Citrus Sinensis ID: 044683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFFQPH
Secondary Structure (PSIPRED)
cccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHccccccccEEccccccccccccHHHHHHHccccEEEcccccccEEEcccccccccccHHHHcccccccccccccEEEccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccEEEccccEEEEEccHHHccccHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccEEcccHHHcccHHHHHccccccccccHHHcccccHHHHHHcccEEEcccccccccccHHHccHHHHHHccccccccc
Coil and Loop (DISEMBL)
MTSLKVldassnqltgnispnLCELVLLRELyidnndlrghipVEIGTYLLVFIHLNLsrnafngsipssffDMKMLKSLDIshnqltgeipermatgcFSLEILALSNNslqglylsdnrlfgriprwLGNLLALEDimmpnnnlqgpipieFCQLELLTIldlsnntifgtlpscfrtssfvkkqdrrtvgkpcgslgldilphlfrrrprrlavEGFDLVLelpqivcglptcfalgklffqph
Flexible Loop (DISEMBL)
mtslkvldassnqltgnispNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCfrtssfvkkqdrrtvgkpcgslgldilphlfRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFFQPH
Low Complexity Region (SEG)
MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFrrrprrLAVEGFDLVLELPQIVCGLPTCFALGKLFFQPH
Disordered region (IsUnstruct)
***************GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFF***
Disordered Region (DISOPRED)
MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFFQ**
Disordered Region (DISEMBL)
MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFFQPH
Disordered Region (DISPRO)
*TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALGKLFFQPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9LYN8	1192	Leucine-rich repeat recep	yes	no	0.753	0.156	0.348	7e-23
Q9FL28	1173	LRR receptor-like serine/	no	no	0.708	0.149	0.369	3e-22
Q00874	372	DNA-damage-repair/tolerat	no	no	0.712	0.473	0.340	2e-21
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.732	0.151	0.37	1e-20
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.700	0.148	0.361	1e-19
Q6XAT2	967	LRR receptor-like serine/	no	no	0.712	0.182	0.359	1e-19
Q9LHP4	1141	Receptor-like protein kin	no	no	0.700	0.151	0.359	1e-19
C0LGV1	1135	LRR receptor-like serine/	no	no	0.688	0.149	0.365	1e-19
Q9SCT4	836	Probably inactive leucine	no	no	0.704	0.208	0.354	1e-19
Q9LJF3	1164	Receptor-like protein kin	no	no	0.700	0.148	0.371	3e-19

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 15/201 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L +LD S N LTG+I   +   + L+ L + NN L GHIP   G  L   + LNL++
Sbjct: 627 LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG-LLGSLVKLNLTK 685

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N  +G +P+S  ++K L  +D+S N L+GE+   ++T              L GLY+  N
Sbjct: 686 NKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELST-----------MEKLVGLYIEQN 734

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS---C 177
           +  G IP  LGNL  LE + +  N L G IP + C L  L  L+L+ N + G +PS   C
Sbjct: 735 KFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVC 794

Query: 178 FRTSSFVKKQDRRTVGKPCGS 198
              S  +   ++   G+  GS
Sbjct: 795 QDPSKALLSGNKELCGRVVGS 815

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 102/192 (53%), Gaps = 17/192 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L+ L A  N LTG I  ++     L+ L + +N + G IP   G   L FI  ++ R
Sbjct: 383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFI--SIGR 440

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N F G IP   F+   L++L ++ N LTG +   +      L IL +S NSL G      
Sbjct: 441 NHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGK-LQKLRILQVSYNSLTGPIPREI 499

Query: 115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                   LYL  N   GRIPR + NL  L+ + M +N+L+GPIP E   ++LL++LDLS
Sbjct: 500 GNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLS 559

Query: 167 NNTIFGTLPSCF 178
           NN   G +P+ F
Sbjct: 560 NNKFSGQIPALF 571

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 12/188 (6%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + SL++LD + N++TG I   + +L  L  L +  N + G IP  + T L+   HL L+ 
Sbjct: 134 LASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASL-TSLIELKHLELTE 192

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N   G IP+ F  +KML  + +  N+LTG IPE ++     +E LA        L LS N
Sbjct: 193 NGITGVIPADFGSLKMLSRVLLGRNELTGSIPESIS----GMERLA-------DLDLSKN 241

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT 180
            + G IP W+GN+  L  + +  N+L GPIP        L + +LS N + GT+P  F +
Sbjct: 242 HIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGS 301

Query: 181 SSFVKKQD 188
            +++   D
Sbjct: 302 KTYLVSLD 309

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 19/200 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
            SL  LD SSN  +G I PNLC+     L+ELY+ NN   G IP  + +     + L+LS
Sbjct: 390 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLS 448

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG----- 114
            N  +G+IPSS   +  L+ L +  N L GEIP+ +     +LE L L  N L G     
Sbjct: 449 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSG 507

Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                    + LS+NRL G IP+W+G L  L  + + NN+  G IP E      L  LDL
Sbjct: 508 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 567

