4557799
Q ss_pred eEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCcc
Q 044682 348 LLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAA 427 (755)
Q Consensus 348 vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~ 427 (755)
+|+|||++.+
T Consensus 337 vitVgA~~~~---------------------------------------------------------------------- 346 (471)
T 3t41_A 337 VVTVGSTDQK---------------------------------------------------------------------- 346 (471)
T ss_dssp EEEEEEECTT----------------------------------------------------------------------
T ss_pred eEEEEeeCCC----------------------------------------------------------------------
Confidence 9999998653
Q ss_pred EEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCC
Q 044682 428 GLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIK 507 (755)
Q Consensus 428 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 507 (755)
+.++.||++||+.
T Consensus 347 ------------------------------------------------------------~~~a~fS~~G~~~------- 359 (471)
T 3t41_A 347 ------------------------------------------------------------SNLSEFSNFGMNY------- 359 (471)
T ss_dssp ------------------------------------------------------------SSBCTTCCBCTTT-------
T ss_pred ------------------------------------------------------------CCCCCccCCCCCC-------
Confidence 5788999999963
Q ss_pred CceeeCCCe----------------------EEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC-
Q 044682 508 PDITAPGVE----------------------IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP- 564 (755)
Q Consensus 508 PDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P- 564 (755)
|||+|||++ |+++++. +.|..++|||||||||||++|||+|++|
T Consensus 360 ~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~ 426 (471)
T 3t41_A 360 TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHL 426 (471)
T ss_dssp CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEecCCCcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccC
Confidence 499999987 8888876 3899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCcc
Q 044682 565 DWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGL 618 (755)
Q Consensus 565 ~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~l 618 (755)
.++|.+||++|++||++... .++..||+|+||+.+|++.+.
T Consensus 427 ~~~~~~v~~~L~~tA~~~~~-------------~~~~~~G~G~vd~~~Al~~a~ 467 (471)
T 3t41_A 427 EKHPDKAIELLYQHGTSKNN-------------KPFSRYGHGELDVYKALNVAN 467 (471)
T ss_dssp TTCHHHHHHHHHHHSBCCSC-------------CCHHHHTTCBBCHHHHTTTTC
T ss_pred CCCHHHHHHHHHHhCCCCCC-------------CCcCccccChhCHHHHHHHHH
Confidence 89999999999999987643 256789999999999999543
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-57 Score=516.59 Aligned_cols=338 Identities=21% Similarity=0.219 Sum_probs=56.8
Q ss_pred eEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEEEeC
Q 044682 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIFLD 104 (755)
Q Consensus 25 ~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~ 104 (755)
+|||+||+.... ...+.+.+.+...+.+. ....++.+.|++.|+||+++++++++++|+++|+|++|+++
T Consensus 77 ~YIV~lk~~~~~---------~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd 146 (692)
T 2p4e_P 77 TYVVVLKEETHL---------SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 146 (692)
T ss_dssp EEEEEECTTCCH---------HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred cEEEEECCCCCH---------HHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEec
Confidence 899999987653 22333444443322111 12357899999999999999999999999999999999999
Q ss_pred cccccccCCCccccCCccccccc-ccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccc
Q 044682 105 EGRKVQTTRSWDFLGLEKDNVIS-QNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQC 183 (755)
Q Consensus 105 ~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~ 183 (755)
+.+... ...| ++....+.. ....|..+.+|+||+|+|||||||++||+|.+.-. |.
T Consensus 147 ~~v~~~-~~pW---gL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~------------- 203 (692)
T 2p4e_P 147 SSVFAQ-SIPW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT------------- 203 (692)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred cccccC-CCCc---chhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------------
Confidence 987642 2234 443322110 11478888999999999999999999999986310 10
Q ss_pred cccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEe
Q 044682 184 NRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263 (755)
Q Consensus 184 n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv 263 (755)
...+..+.+ |. .....+.|.+||||||||||+|+. .||||+|+|+.+|+
T Consensus 204 ------~~~~~~d~d------g~-----~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKV 252 (692)
T 2p4e_P 204 ------DFENVPEED------GT-----RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRV 252 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------ccccccCCC------CC-----cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEe
Confidence 000000000 00 001356789999999999999874 79999999999999
Q ss_pred eecCCCCCCCCChhHHHHhhhhhhhC------CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCC
Q 044682 264 CWNVNGQPLDCRDSDILSAFDDAIHD------GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPK 337 (755)
Q Consensus 264 ~~~~~~~~~~~~~~~i~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~ 337 (755)
+++.+ .++.+++++||+|++++ |++|||||||+.. . ..+..++.++.++|++||+||||+|.+
T Consensus 253 l~~~G----~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~---s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~ 321 (692)
T 2p4e_P 253 LNCQG----KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY---S----RVLNAACQRLARAGVVLVTAAGNFRDD 321 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCC----CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC---c----HHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 98876 47888999999999986 8999999999753 2 345556668889999999999999976
Q ss_pred CCcc-ccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchh
Q 044682 338 PDTV-VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGID 416 (755)
Q Consensus 338 ~~~~-~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~ 416 (755)
.... +...|++|+|||++.+...
T Consensus 322 ~~~~sPA~~~~vItVGA~d~~~~~-------------------------------------------------------- 345 (692)
T 2p4e_P 322 ACLYSPASAPEVITVGATNAQDQP-------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCcccCCCEEEEEEEcCCCCc--------------------------------------------------------
Confidence 5443 5577999999998754210
Q ss_pred hHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCC
Q 044682 417 KSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSR 496 (755)
Q Consensus 417 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 496 (755)
...-+.||+|
T Consensus 346 ----------------------------------------------------------------------a~~ss~fSn~ 355 (692)
T 2p4e_P 346 ----------------------------------------------------------------------VTLGTLGTNF 355 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------cccccccCCC
Confidence 0011238999
Q ss_pred CCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHH
Q 044682 497 GPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIM 576 (755)
Q Consensus 497 Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~ 576 (755)
||. |||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|+|||++|+
T Consensus 356 G~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~ 416 (692)
T 2p4e_P 356 GRC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLI 416 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 984 599999999999997632 2789999999999999999999999999999999999999
Q ss_pred hccccc
Q 044682 577 TTATTT 582 (755)
Q Consensus 577 ~TA~~~ 582 (755)
+||.+.
T Consensus 417 ~tA~~~ 422 (692)
T 2p4e_P 417 HFSAKD 422 (692)
T ss_dssp ------
T ss_pred Hhcccc
Confidence 999764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-54 Score=495.66 Aligned_cols=377 Identities=19% Similarity=0.218 Sum_probs=273.4
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCH----HHHHHHh--CC
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEE----EHAQQLA--KH 95 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~----~~~~~L~--~~ 95 (755)
...+|||.|++... .+++++.+ ..++.+.+. .+++++++++. +.+++|+ ++
T Consensus 30 ~~~~~IV~~k~~~~---------------~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~ 86 (671)
T 1r6v_A 30 TEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALAL 86 (671)
T ss_dssp CTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCC
T ss_pred CCccEEEEECCCcC---------------HHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccC
Confidence 55799999997421 12222222 246777776 78999999864 3356676 48
Q ss_pred CCeEEEEeCcccccccCC---------------------------CccccCCccccccccccc-ccCCCCCCceEEEEEc
Q 044682 96 PEVLSIFLDEGRKVQTTR---------------------------SWDFLGLEKDNVISQNSA-WNKGRFGEDVIIGVID 147 (755)
Q Consensus 96 p~V~~V~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~-~~~~~~G~gV~VgVID 147 (755)
|+|++|+|+..+++.... ....|++... ..+.+ |+. .+|+||+|||||
T Consensus 87 ~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I---~~~~a~w~~-~tG~gV~VAVID 162 (671)
T 1r6v_A 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI---GVTQQLWEE-ASGTNIIVAVVD 162 (671)
T ss_dssp SSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT---TCCHHHHHH-CSCTTCEEEEEE
T ss_pred CCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhcc---CCchhhhhc-cCCCCCEEEEEe
Confidence 999999999776543100 0011222211 12255 888 899999999999
Q ss_pred cCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhh
Q 044682 148 SGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHA 227 (755)
Q Consensus 148 tGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThV 227 (755)
||||++||+|.+. ++..+.+..+.... ...+..|.+||||||
T Consensus 163 TGVd~~HpdL~~~--------------------------~~~g~~~~~~~~~p------------~~~d~~d~~gHGThV 204 (671)
T 1r6v_A 163 TGVDGTHPDLEGQ--------------------------VIAGYRPAFDEELP------------AGTDSSYGGSAGTHV 204 (671)
T ss_dssp SCCBTTSGGGTTT--------------------------BCCEEEGGGTEEEC------------TTCBCCTTCSHHHHH
T ss_pred CCCCCCCcccccc--------------------------EEecccccCCCcCC------------CCCCCccCCCcchhh
Confidence 9999999999853 11111111110000 012344678999999
Q ss_pred hHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecC----CCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCC
Q 044682 228 ASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNV----NGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH 303 (755)
Q Consensus 228 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~----~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 303 (755)
||||||.. ++ ..+.||||+|+|+.+|+++.. +.+ ......+++||+||+++|++|||||||...
T Consensus 205 AGiIAa~~-ng--------~gv~GVAP~A~I~~vkv~~~~~~~~g~g--~~s~~~i~~ai~~A~~~gadVIN~SlG~~~- 272 (671)
T 1r6v_A 205 AGTIAAKK-DG--------KGIVGVAPGAKIMPIVIFDDPALVGGNG--YVGDDYVAAGIIWATDHGAKVMNHSWGGWG- 272 (671)
T ss_dssp HHHHHCCC-SS--------SSCCCSCTTSEEEEEESBCCHHHHCTTS--BCCHHHHHHHHHHHHHTTCSEEEECEEBSC-
T ss_pred hhhhhccC-CC--------CceEEECCCCEEEEEEeccCccccCCCC--ccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-
Confidence 99999974 21 124899999999999999761 211 245677999999999999999999999763
Q ss_pred CCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceee
Q 044682 304 KNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQ 382 (755)
Q Consensus 304 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~ 382 (755)
....+..++..|.++|++||+||||+|... ...+...|++|+|||++.+..
T Consensus 273 -----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~----------------------- 324 (671)
T 1r6v_A 273 -----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----------------------- 324 (671)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----------------------
T ss_pred -----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-----------------------
Confidence 134566777789999999999999999764 445567799999999864310
Q ss_pred cCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHH
Q 044682 383 HSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 383 ~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 462 (755)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC-----CCCCCCCc
Q 044682 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK-----SPSDDRRI 537 (755)
Q Consensus 463 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~ 537 (755)
...++.|||+||.. ||+|||++|+++++....... .......+
T Consensus 325 ------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~ 372 (671)
T 1r6v_A 325 ------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGG 372 (671)
T ss_dssp ------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSC
T ss_pred ------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCC
Confidence 02478999999986 999999999999876321100 00111235
Q ss_pred CCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCc
Q 044682 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPG 617 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~ 617 (755)
.|..++|||||||||||++|||+|++|+++|.+||++|++||+++...+ .+..||+|+||+.+|++..
T Consensus 373 ~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g------------~d~~~G~G~vna~~Al~~~ 440 (671)
T 1r6v_A 373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDTGYGLVKLDAALQGP 440 (671)
T ss_dssp CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTTBTCBCCHHHHHHCC
T ss_pred ceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC------------CCCCcccceeCHHHHhhhh
Confidence 7999999999999999999999999999999999999999999876554 4578999999999999988
Q ss_pred ccccCCccch
Q 044682 618 LVYDLSFYDY 627 (755)
Q Consensus 618 lvyd~~~~~~ 627 (755)
|.++....+|
T Consensus 441 l~~~~~~~~~ 450 (671)
T 1r6v_A 441 LPTQGGVEEF 450 (671)
T ss_dssp CCSSSEEEEE
T ss_pred cCCCCCccce
Confidence 8777655555
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-54 Score=480.63 Aligned_cols=362 Identities=21% Similarity=0.273 Sum_probs=269.5
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+ |+||+|||||||||++||+|.+. ++....+...
T Consensus 15 ~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~~~~~~~------------- 53 (441)
T 1y9z_A 15 VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT------------- 53 (441)
T ss_dssp SSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-------------
T ss_pred hhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccCcccCCC-------------
Confidence 788865 77999999999999999999753 1111111110
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCC--eEEEEEeeecCCCCCCCCChhHHHHhhhhhh
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRA--RLASYKSCWNVNGQPLDCRDSDILSAFDDAI 287 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A--~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~ 287 (755)
.+...+.|..||||||||||+|..++ ..+.||||+| +|+.+|+++..+ .+..+++++||+||+
T Consensus 54 --~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g----~~~~~~~~~ai~~a~ 118 (441)
T 1y9z_A 54 --GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG----WGYSSSLVAAIDTCV 118 (441)
T ss_dssp --CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE----ECCSSCHHHHHHHHH
T ss_pred --CCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCC----CcCHHHHHHHHHHHH
Confidence 01235678899999999999998521 1248999995 999999998776 478889999999999
Q ss_pred hC-CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEe
Q 044682 288 HD-GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 288 ~~-gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
++ |++|||||||.... ...+..++.++.++|++||+||||+|.....++...+++|+|||++.+.....+...
T Consensus 119 ~~~g~~Vin~S~G~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~ 192 (441)
T 1y9z_A 119 NSGGANVVTMSLGGSGS------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (441)
T ss_dssp HTTCCSEEEECCCBSCC------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HhcCCcEEEeCCCCCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccC
Confidence 99 99999999998742 234556667889999999999999998777777788999999999887643322222
Q ss_pred -------------------CCcc----EEEEE-ee--c--c--------eeecCCC-------CCCCCCCC--CCCCCCc
Q 044682 367 -------------------GDEQ----IFKEI-MQ--G--P--------LTQHSMI-------GNLECNPG--AIDPKKI 401 (755)
Q Consensus 367 -------------------g~~~----~~~g~-l~--~--p--------lv~~~~~-------~~~~c~~~--~~~~~~~ 401 (755)
+++. .+.|+ ++ + | +.|.... ....|... .++..++
T Consensus 193 g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~ 272 (441)
T 1y9z_A 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (441)
T ss_dssp CTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCc
Confidence 1221 11111 10 0 0 1111110 12347643 5578899
Q ss_pred cceEEEEecCCc------chhhHHHHHHcCccEEEEecCCCCCCC------CCCCCCcccEEEeeHhhHHHHHHHHhcCC
Q 044682 402 NGKILLCMNHTH------GIDKSQLAAQAGAAGLILVNPKQLENE------SLPLPYHLPTSLVEFDDAQSIIAYNNSIK 469 (755)
Q Consensus 402 ~gkivl~~~~~~------~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 469 (755)
+|||++|+|+.+ +.+|..+++++|+.|+|++++...... .......+|.+.++..+|+.|++|+...
T Consensus 273 ~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~- 351 (441)
T 1y9z_A 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS- 351 (441)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE-
T ss_pred cccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC-
Confidence 999999999763 678999999999999999988542111 1123467999999999999998876321
Q ss_pred CcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchh
Q 044682 470 NPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMST 549 (755)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 549 (755)
. .+ ++... ..|..+|||||||
T Consensus 352 ---~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmAa 372 (441)
T 1y9z_A 352 ---T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMAT 372 (441)
T ss_dssp ---E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHHH
T ss_pred ---c-----------------------------------cc--------ccccC-------------CCceeecccccCC
Confidence 0 01 11111 3899999999999
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCcccccCCccchhh
Q 044682 550 PHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLS 629 (755)
Q Consensus 550 P~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~ 629 (755)
|||||++|||+|+||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ +|+.
T Consensus 373 P~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~-----------~~~~ 429 (441)
T 1y9z_A 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK-----------AYLD 429 (441)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH-----------HHHH
T ss_pred cccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH-----------HHHH
Confidence 9999999999999999999999999999999887655 4578999999999996 4899
Q ss_pred hhhcCCC
Q 044682 630 YICSRGY 636 (755)
Q Consensus 630 ~~~~~~~ 636 (755)
|||+++.
T Consensus 430 ~lc~~~~ 436 (441)
T 1y9z_A 430 ESCTGPT 436 (441)
T ss_dssp HCTTCC-
T ss_pred hhhcCCC
Confidence 9999875
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=466.08 Aligned_cols=307 Identities=22% Similarity=0.255 Sum_probs=200.5
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccc----cceeeccchhhhhhhccC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKL----IGMRYYNQGQIEHARAQN 205 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki----ig~~~~~~~~~~~~~~~g 205 (755)
++|.++..|++|+|||||||||++||+|++....+....|+..++.........+..+ .....+.......
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 96 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAV----- 96 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHH-----
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccc-----
Confidence 8999999999999999999999999999987666666777765543320000000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCC-CCCCChhHHHHhhh
Q 044682 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ-PLDCRDSDILSAFD 284 (755)
Q Consensus 206 ~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~-~~~~~~~~i~~ai~ 284 (755)
..+...+.|.+||||||||||||+.. ..+.||||+|+|+.+|++...... ...+...++++||+
T Consensus 97 -----~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~ 161 (357)
T 4h6x_A 97 -----IPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAID 161 (357)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHH
T ss_pred -----cCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHH
Confidence 01223455778999999999999742 234899999999999997543210 00245667899999
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEE
Q 044682 285 DAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 285 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
+|+++|++|||||||.... .....+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 162 ~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 232 (357)
T 4h6x_A 162 LALELGANIIHCAFCRPTQ--TSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD------- 232 (357)
T ss_dssp HHHHTTCSEEEEC-------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-------
T ss_pred HHHHcCCCEEeeccccCCc--cccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-------
Confidence 9999999999999998642 3345567777888999999999999999998777777788999999998653
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.|||||+.. .||||+|||++|+++++..
T Consensus 233 -------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~~ 264 (357)
T 4h6x_A 233 -------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEILGAQPCT 264 (357)
T ss_dssp -------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEEECCTTC
T ss_pred -------------------------------------------CcccccccCCCCC-----CccceeecCCCeEeccCCC
Confidence 5788999999754 5899999999999998763
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCC
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL----HPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATP 600 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 600 (755)
..|..++|||||||||||++|||+++ +|.|+++|||++|++||++++... ...+
T Consensus 265 ------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~----------~~~~ 322 (357)
T 4h6x_A 265 ------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV----------VEEP 322 (357)
T ss_dssp ------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------------
T ss_pred ------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC----------CCCc
Confidence 36778999999999999999999964 568999999999999999875433 2345
Q ss_pred CcCCCCccCccccCC
Q 044682 601 FEYGAGHVNPNSAMD 615 (755)
Q Consensus 601 ~~~G~G~vd~~~Al~ 615 (755)
.+||+|+||+.+|++
T Consensus 323 ~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 323 ERCLRGFVNIPGAMK 337 (357)
T ss_dssp --CTTCBCCHHHHHH
T ss_pred ccceeEEecHHHHHH
Confidence 789999999999987
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=435.37 Aligned_cols=259 Identities=28% Similarity=0.361 Sum_probs=212.5
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|+.+..|+||+|||||||||++||+|.+. ++..++|.++
T Consensus 21 ~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T 1dbi_A 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhhcCCCCCCEEEEEeCCcCCCChhhccC--------------------------cccceeccCC------------
Confidence 48999998888999999999999999999742 3344444432
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ .+..+++++||+||++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~kv~~~~g----~~~~~~i~~ai~~a~~ 125 (280)
T 1dbi_A 63 -----DYDPMDLNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALDRNG----SGTLSDIADAIIYAAD 125 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCCTTS----CCCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHhCcCCCCC--------cceEeCCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHH
Confidence 12456889999999999999864332 248999999999999998776 4788999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
+|++|||||||.... ...+..++.++.++|++||+||||+|......+...+++|+|||++.+
T Consensus 126 ~g~~Vin~S~G~~~~------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------- 188 (280)
T 1dbi_A 126 SGAEVINLSLGCDCH------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------- 188 (280)
T ss_dssp TTCSEEEECCSSCCC------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------
T ss_pred CCCCEEEeCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-----------
Confidence 999999999998642 245666777889999999999999998766667788999999998643
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
+.++.||++||.. ||+|||++|+++++.