Query: 166 SNNTIFGTLPSC-FRTSSFV 184
           + N   GT+P+  F+ S  +
Sbjct: 568 NTNLFNGTIPAAMFKQSGKI 587

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 99/191 (51%), Gaps = 18/191 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELV---LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
           ++L+VLD SSN  TGN+    C L    +L ++ I NN L G +P+E+G        ++L
Sbjct: 375 SNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGK-CKSLKTIDL 433

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG---- 114
           S N   G IP   + +  L  L +  N LTG IPE +     +LE L L+NN L G    
Sbjct: 434 SFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE 493

Query: 115 ----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                     + LS NRL G+IP  +GNL  L  + + NN+L G +P +    + L  LD
Sbjct: 494 SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLD 553

Query: 165 LSNNTIFGTLP 175
           L++N + G LP
Sbjct: 554 LNSNNLTGDLP 564

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           M +L VLD S N+LTG I P L  L    +LY+  N L G IP E+G  +    +L L+ 
Sbjct: 287 MQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGN-MSRLSYLQLND 345

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N   G IP     ++ L  L++++N L G IP  +++ C +L    +  N L G      
Sbjct: 346 NELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISS-CAALNQFNVHGNFLSGAVPLEF 404

Query: 115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                   L LS N   G+IP  LG+++ L+ + +  NN  G IP+    LE L IL+LS
Sbjct: 405 RNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLS 464

Query: 167 NNTIFGTLPSCF 178
            N + GTLP+ F
Sbjct: 465 RNHLNGTLPAEF 476

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 16/189 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           T L+ LD S N LTG I   L  L  L +L + +N L G IP EIG      + L L  N
Sbjct: 418 TDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGN-CSSLVRLRLGFN 476

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
              G IPS    +K +  LD S N+L G++P+ + + C  L+++ LSNNSL+G       
Sbjct: 477 RITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGS-CSELQMIDLSNNSLEGSLPNPVS 535

Query: 115 -------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
                  L +S N+  G+IP  LG L++L  +++  N   G IP        L +LDL +
Sbjct: 536 SLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGS 595

Query: 168 NTIFGTLPS 176
           N + G +PS
Sbjct: 596 NELSGEIPS 604

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 100/186 (53%), Gaps = 16/186 (8%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
           L+ LD S N LTG++   L +L  L +L + +N + G IP+EIG      + L L  N  
Sbjct: 421 LQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGN-CTSLVRLRLVNNRI 479

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--------- 114
            G IP     ++ L  LD+S N L+G +P  ++  C  L++L LSNN+LQG         
Sbjct: 480 TGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISN-CRQLQMLNLSNNTLQGYLPLSLSSL 538

Query: 115 -----LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
                L +S N L G+IP  LG+L++L  +++  N+  G IP        L +LDLS+N 
Sbjct: 539 TKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNN 598

Query: 170 IFGTLP 175
           I GT+P
Sbjct: 599 ISGTIP 604

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 35/209 (16%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG-TYLLVFIHL------ 56
           L+ LD SSNQLTG I P+L E   L  L +  N L G +PV +  +Y L F+ L      
Sbjct: 168 LQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNNLS 227

Query: 57  -----------------NLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGC 99
                            NL  N F+G++P S     +L+ + ISHNQL+G IP      C
Sbjct: 228 GSIPDFFVNGSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRE----C 283

Query: 100 FSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
             L         LQ L  S N + G IP    NL +L  + + +N+L+GPIP    +L  
Sbjct: 284 GGLP-------HLQSLDFSYNSINGTIPDSFSNLSSLVSLNLESNHLKGPIPDAIDRLHN 336

Query: 160 LTILDLSNNTIFGTLPSCFRTSSFVKKQD 188
           LT L+L  N I G +P      S +KK D
Sbjct: 337 LTELNLKRNKINGPIPETIGNISGIKKLD 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 18/191 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCEL---VLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
           ++L+VLD SSN+ TG +    C L    +L +L I NN L G +PVE+G        ++L
Sbjct: 375 SNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGK-CKSLKTIDL 433

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG---- 114
           S NA  G IP   + +  L  L +  N LTG IPE +     +LE L L+NN L G    
Sbjct: 434 SFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPE 493

Query: 115 ----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                     + LS N L G IP  +G L  L  + + NN+L G IP E    + L  LD
Sbjct: 494 SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLD 553

Query: 165 LSNNTIFGTLP 175
           L++N + G LP
Sbjct: 554 LNSNNLTGNLP 564

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
255581263	912	serine-threonine protein kinase, plant-t	0.744	0.201	0.452	1e-40
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.724	0.122	0.400	2e-30
296082108	975	unnamed protein product [Vitis vinifera]	0.663	0.168	0.425	4e-26
224142501	561	predicted protein [Populus trichocarpa]	0.728	0.320	0.407	1e-24
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.688	0.136	0.413	6e-24
224142481	781	predicted protein [Populus trichocarpa]	0.797	0.252	0.398	7e-24
60327198	991	Hcr2-p1.2 [Solanum pimpinellifolium]	0.753	0.187	0.405	8e-24
60327200	991	Hcr2-p1.1 [Solanum pimpinellifolium]	0.753	0.187	0.405	8e-24
298710880	1168	LRR-GTPase of the ROCO family [Ectocarpu	0.696	0.147	0.410	1e-23
359484714	862	PREDICTED: probable LRR receptor-like se	0.712	0.204	0.369	1e-23

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/221 (45%), Positives = 131/221 (59%), Gaps = 37/221 (16%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           T L++LD  +N L+G++   L   V L  L I NN +  HIP+EIGT+L     LN+S N
Sbjct: 374 TRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSN 433

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
            F+GSIPSSF +M  L+ LD+S+NQL+G IPE +ATGCFSL  L LSNNSLQG       
Sbjct: 434 GFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQF 493

Query: 115 ------------------------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNN 144
                                         + LSDN L G IP W+GNL  L+++++ NN
Sbjct: 494 NLTNLWWLELDKNHFSGRIPKSLSKSALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNN 553

Query: 145 NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVK 185
            L+GPIP+EFCQL  L +LDL+NN++ G LPSC   SS + 
Sbjct: 554 RLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIH 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/217 (40%), Positives = 116/217 (53%), Gaps = 38/217 (17%)

Query: 2    TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            T L+ L+  +N LTG         +    + I NN L+G +P  I   L   + LN+SRN
Sbjct: 893  TRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRN 952

Query: 62   AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
            +F GSIPS F  M+ L  LD+S+N  TG IPE +A GC SLE L LS N L G       
Sbjct: 953  SFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVS 1011

Query: 115  ------------------------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNN 144
                                          LY+S N + G++P W+GN+  L  ++MPNN
Sbjct: 1012 NLPSLRHLELDDNHFSGKIPDLSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNN 1071

Query: 145  NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS 181
            +L+GPIP+EFC L+ L +LDLSNN + G+LPSCF  S
Sbjct: 1072 SLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPS 1108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082108|emb|CBI21113.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 17/181 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           T L+ L+  +N LTG         +    + I NN L+G +P  I   L   + LN+SRN
Sbjct: 416 TRLEELNLKNNSLTGYFHLPYRPHIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRN 475

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
           +F GSIPS F  M+ L  LD+S+N  TG IPE +A GC SLE L LS N L G       
Sbjct: 476 SFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVS 534

Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                    L +S N + G++P W+GN+  L  ++MPNN+L+GPIP+EFC L+ L +LDL
Sbjct: 535 NLPSLRHLELDVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDL 594

Query: 166 S 166
           S
Sbjct: 595 S 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142501|ref|XP_002324595.1| predicted protein [Populus trichocarpa] gi|222866029|gb|EEF03160.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 108/194 (55%), Gaps = 14/194 (7%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           T L+ L   +N L+G+       LV L  L I  N ++  IP+EIG      + LNLS+N
Sbjct: 14  TKLEKLYLVNNSLSGSFQLANHSLVRLSHLDISRNHIQNQIPIEIGACFPRLVFLNLSKN 73

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
            F+GSIPSS  +M +L+ LD+S+N L+G IPE++   C SL +L LSNN L+G       
Sbjct: 74  NFSGSIPSSISNMSLLEVLDLSNNGLSGNIPEQLVENCLSLGVLMLSNNYLKGQLFWKNF 133

Query: 115 -------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
                  L L  N+L G +P  L N  AL+ + +  NNL G IP     +  L  LDLS 
Sbjct: 134 NLTYLTELILRGNQLTGILPNSLSNCSALQALDVSLNNLSGKIPRWIGYMSSLQYLDLSE 193

Query: 168 NTIFGTLPSCFRTS 181
           N +FG+LPS F +S
Sbjct: 194 NNLFGSLPSNFCSS 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 105/186 (56%), Gaps = 16/186 (8%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
           L+ L  S NQ TG I   +  L  L ELY+  N L G IP EIG    + I L LS N  
Sbjct: 210 LRGLSLSFNQFTGGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSKLNI-LQLSSNGI 268

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------- 110
           +G IP+  F++  L+ +D S+N LTGEIP  ++  C  L +L+LS N             
Sbjct: 269 SGPIPTEIFNISSLQEIDFSNNSLTGEIPSNLSH-CRELRVLSLSFNQFTGGIPQAIGSL 327

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
            +L+GLYLS N+L G IPR +GNL  L  + + +N + GPIP E   +  L I+D SNN+
Sbjct: 328 SNLEGLYLSYNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFNISSLQIIDFSNNS 387

Query: 170 IFGTLP 175
           + G+LP
Sbjct: 388 LSGSLP 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 115/216 (53%), Gaps = 19/216 (8%)

Query: 2   TSLKVLDASSNQLTGNIS-PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           T L+ L   ++ L+G++  PN   + L R L I  N ++  IP +IG Y      LNLSR
Sbjct: 225 TKLEALYLVNSSLSGSLQLPNDSHVNLSR-LDISRNHIQNQIPTKIGAYFPWLEFLNLSR 283

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N F+GSIPSS  +M  L  LD+S+N L+G IPE++  GC SL  L LSNN L+G      
Sbjct: 284 NYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRS 343