T Consensus 189 ---------------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~----- 216 (280)
T 1dbi_A 189 ---------------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG----- 216 (280)
T ss_dssp ---------------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT-----
T ss_pred ---------------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecCC-----
Confidence 5678999999865 999999999999876
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCcc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 608 (755)
+.|..++|||||||||||++|||++ |.+++.|||++|++||+++... ...||+|+|
T Consensus 217 --------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~--------------~~~~G~G~v 272 (280)
T 1dbi_A 217 --------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT--------------GTYFKYGRI 272 (280)
T ss_dssp --------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB--------------TTTBSSEEC
T ss_pred --------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC--------------CCcccCCEE
Confidence 3799999999999999999999987 8999999999999999887532 257999999
Q ss_pred CccccCC
Q 044682 609 NPNSAMD 615 (755)
Q Consensus 609 d~~~Al~ 615 (755)
|+.+|++
T Consensus 273 n~~~A~~ 279 (280)
T 1dbi_A 273 NSYNAVT 279 (280)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=430.52 Aligned_cols=256 Identities=31% Similarity=0.448 Sum_probs=217.5
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|+|||||| .+||+|+. ...+.|..+
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~----------------------------~~~~~~~~~------------ 52 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLNI----------------------------RGGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCCE----------------------------EEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhcc----------------------------cCCcccCCC------------
Confidence 3899999999999999999999 89999941 222333321
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++++||+|+++
T Consensus 53 -----~~~~~d~~gHGT~vAgiia~~~-~~--------~~~~GvAp~a~l~~~~v~~~~g----~~~~~~~~~ai~~a~~ 114 (269)
T 1gci_A 53 -----EPSTQDGNGHGTHVAGTIAALN-NS--------IGVLGVAPSAELYAVKVLGASG----SGSVSSIAQGLEWAGN 114 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCC-SS--------SBCCCSSTTCEEEEEECBCTTS----CBCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCChHHHHHHHhcCc-CC--------CCcEEeCCCCEEEEEEeECCCC----CcCHHHHHHHHHHHHH
Confidence 1235688999999999999973 11 2248999999999999998766 4778899999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
++++|||||||.... ...+..++.++.++|++||+||||+|......+...+++|+|||++.+
T Consensus 115 ~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------- 177 (269)
T 1gci_A 115 NGMHVANLSLGSPSP------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------- 177 (269)
T ss_dssp TTCSEEEECCCBSSC------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------
T ss_pred CCCeEEEeCCCCCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-----------
Confidence 999999999998742 245666777889999999999999998777777788999999998643
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
+.++.||++||.. ||+|||++|+++++.
T Consensus 178 ---------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~----- 205 (269)
T 1gci_A 178 ---------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG----- 205 (269)
T ss_dssp ---------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-----
T ss_pred ---------------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecCC-----
Confidence 5678999999976 999999999999876
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCcc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 608 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||+|+|
T Consensus 206 --------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------------~~~~~G~G~v 262 (269)
T 1gci_A 206 --------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------STNLYGSGLV 262 (269)
T ss_dssp --------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------CHHHHTTCBC
T ss_pred --------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------------CCCCcccCcc
Confidence 37999999999999999999999999999999999999999998763 3468999999
Q ss_pred CccccCC
Q 044682 609 NPNSAMD 615 (755)
Q Consensus 609 d~~~Al~ 615 (755)
|+.+|++
T Consensus 263 n~~~A~~ 269 (269)
T 1gci_A 263 NAEAATR 269 (269)
T ss_dssp CHHHHTC
T ss_pred CHHHHcC
Confidence 9999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=433.92 Aligned_cols=257 Identities=29% Similarity=0.422 Sum_probs=215.6
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|+|||||||++||+|+. +..+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~------------ 53 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVAG------------ 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHcC----------------------------CCCccccCC------------
Confidence 3899999999999999999999999999941 222333321
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..||||||||||+|.. + ...+.||||+|+|+.+|++...+ .+..+++++||+|+++
T Consensus 54 -----~~~~~d~~gHGT~vAgiia~~~-~--------~~g~~GvAp~a~l~~~~v~~~~g----~~~~~~i~~ai~~a~~ 115 (274)
T 1r0r_E 54 -----EAYNTDGNGHGTHVAGTVAALD-N--------TTGVLGVAPSVSLYAVKVLNSSG----SGSYSGIVSGIEWATT 115 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCS-S--------SSBCCCSSTTSEEEEEECSCTTS----EECHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCHHHHHHHHHccC-C--------CCceEEECCCCEEEEEEEECCCC----CccHHHHHHHHHHHHH
Confidence 1135678999999999999973 1 12248999999999999998766 4778899999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC----CccccCCCceEEeccccCCceeEEEE
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP----DTVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
++++|||||||.... ...+..++.++.++|++||+||||+|... ...+...|++|+|||++.+
T Consensus 116 ~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------- 182 (274)
T 1r0r_E 116 NGMDVINMSLGGASG------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------- 182 (274)
T ss_dssp TTCSEEEECEEBSSC------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-------
T ss_pred cCCCEEEeCCCCCCC------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC-------
Confidence 999999999998742 34566777788999999999999999763 2344567899999997643
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++||.+ ||+|||++|+++++.
T Consensus 183 -------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~- 210 (274)
T 1r0r_E 183 -------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYPT- 210 (274)
T ss_dssp -------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcCccCCCCCCc--------eEEeCCCCeEeecCC-
Confidence 5678999999855 999999999999876
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCC
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 604 (755)
+.|..++|||||||||||++|||+|++|.+++.|||++|++||+++. ++..||
T Consensus 211 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---------------~~~~~G 263 (274)
T 1r0r_E 211 ------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG---------------SSFYYG 263 (274)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------------CHHHHT
T ss_pred ------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC---------------CCCCcc
Confidence 37999999999999999999999999999999999999999998763 346899
Q ss_pred CCccCccccCC
Q 044682 605 AGHVNPNSAMD 615 (755)
Q Consensus 605 ~G~vd~~~Al~ 615 (755)
+|+||+.+|++
T Consensus 264 ~G~~~~~~A~~ 274 (274)
T 1r0r_E 264 KGLINVEAAAQ 274 (274)
T ss_dssp TCBCCHHHHTC
T ss_pred cCccCHHHHhC
Confidence 99999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=432.00 Aligned_cols=259 Identities=32% Similarity=0.444 Sum_probs=216.4
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~------------ 53 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----------------------------AGGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECCTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----------------------------cCCccccCC------------
Confidence 3899999999999999999999999999952 122233221
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
+.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|++...+ .+..++++++|+|+++
T Consensus 54 ----~~~~~~d~~gHGT~vAgiia~~~-~~--------~g~~GvAp~a~l~~~kv~~~~g----~~~~~~i~~ai~~a~~ 116 (281)
T 1to2_E 54 ----ETNPFQDNNSHGTHVAGTVAALN-NS--------IGVLGVAPSASLYAVKVLGADG----SGQYSWIINGIEWAIA 116 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCS-SS--------SSBCCSSTTSEEEEEECSCTTS----EECHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCCCcHHHHHHHHhccC-CC--------CcceeeCCCCEEEEEEEeCCCC----CccHHHHHHHHHHHHH
Confidence 11123678999999999999973 11 2248999999999999998765 4678899999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC----CccccCCCceEEeccccCCceeEEEE
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP----DTVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
++++|||||||.... ...+..++..+.++|++||+||||+|... ...+...|++|+|||++.+
T Consensus 117 ~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------- 183 (281)
T 1to2_E 117 NNMDVINMSLGGPSG------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------- 183 (281)
T ss_dssp TTCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-------
T ss_pred CCCcEEEECCcCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC-------
Confidence 999999999998742 34566777788899999999999999763 3345567899999987642
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++||.. ||+|||++|+++++.
T Consensus 184 -------------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~~- 211 (281)
T 1to2_E 184 -------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPG- 211 (281)
T ss_dssp -------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcCCcCCCCCCc--------eEEecCCCeEeecCC-
Confidence 5678999999965 999999999999876
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCC
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 604 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. +++.||
T Consensus 212 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---------------~~~~~G 264 (281)
T 1to2_E 212 ------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG---------------DSFYYG 264 (281)
T ss_dssp ------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS---------------CHHHHT
T ss_pred ------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC---------------CCCCcc
Confidence 37999999999999999999999999999999999999999998763 356899
Q ss_pred CCccCccccCCC
Q 044682 605 AGHVNPNSAMDP 616 (755)
Q Consensus 605 ~G~vd~~~Al~~ 616 (755)
+|+||+.+|+++
T Consensus 265 ~G~v~~~~a~~~ 276 (281)
T 1to2_E 265 KGLINVQAAAQH 276 (281)
T ss_dssp TCBCCHHHHTSS
T ss_pred cceecHHHHhhh
Confidence 999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=427.98 Aligned_cols=257 Identities=28% Similarity=0.418 Sum_probs=218.1
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|+.. +|+||+|||||||||++||+|.+. ++..++|.++
T Consensus 22 ~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------- 61 (279)
T 1thm_A 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------- 61 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT-------------
T ss_pred HHHhcC-CCCCCEEEEEccCCCCCCcchhcC--------------------------ccccccccCC-------------
Confidence 789887 799999999999999999999742 3444444432
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++..+ .++..++++||+||+++
T Consensus 62 ----~~~~~d~~gHGT~vAgiia~~~~n~~--------g~~GvAp~a~l~~~~v~~~~g----~~~~~~~~~ai~~a~~~ 125 (279)
T 1thm_A 62 ----DSTPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSG----SGTWTAVANGITYAADQ 125 (279)
T ss_dssp ----BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCcHHHHHHHHhCccCCCC--------ccEEeCCCCEEEEEEeeCCCC----CccHHHHHHHHHHHHHC
Confidence 12456889999999999999864432 248999999999999998776 47888999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
|++|||||||.... ...+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 126 g~~Vin~S~G~~~~------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 187 (279)
T 1thm_A 126 GAKVISLSLGGTVG------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------ 187 (279)
T ss_dssp TCSEEEECCCBSSC------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------------
T ss_pred CCCEEEEecCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC------------
Confidence 99999999998742 345666777889999999999999998777777788999999998643
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
+.++.||++||.. ||+|||++|+++++.
T Consensus 188 --------------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~------ 215 (279)
T 1thm_A 188 --------------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT------ 215 (279)
T ss_dssp --------------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT------
T ss_pred --------------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCC------
Confidence 5678999999865 999999999999876
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccC
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd 609 (755)
+.|..++|||||||||||++||| ++|.+++.+||++|++||+++...+ ..||+|+||
T Consensus 216 -------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~--------------~~~G~G~vn 272 (279)
T 1thm_A 216 -------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG--------------TYWAKGRVN 272 (279)
T ss_dssp -------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------------TTBSSEECC
T ss_pred -------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------------ccccCCeeC
Confidence 37999999999999999999999 5899999999999999998875433 579999999
Q ss_pred ccccCC
Q 044682 610 PNSAMD 615 (755)
Q Consensus 610 ~~~Al~ 615 (755)
+.+|++
T Consensus 273 ~~~A~~ 278 (279)
T 1thm_A 273 AYKAVQ 278 (279)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=442.36 Aligned_cols=265 Identities=26% Similarity=0.361 Sum_probs=215.8
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|||||||||++||+|.+ ++++.++|..++...
T Consensus 31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~--------------------------~~~~~~~~~~~~~~~-------- 76 (327)
T 2x8j_A 31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAE--------------------------RIIGGVNLTTDYGGD-------- 76 (327)
T ss_dssp HHHHHHHGGGTTCEEEEEESCCCTTCTTTGG--------------------------GEEEEEECSSGGGGC--------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCChhHhh--------------------------cccCCccccCCCCCC--------
Confidence 3899999999999999999999999999974 244555565443211
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++++||+||++
T Consensus 77 -----~~~~~d~~gHGT~VAgiia~~~-~~--------~g~~GvAp~a~l~~~kv~~~~g----~~~~~~i~~ai~~a~~ 138 (327)
T 2x8j_A 77 -----ETNFSDNNGHGTHVAGTVAAAE-TG--------SGVVGVAPKADLFIIKALSGDG----SGEMGWIAKAIRYAVD 138 (327)
T ss_dssp -----TTCCCCSSSHHHHHHHHHHCCC-CS--------SBCCCSSTTCEEEEEECSCTTS----EECHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCchHHHHHHHhccC-CC--------CCcEeeCCCCEEEEEEeECCCC----CcCHHHHHHHHHHHHh
Confidence 1245688999999999999984 21 2248999999999999998766 4778899999999999
Q ss_pred ------CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-----CccccCCCceEEeccccCC
Q 044682 289 ------DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-----DTVVNLAPWLLTVGASTMD 357 (755)
Q Consensus 289 ------~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~ 357 (755)
.+++|||||||.... ...+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 139 ~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~ 212 (327)
T 2x8j_A 139 WRGPKGEQMRIITMSLGGPTD------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD 212 (327)
T ss_dssp CCCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT
T ss_pred hcccccCCceEEEECCCcCCC------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC
Confidence 899999999998741 24566677788899999999999999652 2344567999999998643
Q ss_pred ceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCC
Q 044682 358 REFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQL 437 (755)
Q Consensus 358 ~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 437 (755)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeE
Q 044682 438 ENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEI 517 (755)
Q Consensus 438 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 517 (755)
+.++.||++||.+ ||+|||++|
T Consensus 213 --------------------------------------------------~~~~~fS~~G~~~--------di~APG~~i 234 (327)
T 2x8j_A 213 --------------------------------------------------LRLSDFTNTNEEI--------DIVAPGVGI 234 (327)
T ss_dssp --------------------------------------------------CCBSCC---CCCC--------SEEEECSSE
T ss_pred --------------------------------------------------CCCCCccCCCCCc--------eEecCcCce
Confidence 5678999999854 999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhh-----CCCCCHHHHHHHHHhcccccCCCCCCcccC
Q 044682 518 IAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL-----HPDWSPAAIKSAIMTTATTTDHTGKNPITD 592 (755)
Q Consensus 518 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~ 592 (755)
+++++. +.|..++|||||||||||++|||+|+ +|.+++.+||++|++||+++..
T Consensus 235 ~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-------- 293 (327)
T 2x8j_A 235 KSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-------- 293 (327)
T ss_dssp EEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS--------
T ss_pred EeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC--------
Confidence 999876 37999999999999999999999999 9999999999999999987642
Q ss_pred CCCCCCCCCcCCCCccCccccCCC
Q 044682 593 YDGLKATPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 593 ~~~~~~~~~~~G~G~vd~~~Al~~ 616 (755)
++..||+|+||+.+|++.
T Consensus 294 ------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 294 ------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp ------CHHHHTTCEECTTHHHHH
T ss_pred ------CCCceeeeEECHHHHHHh
Confidence 357899999999999883
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=432.94 Aligned_cols=267 Identities=22% Similarity=0.249 Sum_probs=211.4
Q ss_pred CCCC-CceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCC
Q 044682 135 GRFG-EDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPE 213 (755)
Q Consensus 135 ~~~G-~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~ 213 (755)
.++| +||+|||||||||++||+|.+. ++....+... ..
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~---------------~~ 41 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAP---------------TA 41 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSC---------------CC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCC---------------CC
Confidence 3578 6999999999999999999753 1111111110 01
Q ss_pred CCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcE
Q 044682 214 HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDV 293 (755)
Q Consensus 214 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 293 (755)
.....|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+... .....++++||+||++++++|
T Consensus 42 ~~~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~---~~~~~~i~~ai~~a~~~~~~V 108 (282)
T 3zxy_A 42 ARSDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRR---RITQLDLARGIERAVNAGAHI 108 (282)
T ss_dssp CCTTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSS---CCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccc---cchHHHHHHHHHHhhccCCeE
Confidence 112334678999999999997522 2489999999999999866542 367888999999999999999
Q ss_pred EEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEE
Q 044682 294 LSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFK 373 (755)
Q Consensus 294 In~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~ 373 (755)
||||||.... .......+..++..+.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 109 in~S~G~~~~--~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 170 (282)
T 3zxy_A 109 INISGGELTD--FGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH---------------- 170 (282)
T ss_dssp EEECCCEEES--SSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT----------------
T ss_pred EeccCccccc--cccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC----------------
Confidence 9999997531 2233455667777899999999999999998777777788999999997643
Q ss_pred EEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEe
Q 044682 374 EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLV 453 (755)
Q Consensus 374 g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i 453 (755)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCC
Q 044682 454 EFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSD 533 (755)
Q Consensus 454 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 533 (755)
+.++.||+||+. ..||||+|||++|+++++.
T Consensus 171 ----------------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---------- 201 (282)
T 3zxy_A 171 ----------------------------------GHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---------- 201 (282)
T ss_dssp ----------------------------------SCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT----------
T ss_pred ----------------------------------CccccccCCCCC-----ccccceeccCcceeeecCC----------
Confidence 567889999975 3688999999999999876
Q ss_pred CCCcCCeeeccccchhhhHHHHHHHHHhhC----CCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccC
Q 044682 534 DRRIPFNACFGTSMSTPHISGIAGLLKTLH----PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609 (755)
Q Consensus 534 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd 609 (755)
+.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++... +.....+|+|+||
T Consensus 202 ---~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~----------~~~~~~~G~G~ln 268 (282)
T 3zxy_A 202 ---GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDA----------PEQARRCLAGRLN 268 (282)
T ss_dssp ---SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGGGTTCBCC
T ss_pred ---CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCC----------CCccCceeeeEeC
Confidence 379999999999999999999999875 78999999999999998875432 2345689999999
Q ss_pred ccccCC
Q 044682 610 PNSAMD 615 (755)
Q Consensus 610 ~~~Al~ 615 (755)
+.+|++
T Consensus 269 ~~~A~~ 274 (282)
T 3zxy_A 269 VSGAFT 274 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=436.75 Aligned_cols=272 Identities=25% Similarity=0.312 Sum_probs=219.3
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
++|+.+..++||+|||||||||++||+|.+. .+.+..++..+
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-------------------------~~~~~~~~~~~------------- 53 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGA-------------------------DLTRLPSLVSG------------- 53 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-------------------------EEEECC------------------
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-------------------------cccCCCcccCC-------------
Confidence 8999988789999999999999999999753 11122222221
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
+.....|..||||||||||+|+.. +.+.||||+|+|+.+|++.+... .+...++++||+||+++
T Consensus 54 ---~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~---~~~~~~i~~ai~~a~~~ 117 (306)
T 4h6w_A 54 ---EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESL---KLSQLDLSRAIEQAVNN 117 (306)
T ss_dssp --------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSC---CCCHHHHHHHHHHHHHT
T ss_pred ---CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccc---cchHHHHHHHHHHhhcc
Confidence 112344678999999999999742 23489999999999999876542 36788899999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
+++|||+|||.... .......+..++..+.++|++||++|||+|......+...+++|+|||++..
T Consensus 118 g~~vi~~s~g~~~~--~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------------ 183 (306)
T 4h6w_A 118 GANIINVSAGQLTD--AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------------ 183 (306)
T ss_dssp TCSEEEECCCEEES--SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT------------
T ss_pred cceeeecccccccc--CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC------------
Confidence 99999999997532 2234456777778899999999999999998777777788999999998643
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
+.+++||++|+.. .||||+|||++|+++++.
T Consensus 184 --------------------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------ 214 (306)
T 4h6w_A 184 --------------------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------ 214 (306)
T ss_dssp --------------------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT------
T ss_pred --------------------------------------CCccccccccCCc-----CcceeecCCcCcccccCC------
Confidence 4677899999643 688999999999999876
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCC
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL----HPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGA 605 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 605 (755)
+.|..++|||||||||||++|||+++ +|.++|+|||++|++||++++..+ ......||+
T Consensus 215 -------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~~~~~~~G~ 277 (306)
T 4h6w_A 215 -------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------TDDQSRCLM 277 (306)
T ss_dssp -------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------CSCGGGGTT
T ss_pred -------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------CCCCCCcce
Confidence 38999999999999999999999864 699999999999999999886554 223457999
Q ss_pred CccCccccCC
Q 044682 606 GHVNPNSAMD 615 (755)
Q Consensus 606 G~vd~~~Al~ 615 (755)
|+||+.+|++
T Consensus 278 G~ln~~~Av~ 287 (306)
T 4h6w_A 278 GKLNILDAIE 287 (306)
T ss_dssp CBCCHHHHHH
T ss_pred eecCHHHHHH
Confidence 9999999998
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=425.67 Aligned_cols=281 Identities=26% Similarity=0.357 Sum_probs=221.9
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|||||||||++||+|.+. +...++|......