Query: 115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                   L LS N+L G +P  L N   LE + +  NNL G IP     +  L  LDLS
Sbjct: 344 FNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLS 403

Query: 167 NNTIFGTLPSCF---RTSSFVKKQDRRTVGKPCGSL 199
            N ++G+LPS F   RT + V     +  G   G+L
Sbjct: 404 ENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSLIGAL 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327198|gb|AAX19022.1| Hcr2-p1.2 [Solanum pimpinellifolium]

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 110/202 (54%), Gaps = 16/202 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + SL  LD S N L G+I  +L  L  L  LY+ NN L G IP EIG YL    +L+L  
Sbjct: 406 LRSLTYLDLSENALNGSIPASLGNLNNLFMLYLYNNQLSGSIPEEIG-YLRSLTYLDLKE 464

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL-------- 112
           NA NGSIP+S  ++  L  L + +NQL+G IPE +     SL  L L NNSL        
Sbjct: 465 NALNGSIPASLGNLNNLSRLYLYNNQLSGSIPEEIGY-LSSLTNLYLGNNSLNGLIPASF 523

Query: 113 ------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                 Q L+L+DN L G IP ++ NL +LE + MP NNL+G +P     +  L +L +S
Sbjct: 524 GNMRNLQALFLNDNNLIGEIPSFVCNLTSLELLYMPRNNLKGKVPQCLGNISDLLVLSMS 583

Query: 167 NNTIFGTLPSCFRTSSFVKKQD 188
           +N+  G LPS     + +K  D
Sbjct: 584 SNSFSGELPSSISNLTSLKILD 605

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327200|gb|AAX19023.1| Hcr2-p1.1 [Solanum pimpinellifolium]

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 110/202 (54%), Gaps = 16/202 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + SL  LD S N L G+I  +L  L  L  LY+ NN L G IP EIG YL    +L+L  
Sbjct: 406 LRSLTYLDLSENALNGSIPASLGNLNNLFMLYLYNNQLSGSIPEEIG-YLRSLTYLDLKE 464

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL-------- 112
           NA NGSIP+S  ++  L  L + +NQL+G IPE +     SL  L L NNSL        
Sbjct: 465 NALNGSIPASLGNLNNLSRLYLYNNQLSGSIPEEIGY-LSSLTNLYLGNNSLNGLIPASF 523

Query: 113 ------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                 Q L+L+DN L G IP ++ NL +LE + MP NNL+G +P     +  L +L +S
Sbjct: 524 GNMRNLQALFLNDNNLIGEIPSFVCNLTSLELLYMPRNNLKGKVPQCLGNISDLLVLSMS 583

Query: 167 NNTIFGTLPSCFRTSSFVKKQD 188
           +N+  G LPS     + +K  D
Sbjct: 584 SNSFSGELPSSISNLTSLKILD 605

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298710880|emb|CBJ26389.1| LRR-GTPase of the ROCO family [Ectocarpus siliculosus]

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/190 (41%), Positives = 104/190 (54%), Gaps = 18/190 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +LK LD S N+L G I P L +L  LREL +  N L G IPVE+G  L V  +L+L  
Sbjct: 164 LGALKTLDLSYNKLEGPIPPALGKLAALRELNLGENQLSGPIPVELGR-LAVLEYLSLRG 222

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS-LEILALSNNSLQG----- 114
           N   G IP     ++ L++L ++ N LTG IP+ +  G  S LE+L L++NSL G     
Sbjct: 223 NELTGPIPKELGALRRLETLWLNDNSLTGPIPKEL--GALSRLEMLWLNDNSLTGRIPPE 280

Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                    L L +N+L G IP  LGNL AL+D+ +  N L GPIP E   L  L  L L
Sbjct: 281 LGALSELQVLALHNNKLTGHIPPQLGNLGALQDLYLSRNKLDGPIPSELGHLSALKELIL 340

Query: 166 SNNTIFGTLP 175
             N + G +P
Sbjct: 341 YGNQLSGLIP 350

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 107/214 (50%), Gaps = 38/214 (17%)

Query: 2   TSLKVLDASSNQLTGNIS-PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           T L+ L   SN LTG +  P+  +   +  L   +N + G +P  IG+       LNLSR
Sbjct: 296 TKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLNLSR 355

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           NA  G+IPSS  DM+ L SLD+S+N L+G++PE M  GC SL +L LSNNSL G      
Sbjct: 356 NALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTLPTKS 415

Query: 115 -------------------------------LYLSDNRLFGRIPRWLGNLLALEDIMMPN 143
                                          L +S N L+G+IP W+G+   L  + +  
Sbjct: 416 NLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLWGQIPNWIGDFSVLSTLSLSR 475