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~--------------------------~~~~~~~~~~~~~--------- 60 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATTP--------- 60 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSSC---------
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc--------------------------ccccccccCCCCC---------
Confidence 38999999999999999999999999999752 3333444432100
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
+.....|..||||||||||+|.... ....+.||||+|+|+.+|++.+.+ .+..+++++||+|+++
T Consensus 61 ----~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g----~~~~~~~~~ai~~a~~ 125 (310)
T 2ixt_A 61 ----INNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSG----SGYSDDIAAAIRHAAD 125 (310)
T ss_dssp ----EETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTS----CCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCC----CCcHHHHHHHHHHHHH
Confidence 1124568899999999999998521 112358999999999999998776 4788999999999999
Q ss_pred CCC-----cEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC--CccccCCCceEEeccccCCceeE
Q 044682 289 DGV-----DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP--DTVVNLAPWLLTVGASTMDREFT 361 (755)
Q Consensus 289 ~gv-----dVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~--~~~~~~~p~vitVgA~~~~~~~~ 361 (755)
+++ +|||||||.... ...+..++.++.++|++||+||||+|... ...+...|++|+|||++....
T Consensus 126 ~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~-- 197 (310)
T 2ixt_A 126 QATATGTKTIISMSLGSSAN------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ-- 197 (310)
T ss_dssp HHHHHTCCEEEEECCCBSSC------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE--
T ss_pred hhhccCCCeEEEEcCCCCCC------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc--
Confidence 988 999999998742 34566677788999999999999999763 334556799999999763100
Q ss_pred EEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCC
Q 044682 362 SYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENES 441 (755)
Q Consensus 362 ~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 441 (755)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCC--ccccccCCCCCCCC----CCCCCCceeeCCC
Q 044682 442 LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSP--QMTFFSSRGPSTIN----PNIIKPDITAPGV 515 (755)
Q Consensus 442 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp~~~~----~~~~KPDI~APG~ 515 (755)
.+ .++.||++||.... ..+.||||+|||+
T Consensus 198 ---------------------------------------------~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~ 232 (310)
T 2ixt_A 198 ---------------------------------------------NGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGS 232 (310)
T ss_dssp ---------------------------------------------TTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECS
T ss_pred ---------------------------------------------CCCeeeccccCCCCccCCccccccCCCeeEECCCC
Confidence 12 67889999995421 1235999999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCC
Q 044682 516 EIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDG 595 (755)
Q Consensus 516 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~ 595 (755)
+|+++++. +.|..++|||||||||||++|||+|++|.+++.+||++|++||++.+..+ ....
T Consensus 233 ~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~-----~~~a 294 (310)
T 2ixt_A 233 SVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG-----GYGA 294 (310)
T ss_dssp SEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCB-----STTC
T ss_pred CEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCC-----Cccc
Confidence 99999876 37999999999999999999999999999999999999999999876432 1112
Q ss_pred CCCCCCcCCCCccCc
Q 044682 596 LKATPFEYGAGHVNP 610 (755)
Q Consensus 596 ~~~~~~~~G~G~vd~ 610 (755)
...++..+|||++|+
T Consensus 295 ~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 295 AIGDDYASGFGFARV 309 (310)
T ss_dssp CSSSBTTTBTCBCCC
T ss_pred ccCCccccccceeec
Confidence 345778999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=435.11 Aligned_cols=265 Identities=28% Similarity=0.424 Sum_probs=218.6
Q ss_pred cccccCCCCCC--ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCC
Q 044682 129 NSAWNKGRFGE--DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNS 206 (755)
Q Consensus 129 ~~~~~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~ 206 (755)
+.+|+.+ +|+ ||+|||||||||++||+|.+. ++...+|..+....
T Consensus 18 ~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~~~~------ 64 (320)
T 2z30_A 18 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------------------IAWCVSTLRGKVST------ 64 (320)
T ss_dssp GGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG--------------------------EEEEEECGGGCCBC------
T ss_pred HHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc--------------------------cccCccccCCccCC------
Confidence 3899988 999 999999999999999999742 33333443321000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh
Q 044682 207 SFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA 286 (755)
Q Consensus 207 ~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a 286 (755)
+.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++++||+||
T Consensus 65 ------~~~~~~d~~gHGT~vAgiia~~~-n~--------~g~~GvAp~a~l~~~~v~~~~g----~~~~~~i~~ai~~a 125 (320)
T 2z30_A 65 ------KLRDCADQNGHGTHVIGTIAALN-ND--------IGVVGVAPGVQIYSVRVLDARG----SGSYSDIAIGIEQA 125 (320)
T ss_dssp ------CHHHHBCSSSHHHHHHHHHHCCS-SS--------BSCCCSSTTCEEEEEECSCTTS----EEEHHHHHHHHHHH
T ss_pred ------CCCCCCCCCCCHHHHHHHHHccc-CC--------CceEeeCCCCEEEEEEeeCCCC----CccHHHHHHHHHHH
Confidence 01123578999999999999973 11 2248999999999999998766 47788999999999
Q ss_pred hhC--------------------CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCC
Q 044682 287 IHD--------------------GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAP 346 (755)
Q Consensus 287 ~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p 346 (755)
+++ +++|||||||.... ...+..++.++.++|++||+||||+|.....++...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~ 199 (320)
T 2z30_A 126 ILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYP 199 (320)
T ss_dssp HHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTST
T ss_pred HhCcccccccccccccccccccCCceEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCC
Confidence 987 99999999998742 3445566678889999999999999987777777889
Q ss_pred ceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCc
Q 044682 347 WLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGA 426 (755)
Q Consensus 347 ~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga 426 (755)
++|+|||++.+
T Consensus 200 ~vi~Vga~~~~--------------------------------------------------------------------- 210 (320)
T 2z30_A 200 EVIAVGAIDSN--------------------------------------------------------------------- 210 (320)
T ss_dssp TEEEEEEECTT---------------------------------------------------------------------
T ss_pred CeEEEEeeCCC---------------------------------------------------------------------
Confidence 99999998643
Q ss_pred cEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCC
Q 044682 427 AGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNII 506 (755)
Q Consensus 427 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 506 (755)
+.++.||++||
T Consensus 211 -------------------------------------------------------------~~~~~~S~~g~-------- 221 (320)
T 2z30_A 211 -------------------------------------------------------------DNIASFSNRQP-------- 221 (320)
T ss_dssp -------------------------------------------------------------SCBCTTSCSSC--------
T ss_pred -------------------------------------------------------------CCcCcccCCCC--------
Confidence 56789999997
Q ss_pred CCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-------------CCCCHHHHHH
Q 044682 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-------------PDWSPAAIKS 573 (755)
Q Consensus 507 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------P~~sp~~ik~ 573 (755)
+|+|||++|+++++. +.|..++|||||||||||++|||+|++ |.+++.+||+
T Consensus 222 --~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~ 286 (320)
T 2z30_A 222 --EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG 286 (320)
T ss_dssp --SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHH
T ss_pred --CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHH
Confidence 789999999999876 379999999999999999999999999 9999999999
Q ss_pred HHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCC
Q 044682 574 AIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 574 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 616 (755)
+|++||+++...+ .+..||+|+||+.+|++.
T Consensus 287 ~L~~ta~~~~~~g------------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 287 ILHITADDLGPTG------------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHHHSBCCSSSS------------SBTTTBTCBCCHHHHHHH
T ss_pred HHHhhCccCCCCC------------CCCCcCCceeCHHHHHHH
Confidence 9999999875544 467899999999999874
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=436.82 Aligned_cols=270 Identities=20% Similarity=0.149 Sum_probs=216.7
Q ss_pred ccccCCCCCC--ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCC
Q 044682 130 SAWNKGRFGE--DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSS 207 (755)
Q Consensus 130 ~~~~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~ 207 (755)
.+|+. .+|+ ||+||||||||| +||+|.+. ++..++|.++ +.
T Consensus 34 ~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~--------------------------~~~~~~~~~~--------~~- 76 (347)
T 2iy9_A 34 ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS--------------------------EFAKFSFTQD--------GS- 76 (347)
T ss_dssp HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC--------------------------EEEEEECBTT--------CC-
T ss_pred HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC--------------------------cccCCcccCC--------CC-
Confidence 78988 8999 999999999999 99999742 3334444432 00
Q ss_pred CCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh
Q 044682 208 FYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI 287 (755)
Q Consensus 208 ~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~ 287 (755)
......+.|..||||||||||+|+ .| +.||||+|+|+.+|++.+.+ .. ++++||+||+
T Consensus 77 ---~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~-----~~--~~~~ai~~a~ 134 (347)
T 2iy9_A 77 ---PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGV-----QD--SWIRAIESIM 134 (347)
T ss_dssp ---SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBC-----TT--HHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCC-----HH--HHHHHHHHHH
Confidence 001124567889999999999997 12 38999999999999997654 22 9999999999
Q ss_pred hC------CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-------CccccCCC--------
Q 044682 288 HD------GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-------DTVVNLAP-------- 346 (755)
Q Consensus 288 ~~------gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-------~~~~~~~p-------- 346 (755)
++ |++|||||||... .......+..++..+.++|++||+||||+|... ...+...+
T Consensus 135 ~~~~~~~~~~~Vin~S~G~~~---~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~ 211 (347)
T 2iy9_A 135 SNVFLAPGEEKIINISGGQKG---VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211 (347)
T ss_dssp TCTTSCTTEEEEEEESSCBCC---C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHH
T ss_pred hhhhcccCCceEEEeccccCC---CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccc
Confidence 99 9999999999764 223456777788889999999999999999753 34455667
Q ss_pred --ceEEeccccC--CceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHH
Q 044682 347 --WLLTVGASTM--DREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAA 422 (755)
Q Consensus 347 --~vitVgA~~~--~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~ 422 (755)
++|+|||++. +....
T Consensus 212 ~~~vi~Vga~~~~~~g~~~------------------------------------------------------------- 230 (347)
T 2iy9_A 212 QDPVIRVAALAQYRKGETP------------------------------------------------------------- 230 (347)
T ss_dssp TCCEEEEEEECCCCTTSCC-------------------------------------------------------------
T ss_pred cCCEEEEEEcccCCCCcee-------------------------------------------------------------
Confidence 9999999875 32100
Q ss_pred HcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCC
Q 044682 423 QAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTIN 502 (755)
Q Consensus 423 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 502 (755)
...+.++.||++||+
T Consensus 231 --------------------------------------------------------------~~~~~~~~fS~~G~~--- 245 (347)
T 2iy9_A 231 --------------------------------------------------------------VLHGGGITGSRFGNN--- 245 (347)
T ss_dssp --------------------------------------------------------------CBCCCSSSCBCBCTT---
T ss_pred --------------------------------------------------------------cccCCCCCCCCCCCC---
Confidence 001345699999994
Q ss_pred CCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044682 503 PNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582 (755)
Q Consensus 503 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 582 (755)
||||+|||++|+++++. +.|..++|||||||||||++|||+|++|++++.|||++|++||+++
T Consensus 246 ----~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 308 (347)
T 2iy9_A 246 ----WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKY 308 (347)
T ss_dssp ----TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEEC
T ss_pred ----CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 67999999999999976 3799999999999999999999999999999999999999999987
Q ss_pred CCCCCCcccCCCCCCCCCCcCCCCccCccccCCCc
Q 044682 583 DHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPG 617 (755)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~ 617 (755)
...+ ...+|+|+||+.+|++..
T Consensus 309 ~~~~-------------~~~~G~G~ld~~~A~~~~ 330 (347)
T 2iy9_A 309 PSLV-------------DKVTEGRVLNAEKAISMF 330 (347)
T ss_dssp GGGT-------------TTSGGGEECCHHHHHHHH
T ss_pred CCCC-------------CccccCCEecHHHHHHHH
Confidence 6543 368999999999999843
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-49 Score=427.85 Aligned_cols=299 Identities=23% Similarity=0.304 Sum_probs=219.9
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCC-CCcccccccc---cceeeccchhhhhhhcc
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT-HYGFQCNRKL---IGMRYYNQGQIEHARAQ 204 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ki---ig~~~~~~~~~~~~~~~ 204 (755)
+.+|+.+++|+||+||||||||+ +||+|.+.- +.+...... ......+.+. .....+.+.+...
T Consensus 22 ~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---- 89 (340)
T 3lpc_A 22 DKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-------LPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG---- 89 (340)
T ss_dssp HHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-------CCCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS----
T ss_pred HHHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-------ccCccccCCccccccCCCccCCcccccccccccccc----
Confidence 38999999999999999999998 999997531 111110000 0000000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhh
Q 044682 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFD 284 (755)
Q Consensus 205 g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~ 284 (755)
....+.....|..||||||||||+|...++.+ +.||||+|+|+.+|++...+ +...+++++|+
T Consensus 90 ----~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~~~~-----~~~~~~~~ai~ 152 (340)
T 3lpc_A 90 ----GRPDPRKERSDSSWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALGRCG-----GYDSDISDGLY 152 (340)
T ss_dssp ----CTTCGGGSCBCCCCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCBTTB-----CCHHHHHHHHH
T ss_pred ----CCCCcccCCCCCCCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEecCCC-----CcHHHHHHHHH
Confidence 00011224568899999999999998654332 48999999999999998765 78899999999
Q ss_pred hhhh----------CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-ccccCCCceEEecc
Q 044682 285 DAIH----------DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TVVNLAPWLLTVGA 353 (755)
Q Consensus 285 ~a~~----------~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA 353 (755)
||++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||
T Consensus 153 ~a~~~~~~~~~~~~~~~~Vin~S~G~~~-----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga 227 (340)
T 3lpc_A 153 WAAGGRIAGIPENRNPAKVINMSLGSDG-----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGA 227 (340)
T ss_dssp HHHTCCCTTSCCCSSCCSEEEECCCEES-----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEE
T ss_pred HHhcccccccccccCCCeEEEeCcCCCC-----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEec
Confidence 9998 89999999999753 12334566677888999999999999997654 34557799999999
Q ss_pred ccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEec
Q 044682 354 STMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVN 433 (755)
Q Consensus 354 ~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~ 433 (755)
++.+
T Consensus 228 ~~~~---------------------------------------------------------------------------- 231 (340)
T 3lpc_A 228 TTSR---------------------------------------------------------------------------- 231 (340)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 7643
Q ss_pred CCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeC
Q 044682 434 PKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAP 513 (755)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 513 (755)
+.++.||++|| ||||+||
T Consensus 232 ------------------------------------------------------~~~~~~S~~g~--------~~di~Ap 249 (340)
T 3lpc_A 232 ------------------------------------------------------GIRASFSNYGV--------DVDLAAP 249 (340)
T ss_dssp ------------------------------------------------------SSBCTTCCBST--------TCCEEEE
T ss_pred ------------------------------------------------------CCcCCCCCCCC--------CceEEec
Confidence 57789999998 4599999
Q ss_pred CCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhh-C---CCCCHHHHHHHHHhcccccCCCCCCc
Q 044682 514 GVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL-H---PDWSPAAIKSAIMTTATTTDHTGKNP 589 (755)
Q Consensus 514 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~~sp~~ik~~L~~TA~~~~~~~~~~ 589 (755)
|++|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++|++||+++...
T Consensus 250 G~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~~---- 319 (340)
T 3lpc_A 250 GQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR---- 319 (340)
T ss_dssp CSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSSC----
T ss_pred CCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCCC----
Confidence 99999998864321 11235999999999999999999999998 5 9999999999999999886422
Q ss_pred ccCCCCCCCCCCcCCCCccCccccCCCcc
Q 044682 590 ITDYDGLKATPFEYGAGHVNPNSAMDPGL 618 (755)
Q Consensus 590 ~~~~~~~~~~~~~~G~G~vd~~~Al~~~l 618 (755)
++..||+|+||+.+||+..|
T Consensus 320 ---------~~~~~G~G~vd~~~Av~~~l 339 (340)
T 3lpc_A 320 ---------LDRALGSGIVDAEAAVNSVL 339 (340)
T ss_dssp ---------CSSCCCSSBCCHHHHHHHHH
T ss_pred ---------CCCCcccceecHHHHHHHHh
Confidence 35689999999999987543
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-49 Score=440.26 Aligned_cols=294 Identities=27% Similarity=0.345 Sum_probs=222.7
Q ss_pred cccc-CCCCCCceEEEEEccCCCC------CCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhh
Q 044682 130 SAWN-KGRFGEDVIIGVIDSGVWP------ESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHAR 202 (755)
Q Consensus 130 ~~~~-~~~~G~gV~VgVIDtGid~------~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~ 202 (755)
.+|+ .+++|+||+|||||||||+ .||+|.+. ++..+.|.+
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~--------------------------i~~~~~~~~------- 58 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK--------------------------ITALYALGR------- 58 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC--------------------------EEEEEETTT-------
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC--------------------------EeeeccccC-------
Confidence 8897 7999999999999999999 79999742 333333322
Q ss_pred ccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHh
Q 044682 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282 (755)
Q Consensus 203 ~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~a 282 (755)
...+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..+.. .....++.++
T Consensus 59 -----------~~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~--~~~~~~~~~a 114 (434)
T 1wmd_A 59 -----------TNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL--GGLPSNLQTL 114 (434)
T ss_dssp -----------TTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC--TTSCSSHHHH
T ss_pred -----------CCCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCcc--ccccHHHHHH
Confidence 12556889999999999998641 14799999999999999776521 1245789999
Q ss_pred hhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHH-HhcCcEEEEeccCCCCCCCc--cccCCCceEEeccccCCce
Q 044682 283 FDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHA-MMHGILVVAAAGNEGPKPDT--VVNLAPWLLTVGASTMDRE 359 (755)
Q Consensus 283 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~ 359 (755)
|++++++|++|||||||.... ..+ +....++..+ .++|++||+||||+|....+ .+..++++|+|||++..+.
T Consensus 115 i~~a~~~g~~Vin~S~G~~~~--~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~ 190 (434)
T 1wmd_A 115 FSQAYSAGARIHTNSWGAAVN--GAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190 (434)
T ss_dssp HHHHHHTTCSEEEECCCBCCT--TCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCG
T ss_pred HHHHHhcCCeEEEecCCCCcC--CcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCc
Confidence 999999999999999998741 111 2233344344 68999999999999976543 3446799999999875320
Q ss_pred eEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCC
Q 044682 360 FTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLEN 439 (755)
Q Consensus 360 ~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 439 (755)
.. |
T Consensus 191 ~~---------------------------------------------------------------~-------------- 193 (434)
T 1wmd_A 191 SF---------------------------------------------------------------G-------------- 193 (434)
T ss_dssp GG---------------------------------------------------------------C--------------
T ss_pred cc---------------------------------------------------------------C--------------
Confidence 00 0
Q ss_pred CCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEe
Q 044682 440 ESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIA 519 (755)
Q Consensus 440 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 519 (755)
......+.++.|||+||+. ++++||||+|||++|++
T Consensus 194 ------------------------------------------~~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s 229 (434)
T 1wmd_A 194 ------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILS 229 (434)
T ss_dssp ------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEE
T ss_pred ------------------------------------------cccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEe
Confidence 0001136889999999997 89999999999999999
Q ss_pred eecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccccCCCCCCcccCCC
Q 044682 520 AYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDW-----SPAAIKSAIMTTATTTDHTGKNPITDYD 594 (755)
Q Consensus 520 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~-----sp~~ik~~L~~TA~~~~~~~~~~~~~~~ 594 (755)
+++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++...
T Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~--------- 299 (434)
T 1wmd_A 230 ARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG--------- 299 (434)
T ss_dssp ECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC---------
T ss_pred cCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCC---------
Confidence 98642110000 00012479999999999999999999999999876 8999999999999875322
Q ss_pred CCCCCCCcCCCCccCccccCCCcc
Q 044682 595 GLKATPFEYGAGHVNPNSAMDPGL 618 (755)
Q Consensus 595 ~~~~~~~~~G~G~vd~~~Al~~~l 618 (755)
.++..||||++|+.+|++..+
T Consensus 300 ---~~~~~~G~G~vd~~~a~~~~~ 320 (434)
T 1wmd_A 300 ---YPNGNQGWGRVTLDKSLNVAY 320 (434)
T ss_dssp ---SSCTTTTTCBCCHHHHHTCEE
T ss_pred ---CCCccCCcCeEeHHHhcccce
Confidence 367899999999999997653
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=406.58 Aligned_cols=238 Identities=26% Similarity=0.349 Sum_probs=201.8
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|||||||||++||+|.+. ++..++|.++
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------ 60 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR--------------------------SVSGYDFVDN------------ 60 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC--------------------------EEEEEETTTT------------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC--------------------------ccccccccCC------------
Confidence 47899999999999999999999999999742 3333344332
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..||||||||||+|+. .||||+|+|+.+|++++.+ .+..+++++||+|+++
T Consensus 61 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g----~~~~~~~~~ai~~a~~ 117 (284)
T 1sh7_A 61 -----DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSG----SGTTSGVISGVDWVAQ 117 (284)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTS----CBCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCC----CcCHHHHHHHHHHHHh
Confidence 1245688999999999999874 6999999999999998776 4788999999999998
Q ss_pred C--CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-ccccCCCceEEeccccCCceeEEEEE
Q 044682 289 D--GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TVVNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 289 ~--gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
+ +++|||||||... ...+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 118 ~~~~~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------- 182 (284)
T 1sh7_A 118 NASGPSVANMSLGGGQ-------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS-------- 182 (284)
T ss_dssp HCCSSEEEEECCCBSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT--------
T ss_pred CCCCCcEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC--------
Confidence 4 7999999999863 245666677888999999999999997543 345567999999997643
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ------------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~-- 210 (284)
T 1sh7_A 183 ------------------------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYD-- 210 (284)
T ss_dssp ------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTT--
T ss_pred ------------------------------------------CCcCcccCCCCcc--------EEEeccCCeEEecCC--
Confidence 5678999999976 999999999999876
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT 585 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~ 585 (755)
+.|..++|||||||||||++|||+|++|+++++|||++|++||++....