Query: 144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC 177
           N+L G +P   C+L  L  LDLS+N I  TLP C
Sbjct: 476 NHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPC 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.744	0.184	0.375	2.5e-24
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.753	0.156	0.353	2.3e-23
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.712	0.473	0.340	6.1e-23
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.708	0.149	0.369	7.8e-23
TAIR|locus:2052367	462	RLP29 "receptor like protein 2	0.720	0.385	0.350	6.8e-22
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.659	0.166	0.367	8.9e-22
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.716	0.147	0.377	1.2e-21
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.692	0.150	0.363	3e-21
TAIR|locus:2019652	302	RLP16 "receptor like protein 1	0.712	0.582	0.350	3e-21
TAIR|locus:2181042	967	AT5G01890 [Arabidopsis thalian	0.732	0.187	0.368	3.8e-21

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 75/200 (37%), Positives = 108/200 (54%)

Query:     2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
             T L V+   +N  TGNI      L  L  L I NN L G IP  IG    +F  L LS N
Sbjct:   525 TRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFA-LQLSNN 583

Query:    62 AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
                G IP+S F++  L+ LD+S N+L+G+IP  +++  +   +L L NN+L G       
Sbjct:   584 MLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSS-IYHGAVLLLQNNNLSGVIPDTLL 642

Query:   115 -----LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
                  L L +NRL G +P ++ N   +  +++  NN  G IP +FC L  + +LDLSNN 
Sbjct:   643 LNVIVLDLRNNRLSGNLPEFI-NTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNK 701

Query:   170 IFGTLPSCFRTSSF-VKKQD 188
               G++PSC   +SF ++K D
Sbjct:   702 FNGSIPSCLSNTSFGLRKGD 721

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 71/201 (35%), Positives = 107/201 (53%)

Query:     1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +T+L +LD S N LTG+I   +   + L+ L + NN L GHIP   G  L   + LNL++
Sbjct:   627 LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGL-LGSLVKLNLTK 685

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
             N  +G +P+S  ++K L  +D+S N L+GE+   ++T    +E        L GLY+  N
Sbjct:   686 NKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELST----ME-------KLVGLYIEQN 734

Query:   121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS---C 177
             +  G IP  LGNL  LE + +  N L G IP + C L  L  L+L+ N + G +PS   C
Sbjct:   735 KFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVC 794

Query:   178 FRTSSFVKKQDRRTVGKPCGS 198
                S  +   ++   G+  GS
Sbjct:   795 QDPSKALLSGNKELCGRVVGS 815

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 64/188 (34%), Positives = 99/188 (52%)

Query:     1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             + SL++LD + N++TG I   + +L  L  L +  N + G IP  + T L+   HL L+ 
Sbjct:   134 LASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASL-TSLIELKHLELTE 192

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
             N   G IP+ F  +KML  + +  N+LTG IPE ++     +E LA        L LS N
Sbjct:   193 NGITGVIPADFGSLKMLSRVLLGRNELTGSIPESIS----GMERLA-------DLDLSKN 241

Query:   121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT 180
              + G IP W+GN+  L  + +  N+L GPIP        L + +LS N + GT+P  F +
Sbjct:   242 HIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGS 301

Query:   181 SSFVKKQD 188
              +++   D
Sbjct:   302 KTYLVSLD 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 71/192 (36%), Positives = 102/192 (53%)

Query:     1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +T+L+ L A  N LTG I  ++     L+ L + +N + G IP   G   L FI  ++ R
Sbjct:   383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFI--SIGR 440

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
             N F G IP   F+   L++L ++ N LTG +   +      L IL +S NSL G      
Sbjct:   441 NHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGK-LQKLRILQVSYNSLTGPIPREI 499

Query:   115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                     LYL  N   GRIPR + NL  L+ + M +N+L+GPIP E   ++LL++LDLS
Sbjct:   500 GNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLS 559

Query:   167 NNTIFGTLPSCF 178
             NN   G +P+ F
Sbjct:   560 NNKFSGQIPALF 571

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2052367 RLP29 "receptor like protein 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 6.8e-22, P = 6.8e-22
 Identities = 68/194 (35%), Positives = 106/194 (54%)

Query:     1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             + SL++L  S N+LTG+I P +  L  L  L +  N L G IP+++G  L   + L+LS 
Sbjct:   164 LKSLQILTLSQNRLTGDIPPAIFSLKSLVHLDLSYNKLTGKIPLQLGN-LNNLVGLDLSY 222

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY---- 116
             N+  G+IP +   + ML+ LD+S N L G IPE +     SL  +ALSNN L+G +    
Sbjct:   223 NSLTGTIPPTISQLGMLQKLDLSSNSLFGRIPEGVEK-LRSLSFMALSNNKLKGAFPKGI 281

Query:   117 ----------LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                       + +N +F  +P  LG L  L+++ + N+   G IP  + +L  L+ L L+
Sbjct:   282 SNLQSLQYFIMDNNPMFVALPVELGFLPKLQELQLENSGYSGVIPESYTKLTNLSSLSLA 341

Query:   167 NNTIFGTLPSCFRT 180
             NN + G +PS F +
Sbjct:   342 NNRLTGEIPSGFES 355

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.9e-22, P = 8.9e-22
 Identities = 65/177 (36%), Positives = 107/177 (60%)

Query:     1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             + +L +L+ SSN L+G I   LC+L  L  +Y+ NN L G IP+E+G    + + L++SR
Sbjct:   320 LLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGL-LDVSR 378