T Consensus 211 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 259 (284)
T 1sh7_A 211 -----------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVS 259 (284)
T ss_dssp -----------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred -----------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCcc
Confidence 3799999999999999999999999999999999999999999886543
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=403.02 Aligned_cols=239 Identities=27% Similarity=0.338 Sum_probs=203.2
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|..+.+|+||+|||||||||++||+|.+. +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------- 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR--------------------------ARVGYDALG------------- 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTS-------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC--------------------------eeccccCCC-------------
Confidence 37899999999999999999999999999742 222223322
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+...+++++++|+++
T Consensus 62 ------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~----~~~~~~~~~ai~~~~~ 117 (276)
T 4dzt_A 62 ------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNG----SGSTSGVIAGVDWVTR 117 (276)
T ss_dssp ------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCC----CcCHHHHHHHHHHHHh
Confidence 245678999999999999874 7999999999999998776 4788999999999998
Q ss_pred C--CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc-ccCCCceEEeccccCCceeEEEEE
Q 044682 289 D--GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV-VNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 289 ~--gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
+ +++|||||||... ...+..++..+.++|+++|+||||+|...... +...+++|+|||++.+
T Consensus 118 ~~~~~~vin~S~g~~~-------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------- 182 (276)
T 4dzt_A 118 NHRRPAVANMSLGGGV-------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS-------- 182 (276)
T ss_dssp HCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------
T ss_pred cCCCCeEEEECCCCCC-------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC--------
Confidence 7 9999999999763 34566677789999999999999999765443 5577899999997643
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.||++||.. ||+|||++|+++++...
T Consensus 183 ------------------------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~ 212 (276)
T 4dzt_A 183 ------------------------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTSD 212 (276)
T ss_dssp ------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTSS
T ss_pred ------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCCC
Confidence 5778999999987 99999999999987642
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG 586 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~ 586 (755)
..|..++|||||||+|||++|||+|++|+++++|||++|++||++....+
T Consensus 213 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~ 262 (276)
T 4dzt_A 213 -----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLSG 262 (276)
T ss_dssp -----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCBS
T ss_pred -----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccCC
Confidence 37899999999999999999999999999999999999999999865433
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=402.08 Aligned_cols=238 Identities=27% Similarity=0.357 Sum_probs=200.6
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|+|||||||++||+|.+. +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~--------------------------~~~~~d~~~~------------ 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR--------------------------ASSGYDFIDN------------ 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTTT------------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc--------------------------cccCeecCCC------------
Confidence 37899999999999999999999999999742 2233344321
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..+++++||+|+++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g----~~~~~~~~~ai~~a~~ 119 (278)
T 2b6n_A 63 -----DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSG----SGSNSGVIAGINWVKN 119 (278)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCC----CccHHHHHHHHHHHHh
Confidence 1245688999999999999873 6999999999999998776 4788999999999997
Q ss_pred --CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeEEEEE
Q 044682 289 --DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 289 --~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
.+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.+
T Consensus 120 ~~~g~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------- 184 (278)
T 2b6n_A 120 NASGPAVANMSLGGGA-------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN-------- 184 (278)
T ss_dssp HCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------
T ss_pred CCCCCeEEEECCCCCc-------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC--------
Confidence 59999999999863 2455666778889999999999999976543 34567999999998643
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.||++||.. ||+|||++|+++++...
T Consensus 185 ------------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~ 214 (278)
T 2b6n_A 185 ------------------------------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN 214 (278)
T ss_dssp ------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTST
T ss_pred ------------------------------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCCC
Confidence 5678999999865 99999999999986532
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTD 583 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~ 583 (755)
..|..++|||||||||||++|||+|++|++++.|||++|++||++..
T Consensus 215 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 215 -----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp -----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 37899999999999999999999999999999999999999998743
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=455.22 Aligned_cols=344 Identities=23% Similarity=0.241 Sum_probs=233.8
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh-----CCCc
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH-----DGVD 292 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~-----~gvd 292 (755)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..... .+...+++++|.+|++ .|++
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~--~~t~s~l~~AI~~Aid~a~~~~gad 335 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGS--METGTALVRAMTKVMELCRDGRRID 335 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSS--CBCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCc--ccChHHHHHHHHHHHHHHhhcCCce
Confidence 478999999999999986 22 234899999999999998765421 1356778888888887 7999
Q ss_pred EEEEcCCCCCCCCCCchhhHHHHHHHHHH-hcCcEEEEeccCCCCCCCcc--cc--CCCceEEeccccCCceeEEEEEeC
Q 044682 293 VLSVSLGEPSHKNTEYFKDAIAIGSFHAM-MHGILVVAAAGNEGPKPDTV--VN--LAPWLLTVGASTMDREFTSYVTLG 367 (755)
Q Consensus 293 VIn~SlG~~~~~~~~~~~~~~~~~~~~a~-~~Gi~vV~AAGN~G~~~~~~--~~--~~p~vitVgA~~~~~~~~~~~~~g 367 (755)
|||||||... .....+.+..++.++. ++|++||+||||+|+...++ +. .++++|+|||++...........
T Consensus 336 VINmS~G~~~---~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~- 411 (1354)
T 3lxu_X 336 VINMSYGEHA---NWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM- 411 (1354)
T ss_dssp EEEECCCCCC---SCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----
T ss_pred EEEcCCccCC---CCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-
Confidence 9999999974 2122345556666665 89999999999999865544 33 26999999998754321100000
Q ss_pred CccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCc
Q 044682 368 DEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYH 447 (755)
Q Consensus 368 ~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~ 447 (755)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCC
Q 044682 448 LPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAP 527 (755)
Q Consensus 448 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 527 (755)
.....+.+++|||+||+. ++++||||+|||++|+++.....
T Consensus 412 -----------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-- 452 (1354)
T 3lxu_X 412 -----------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-- 452 (1354)
T ss_dssp -----------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-------------
T ss_pred -----------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC--
Confidence 000126789999999997 89999999999999999865321
Q ss_pred CCCCCCCCCcCCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcC
Q 044682 528 SKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603 (755)
Q Consensus 528 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 603 (755)
+.|..++|||||||||||++|||++ .+|.+++.+||++|++||++.+.. +++.|
T Consensus 453 ---------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~-------------~~~~~ 510 (1354)
T 3lxu_X 453 ---------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV-------------DPFAQ 510 (1354)
T ss_dssp -------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS-------------CTTTS
T ss_pred ---------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC-------------Ccccc
Confidence 3789999999999999999999986 799999999999999999887543 35789
Q ss_pred CCCccCccccCCCcccccCCccchhhhhhcCCCCcc-ceecccCCccccCCCCCCCCCCCCCeEEeecCCceEEEEEEEE
Q 044682 604 GAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGYNQS-IINNFTTPEIHSCPKSFSILDFNYPTIAIPDLNESVTITRRVK 682 (755)
Q Consensus 604 G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ln~psi~~~~~~~~~~~~~tv~ 682 (755)
|+|+||+.+|++..+.|+....+++.|.|.++.+.. .|.+- .+ .+ ....+++++|+
T Consensus 511 G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR-~~---~~-------------------~~~~~~tv~V~ 567 (1354)
T 3lxu_X 511 GHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLR-QG---VQ-------------------RNSIDYNVYIE 567 (1354)
T ss_dssp SSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEEC-SS---CC-------------------CSCEEEEEEEE
T ss_pred cCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEe-cc---cc-------------------CCceEEEEEEe
Confidence 999999999999999999999999999999885322 11110 10 00 12233333332
Q ss_pred ec----C---C-CCceE--EEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEeccCCCCCCCCCCeEEEEEEEECC
Q 044682 683 NV----G---T-HNSSY--EANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750 (755)
Q Consensus 683 nv----~---~-~~~~y--~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 750 (755)
-+ . . ....| ++.+.... --|. -|..|.+ .++.++|.|.+.+ ... . .+..|++|...|-
T Consensus 568 p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp----~~L-~-~G~h~~~v~~~D~ 635 (1354)
T 3lxu_X 568 PIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDP----TGL-Q-PGVHSAVIRAYDT 635 (1354)
T ss_dssp EEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECG----GGC-C-SEEEEEEEEEEES
T ss_pred eeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECC----CCC-C-CcceeEEEEEEEc
Confidence 11 1 1 11111 22222211 1233 3777777 5778889999998 333 3 4678888876653
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=400.62 Aligned_cols=240 Identities=28% Similarity=0.343 Sum_probs=201.7
Q ss_pred cccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCC
Q 044682 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYP 210 (755)
Q Consensus 131 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~ 210 (755)
.|. ..+|+||+|+|||||||++||+|.+. +...++|.
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~--------------------------~~~~~~~~---------------- 60 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTYY---------------- 60 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEESS----------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc--------------------------cccccCCC----------------
Confidence 454 37899999999999999999999742 22233332
Q ss_pred CCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCC
Q 044682 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG 290 (755)
Q Consensus 211 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~g 290 (755)
..+.|..||||||||||+|+. .||||+|+|+.+|++++.+ .++.+++++||+|+++++
T Consensus 61 ----~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g----~~~~~~~~~ai~~a~~~~ 118 (279)
T 2pwa_A 61 ----YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG----SGQYSTIIAGMDFVASDK 118 (279)
T ss_dssp ----SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHHHG
T ss_pred ----CCCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCC----CcCHHHHHHHHHHHHhcC
Confidence 134578999999999999873 7999999999999998876 478899999999999998
Q ss_pred C-------cEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeEE
Q 044682 291 V-------DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 291 v-------dVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~ 362 (755)
+ +|||||||... ...+..++.++.++|++||+||||+|..... .+...|++|+|||++.+
T Consensus 119 ~~~~~~~~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----- 186 (279)
T 2pwa_A 119 NNRNCPKGVVASLSLGGGY-------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY----- 186 (279)
T ss_dssp GGSCCTTEEEEEECCCEEC-------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----
T ss_pred ccccCCCccEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC-----
Confidence 7 99999999753 2456667778899999999999999976533 45567999999998643
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
+.++.||++||.. ||+|||++|+++++
T Consensus 187 ---------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~ 213 (279)
T 2pwa_A 187 ---------------------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWI 213 (279)
T ss_dssp ---------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEET
T ss_pred ---------------------------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeec
Confidence 5778999999965 99999999999997
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFE 602 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 602 (755)
. +.|..++|||||||||||++|||+|+ |.++|.|||++|++||++... ..
T Consensus 214 ~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~----------------~~ 263 (279)
T 2pwa_A 214 G-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL----------------SN 263 (279)
T ss_dssp T-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC----------------BS
T ss_pred C-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc----------------CC
Confidence 6 37899999999999999999999999 999999999999999987532 24
Q ss_pred CCCCccCc
Q 044682 603 YGAGHVNP 610 (755)
Q Consensus 603 ~G~G~vd~ 610 (755)
+|+|..|+
T Consensus 264 ~~~g~~n~ 271 (279)
T 2pwa_A 264 IPFGTVNL 271 (279)
T ss_dssp CCTTSCCE
T ss_pred CCCCCccE
Confidence 77888876
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-47 Score=426.85 Aligned_cols=296 Identities=16% Similarity=0.185 Sum_probs=219.0
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|+.+++|+||+|||||||||++||+|.+.- .....++|.++...
T Consensus 28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~~~~--------- 74 (471)
T 1p8j_A 28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------------------DPGASFDVNDQDPD--------- 74 (471)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------------------CGGGCEETTTTBSC---------
T ss_pred HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------------------CccCcccccCCCCC---------
Confidence 489999999999999999999999999997520 00112333322100
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
..+...+.|..||||||||||||...++.. +.||||+|+|+.+|+++ +..+++++|++++++
T Consensus 75 --p~~~~~~~d~~gHGT~vAGiiaa~~~n~~g--------~~GvAp~a~i~~~rv~~--------g~~~~~~~ai~~a~~ 136 (471)
T 1p8j_A 75 --PQPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD--------GEVTDAVEARSLGLN 136 (471)
T ss_dssp --CCCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS--------SCCCHHHHHHHHTSC
T ss_pred --CCCccCCCCCCCcHHHHHHHHHeeccCCCC--------CEEECCCCeEEEEEccC--------CchhHHHHHHHhhhc
Confidence 001124568899999999999997644322 38999999999999985 346789999999999
Q ss_pred -CCCcEEEEcCCCCCCCC-CCchhhHHHHHHHHHH-----hcCcEEEEeccCCCCCCCc----cccCCCceEEeccccCC
Q 044682 289 -DGVDVLSVSLGEPSHKN-TEYFKDAIAIGSFHAM-----MHGILVVAAAGNEGPKPDT----VVNLAPWLLTVGASTMD 357 (755)
Q Consensus 289 -~gvdVIn~SlG~~~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~ 357 (755)
++++|||||||...... .......+..++.++. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 137 ~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~ 216 (471)
T 1p8j_A 137 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF 216 (471)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT
T ss_pred cCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC
Confidence 99999999999863100 0011222333344443 3699999999999975332 12345899999998653
Q ss_pred ceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCC
Q 044682 358 REFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQL 437 (755)
Q Consensus 358 ~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 437 (755)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeE
Q 044682 438 ENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEI 517 (755)
Q Consensus 438 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 517 (755)
+.++.||++||.. ....+|...+||.+|
T Consensus 217 --------------------------------------------------g~~a~~S~~g~~~--~~~~~~~~~~~g~~i 244 (471)
T 1p8j_A 217 --------------------------------------------------GNVPWYSEACSST--LATTYSSGNQNEKQI 244 (471)
T ss_dssp --------------------------------------------------SCCCTTCCBCTTC--CEEEECCCSTTSCCE
T ss_pred --------------------------------------------------CCcccccCCCCcc--eEEeCCCCCCCCCCE
Confidence 5678999999987 444556666667899
Q ss_pred EeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCC
Q 044682 518 IAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLK 597 (755)
Q Consensus 518 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 597 (755)
+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++.+... ..+.......
T Consensus 245 ~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~-~~~~~n~~g~ 311 (471)
T 1p8j_A 245 VTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA-DDWATNGVGR 311 (471)
T ss_dssp EEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC-SCCEECTTSC
T ss_pred EEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCC-CCceecCCCc
Confidence 9997642 36899999999999999999999999999999999999999999886544 3333222223
Q ss_pred CCCCcCCCCccCccccCCCcccc
Q 044682 598 ATPFEYGAGHVNPNSAMDPGLVY 620 (755)
Q Consensus 598 ~~~~~~G~G~vd~~~Al~~~lvy 620 (755)
..+..||+|+||+.+|++.+..+
T Consensus 312 ~~~~~~G~G~vda~~Av~~a~~~ 334 (471)
T 1p8j_A 312 KVSHSYGYGLLDAGAMVALAQNW 334 (471)
T ss_dssp EEBTTTBTCBCCHHHHHHHHHTC
T ss_pred ccCCCCCCEEEcHhHHHHHhhcc
Confidence 34678999999999999965543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=421.63 Aligned_cols=288 Identities=18% Similarity=0.199 Sum_probs=217.8
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|..+++|+||+|||||||||++||+|.+.- ...+.++|.++.
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~~----------- 88 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF------------------------CAEGSWDFNDNT----------- 88 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB------------------------CGGGCEETTTTB-----------
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc------------------------cccCcccCCCCC-----------
Confidence 389999999999999999999999999998530 011233443320
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
.+.....|..||||||||||||...++.. +.||||+|+|+.+|+++. .+...++++||+|+++
T Consensus 89 ---~~~~p~~d~~gHGT~vAGiiaa~~~n~~~--------~~GvAp~a~i~~~rv~~~------~~~~~~~~~ai~~a~~ 151 (503)
T 2id4_A 89 ---NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG------DITTEDEAASLIYGLD 151 (503)
T ss_dssp ---SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS------CCCHHHHHHHTTTTTT
T ss_pred ---CCCCCCCCCCChHHHHHHHHHhccCCCCC--------cEEECCCCEEEEEEeeCC------CCChHHHHHHHHhHhh
Confidence 01123357889999999999998644322 379999999999999863 2678899999999999
Q ss_pred CCCcEEEEcCCCCCCCC-CCchhhHHHHHHHHHH-----hcCcEEEEeccCCCCCCCc--cc--cCCCceEEeccccCCc
Q 044682 289 DGVDVLSVSLGEPSHKN-TEYFKDAIAIGSFHAM-----MHGILVVAAAGNEGPKPDT--VV--NLAPWLLTVGASTMDR 358 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~--~~~p~vitVgA~~~~~ 358 (755)
++ +|||||||...... .......+..++.++. .+|++||+||||+|..... .. ..++++|+|||++.+
T Consensus 152 ~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~- 229 (503)
T 2id4_A 152 VN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK- 229 (503)
T ss_dssp TC-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT-
T ss_pred cC-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC-
Confidence 98 99999999763100 1112233445555554 4799999999999965332 22 246789999998653
Q ss_pred eeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCC
Q 044682 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 359 ~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceee----CC
Q 044682 439 NESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITA----PG 514 (755)
Q Consensus 439 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A----PG 514 (755)
+.++.||++||.. |++| ||
T Consensus 230 -------------------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG 252 (503)
T 2id4_A 230 -------------------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSG 252 (503)
T ss_dssp -------------------------------------------------SCCCTTCCCCTTE--------EEEEECSBTT
T ss_pred -------------------------------------------------CCcCCcCCCCCcc--------eEeecCCCCC
Confidence 5678999999987 8888 89
Q ss_pred CeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC-CCCcccCC
Q 044682 515 VEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT-GKNPITDY 593 (755)
Q Consensus 515 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~-~~~~~~~~ 593 (755)
..|+++.... ..|..++|||||||||||++|||+|++|++++.+||++|+.||+++... . ..+...
T Consensus 253 ~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~-~~~~~~ 319 (503)
T 2id4_A 253 EYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNAD-GDWRDS 319 (503)
T ss_dssp BCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGG-GCCEEC
T ss_pred CceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcC-CCceec
Confidence 9999995431 3789999999999999999999999999999999999999999987654 2 222222
Q ss_pred CCCCCCCCcCCCCccCccccCCCcccc
Q 044682 594 DGLKATPFEYGAGHVNPNSAMDPGLVY 620 (755)
Q Consensus 594 ~~~~~~~~~~G~G~vd~~~Al~~~lvy 620 (755)
......+..||+|+||+++|++...-+
T Consensus 320 ~~g~~~~~~~G~G~vda~~Av~~a~~~ 346 (503)
T 2id4_A 320 AMGKKYSHRYGFGKIDAHKLIEMSKTW 346 (503)
T ss_dssp SSSSEEBTTTBTCBCCHHHHHHHHTSC
T ss_pred CCCCccCcccCCcEecHHHHHHHHhcc
Confidence 222334568999999999999965433
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=389.51 Aligned_cols=230 Identities=30% Similarity=0.363 Sum_probs=195.4
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
..|... +|+||+|||||||||++||+|.+. +.....|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~-------------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR--------------------------AKQIKSYAS-------------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEECSS--------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc--------------------------cccccCCCC--------------
Confidence 566666 999999999999999999999753 223333322
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...|..||||||||||+|+. .||||+|+|+.+|+++..+ .+..++++++++|++++
T Consensus 63 ------~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~----~~~~~~~~~ai~~~~~~ 118 (279)
T 3f7m_A 63 ------TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSG----SGSLSNIIAGMDFVASD 118 (279)
T ss_dssp ------SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCC----CcCHHHHHHHHHHHHhc
Confidence 12278999999999999873 7999999999999998776 57889999999999988
Q ss_pred C-------CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc-ccCCCceEEeccccCCceeE
Q 044682 290 G-------VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV-VNLAPWLLTVGASTMDREFT 361 (755)
Q Consensus 290 g-------vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgA~~~~~~~~ 361 (755)
+ ++|||||||... ...+..++..+.++|++||+||||+|...... +...+++|+|||++.+
T Consensus 119 ~~~~~~~~~~Vin~S~g~~~-------~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---- 187 (279)
T 3f7m_A 119 RQSRNCPRRTVASMSLGGGY-------SAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN---- 187 (279)
T ss_dssp GGGSCCTTEEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----
T ss_pred cccccCCCCeEEEeCCCcCc-------cHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC----
Confidence 6 899999999652 35566677788999999999999999765443 5577999999997643
Q ss_pred EEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCC
Q 044682 362 SYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENES 441 (755)
Q Consensus 362 ~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 441 (755)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeee
Q 044682 442 LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAY 521 (755)
Q Consensus 442 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 521 (755)
+.++.||++||.. ||+|||++|++++
T Consensus 188 ----------------------------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~ 213 (279)
T 3f7m_A 188 ----------------------------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTW 213 (279)
T ss_dssp ----------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEC
T ss_pred ----------------------------------------------CCCCCCCCCCCCC--------eEEECCCCeEeec
Confidence 5778999999966 9999999999998
Q ss_pred cCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 044682 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTD 583 (755)
Q Consensus 522 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~ 583 (755)
+. +.|..++|||||||+|||++|||+|++|. ++.+||++|++||++..