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
             N  +GSIP SF ++  L+ L +  N L+G +P+ +   C +LEIL LS+N+L G      
Sbjct:   379 NNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGK-CINLEILDLSHNNLTGT----- 432

Query:   121 RLFGRIP-RWLGNLLALEDIM-MPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
                  IP   + NL  L+  + + +N+L GPIP+E  +++++  +DLS+N + G +P
Sbjct:   433 -----IPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIP 484

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 74/196 (37%), Positives = 100/196 (51%)

Query:     3 SLKVLDASSNQLTGNISPNLCELV--LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             SL  LD SSN  +G I PNLC+     L+ELY+ NN   G IP  +       + L+LS 
Sbjct:   391 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSF 449

Query:    61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
             N  +G+IPSS   +  L+ L +  N L GEIP+ +     +LE L L  N L G      
Sbjct:   450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGL 508

Query:   115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                     + LS+NRL G IP+W+G L  L  + + NN+  G IP E      L  LDL+
Sbjct:   509 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query:   167 NNTIFGTLPSC-FRTS 181
              N   GT+P+  F+ S
Sbjct:   569 TNLFNGTIPAAMFKQS 584

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 68/187 (36%), Positives = 102/187 (54%)

Query:     3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA 62
             +L+ LD S N LTG++   L +L  L +L + +N + G IP+EIG    + + L L  N 
Sbjct:   420 NLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSL-VRLRLVNNR 478

Query:    63 FNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-------- 114
               G IP     ++ L  LD+S N L+G +P  ++  C  L++L LSNN+LQG        
Sbjct:   479 ITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISN-CRQLQMLNLSNNTLQGYLPLSLSS 537

Query:   115 ------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
                   L +S N L G+IP  LG+L++L  +++  N+  G IP        L +LDLS+N
Sbjct:   538 LTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSN 597

Query:   169 TIFGTLP 175
              I GT+P
Sbjct:   598 NISGTIP 604

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2019652 RLP16 "receptor like protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 68/194 (35%), Positives = 103/194 (53%)

Query:     3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH-LNLSRN 61
             S+  L   +N  TG I   L  L  L  L I NN+L G IP       L  +H L +S N
Sbjct:    70 SILELSMDNNLFTGKIGRGLQSLRSLIMLDISNNNLSGVIPSWFDQ--LQDLHSLQISNN 127

Query:    62 AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
                G +P S F+M  L+ L +S N L+G++P+ ++ G  +L++L L +N+L G       
Sbjct:   128 LLEGEVPISLFNMSSLQLLALSANSLSGDLPQAIS-GYGALKVLLLRDNNLSGVIPDTLL 186

Query:   115 ------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
                   L L +NRL G IP ++ N   +  +++  NNL G IP   C +  + +LDL+NN
Sbjct:   187 GKNIIVLDLRNNRLSGNIPEFI-NTQYIRILLLRGNNLTGSIPRRLCAVRSIHLLDLANN 245

Query:   169 TIFGTLPSCFRTSS 182
              + G++PSC R +S
Sbjct:   246 KLNGSIPSCLRNAS 259

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2181042 AT5G01890 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 73/198 (36%), Positives = 100/198 (50%)

Query:     3 SLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
             SL+V+D S N L+G I     E    LR + + NN L G IPV + +Y     HLNLS N
Sbjct:   117 SLQVVDFSGNNLSGRIPDGFFEQCGSLRSVSLANNKLTGSIPVSL-SYCSTLTHLNLSSN 175

Query:    62 AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
               +G +P   + +K LKSLD SHN L G+IP+ +  G + L  + LS N           
Sbjct:   176 QLSGRLPRDIWFLKSLKSLDFSHNFLQGDIPDGLG-GLYDLRHINLSRNWFSGDVPSDIG 234

Query:   111 ---SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
                SL+ L LS+N   G +P  + +L +   I +  N+L G IP     +  L ILDLS 
Sbjct:   235 RCSSLKSLDLSENYFSGNLPDSMKSLGSCSSIRLRGNSLIGEIPDWIGDIATLEILDLSA 294

Query:   168 NTIFGTLPSCFRTSSFVK 185
             N   GT+P       F+K
Sbjct:   295 NNFTGTVPFSLGNLEFLK 312

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032748001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (883 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (263), Expect = 8e-26
 Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 19/190 (10%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
           +  +D S   ++G IS  +  L  ++ + + NN L G IP +I T      +LNLS N F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS-LEILALSNN------------ 110
            GSIP     +  L++LD+S+N L+GEIP  +  G FS L++L L  N            
Sbjct: 131 TGSIPRGS--IPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             SL+ L L+ N+L G+IPR LG + +L+ I +  NNL G IP E   L  L  LDL  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 169 TIFGTLPSCF 178
            + G +PS  
Sbjct: 247 NLTGPIPSSL 256

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (259), Expect = 3e-25
 Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 22/192 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +TSL+ L  +SNQL G I   L ++  L+ +Y+  N+L G IP EIG  L    HL+L  
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVY 245

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE---ILALSNNSLQG--- 114
           N   G IPSS  ++K L+ L +  N+L+G IP  +    FSL+    L LS+NSL G   
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----FSLQKLISLDLSDNSLSGEIP 301

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                      L+L  N   G+IP  L +L  L+ + + +N   G IP    +   LT+L
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 164 DLSNNTIFGTLP 175
           DLS N + G +P
Sbjct: 362 DLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 1e-22
 Identities = 69/192 (35%), Positives = 98/192 (51%), Gaps = 21/192 (10%)

Query: 3   SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA 62
           +L VLD S+N LTG I   LC    L +L + +N L G IP  +G        + L  N+
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNS 415

Query: 63  FNGSIPSSFFDMKMLKSLDISHNQLTGEIPER---MATGCFSLEILALSNNS-------- 111
           F+G +PS F  + ++  LDIS+N L G I  R   M     SL++L+L+ N         
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP----SLQMLSLARNKFFGGLPDS 471

Query: 112 -----LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                L+ L LS N+  G +PR LG+L  L  + +  N L G IP E    + L  LDLS
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 167 NNTIFGTLPSCF 178
           +N + G +P+ F
Sbjct: 532 HNQLSGQIPASF 543

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 4e-20
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS 66
           LD S+N L G I+    ++  L+ L +  N   G +P   G+  L   +L+LSRN F+G+
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE--NLDLSRNQFSGA 490

Query: 67  IPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRI 126
           +P     +  L  L +S N+L+GEIP+ ++           S   L  L LS N+L G+I
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELS-----------SCKKLVSLDLSHNQLSGQI 539

Query: 127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
           P     +  L  + +  N L G IP     +E L  +++S+N + G+LPS
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 67/197 (34%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTY------------ 49
           +SLKVLD   N L G I  +L  L  L  L + +N L G IP E+G              
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 50  -----------LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG 98
                      L    HL+L  N   G IPSS  ++K L+ L +  N+L+G IP  +   
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--- 280

Query: 99  CFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE 158
            FSL+        L  L LSDN L G IP  +  L  LE + + +NN  G IP+    L 
Sbjct: 281 -FSLQ-------KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 159 LLTILDLSNNTIFGTLP 175
            L +L L +N   G +P
Sbjct: 333 RLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 3e-19
 Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
           L+ LD S+N L+G I  ++     L+ L +  N L G IP  +   L     L L+ N  
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQL 200

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLF 123
            G IP     MK LK + + +N L+GEIP          EI  L+  SL  L L  N L 
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIP---------YEIGGLT--SLNHLDLVYNNLT 249

Query: 124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
           G IP  LGNL  L+ + +  N L GPIP     L+ L  LDLS+N++ G +P
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 12/176 (6%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L  LD S N L+G I   + +L  L  L++ +N+  G IPV + T L     L L  
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWS 341

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N F+G IP +      L  LD+S N LTGEIPE +            S+ +L  L L  N
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-----------SSGNLFKLILFSN 390

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
            L G IP+ LG   +L  + + +N+  G +P EF +L L+  LD+SNN + G + S
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.1 bits (195), Expect = 8e-17
 Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTY--LLVFIHLNL 58
           + +L++L   SN  TG I   L  L  L+ L + +N   G IP  +G +  L V   L+L
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV---LDL 363

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG---- 114
           S N   G IP        L  L +  N L GEIP+ +   C SL  + L +NS  G    
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPS 422

Query: 115 ----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                     L +S+N L GRI     ++ +L+ + +  N   G +P +    + L  LD
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLD 481

Query: 165 LSNNTIFGTLPSCFRTSS 182
           LS N   G +P    + S
Sbjct: 482 LSRNQFSGAVPRKLGSLS 499

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 2/111 (1%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
           L+ LD S NQ +G +   L  L  L +L +  N L G IP E+ +     + L+LS N  
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDLSHNQL 535

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
           +G IP+SF +M +L  LD+S NQL+GEIP+ +     SL  + +S+N L G
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 12/104 (11%)

Query: 31  LYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGE 90
           L +DN  LRG IP +I + L     +NLS N+  G+IP S   +  L+ LD+S+N   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 91  IPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLL 134
           IPE       SL  L     SL+ L L+ N L GR+P  LG  L
Sbjct: 482 IPE-------SLGQLT----SLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 12  NQ-LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS 70
           NQ L G I  ++ +L  L+ + +  N +RG+IP  +G+   + + L+LS N+FNGSIP S
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-LDLSYNSFNGSIPES 485

Query: 71  FFDMKMLKSLDISHNQLTGEIP 92
              +  L+ L+++ N L+G +P
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171
           LQ + LS N + G IP  LG++ +LE + +  N+  G IP    QL  L IL+L+ N++ 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 172 GTLPS 176
           G +P+
Sbjct: 504 GRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           L L      G IP+    ++ L+S+++S N + G IP  + +             SL+ L
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-----------ITSLEVL 471