T Consensus 214 ~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 214 IG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp GG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred CC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 86 37899999999999999999999999999 99999999999998754
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=413.43 Aligned_cols=279 Identities=20% Similarity=0.199 Sum_probs=200.8
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
..|..+++|+||+|+|||||||++||+|.+.- +.....+..+.+ +
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------------------------~~~~~~~v~~~d------g---- 61 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------------------------MVTDFENVPEED------G---- 61 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE-------------------------EEEEEECCCCCC-----------
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc-------------------------cccCcccccCCC------C----
Confidence 47888999999999999999999999998530 000111110000 0
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
......+.|..||||||||||+|+. .||||+|+|+.+|++++.+ .++.+++++||+|+++.
T Consensus 62 -~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G----~g~~s~ii~ai~~a~~~ 122 (546)
T 2qtw_B 62 -TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG----KGTVSGTLIGLEFIRKS 122 (546)
T ss_dssp -------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----EEEHHHHHHHHHHHHHH
T ss_pred -ccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHHh
Confidence 0001245688999999999999874 6999999999999998766 46788999999999974
Q ss_pred ------CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeEE
Q 044682 290 ------GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 290 ------gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~ 362 (755)
+++|||||||... ...+..++.++.++|++||+||||+|.+... .+...|++|+|||++.+...
T Consensus 123 ~~~~~~g~~VINmSlGg~~-------s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-- 193 (546)
T 2qtw_B 123 QLVQPVGPLVVLLPLAGGY-------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-- 193 (546)
T ss_dssp HHHSCCSCEEEEECEEEEC-------CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB--
T ss_pred hhhccCCCeEEEecCCCCC-------cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc--
Confidence 9999999999652 3456667778899999999999999976533 34567999999998754210
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
...-..||++||. |||+|||++|+++++
T Consensus 194 --------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~ 221 (546)
T 2qtw_B 194 --------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASS 221 (546)
T ss_dssp --------------------------------------------CEETTEECCBSTT--------CCEEEECSSEEEECT
T ss_pred --------------------------------------------ccccCCcCCCCCc--------ceEEecCccEEeecc
Confidence 0001128999984 499999999999987
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCccc------CCC--
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPIT------DYD-- 594 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~------~~~-- 594 (755)
... ..|..++|||||||||||++|||+|++|+++|+|||++|++||.+..... ..+. ..+
T Consensus 222 ~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~-~~~p~~~~~~tpN~l 289 (546)
T 2qtw_B 222 DCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINE-AWFPEDQRVLTPNLV 289 (546)
T ss_dssp TST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCG-GGSCHHHHTTSCCEE
T ss_pred CCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCC-ccCccccCCCCccch
Confidence 632 27899999999999999999999999999999999999999998643221 1010 000
Q ss_pred -CCCCCCCcCCCCc--cCccccCC
Q 044682 595 -GLKATPFEYGAGH--VNPNSAMD 615 (755)
Q Consensus 595 -~~~~~~~~~G~G~--vd~~~Al~ 615 (755)
........+|+|+ .+++.+..
T Consensus 290 ~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 290 AALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CCCCCTTCC--CCCEEEEEECCCC
T ss_pred hccCCcccccCCCcchhchhccCC
Confidence 1122456788888 77777765
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=415.69 Aligned_cols=301 Identities=22% Similarity=0.212 Sum_probs=207.1
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|+++++|+||+|||||||||++||+|.+. ...+.++|.++.
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------------------------~~~~~~~~~~~~----------- 103 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------------------------VRPGSKNVVTGS----------- 103 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------------------------BCSCCBCTTTSS-----------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------------------------cccCcceeecCC-----------
Confidence 37999999999999999999999999999752 111223333221
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhh-hhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAF-DDAI 287 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai-~~a~ 287 (755)
.++....|.+||||||||||||.. ++ .| +.||||+|+|+.+|++++.+ .+..++++.|+ +++.
T Consensus 104 ---~dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~----~~~~~~~~~a~~~~~~ 167 (600)
T 3hjr_A 104 ---DDPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNS----QQLQKDWLYALGDSNA 167 (600)
T ss_dssp ---SCCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTC----CCCHHHHHHHTTSSHH
T ss_pred ---CCCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCC----CccHHHHHHHhhhhhh
Confidence 112234467899999999999863 21 12 38999999999999998776 46677777776 6777
Q ss_pred hCCCcEEEEcCCCCCCC---CCCchhhHHHHHHHH--HHhcCcEEEEeccCCCCCCC----------------------c
Q 044682 288 HDGVDVLSVSLGEPSHK---NTEYFKDAIAIGSFH--AMMHGILVVAAAGNEGPKPD----------------------T 340 (755)
Q Consensus 288 ~~gvdVIn~SlG~~~~~---~~~~~~~~~~~~~~~--a~~~Gi~vV~AAGN~G~~~~----------------------~ 340 (755)
.++++|||+|||..... ........+..++.. ...+|+++|+||||.+.... .
T Consensus 168 ~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d 247 (600)
T 3hjr_A 168 SRDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLD 247 (600)
T ss_dssp HHTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSS
T ss_pred hcCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCccccccc
Confidence 88999999999976211 011122222222222 23689999999999763210 0
Q ss_pred cccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHH
Q 044682 341 VVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQL 420 (755)
Q Consensus 341 ~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ 420 (755)
.....+++|+|||++.
T Consensus 248 ~~~~~~~~IsVgA~~~---------------------------------------------------------------- 263 (600)
T 3hjr_A 248 PSNSNFWNLVVSALNA---------------------------------------------------------------- 263 (600)
T ss_dssp GGGGSSSEEEEEEECT----------------------------------------------------------------
T ss_pred CccccCcceEEeeecC----------------------------------------------------------------
Confidence 0112345566665543
Q ss_pred HHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCC
Q 044682 421 AAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPST 500 (755)
Q Consensus 421 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 500 (755)
.+.++.||++|+..
T Consensus 264 ------------------------------------------------------------------~g~~a~yS~~G~~v 277 (600)
T 3hjr_A 264 ------------------------------------------------------------------DGVRSSYSSVGSNI 277 (600)
T ss_dssp ------------------------------------------------------------------TSSBCTTCCBCTTC
T ss_pred ------------------------------------------------------------------CCCEeecccCCcce
Confidence 26788999999988
Q ss_pred CCCCCCCCceeeCCCeE--------EeeecCCCCCC-------------CCCCCCCCcCCeeeccccchhhhHHHHHHHH
Q 044682 501 INPNIIKPDITAPGVEI--------IAAYSEAVAPS-------------KSPSDDRRIPFNACFGTSMSTPHISGIAGLL 559 (755)
Q Consensus 501 ~~~~~~KPDI~APG~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 559 (755)
+++|||.++ .+..++..... ..........|..++|||||||||||++|||
T Consensus 278 --------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALl 349 (600)
T 3hjr_A 278 --------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALL 349 (600)
T ss_dssp --------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHH
T ss_pred --------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHH
Confidence 999999763 22222211000 0011122346788999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHhcccccCCCCCCccc--------------------CCCCCCCCCCcCCCCccCccccCCCccc
Q 044682 560 KTLHPDWSPAAIKSAIMTTATTTDHTGKNPIT--------------------DYDGLKATPFEYGAGHVNPNSAMDPGLV 619 (755)
Q Consensus 560 ~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~--------------------~~~~~~~~~~~~G~G~vd~~~Al~~~lv 619 (755)
+|+||+||++|||++|++||++++... .|+. ...........||+|+||+.+|++.+..
T Consensus 350 l~a~P~lt~~~v~~~L~~TA~~~d~~~-~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~ 428 (600)
T 3hjr_A 350 MSAYPDLSVRDLRDLLARSATRVDAKH-QPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAAN 428 (600)
T ss_dssp HHHSTTSCHHHHHHHHHHHCBCCSTTC-CCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHhhCccCCCCC-CcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhc
Confidence 999999999999999999999998766 4422 1112222356799999999999986544
Q ss_pred c
Q 044682 620 Y 620 (755)
Q Consensus 620 y 620 (755)
+
T Consensus 429 w 429 (600)
T 3hjr_A 429 H 429 (600)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-26 Score=257.09 Aligned_cols=101 Identities=26% Similarity=0.376 Sum_probs=77.9
Q ss_pred ceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh---CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcC
Q 044682 248 TAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH---DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHG 324 (755)
Q Consensus 248 ~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~---~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~G 324 (755)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||+|||.............+..++..|..+|
T Consensus 273 ~~~gvAp~a~i~~~~~~---------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 343 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP---------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALG 343 (552)
T ss_dssp HHHHHCTTSEEEEEECC---------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred hhhccCCCCeEEEEEcC---------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 35899999999999973 345789999999998 799999999998631001112345666777888999
Q ss_pred cEEEEeccCCCCCC--------CccccCCCceEEeccccCC
Q 044682 325 ILVVAAAGNEGPKP--------DTVVNLAPWLLTVGASTMD 357 (755)
Q Consensus 325 i~vV~AAGN~G~~~--------~~~~~~~p~vitVgA~~~~ 357 (755)
|+||+||||+|... ...+..+|+|++||+++..
T Consensus 344 i~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 344 VTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp CEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred eEEEEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 99999999999653 2344567999999998753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=211.88 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=79.4
Q ss_pred eeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh-CCCcEEEEcCCCCCCC-CCCchhhHHHHHHHHHHhcCcEE
Q 044682 250 KGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH-DGVDVLSVSLGEPSHK-NTEYFKDAIAIGSFHAMMHGILV 327 (755)
Q Consensus 250 ~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~-~~~~~~~~~~~~~~~a~~~Gi~v 327 (755)
..+||+++++.|++.+... +..++++++|+||++ ++++|||+|||..... ......+.+..++..|..+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~~-----~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitv 164 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA-----SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTF 164 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS-----STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEE
T ss_pred hhcCCCCcEEEEEeCCCCC-----cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEE
Confidence 3468999999999986543 677899999999998 8999999999976210 00112345677777888999999
Q ss_pred EEeccCCCCCCC-------------ccccCCCceEEeccccCC
Q 044682 328 VAAAGNEGPKPD-------------TVVNLAPWLLTVGASTMD 357 (755)
Q Consensus 328 V~AAGN~G~~~~-------------~~~~~~p~vitVgA~~~~ 357 (755)
|+||||+|...+ ..+...|+|++||+++..
T Consensus 165 v~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 165 SVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp EEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred EEEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999999997542 233467999999998753
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-10 Score=99.30 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEE
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSI 101 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V 101 (755)
..++|||+|++.... .....|++|+.+++++ +....++.++|++.|+||+++|+++++++|+++|+|.+|
T Consensus 36 ip~~YIV~lk~~~~~---------~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~V 105 (114)
T 2w2n_P 36 LPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105 (114)
T ss_dssp EEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCcEEEEECCCCCH---------HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEE
Confidence 457899999986642 4455899999988764 335578999999999999999999999999999999999
Q ss_pred EeCccccc
Q 044682 102 FLDEGRKV 109 (755)
Q Consensus 102 ~~~~~~~~ 109 (755)
++|+.++.
T Consensus 106 E~D~~v~~ 113 (114)
T 2w2n_P 106 EEDSSVFA 113 (114)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99988754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-09 Score=120.31 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=63.4
Q ss_pred eeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh--hCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEE
Q 044682 250 KGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI--HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILV 327 (755)
Q Consensus 250 ~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~--~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~v 327 (755)
.++++...++.|...... .....++..+++.. .+-++|||+|||.........+...+...+..+..+||.|
T Consensus 262 ~a~~~~i~~~~~~~~g~~------~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv 335 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH------EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTL 335 (544)
T ss_dssp HHHSTTSEEEEECCCSCC------TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hccCCCceEEEEecCCcc------cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 445556666555432111 12233444444333 3568999999998732112223345566667788999999
Q ss_pred EEeccCCCCCCC----------ccccCCCceEEeccccC
Q 044682 328 VAAAGNEGPKPD----------TVVNLAPWLLTVGASTM 356 (755)
Q Consensus 328 V~AAGN~G~~~~----------~~~~~~p~vitVgA~~~ 356 (755)
++|+||+|.... ..+...|||++||+++.
T Consensus 336 ~~ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 336 LFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp EEECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred EEecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999999996431 34457799999999864
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=83.24 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEE
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSI 101 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V 101 (755)
..++|||.|++.... .. .+..++.. ...++.++|++ |+||+++++++++++|+++|+|.+|
T Consensus 7 i~~~YIV~~k~~~~~--------~~---~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~V 67 (80)
T 3cnq_P 7 GEKKYIVGFKQGFKS--------CA---KKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYV 67 (80)
T ss_dssp -CCEEEEEECTTCCS--------HH---HHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEE
T ss_pred CCCCEEEEECCCCCh--------HH---HHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEE
Confidence 357899999987653 11 12233222 23589999998 9999999999999999999999999
Q ss_pred EeCcccccccCC
Q 044682 102 FLDEGRKVQTTR 113 (755)
Q Consensus 102 ~~~~~~~~~~~~ 113 (755)
++++.++++++.
T Consensus 68 e~D~~v~~~tt~ 79 (80)
T 3cnq_P 68 EEDKLYRALSAT 79 (80)
T ss_dssp EECCEEEECCC-
T ss_pred EeCcEEEEeeec
Confidence 999999887664
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=91.47 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=79.0
Q ss_pred ceeecCC-CCCCCCCCCCCCCCC-------ccceEEEEecCC-c-chhhHHHHHHcCccEEEEecCCCCCCCCC----CC
Q 044682 379 PLTQHSM-IGNLECNPGAIDPKK-------INGKILLCMNHT-H-GIDKSQLAAQAGAAGLILVNPKQLENESL----PL 444 (755)
Q Consensus 379 plv~~~~-~~~~~c~~~~~~~~~-------~~gkivl~~~~~-~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~ 444 (755)
.+++... .....|.+....... .++||+|++||. | |.+|..+++++||.++|+||+...+.... ..
T Consensus 73 ~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~ 152 (194)
T 3icu_A 73 VLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG 152 (194)
T ss_dssp EEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT
T ss_pred EEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC
Confidence 5666543 356789987653222 478999999999 9 99999999999999999999853222111 12
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecce
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVK 479 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 479 (755)
...||+++|+..+|+.|++++..+..++++|....
T Consensus 153 ~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 153 AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 34699999999999999999999999888887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-08 Score=87.80 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=60.3
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEE
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSI 101 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V 101 (755)
-.++|||.||+.... .....|.+++..+..+ .....++.++|++.|+||+++++++++++|+++|+|.+|
T Consensus 46 Ip~~YIV~~K~~~~~---------~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~V 115 (124)
T 2qtw_A 46 LPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115 (124)
T ss_dssp EEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCCEEEEECCCCCH---------HHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEE
Confidence 347899999987653 3344566666554321 113458999999999999999999999999999999999
Q ss_pred EeCccccc
Q 044682 102 FLDEGRKV 109 (755)
Q Consensus 102 ~~~~~~~~ 109 (755)
++++.++.
T Consensus 116 E~D~~v~a 123 (124)
T 2qtw_A 116 EEDSSVFA 123 (124)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99987753
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=76.90 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=58.1
Q ss_pred ceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEec-ceeeeEEEEeCHHHHHHHhCC--CCeEE
Q 044682 24 KSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYG-RHINGFAAILEEEHAQQLAKH--PEVLS 100 (755)
Q Consensus 24 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~~g~s~~l~~~~~~~L~~~--p~V~~ 100 (755)
..|||.|++.... ...+.|.+++...- .++.+.|+ ..|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~~---------~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVSE---------DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCCH---------HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCCH---------HHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 6899999987653 45567777777653 36789994 799999999999999999999 89999
Q ss_pred EEeCccccc
Q 044682 101 IFLDEGRKV 109 (755)
Q Consensus 101 V~~~~~~~~ 109 (755)
||+|+.++.
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999987753
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00043 Score=54.91 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=40.4
Q ss_pred ccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEEEeCcccc
Q 044682 63 KKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGRK 108 (755)
Q Consensus 63 ~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 108 (755)
+....++.++|. .+++++++|+++.++.|+++|+|.+|++|...+
T Consensus 19 ~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 19 LGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 345678999998 999999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.016 Score=63.78 Aligned_cols=69 Identities=22% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC--CC-CCCCcccEEEeeHhhHHHHHHHHh
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE--SL-PLPYHLPTSLVEFDDAQSIIAYNN 466 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 466 (755)
..+++|||||++++.| +.+|..+++++||.|+|++++...... +. .....+|.+.|+..+++.|.+++.
T Consensus 110 ~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3489999999999999 999999999999999999998632111 11 134679999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.077 Score=58.65 Aligned_cols=81 Identities=22% Similarity=0.150 Sum_probs=59.9
Q ss_pred CCCccceEEEEecCCcc----------hhh----HHHHHHcCccEEEEecCCCCCCC--------CCCCCCcccEEEeeH
Q 044682 398 PKKINGKILLCMNHTHG----------IDK----SQLAAQAGAAGLILVNPKQLENE--------SLPLPYHLPTSLVEF 455 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~~----------~~~----~~~~~~~Ga~g~i~~~~~~~~~~--------~~~~~~~~p~~~i~~ 455 (755)
..+++|||||+.++.|. ..| ..++.++||.|+|++++...... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 46899999999998761 233 35689999999999997442211 111235799999999
Q ss_pred hhHHHHHHHHhcCCCcEEEEecc
Q 044682 456 DDAQSIIAYNNSIKNPVASVSDV 478 (755)
Q Consensus 456 ~~g~~l~~~~~~~~~~~~~i~~~ 478 (755)
.+++.|...+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998876666666543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.048 Score=62.82 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCC------------------CCCCC----------------
Q 044682 399 KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLE------------------NESLP---------------- 443 (755)
Q Consensus 399 ~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~------------------~~~~~---------------- 443 (755)
-+++|||||++++.| +.+|..+++++||.|+|++++.... .+...
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 479999999999999 9999999999999999999975321 00000
Q ss_pred CCCcccEEEeeHhhHHHHHHHHh
Q 044682 444 LPYHLPTSLVEFDDAQSIIAYNN 466 (755)
Q Consensus 444 ~~~~~p~~~i~~~~g~~l~~~~~ 466 (755)
....||+..|+..+++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 02368999999999999987654
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.64 E-value=0.033 Score=64.87 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC----C---------------------------CCCCC--
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL----E---------------------------NESLP-- 443 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~----~---------------------------~~~~~-- 443 (755)
..+++|||+|+++|.| +.+|..+++++||.|+|+|++... + +++.+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 4579999999999999 999999999999999999986320 0 00000
Q ss_pred ---------------CCCcccEEEeeHhhHHHHHHHHhc
Q 044682 444 ---------------LPYHLPTSLVEFDDAQSIIAYNNS 467 (755)
Q Consensus 444 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 467 (755)
....||+..|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 024689999999999999987754
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=46.43 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=44.7
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEec
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
.+.+.++.|+|+|+....|+.....| ++++|..-++ ++|++..++|+|.+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQ 91 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCS
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcC
Confidence 57888999999999888888877654 7789999999 799999999999993
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.15 E-value=1.6 Score=39.79 Aligned_cols=54 Identities=11% Similarity=-0.046 Sum_probs=43.3
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecC----CceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGV----DGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~----~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
...+-+++|+|.|.....|++..... ..--++++|..-++ .+|++.+++|++.+
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYV 100 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECB
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEE
Confidence 45678889999999999999985421 11236778999999 89999999999986
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.53 E-value=0.59 Score=40.56 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=43.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec-CCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEG-VDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~-~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
...+.+++++|.|+.+..|+..... +.+..++++|..-.+ ++|++++++|+|.+
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSS 80 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEEC
Confidence 4577889999999999999984321 123347788999889 79999999999998
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.3 Score=60.02 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCCCCceEEEEEccCCCCCCcCcc
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFS 158 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~ 158 (755)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 579999999999999999999996
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=0.61 Score=51.30 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecC
Q 044682 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSE 523 (755)
Q Consensus 487 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 523 (755)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 46889999999876 999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 755 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 5e-45 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-13 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 4e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-11 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 4e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 8e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 6e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 9e-07 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-10 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 5e-04 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-10 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 0.001 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 0.003 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 9e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 9e-05 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 2e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 6e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 7e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 165 bits (417), Expect = 5e-45
Identities = 82/501 (16%), Positives = 158/501 (31%), Gaps = 96/501 (19%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ + + I +IDSG +
Sbjct: 11 VGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNA-------------------------N 43
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+ G ++ T + + HGTH A T N
Sbjct: 44 NVTG----------------TNNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANN 79
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-HDGVDVLSVSLGEPSHK 304
G G P + V + S +++A D + G +V+++SLG
Sbjct: 80 EGVV-GVMPNQNANIHI--VKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGST 136
Query: 305 NTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYV 364
TE +G+L++AAAGN G + +++V A + + ++
Sbjct: 137 TTERNALN------THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFS 190
Query: 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLC----MNHTHGIDKSQL 420
D+ + L+ ++ + + ++ + T
Sbjct: 191 QYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN 250
Query: 421 AAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKT 480
A+ GA VN ++ ++ + + ++ K
Sbjct: 251 ASATGALAECTVNGTSFSCGNMANKIC-------------LVERVGNQGSSYPEINSTKA 297
Query: 481 EFNTKPSPQMTFFSSRGPSTINPNII--KPDITAPGVEIIAAYSEA----VAPSKSPSDD 534
+ + +S P NP ++ DIT P V + A A + S + S+
Sbjct: 298 CKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQ 357
Query: 535 RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYD 594
+ GTSM+TPH+SG+A L+ + HP+ S + +++A+ TA G+
Sbjct: 358 GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR------- 410
Query: 595 GLKATPFEYGAGHVNPNSAMD 615
+ G G +N +A
Sbjct: 411 -----DNQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 72.0 bits (175), Expect = 1e-13
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 494 SSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP-----FNACFGTSMS 548
+ + + + APGV I++ + ++ ++ GTSM+
Sbjct: 324 GTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMA 383
Query: 549 TPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608
PH++G+ +L P+ P I+ + TA + G + + G G V
Sbjct: 384 APHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD------------HDTGYGLV 431
Query: 609 NPNSAMDPGL 618
++A+ L
Sbjct: 432 KLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 51.2 bits (121), Expect = 4e-07
Identities = 35/234 (14%), Positives = 60/234 (25%), Gaps = 54/234 (23%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
I + G ++I+ V+D+GV TH +
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDG------------------------THPDLEGQV 176
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
A + + P + + GTH A T
Sbjct: 177 --------------IAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------- 213
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLD--CRDSDILSAFDDAIHDGVDVLSVSLGEPSH 303
G +P A++ + + D + + A G V++ S G +
Sbjct: 214 GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGY 273
Query: 304 KNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMD 357
T A+ M VV+A N P ++ V A
Sbjct: 274 SYTMKEAFDYAMEHGVVM-----VVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDW 566
+I+APG + + + +N GTSM+TPH+SG+A + +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 567 SPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVN 609
S ++S + A + D G D + G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIGD-----DYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 13/101 (12%), Positives = 23/101 (22%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
I N G + I V+D+GV + N++ +
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHG 72
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTH 226
+ G + A + G G
Sbjct: 73 THVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYS 113
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 61.8 bits (148), Expect = 8e-11
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 18/157 (11%)
Query: 464 YNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSE 523
V + +++ F + IKPD+ APG I++A S
Sbjct: 174 GTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSS 233
Query: 524 AVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD-----WSPAAIKSAIMTT 578
S S + + GTSM+TP ++G L+ P+ +K+A++
Sbjct: 234 LAPDS-SFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG 292
Query: 579 ATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
A N G G V + +++
Sbjct: 293 AADIGLGYPN------------GNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 51/329 (15%), Positives = 96/329 (29%), Gaps = 64/329 (19%)
Query: 124 NVISQNSAWNK-GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQ 182
++ + A + G +G+ I+ V D+G+ S H F
Sbjct: 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM------------------HEAF- 46
Query: 183 CNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVF 242
R + ++ Y + A D +GHGTH A + +GN N +
Sbjct: 47 -------------------RGKITALYALGRTNNANDTNGHGTHVAGSVLGNGSTNKGMA 87
Query: 243 GNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
+G L S++ + F A G + + S G
Sbjct: 88 PQAN-------------LVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV 134
Query: 303 HKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNL--APWLLTVGASTMDREF 360
+ + + + + ++ AAGNEGP T+ A +TVGA+ R
Sbjct: 135 NG---AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS 191
Query: 361 TSYVTLGDEQIFKEIMQGPLTQ------HSMIGNLECNPGAIDPKKINGKILLCMNHTHG 414
+ + +GP G + + + + +
Sbjct: 192 FGSYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYM 251
Query: 415 IDKSQLAAQ-AGAAGLILVNPKQLENESL 442
S AG + + + +
Sbjct: 252 GGTSMATPIVAGNVAQLREHFVKNRGITP 280
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 36/142 (25%)
Query: 473 ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPS 532
A ++ T + FS G DI APGV + + Y + S +
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPGSTYASLN-- 212
Query: 533 DDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITD 592
GTSM+TPH++G A L+K +P WS I++ + TAT+ T
Sbjct: 213 -----------GTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL----- 256
Query: 593 YDGLKATPFEYGAGHVNPNSAM 614
YG+G VN +A
Sbjct: 257 ----------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 53/242 (21%), Positives = 79/242 (32%), Gaps = 65/242 (26%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ +A N+G G V + V+D+G+ TH
Sbjct: 11 VQAPAAHNRGLTGSGVKVAVLDTGI-------------------------STHPDLNIR- 44
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+SF P + +D +GHGTH A T N
Sbjct: 45 ------------------GGASFVPGE--PSTQDGNGHGTHVAGT---------IAALNN 75
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKN 305
G +P A L + K S I + A ++G+ V ++SLG PS
Sbjct: 76 SIGVLGVAPSAELYAVKVLGASG----SGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSA 131
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVT 365
T A G+LVVAA+GN G + + VGA+ + S+
Sbjct: 132 TLEQAV------NSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQ 185
Query: 366 LG 367
G
Sbjct: 186 YG 187
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 59.6 bits (143), Expect = 2e-10
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 28/107 (26%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDW 566
+ ++ APG + + Y + + GTSM++PH++G A L+ + HP+
Sbjct: 194 ELEVMAPGAGVYSTYPTNTYATLN-------------GTSMASPHVAGAAALILSKHPNL 240
Query: 567 SPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613
S + +++ + +TAT F YG G +N +A
Sbjct: 241 SASQVRNRLSSTATYLGS---------------SFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEG 161
I + +G G +V + V+D+G+ + G
Sbjct: 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVG 46
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 4e-10
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603
GTS S P +GI L + + + ++ ++ T+ + T+ G K + Y
Sbjct: 258 GTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHS-Y 316
Query: 604 GAGHVNPNSAMD 615
G G ++ + +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.4 bits (90), Expect = 0.001
Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 13/140 (9%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPE----------SKSFSDEGMGPVPLRWRGICQN 175
++ AW +G G +++ ++D G+ SF P P +
Sbjct: 24 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMND 83
Query: 176 DTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNF 235
+ H + N D +
Sbjct: 84 NRHGTRCAGE--VAAVANNGVCGVGVAYNARIGGVRMLDGEVTDAVEARSLGL-NPNHIH 140
Query: 236 VANVSVFGNGYGTAKGGSPR 255
+ + S G G R
Sbjct: 141 IYSASWGPEDDGKTVDGPAR 160
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 59.1 bits (142), Expect = 4e-10
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 37/153 (24%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
++++ P V S Q FSS GP + D+ APGV I +
Sbjct: 160 GSSSTVGYP-GKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLP 210
Query: 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582
+ A GTSM++PH++G A L+ + HP+W+ ++S++ T T
Sbjct: 211 GN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
Query: 583 DHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
F YG G +N +A
Sbjct: 258 GD---------------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 49.1 bits (116), Expect = 7e-07
Identities = 46/244 (18%), Positives = 78/244 (31%), Gaps = 59/244 (24%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
I + ++G G +V + VIDSG+ G
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG------------------------ 46
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+S P+ E + +D + HGTH VA N
Sbjct: 47 -------------------GASMVPS-ETNPFQDNNSHGTH---------VAGTVAALNN 77
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKN 305
G +P A L + K + S I++ + AI + +DV+++SLG PS
Sbjct: 78 SIGVLGVAPSASLYAVKVLGADG----SGQYSWIINGIEWAIANNMDVINMSLGGPSGSA 133
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVT 365
K A+ ++ + P ++ VGA + S+ +
Sbjct: 134 --ALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSS 191
Query: 366 LGDE 369
+G E
Sbjct: 192 VGPE 195
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.0 bits (141), Expect = 7e-10
Identities = 15/77 (19%), Positives = 32/77 (41%)
Query: 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598
N+ GTS + P +G+ LL +P+ + ++ + +A + D K
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 599 TPFEYGAGHVNPNSAMD 615
YG G ++ + ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 1/124 (0%)
Query: 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIG 189
W G V+ ++D G+ E++ D + N +
Sbjct: 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFND-NTNLPKPRLSDDYHGTR 95
Query: 190 MRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTA 249
+ + Y T + ++ + ++ +G A
Sbjct: 96 CAGEIAAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPA 155
Query: 250 KGGS 253
G
Sbjct: 156 DDGR 159
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 53.0 bits (126), Expect = 4e-08
Identities = 41/243 (16%), Positives = 66/243 (27%), Gaps = 61/243 (25%)
Query: 126 ISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNR 185
+ AW+ + I VID+GV + + D +
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVA 77
Query: 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNG 245
+ N I
Sbjct: 78 GIAAAETNNATGI----------------------------------------------- 90
Query: 246 YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKN 305
G A R+ + ++ + NG SDI A A G +V ++L +
Sbjct: 91 AGMAPN----TRILAVRAL-DRNG---SGTLSDIADAIIYAADSGAEV--INLSLGCDCH 140
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVT 365
T ++A+ +A G +VVAAAGN G ++ VGA S+
Sbjct: 141 TTTLENAV----NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSN 196
Query: 366 LGD 368
G
Sbjct: 197 YGT 199
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 45.7 bits (107), Expect = 9e-06
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEY 603
GTSM++PH++G+A LL + I+ AI TA TG +
Sbjct: 224 GTSMASPHVAGLAALL--ASQGRNNIEIRQAIEQTADKISGTGT--------------YF 267
Query: 604 GAGHVNPNSAMD 615
G +N +A+
Sbjct: 268 KYGRINSYNAVT 279
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 534 DRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG 586
+ GTSM+TPH++G+A L TL + +A + I TA D +
Sbjct: 212 WIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSN 263
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 20/153 (13%)
Query: 463 AYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522
A N + V+ NT P+ + ++ ++ + N K + G + A
Sbjct: 146 AVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAP 205
Query: 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582
+ S P+ GTSM+TPH++G+AGLL S + I++AI TA
Sbjct: 206 GSSIYSTYPTSTYAS----LSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKI 259
Query: 583 DHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615
TG + G VN A+
Sbjct: 260 SGTGT--------------YWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.8 bits (99), Expect = 9e-05
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 124 NVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQC 183
I AW+ G I ++D+GV + + +G + +
Sbjct: 16 QKIQAPQAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTH 74
Query: 184 NRKLIGMRYYNQGQI 198
+ N I
Sbjct: 75 CAGIAAAVTNNSTGI 89
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 54/205 (26%)
Query: 132 WNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMR 191
+ +G G+ I +I G
Sbjct: 17 FPEGLDGQGQCIAIIALGG----------------------------------------- 35
Query: 192 YYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKG 251
Y++ + A P + +DG G A
Sbjct: 36 GYDETSLAQYFASLGVSAPQV---VSVSVDGATNQPTGDPNGPDGEV----ELDIEVAGA 88
Query: 252 GSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKD 311
+P A++A Y + G + ++ ++S+S G P
Sbjct: 89 LAPGAKIAVYFAPNTDAG------FLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIA 142
Query: 312 AIAIGSFHAMMHGILVVAAAGNEGP 336
A+ A G+ V+AAAG+ G
Sbjct: 143 AMNRAFLDAAALGVTVLAAAGDSGS 167
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.4 bits (93), Expect = 6e-04
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 15/206 (7%)
Query: 419 QLAAQAGAAGLILV-----NPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVA 473
++ A A A G N + I ++ A
Sbjct: 151 RIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSA 210
Query: 474 SVSDVKTEFNTKPSPQMTFFSSRGPSTIN---PNIIKPDITAPGVEIIAAYSEAVAPSKS 530
+T +N +++ G ++ P+ PG ++ S A
Sbjct: 211 GAYSNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTG 270
Query: 531 PSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD----WSPAAIKSAIMTTATTTDHTG 586
GTS+++P G+ L++ + + + + + T + D
Sbjct: 271 ALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKS 330
Query: 587 KNPITDYDGLKATP---FEYGAGHVN 609
N G A + G G ++
Sbjct: 331 GNNGYGGYGYNAGTGWDYPTGWGSLD 356
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 16/155 (10%)
Query: 189 GMRYYNQGQIEHARAQNS-SFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYG 247
G ++ + N + T T + +
Sbjct: 35 GGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWD---------LDSQ 85
Query: 248 TAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD-GVDVLSVSLGEPSH-KN 305
+ G + A ++ + AF+ A+ D V++VSLG N
Sbjct: 86 SIVGSAGGAVQQLLF----YMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADAN 141
Query: 306 TEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT 340
+ A A G ++G+EG
Sbjct: 142 ADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.71 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.48 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.31 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.0 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 94.49 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.1e-52 Score=490.72 Aligned_cols=372 Identities=19% Similarity=0.187 Sum_probs=265.0
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHH----HHH--HhCC
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEH----AQQ--LAKH 95 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~----~~~--L~~~ 95 (755)
...+|||.|++... ..++++.+ ..++++.+. .++.+.++++... .+. +..+
T Consensus 30 ~~~~~iV~~k~~~~---------------~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (671)
T d1r6va_ 30 TEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALAL 86 (671)
T ss_dssp CTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCC
T ss_pred CCCeEEEEECCccC---------------HHHHHHhc-------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcC
Confidence 35689999986432 12233322 235566666 5667777766422 222 3358
Q ss_pred CCeEEEEeCcccccccC----CCcc-----------------------ccCCcccccccccccccCCCCCCceEEEEEcc
Q 044682 96 PEVLSIFLDEGRKVQTT----RSWD-----------------------FLGLEKDNVISQNSAWNKGRFGEDVIIGVIDS 148 (755)
Q Consensus 96 p~V~~V~~~~~~~~~~~----~s~~-----------------------~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDt 148 (755)
|+|++|+|+...++... .... .|++..+. .++.|....+|+||+||||||
T Consensus 87 ~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~---~~~a~~~~~tG~gV~VaViDt 163 (671)
T d1r6va_ 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEEASGTNIIVAVVDT 163 (671)
T ss_dssp SSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHHCSCTTCEEEEEES
T ss_pred CCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcC---ccHHHHhcCCCCCCEEEEEcC
Confidence 99999999865543211 0000 11221111 113333456999999999999
Q ss_pred CCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhh
Q 044682 149 GVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAA 228 (755)
Q Consensus 149 Gid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVA 228 (755)
|||++||+|.+. ++..+.+..+.... ...++.|..|||||||
T Consensus 164 Gvd~~Hpdl~~~--------------------------~~~~~~~~~~~~~~------------~~~~~~d~~gHGT~VA 205 (671)
T d1r6va_ 164 GVDGTHPDLEGQ--------------------------VIAGYRPAFDEELP------------AGTDSSYGGSAGTHVA 205 (671)
T ss_dssp CCBTTSGGGTTT--------------------------BCCEEEGGGTEEEC------------TTCBCCTTCSHHHHHH
T ss_pred CcCCCChhhcCC--------------------------cccCccccccCCCC------------CCCcCcccCCCCcccc
Confidence 999999999753 22222322111110 1234567889999999
Q ss_pred HhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecC----CCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCC
Q 044682 229 STAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNV----NGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHK 304 (755)
Q Consensus 229 giiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~----~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~ 304 (755)
|||||+.+ +..+.||||+|+|+++|++++. +.+ ......+++||+||+++|++|||||||+..
T Consensus 206 Giiaa~~~---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g--~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-- 272 (671)
T d1r6va_ 206 GTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNG--YVGDDYVAAGIIWATDHGAKVMNHSWGGWG-- 272 (671)
T ss_dssp HHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTS--BCCHHHHHHHHHHHHHTTCSEEEECEEBSC--
T ss_pred ceeeeecc---------ccceeeecCcceEEEEEecccccccCCCC--cccHHHHHHHHHHHHhCCCcEEeccccccc--
Confidence 99999752 1234899999999999999642 111 366788999999999999999999999764
Q ss_pred CCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecceeec
Q 044682 305 NTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQH 383 (755)
Q Consensus 305 ~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~ 383 (755)
....+..++..+.++|+++|+||||++.+. ...+...|++|+|||++....
T Consensus 273 ----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~------------------------ 324 (671)
T d1r6va_ 273 ----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------ 324 (671)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT------------------------
T ss_pred ----CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC------------------------
Confidence 234555666788999999999999998764 345557899999999864310
Q ss_pred CCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHH
Q 044682 384 SMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIA 463 (755)
Q Consensus 384 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 463 (755)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCC-----CCCCCCcC
Q 044682 464 YNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKS-----PSDDRRIP 538 (755)
Q Consensus 464 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~ 538 (755)
...++.||+|||.. ||+|||++|+++++........ ......+.
T Consensus 325 -----------------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~ 373 (671)
T d1r6va_ 325 -----------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT 373 (671)
T ss_dssp -----------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCC
T ss_pred -----------------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCe
Confidence 13578999999987 9999999999998754322111 11223468
Q ss_pred CeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCCCcc
Q 044682 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGL 618 (755)
Q Consensus 539 y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~l 618 (755)
|..++|||||||||||++|||+|++|+|++.|||++|++||++++..+ .+..||||+||+.+||+..+
T Consensus 374 y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTTTBTCBCCHHHHHHCCC
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCCCcccChhCHHHHhhCcC
Confidence 999999999999999999999999999999999999999999886655 56789999999999998665
Q ss_pred ccc
Q 044682 619 VYD 621 (755)
Q Consensus 619 vyd 621 (755)
..+
T Consensus 442 ~~~ 444 (671)
T d1r6va_ 442 PTQ 444 (671)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.2e-49 Score=442.62 Aligned_cols=352 Identities=23% Similarity=0.277 Sum_probs=239.0
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|. .+|+||+|||||||||++||+|+++ ++..+++...
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~--------------------------~~~~~~~~~~------------- 53 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT------------- 53 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-------------
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC--------------------------eeeeeccCCC-------------
Confidence 5555 4799999999999999999999753 2222222211
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecC--CCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSP--RARLASYKSCWNVNGQPLDCRDSDILSAFDDAI 287 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP--~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~ 287 (755)
.+...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++.... .+...++++||++++
T Consensus 54 --~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~----~~~~~~~~~a~~~a~ 118 (435)
T d1v6ca_ 54 --GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG----WGYSSSLVAAIDTCV 118 (435)
T ss_dssp --CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE----ECCSSCHHHHHHHHH
T ss_pred --CCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccc----cchhhhhhhHHHHHh
Confidence 12346778999999999999998522 23489999 89999999998765 467788999999998
Q ss_pred h-CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEe
Q 044682 288 H-DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 288 ~-~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
+ .+++|||+|||.... ...+..++..+.++|+++|+||||+|+...+.+..++++|+||+++.+.....+..+
T Consensus 119 ~~~~~~vin~S~g~~~~------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~ 192 (435)
T d1v6ca_ 119 NSGGANVVTMSLGGSGS------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (435)
T ss_dssp HTTCCSEEEECCCBSCC------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred hcccceEEecccCCCCC------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCC
Confidence 6 599999999998742 233445666888999999999999998888888889999999998776543221111
Q ss_pred CC-----------------ccEEEEEee--c------ceeecCCCCCCC------------------C--CCCCCCCCCc
Q 044682 367 GD-----------------EQIFKEIMQ--G------PLTQHSMIGNLE------------------C--NPGAIDPKKI 401 (755)
Q Consensus 367 g~-----------------~~~~~g~l~--~------plv~~~~~~~~~------------------c--~~~~~~~~~~ 401 (755)
+. +......+. + ..+......... | ....+...++
T Consensus 193 g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
T d1v6ca_ 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (435)
T ss_dssp CSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccc
Confidence 11 111000000 0 000000000000 0 1112234456
Q ss_pred cceEEEEecCCc------chhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEE
Q 044682 402 NGKILLCMNHTH------GIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASV 475 (755)
Q Consensus 402 ~gkivl~~~~~~------~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 475 (755)
.+++.++.+... ...+.......++.+++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 311 (435)
T d1v6ca_ 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------------------------- 311 (435)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------------------------
T ss_pred ccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------------------------
Confidence 677777776443 445555666666666665554
Q ss_pred ecceeecccCCCCccccccCCCCCCCC--CCCCCCceeeCCCeEEeeecCCCCCC----CCCCCCCCcCCeeeccccchh
Q 044682 476 SDVKTEFNTKPSPQMTFFSSRGPSTIN--PNIIKPDITAPGVEIIAAYSEAVAPS----KSPSDDRRIPFNACFGTSMST 549 (755)
Q Consensus 476 ~~~~~~~~~~~~~~~a~fSS~Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~~~~----~~~~~~~~~~y~~~sGTSmAa 549 (755)
+.+|.... ....||||.+||..|.++........ ..........|..+|||||||
T Consensus 312 -------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 372 (435)
T d1v6ca_ 312 -------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372 (435)
T ss_dssp -------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHH
T ss_pred -------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHH
Confidence 22222211 24578999999998875532100000 000001124799999999999
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCC
Q 044682 550 PHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 550 P~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
|||||++|||+|+||+|+|+|||++||+||++++... ++++||+|+||+.+|++
T Consensus 373 P~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~~~------------~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCCCC------------CCCCcccceecHHHHHH
Confidence 9999999999999999999999999999998875443 67899999999999965
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.7e-48 Score=409.40 Aligned_cols=259 Identities=28% Similarity=0.356 Sum_probs=210.8
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|+++.+|+||+|||||||||++||+|.++ ++..+.|...
T Consensus 21 ~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T d1dbia_ 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccCC------------
Confidence 48999999999999999999999999999742 3333333321
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...++++||+++++
T Consensus 63 -----~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~----~~~~~~~~~ai~~a~~ 125 (280)
T d1dbia_ 63 -----DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNG----SGTLSDIADAIIYAAD 125 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTS----CCCHHHHHHHHHHHHH
T ss_pred -----CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCC----CcCHHHHHHHHHHHHH
Confidence 235668899999999999988532 23358999999999999998776 5789999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
+|++|||+|||.... .+....+...+.++|+++|+||||+|......+...+++|+|||.+.+
T Consensus 126 ~g~~iin~S~g~~~~------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~----------- 188 (280)
T d1dbia_ 126 SGAEVINLSLGCDCH------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------- 188 (280)
T ss_dssp TTCSEEEECCSSCCC------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------
T ss_pred cCCcEeecccccccc------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC-----------
Confidence 999999999998742 223344556888999999999999997766677788999999987643
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
+.++.||++||.. |++|||.+|++....
T Consensus 189 ---------------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~~----- 216 (280)
T d1dbia_ 189 ---------------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG----- 216 (280)
T ss_dssp ---------------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT-----
T ss_pred ---------------------------------------CCcCCcCCCCCcc--------cccCCccceeccccC-----
Confidence 5788999999976 999999999999876
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCcc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 608 (755)
..|..++|||||||+|||++|||+|. .+++.+||++|++||+++.. ++..||+|+|
T Consensus 217 --------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~--------------~~~~~G~G~l 272 (280)
T d1dbia_ 217 --------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG--------------TGTYFKYGRI 272 (280)
T ss_dssp --------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT--------------BTTTBSSEEC
T ss_pred --------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC--------------CCCcCCCCeE
Confidence 37899999999999999999999995 56899999999999987653 3467999999
Q ss_pred CccccCC
Q 044682 609 NPNSAMD 615 (755)
Q Consensus 609 d~~~Al~ 615 (755)
|+++||+
T Consensus 273 n~~~Al~ 279 (280)
T d1dbia_ 273 NSYNAVT 279 (280)
T ss_dssp CHHHHHT
T ss_pred cHHHHcC
Confidence 9999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=2.3e-48 Score=407.42 Aligned_cols=256 Identities=29% Similarity=0.427 Sum_probs=213.0
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|.++++|+||+|||||||||++||+|+. .+.++|..+
T Consensus 15 ~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~----------------------------~~~~~~~~~------------- 53 (274)
T d1r0re_ 15 KVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVAG------------- 53 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECSTT-------------
T ss_pred HHHHcCCCCCCeEEEEECCCCCCCChhhcc----------------------------cCCccccCC-------------
Confidence 899999999999999999999999999952 223334322
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+.|..+|||||||||++.... ..+.|+||+|+|+.+|+++..+ .+..++++++++++.++
T Consensus 54 ----~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~----~~~~~~i~~ai~~a~~~ 116 (274)
T d1r0re_ 54 ----EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSG----SGSYSGIVSGIEWATTN 116 (274)
T ss_dssp ----CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTS----EECHHHHHHHHHHHHHT
T ss_pred ----CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCC----CcCHHHHHHHHHHHHhc
Confidence 124557889999999999987522 2248999999999999998776 46789999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC----ccccCCCceEEeccccCCceeEEEEE
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD----TVVNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
+++|+|+|||.... .........++.++++++|+||||+|.... ..+...+++|+|||++.+
T Consensus 117 ~~~i~n~S~~~~~~------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~-------- 182 (274)
T d1r0re_ 117 GMDVINMSLGGASG------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN-------- 182 (274)
T ss_dssp TCSEEEECEEBSSC------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT--------
T ss_pred CCceeccccccccc------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC--------
Confidence 99999999998742 223344556788999999999999986532 233456899999987643
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.||++||.+ ||+|||++|+++.+.
T Consensus 183 ------------------------------------------~~~~~~s~~g~~~--------di~APG~~i~~~~~~-- 210 (274)
T d1r0re_ 183 ------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYPT-- 210 (274)
T ss_dssp ------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT--
T ss_pred ------------------------------------------CCcccccCCCCCE--------EEEecCCCcccccCC--
Confidence 5678999999854 999999999999876
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGA 605 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 605 (755)
+.|..++|||||||+|||++|||+|++|++++.+||++|++||+++. ++..||+
T Consensus 211 -----------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~---------------~~~~~G~ 264 (274)
T d1r0re_ 211 -----------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG---------------SSFYYGK 264 (274)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------------CHHHHTT
T ss_pred -----------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------CCCceEc
Confidence 37899999999999999999999999999999999999999998753 3468999
Q ss_pred CccCccccCC
Q 044682 606 GHVNPNSAMD 615 (755)
Q Consensus 606 G~vd~~~Al~ 615 (755)
|+||+.+||+
T Consensus 265 G~ln~~~A~~ 274 (274)
T d1r0re_ 265 GLINVEAAAQ 274 (274)
T ss_dssp CBCCHHHHTC
T ss_pred CeecHHHhcC
Confidence 9999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.3e-47 Score=402.79 Aligned_cols=258 Identities=28% Similarity=0.403 Sum_probs=218.7
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~--------------------------~~~~~~~~~~------------ 61 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------ 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC--------------------------eecccccccc------------
Confidence 4899988 999999999999999999999742 4444454432
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..+|||||||+|++...++ ..+.|+||+|+|+.+|++...+ .+...+++++|+++++
T Consensus 62 -----~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~----~~~~~~~~~ai~~~~~ 124 (279)
T d1thma_ 62 -----DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSG----SGTWTAVANGITYAAD 124 (279)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHH
T ss_pred -----CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCC----CCcHHHHHHHHHHHhh
Confidence 2356788999999999999986432 3358999999999999998776 4788999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
.+++|+|+|||.... ......+...+.++|+++|+|+||+|......+...|++|+|||++.+
T Consensus 125 ~~~~i~n~S~G~~~~------~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~----------- 187 (279)
T d1thma_ 125 QGAKVISLSLGGTVG------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----------- 187 (279)
T ss_dssp TTCSEEEECCCBSSC------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-----------
T ss_pred cCCceeccccCcccc------chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-----------
Confidence 999999999997742 233445566788999999999999998877777788999999997653
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
+.++.||++|++. ||+|||.+|+++.+.
T Consensus 188 ---------------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~----- 215 (279)
T d1thma_ 188 ---------------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT----- 215 (279)
T ss_dssp ---------------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT-----
T ss_pred ---------------------------------------CCCccccCCCceE--------EEeeeeeccccccCc-----
Confidence 5788999999987 999999999999887
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCcc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 608 (755)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+|+|
T Consensus 216 --------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g--------------~~~~~G~G~v 271 (279)
T d1thma_ 216 --------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG--------------TGTYWAKGRV 271 (279)
T ss_dssp --------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--------------BTTTBSSEEC
T ss_pred --------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--------------CCCcceeeeE
Confidence 3799999999999999999999999765 899999999999987643 3467999999
Q ss_pred CccccCC
Q 044682 609 NPNSAMD 615 (755)
Q Consensus 609 d~~~Al~ 615 (755)
|+.+||+
T Consensus 272 n~~~Av~ 278 (279)
T d1thma_ 272 NAYKAVQ 278 (279)
T ss_dssp CHHHHHH
T ss_pred cHHHhhC
Confidence 9999986
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.4e-47 Score=400.17 Aligned_cols=256 Identities=31% Similarity=0.438 Sum_probs=216.3
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|.++++|+||+|+||||||+ +||+|... ..+.|.++
T Consensus 14 ~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----------------------------~~~~~~~~------------ 52 (269)
T d1gcia_ 14 PAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----------------------------GGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----------------------------EEEECSTT------------
T ss_pred HHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----------------------------ccccccCC------------
Confidence 38999999999999999999998 89999531 22233321
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|..+|||||||||++... .....|+||+|+|+.+|++...+ ......+.++++++..
T Consensus 53 -----~~~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~----~~~~~~~~~ai~~~~~ 114 (269)
T d1gcia_ 53 -----EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG----SGSVSSIAQGLEWAGN 114 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS----CBCHHHHHHHHHHHHH
T ss_pred -----CCCccccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCC----CccHHHHHHHHHHHHh
Confidence 23456788999999999998752 23357999999999999998776 4778899999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
+++++||+|||.... ......+...+.++|+++|+||||+|......+...|++|+||+++.+
T Consensus 115 ~~~~~in~s~g~~~~------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------- 177 (269)
T d1gcia_ 115 NGMHVANLSLGSPSP------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------- 177 (269)
T ss_dssp TTCSEEEECCCBSSC------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------
T ss_pred ccccccccccccccc------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-----------
Confidence 999999999997742 223344556888999999999999998777777788999999997643
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
+.++.||++||.. ||+|||.++.++.+.
T Consensus 178 ---------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~----- 205 (269)
T d1gcia_ 178 ---------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG----- 205 (269)
T ss_dssp ---------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-----
T ss_pred ---------------------------------------CCcccccCCCCCc--------eEEEeeecceeccCC-----
Confidence 5678999999976 999999999999876
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCcc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHV 608 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 608 (755)
..|..++|||||||+|||++|||+|++|++++++||++|++||+++.. +..||+|+|
T Consensus 206 --------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------------~~~~G~G~l 262 (269)
T d1gcia_ 206 --------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------------TNLYGSGLV 262 (269)
T ss_dssp --------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC---------------HHHHTTCBC
T ss_pred --------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcccCeE
Confidence 379999999999999999999999999999999999999999987642 357999999
Q ss_pred CccccCC
Q 044682 609 NPNSAMD 615 (755)
Q Consensus 609 d~~~Al~ 615 (755)
|+++|++
T Consensus 263 n~~~Avk 269 (269)
T d1gcia_ 263 NAEAATR 269 (269)
T ss_dssp CHHHHTC
T ss_pred cHHHhcC
Confidence 9999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=9.1e-48 Score=404.33 Aligned_cols=259 Identities=32% Similarity=0.446 Sum_probs=214.1
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|+++++|+||+|||||||||++||+|+.. ..+++...
T Consensus 14 ~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----------------------------~~~~~~~~------------ 53 (281)
T d1to2e_ 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----------------------------GGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----------------------------EEEECCTT------------
T ss_pred HHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----------------------------CCccccCC------------
Confidence 38999999999999999999999999999631 12222211
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
+.....+..+|||||||||+|.... ....|+||+|+|+.+|++..++ .....+++++|+++++
T Consensus 54 ----~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~----~~~~~~~~~ai~~a~~ 116 (281)
T d1to2e_ 54 ----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADG----SGQYSWIINGIEWAIA 116 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTS----EECHHHHHHHHHHHHH
T ss_pred ----CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCC----CcCHHHHHHHHHHHHh
Confidence 1112234679999999999997521 2348999999999999998766 4678899999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc----cccCCCceEEeccccCCceeEEEE
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT----VVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
.+++|+|+|||... ....+..++..+.++|+++|+||||+|..... .+...+++|+||+++.+
T Consensus 117 ~~~~v~n~S~g~~~------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------- 183 (281)
T d1to2e_ 117 NNMDVINMSLGGPS------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------- 183 (281)
T ss_dssp TTCSEEEECEEBSC------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-------
T ss_pred ccccccccccCCCc------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC-------
Confidence 99999999999763 23445666678899999999999999865322 34467899999997643
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++||.. |++|||.+|+++.+.
T Consensus 184 -------------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~- 211 (281)
T d1to2e_ 184 -------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPG- 211 (281)
T ss_dssp -------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCC-
Confidence 5678999999987 999999999999876
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCC
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 604 (755)
+.|..++|||||||+|||++|||+|++|.|++.+||++|++||+++.. +..||
T Consensus 212 ------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~---------------~~~~G 264 (281)
T d1to2e_ 212 ------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD---------------SFYYG 264 (281)
T ss_dssp ------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC---------------HHHHT
T ss_pred ------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCcc
Confidence 378999999999999999999999999999999999999999987642 35799
Q ss_pred CCccCccccCCC
Q 044682 605 AGHVNPNSAMDP 616 (755)
Q Consensus 605 ~G~vd~~~Al~~ 616 (755)
+|+||+.+|++.
T Consensus 265 ~G~ld~~~A~~~ 276 (281)
T d1to2e_ 265 KGLINVQAAAQH 276 (281)
T ss_dssp TCBCCHHHHTSS
T ss_pred cCcccHHHHHhh
Confidence 999999999993
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=1e-42 Score=370.36 Aligned_cols=287 Identities=25% Similarity=0.353 Sum_probs=215.4
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+++|+||+|+|||||||++||+|.+. +...++|......
T Consensus 16 ~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~--------------------------~~~~~~~~~~~~~--------- 60 (309)
T d2ixta1 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATTP--------- 60 (309)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSSC---------
T ss_pred hhhhccCCCCCCeEEEEEccCCCCCChhHhcc--------------------------ccccccccCCCCC---------
Confidence 48999999999999999999999999999743 3334444432111
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
......|..||||||||||+|...++ ...+.||||+|+|+.++++...+ .+..++++++++++++
T Consensus 61 ----~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~a~~ 125 (309)
T d2ixta1 61 ----INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSG----SGYSDDIAAAIRHAAD 125 (309)
T ss_dssp ----EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTS----CCCHHHHHHHHHHHHH
T ss_pred ----CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCC----Cccccccccccccccc
Confidence 12345678899999999999875321 23358999999999999988776 4788899999999887
Q ss_pred CC-----CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccc--cCCCceEEeccccCCceeE
Q 044682 289 DG-----VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVV--NLAPWLLTVGASTMDREFT 361 (755)
Q Consensus 289 ~g-----vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~ 361 (755)
.+ ..|+|+||+... .......+...+.++|+++|+||||++....... ...+++++|++.+......
T Consensus 126 ~~~~~~~~~v~~~s~~~~~------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~ 199 (309)
T d2ixta1 126 QATATGTKTIISMSLGSSA------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG 199 (309)
T ss_dssp HHHHHTCCEEEEECCCBSS------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT
T ss_pred ccccccccccccccccccc------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc
Confidence 53 468999998763 2233445556788999999999999987655433 3458889888765322100
Q ss_pred EEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCC
Q 044682 362 SYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENES 441 (755)
Q Consensus 362 ~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 441 (755)
...
T Consensus 200 ~~~----------------------------------------------------------------------------- 202 (309)
T d2ixta1 200 TYR----------------------------------------------------------------------------- 202 (309)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeee
Q 044682 442 LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAY 521 (755)
Q Consensus 442 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 521 (755)
.........++++|+.. ....||||+|||.+|+++.
T Consensus 203 ------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~ 238 (309)
T d2ixta1 203 ------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTW 238 (309)
T ss_dssp ------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEEC
T ss_pred ------------------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeec
Confidence 00013444567777765 5678999999999999998
Q ss_pred cCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCC
Q 044682 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPF 601 (755)
Q Consensus 522 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 601 (755)
+. ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+ . ......+++
T Consensus 239 ~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~-~----~g~~~~~~~ 300 (309)
T d2ixta1 239 YN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG-G----YGAAIGDDY 300 (309)
T ss_dssp TT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCB-S----TTCCSSSBT
T ss_pred CC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-C----cCCccCCCc
Confidence 76 37999999999999999999999999999999999999999999876543 1 112344677
Q ss_pred cCCCCccCc
Q 044682 602 EYGAGHVNP 610 (755)
Q Consensus 602 ~~G~G~vd~ 610 (755)
.+|+|++|+
T Consensus 301 ~~g~G~~~v 309 (309)
T d2ixta1 301 ASGFGFARV 309 (309)
T ss_dssp TTBTCBCCC
T ss_pred ccCCCEecC
Confidence 889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.9e-42 Score=363.09 Aligned_cols=242 Identities=28% Similarity=0.341 Sum_probs=194.9
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
..|....+|+||+|+|||||||++||+|.++ +.....+
T Consensus 22 ~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~--------------------------~~~~~~~---------------- 59 (279)
T d2pwaa1 22 TYYYDESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTY---------------- 59 (279)
T ss_dssp CEECCTTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEES----------------
T ss_pred cceecCCCCCCeEEEEECcCCCCCChhhcCC--------------------------ceeccCC----------------
Confidence 3333566999999999999999999999753 1111111
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+.|.+||||||||||+|+. .|+||+|+|+.+|++.... ....+.+..+++++...
T Consensus 60 ----~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~----~~~~~~~~~~~~~~~~~ 117 (279)
T d2pwaa1 60 ----YYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG----SGQYSTIIAGMDFVASD 117 (279)
T ss_dssp ----SSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS----CCCHHHHHHHHHHHHHH
T ss_pred ----CCCcccccCccccccccccccc--------------cccCCCccccceeeecCCc----ccccccccchhheeccc
Confidence 1234578899999999999874 6999999999999988766 47788889999988764
Q ss_pred -------CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeE
Q 044682 290 -------GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFT 361 (755)
Q Consensus 290 -------gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~ 361 (755)
+++|+|+|||... .+.+..++..+.++|+++|+||||++.+... .+...|++|+|||++.+
T Consensus 118 ~~~~~~~~~~i~n~s~g~~~-------~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~---- 186 (279)
T d2pwaa1 118 KNNRNCPKGVVASLSLGGGY-------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY---- 186 (279)
T ss_dssp GGGSCCTTEEEEEECCCEEC-------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----
T ss_pred ccccccccccceeccCCCcc-------ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec----
Confidence 4459999999753 2345566678889999999999999876443 34467999999997643
Q ss_pred EEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCC
Q 044682 362 SYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENES 441 (755)
Q Consensus 362 ~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 441 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeee
Q 044682 442 LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAY 521 (755)
Q Consensus 442 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 521 (755)
+.++.||++||.. ||+|||.+|++++
T Consensus 187 ----------------------------------------------g~~~~~S~~G~~~--------dv~APG~~i~s~~ 212 (279)
T d2pwaa1 187 ----------------------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTW 212 (279)
T ss_dssp ----------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEE
T ss_pred ----------------------------------------------CCCccccCCCCcc--------ccccccccccccc
Confidence 5788999999976 9999999999998
Q ss_pred cCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCC
Q 044682 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPF 601 (755)
Q Consensus 522 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 601 (755)
+. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ..
T Consensus 213 ~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~~ 262 (279)
T d2pwaa1 213 IG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------LS 262 (279)
T ss_dssp TT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------CB
T ss_pred cC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------CC
Confidence 76 3799999999999999999999999999999887775 778887532 34
Q ss_pred cCCCCccCc
Q 044682 602 EYGAGHVNP 610 (755)
Q Consensus 602 ~~G~G~vd~ 610 (755)
.+|+|++|+
T Consensus 263 ~~g~g~~n~ 271 (279)
T d2pwaa1 263 NIPFGTVNL 271 (279)
T ss_dssp SCCTTSCCE
T ss_pred CCCCCChhh
Confidence 689999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=5e-41 Score=358.60 Aligned_cols=298 Identities=26% Similarity=0.313 Sum_probs=219.1
Q ss_pred ccccC-CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 130 SAWNK-GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 130 ~~~~~-~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
.+|.. |++|+||+|||||||||++||+|.... .| ..++...+.+.
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~--------------~~~~~~~~~~~-------------- 57 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF--------------RGKITALYALG-------------- 57 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT--------------TTCEEEEEETT--------------
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc--------------CCcEEeecCCC--------------
Confidence 67775 999999999999999999999997531 01 12222222221
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
....+.|..||||||||||+|+... ..||||+|+|+.+|++...+.. ......+..+++++..
T Consensus 58 ----~~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~--~~~~~~~~~~~~~~~~ 120 (318)
T d1wmda2 58 ----RTNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGL--GGLPSNLQTLFSQAYS 120 (318)
T ss_dssp ----TTTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSC--TTSCSSHHHHHHHHHH
T ss_pred ----CCCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccc--cccchhhHHHHHHHHh
Confidence 1235567899999999999997421 3799999999999999876532 2445567889999999
Q ss_pred CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcccc--CCCceEEeccccCCceeEEEEEe
Q 044682 289 DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN--LAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
.+++|+|+|||... ..........+...+.++++++|+|+||.|........ ..++++++.+........
T Consensus 121 ~~~~i~~~S~g~~~---~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~----- 192 (318)
T d1wmda2 121 AGARIHTNSWGAAV---NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----- 192 (318)
T ss_dssp TTCSEEEECCCBCC---TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----
T ss_pred cCCceeeccccccc---ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-----
Confidence 99999999999874 22233444555566789999999999999977665444 457778777654321000
Q ss_pred CCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCC
Q 044682 367 GDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPY 446 (755)
Q Consensus 367 g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 446 (755)
T Consensus 193 -------------------------------------------------------------------------------- 192 (318)
T d1wmda2 193 -------------------------------------------------------------------------------- 192 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCC
Q 044682 447 HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526 (755)
Q Consensus 447 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 526 (755)
.........+..+|++||.. ....|||++|||.+|+++......
T Consensus 193 ----------------------------------~~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~ 236 (318)
T d1wmda2 193 ----------------------------------GSYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAP 236 (318)
T ss_dssp ----------------------------------CGGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCC
T ss_pred ----------------------------------ccccccccccccccccCCCc--CCCcccceeecCceEEeccccccc
Confidence 00001124677899999987 678999999999999998766432
Q ss_pred CCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-----CCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCC
Q 044682 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-----PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPF 601 (755)
Q Consensus 527 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 601 (755)
... ........|..++|||||||+|||++|||+|++ +.++|.+||++|++||+++.... ++.
T Consensus 237 ~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~------------~~~ 303 (318)
T d1wmda2 237 DSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY------------PNG 303 (318)
T ss_dssp GGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCS------------SCT
T ss_pred cCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCCC------------CCC
Confidence 111 011122467789999999999999999999975 46889999999999998876544 567
Q ss_pred cCCCCccCccccCC
Q 044682 602 EYGAGHVNPNSAMD 615 (755)
Q Consensus 602 ~~G~G~vd~~~Al~ 615 (755)
.||||+||+.+||+
T Consensus 304 ~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 304 NQGWGRVTLDKSLN 317 (318)
T ss_dssp TTTTCBCCHHHHHT
T ss_pred CeeeceecHHHHhC
Confidence 89999999999987
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-39 Score=347.44 Aligned_cols=287 Identities=16% Similarity=0.197 Sum_probs=197.2
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
+.+|..+.+|+||+|||||||||++||+|.++ +.....|......
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~--------------------------~~~~~~~~~~~~~--------- 71 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGN--------------------------YDPGASFDVNDQD--------- 71 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG--------------------------BCGGGCEETTTTB---------
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhc--------------------------cccCCCccccCCC---------
Confidence 37999999999999999999999999999753 1111111110000
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
..........|..+|||||||||+|...++.. ..|+||+++++.+|+.. ....+.++++.++++
T Consensus 72 ~~~~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~--------~~~~~~~~~~~~~~~ 135 (334)
T d1p8ja2 72 PDPQPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD--------GEVTDAVEARSLGLN 135 (334)
T ss_dssp SCCCCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS--------SCCCHHHHHHHHTSC
T ss_pred CccccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhcc--------ccccchHHHHHHHhh
Confidence 00111234557899999999999998643322 37899999999999875 334456677777765
Q ss_pred -CCCcEEEEcCCCCCCCCC-----C-chhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcccc----CCCceEEeccccCC
Q 044682 289 -DGVDVLSVSLGEPSHKNT-----E-YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN----LAPWLLTVGASTMD 357 (755)
Q Consensus 289 -~gvdVIn~SlG~~~~~~~-----~-~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgA~~~~ 357 (755)
++++++|+|||....... . .....+......+..+|+++|+||||++........ ..+.+++|++.+..
T Consensus 136 ~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (334)
T d1p8ja2 136 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF 215 (334)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT
T ss_pred hcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC
Confidence 689999999997631000 0 111223334445678999999999998765433322 33556777765432
Q ss_pred ceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCC
Q 044682 358 REFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQL 437 (755)
Q Consensus 358 ~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 437 (755)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCC--
Q 044682 438 ENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV-- 515 (755)
Q Consensus 438 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-- 515 (755)
+..+.||++|+... .+..+||.
T Consensus 216 --------------------------------------------------g~~~~~s~~~~~~~------~~~~~~~~~~ 239 (334)
T d1p8ja2 216 --------------------------------------------------GNVPWYSEACSSTL------ATTYSSGNQN 239 (334)
T ss_dssp --------------------------------------------------SCCCTTCCBCTTCC------EEEECCCSTT
T ss_pred --------------------------------------------------CceeeecccCCccc------cccccccccc
Confidence 45566777776541 13344443
Q ss_pred ---eEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccC
Q 044682 516 ---EIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITD 592 (755)
Q Consensus 516 ---~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~ 592 (755)
.+.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++..... ..+..
T Consensus 240 ~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~-~~~~~ 305 (334)
T d1p8ja2 240 EKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA-DDWAT 305 (334)
T ss_dssp SCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC-SCCEE
T ss_pred cccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC-ccccc
Confidence 23333222 37889999999999999999999999999999999999999999876654 33333
Q ss_pred CCCCCCCCCcCCCCccCccccCCC
Q 044682 593 YDGLKATPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 593 ~~~~~~~~~~~G~G~vd~~~Al~~ 616 (755)
.......+..||+|+||+++||+.
T Consensus 306 ~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 306 NGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp CTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred cCCCcccCCCCcceEeCHHHHHHH
Confidence 333344556899999999999984
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-39 Score=349.61 Aligned_cols=289 Identities=18% Similarity=0.199 Sum_probs=207.3
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+++|+||+|||||||||++||+|+++-. ..+.+.|.+..
T Consensus 37 ~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~------------------------~~~~~~~~~~~------------ 80 (339)
T d2id4a2 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC------------------------AEGSWDFNDNT------------ 80 (339)
T ss_dssp HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC------------------------GGGCEETTTTB------------
T ss_pred HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc------------------------cccccccccCC------------
Confidence 899999999999999999999999999985300 01122333210
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
.......+..+|||||||+|+|....+. ...||||+|+|+.+++... .....++..++.+++..
T Consensus 81 --~~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 144 (339)
T d2id4a2 81 --NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG------DITTEDEAASLIYGLDV 144 (339)
T ss_dssp --SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS------CCCHHHHHHHTTTTTTT
T ss_pred --CccCCCcccccccceeeecccccccccc--------cccccccccccceEEEeec------cccchHHHHHHHHHHhh
Confidence 0122445678999999999998754332 2489999999999998753 26778888999888776
Q ss_pred CCcEEEEcCCCCCCCC-----CCchhh-HHHHHHHHHHhcCcEEEEeccCCCCCCCcccc----CCCceEEeccccCCce
Q 044682 290 GVDVLSVSLGEPSHKN-----TEYFKD-AIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN----LAPWLLTVGASTMDRE 359 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~-----~~~~~~-~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgA~~~~~~ 359 (755)
. +|+|+|||...... ...... ....+...+..+|+++|+||||++........ ..+.+++|++++..
T Consensus 145 ~-~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 221 (339)
T d2id4a2 145 N-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK-- 221 (339)
T ss_dssp C-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT--
T ss_pred C-CEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccccc--
Confidence 4 99999998752100 011112 12333445667999999999998755433221 23556666655432
Q ss_pred eEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCC
Q 044682 360 FTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLEN 439 (755)
Q Consensus 360 ~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 439 (755)
T Consensus 222 -------------------------------------------------------------------------------- 221 (339)
T d2id4a2 222 -------------------------------------------------------------------------------- 221 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEe
Q 044682 440 ESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIA 519 (755)
Q Consensus 440 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 519 (755)
+..+.||++|+.. ...++..+||..|.+
T Consensus 222 ------------------------------------------------g~~~~~s~~~~~~----~~~~~~~~~g~~~~s 249 (339)
T d2id4a2 222 ------------------------------------------------DLHPPYSEGCSAV----MAVTYSSGSGEYIHS 249 (339)
T ss_dssp ------------------------------------------------SCCCTTCCCCTTE----EEEEECSBTTBCEEE
T ss_pred ------------------------------------------------ccccccccccCcc----ceeeeeeccccccce
Confidence 4556777777653 345578889999988
Q ss_pred eecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCC
Q 044682 520 AYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKAT 599 (755)
Q Consensus 520 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 599 (755)
+.... ..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++......+.+.......
T Consensus 250 ~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~ 317 (339)
T d2id4a2 250 SDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 317 (339)
T ss_dssp ECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEE
T ss_pred eccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCc
Confidence 76542 368889999999999999999999999999999999999999998765431223333334445
Q ss_pred CCcCCCCccCccccCCCc
Q 044682 600 PFEYGAGHVNPNSAMDPG 617 (755)
Q Consensus 600 ~~~~G~G~vd~~~Al~~~ 617 (755)
+..||||+||+.+||+.+
T Consensus 318 ~~~~G~G~ln~~~Av~~a 335 (339)
T d2id4a2 318 SHRYGFGKIDAHKLIEMS 335 (339)
T ss_dssp BTTTBTCBCCHHHHHHHH
T ss_pred CCCccchhhCHHHHHHHH
Confidence 677999999999999854
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=8.4e-31 Score=282.95 Aligned_cols=316 Identities=16% Similarity=0.130 Sum_probs=183.7
Q ss_pred cCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCC
Q 044682 133 NKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTP 212 (755)
Q Consensus 133 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~ 212 (755)
.++++|+||+|||||||||++||+|.+. |+. + +. ..
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---------------------~-----------~~----~~ 53 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---------------------L-----------GV----SA 53 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---------------------T-----------TC----CC
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh---------------------c-----------CC----CC
Confidence 3689999999999999999999999631 000 0 00 00
Q ss_pred CCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh---hhC
Q 044682 213 EHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA---IHD 289 (755)
Q Consensus 213 ~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a---~~~ 289 (755)
....+.+..+|+||+++++++...+.. .....+.||||+|+|+.+|+... ...++.+++++ .++
T Consensus 54 ~~~~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~---------~~~~~~~i~~~~~~~~~ 120 (357)
T d1t1ga_ 54 PQVVSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT---------DAGFLNAITTAVHDPTH 120 (357)
T ss_dssp CCEEEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS---------HHHHHHHHHHHHHCTTT
T ss_pred CCCceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC---------CCchHHHHHHHHHhhhc
Confidence 011233466788888877765432110 01123589999999999999643 23344455544 456
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc--------cccCCCceEEeccccCCceeE
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT--------VVNLAPWLLTVGASTMDREFT 361 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA~~~~~~~~ 361 (755)
+++|||+|||.............+......+..+|+++|+|+||+|..... .....+++++|++......
T Consensus 121 ~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 198 (357)
T d1t1ga_ 121 KPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS-- 198 (357)
T ss_dssp CCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC--
T ss_pred CCeEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC--
Confidence 999999999986321122233455666677888999999999999854322 2224578888887643211
Q ss_pred EEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCC
Q 044682 362 SYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENES 441 (755)
Q Consensus 362 ~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 441 (755)
.+....... ....
T Consensus 199 ------~~~~~~~~~-----~~~~-------------------------------------------------------- 211 (357)
T d1t1ga_ 199 ------AGRIERETV-----WNDG-------------------------------------------------------- 211 (357)
T ss_dssp ------SSCEEEEEE-----CBCH--------------------------------------------------------
T ss_pred ------CCcccccee-----cccc--------------------------------------------------------
Confidence 000000000 0000
Q ss_pred CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeE--Ee
Q 044682 442 LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEI--IA 519 (755)
Q Consensus 442 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I--~s 519 (755)
.. ..... .-+.... ............+++.+++. .++.|||+.+++... .+
T Consensus 212 --------------------~~-~~~~~---~g~s~~~-~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~ 264 (357)
T d1t1ga_ 212 --------------------PD-GGSTG---GGVSRIF-PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYE 264 (357)
T ss_dssp --------------------HH-HCBCC---CEECSSS-CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEE
T ss_pred --------------------cc-ccccc---CCccccc-ccCcccccccccccccCCCC--CCceecceecccCCCCceE
Confidence 00 00000 0000000 00001124556777888776 899999999987654 44
Q ss_pred eecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC---CCHHHHHHHHHhcccccCCCCCCcccCC---
Q 044682 520 AYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD---WSPAAIKSAIMTTATTTDHTGKNPITDY--- 593 (755)
Q Consensus 520 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---~sp~~ik~~L~~TA~~~~~~~~~~~~~~--- 593 (755)
.... +.|..++|||||||||||++|||+|+++. +...+++++...+.+++.... ......
T Consensus 265 ~~~~-------------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~-~~~~~~~~~ 330 (357)
T d1t1ga_ 265 VVID-------------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGN-NDIANRARI 330 (357)
T ss_dssp EEET-------------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCB-CCCSSSSCC
T ss_pred EecC-------------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccC-CCCCCCCCc
Confidence 4443 38999999999999999999999998743 233344433333322221100 111100
Q ss_pred -CCCCCCCCcCCCCccCccccCC
Q 044682 594 -DGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 594 -~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
...+.++..+|||++|+.++++
T Consensus 331 ~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 331 YQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp SBCCSSSBTTTBTCEECHHHHHH
T ss_pred ccCccCCCCCccCchhhHHHHHH
Confidence 1234467789999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.5e-28 Score=267.23 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=94.0
Q ss_pred CCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh-CCCcEEEEc
Q 044682 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH-DGVDVLSVS 297 (755)
Q Consensus 219 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~-~gvdVIn~S 297 (755)
+..+||||+++++.+.. +...+.||||+|+|+.++++.+.+ .....+++++|++|++ ++++|||+|
T Consensus 66 ~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~~----~~~~~~~~~a~~~a~~~~~~~Vis~S 132 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQS----ASGNTGLTQAFNQAVSDNVAKVINVS 132 (369)
T ss_dssp TTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECTT----SSTTHHHHHHHHHHHHHCCCSEEEEC
T ss_pred CCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCCC----CcchHHHHHHHHHHHHcCCCceeecc
Confidence 46789999999987653 122358999999999999998876 4778899999999996 479999999
Q ss_pred CCCCCCC-CCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc-------------cccCCCceEEecccc
Q 044682 298 LGEPSHK-NTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT-------------VVNLAPWLLTVGAST 355 (755)
Q Consensus 298 lG~~~~~-~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~-------------~~~~~p~vitVgA~~ 355 (755)
||..... ......+.+..++.++..+|++||+||||+|..... .+...+++++|+++.
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 133 LGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp CCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 9975210 012334556667778889999999999999864321 122458899999864
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=2e-08 Score=79.59 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=55.7
Q ss_pred CceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEEEE
Q 044682 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIF 102 (755)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~V~ 102 (755)
+++|||.|+++... .....+..++.+ ...++.+.|+ .|+||+++|++++++.|+++|+|.+|+
T Consensus 1 e~~YIV~fK~~~~~---------~~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE 63 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA---------MSSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE 63 (71)
T ss_dssp CEEEEEEECSSSSC---------CSHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCCh---------HHHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence 47899999998764 222344444443 3358899998 799999999999999999999999999
Q ss_pred eCccccc
Q 044682 103 LDEGRKV 109 (755)
Q Consensus 103 ~~~~~~~ 109 (755)
+|+.++.
T Consensus 64 ~D~v~~a 70 (71)
T d1scjb_ 64 EDHIAHE 70 (71)
T ss_dssp ECCEEEE
T ss_pred CCcEEEc
Confidence 9987653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.48 E-value=1.9e-07 Score=74.11 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=52.1
Q ss_pred CceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCcccccccEEEEec-ceeeeEEEEeCHHHHHHHhCCCC--eE
Q 044682 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDSISCSYG-RHINGFAAILEEEHAQQLAKHPE--VL 99 (755)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~~g~s~~l~~~~~~~L~~~p~--V~ 99 (755)
..+|||.||+.... ...+.|..++...- ..+.+.|. +.|+||+++|+++.++.|+++|+ |.
T Consensus 2 aG~YIVvlK~~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVSE---------DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCCH---------HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCCH---------HHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 46899999997653 44456666666543 34567776 68999999999999999998665 99
Q ss_pred EEEeCc
Q 044682 100 SIFLDE 105 (755)
Q Consensus 100 ~V~~~~ 105 (755)
+||+|+
T Consensus 66 yVE~D~ 71 (72)
T d1v5ib1 66 SIEEDH 71 (72)
T ss_dssp EEEECC
T ss_pred eECCCC
Confidence 999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0027 Score=58.89 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCC-------------CCC--------------------
Q 044682 399 KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENES-------------LPL-------------------- 444 (755)
Q Consensus 399 ~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-------------~~~-------------------- 444 (755)
.+++|||+|++++.+ +.+|..+++++||.|+|+|.+..+.... ..+
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~ 138 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 138 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence 578999999999999 9999999999999999999874421100 000
Q ss_pred -CCcccEEEeeHhhHHHHHHHHh
Q 044682 445 -PYHLPTSLVEFDDAQSIIAYNN 466 (755)
Q Consensus 445 -~~~~p~~~i~~~~g~~l~~~~~ 466 (755)
--.||+.-|+..+++.|++.+.
T Consensus 139 ~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 139 GLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcCCeeeCCHHHHHHHHHHcC
Confidence 1247999999999999988664
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.00 E-value=0.016 Score=48.12 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCCCeEEeecCCceEEEEEEEEecCCCCc-eEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEeccCCCCCCCCCC
Q 044682 661 FNYPTIAIPDLNESVTITRRVKNVGTHNS-SYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEK 739 (755)
Q Consensus 661 ln~psi~~~~~~~~~~~~~tv~nv~~~~~-~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~ 739 (755)
+..|++.+.- +...+++.+|+|.|+... .-++.++.|.|=++ +|....+ ++||++++++++++. ..... +.
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L-~pG~s~~~~~~Vt~p---~~a~~-G~ 77 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPL-MPGRQAKGQVTITVP---AGTTP-GR 77 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCB-CTTCEEEEEEEEECC---TTCCC-EE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--cCcceee-CCCCcEEEEEEEECC---CCCCC-ce
Confidence 4557777754 468999999999997654 35788899999665 5666667 899999999999983 23333 66
Q ss_pred eEEE
Q 044682 740 YIFG 743 (755)
Q Consensus 740 ~~~g 743 (755)
|...
T Consensus 78 Y~i~ 81 (103)
T d1w8oa1 78 YRVG 81 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.017 Score=55.14 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCC
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPK 435 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~ 435 (755)
.-+++|||+|++++.+ +.+|..+|++.||+|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 3589999999999999 9999999999999999999974
|