Query: 116 YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP 151
            LS N   G IP  LG L +L  + +  N+L G +P
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +TSL+VLD S N   G+I  +L +L  LR L ++ N L G +P  +G  LL     N + 
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Query: 61  NAFNGSIP 68
           NA    IP
Sbjct: 525 NAGLCGIP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS 66
           LD S NQL+G I  +  E+ +L +L +  N L G IP  +G  +   + +N+S N  +GS
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVNISHNHLHGS 586

Query: 67  IPSS 70
           +PS+
Sbjct: 587 LPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
           GL L +  L G IP  +  L  L+ I +  N+++G IP     +  L +LDLS N+  G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 174 LP 175
           +P
Sbjct: 482 IP 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
            L+LS N        +F  +  LK LD+S N LT  I     +G  SL  L LS N+L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
          L+ L + NN L   IP      L     L+LS N      P +F  +  L+SLD+S N L
Sbjct: 2  LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           T+L  LD  +N +T +I P +  L   L+EL + +N +   +P  +   L    +L+LS 
Sbjct: 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N  +  +P    ++  L +LD+S N+++ ++P  +       E+   +N+ ++ L    N
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSN 230

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171
                    L NL  LE      NN    +P     L  L  LDLSNN I 
Sbjct: 231 ---------LKNLSGLELS----NNKLEDLPESIGNLSNLETLDLSNNQIS 268

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.72
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
PLN03150	623	hypothetical protein; Provisional	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PLN03150	623	hypothetical protein; Provisional	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.03
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG4308	478	consensus LRR-containing protein [Function unknown	95.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.39
smart00370	26	LRR Leucine-rich repeats, outliers.	94.39
smart00370	26	LRR Leucine-rich repeats, outliers.	94.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.92
KOG4308	478	consensus LRR-containing protein [Function unknown	92.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.48
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.73
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.7
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.8
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=8e-28  Score=223.16  Aligned_cols=237  Identities=32%  Similarity=0.450  Sum_probs=129.2

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..++.+++|++|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            45566666666665555666666666666666666655555555544 55566666655555555555555555555555


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC--------------c------------------------cEEEccCCcCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------L------------------------QGLYLSDNRLF  123 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l------------------------~~l~l~~n~~~  123 (247)
                      +++|.+.+.+|..+. .+++|+.|++++|.              +                        +.|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            555555544444433 24555555554442              2                        24445555554


Q ss_pred             CCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-
Q 044683          124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-  199 (247)
Q Consensus       124 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-  199 (247)
                      +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..   ...|++++|.+++.+|..+ 
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence            445555555555555555555555555555555555555555555555555544332   2256666666665554432 


Q ss_pred             ------eeee--------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          200 ------GLDI--------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       200 ------~l~l--------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                            .+++        +|.++..  +|+.|++++|++++.+|..+..+++|+.++
T Consensus       378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence                  1121        4555554  677777777777766666666666555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.5e-27  Score=221.44  Aligned_cols=235  Identities=33%  Similarity=0.480  Sum_probs=195.6

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..|.  ..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+..|..+..+++|++|
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            46899999999999987775  45889999999999999888888876 8999999999999988899999999999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ++++|.+.+.+|..+. .+++|+.+++++|.              ++.|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus       194 ~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        194 TLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             eccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            9999999878887765 49999999999884              55899999999999999999999999999999999


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchh
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLF  208 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~  208 (247)
                      ++.+|..+..+++|++|++++|.+++..|..+..   ...|++++|.+++..|..+       .+++        +|.++
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            9888989999999999999999998888876643   3388888888887766543       2322        56666


Q ss_pred             cC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          209 RR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       209 ~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      ..  +|+.|++++|++++.+|..++.+++|+.+
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            55  77777777777777777666655555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=7.2e-26  Score=188.34  Aligned_cols=187  Identities=28%  Similarity=0.290  Sum_probs=117.7

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.|+|.+|.|+.+-.+.+..++.|+.|||+.|.|+ ++|..-+..-.++++|++++|+|+......|..+.+|.+|.++
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            555666666666555556666666666666666666 5555444323456666666666665555666666666666666


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCcc--------------------------------------EEEccCCcCCCC
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQ--------------------------------------GLYLSDNRLFGR  125 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------------------------------~l~l~~n~~~~~  125 (247)
                      .|+++ .+|..+|..+++|+.|++..|.++                                      .++++.|++...
T Consensus       206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            66666 666666666666666666666332                                      566666666655


Q ss_pred             CchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683          126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTV  192 (247)
Q Consensus       126 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~  192 (247)
                      -..++..++.|++|++++|.|..+.++++..+++|++|++++|+|+...+..|...+   .|.|++|+++
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            556666677777777777777766667777777777777777777655555554322   4555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=6.6e-25  Score=182.65  Aligned_cols=191  Identities=21%  Similarity=0.176  Sum_probs=130.1

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ++++|+|+.|.|+..-.+.|.++..|..|.|+.|+++ .+|...|+.+++|+.|++..|++.-.-...|.++++|+.+.+
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            3566666666666555666666666666666666666 666666655666666666666665333455666666666666


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ..|.+. .+.++.|-.+..++++++..|+++              .|+++.|.|....++.|.-+++|+.|+|+.|.++.
T Consensus       253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            666666 666666667788888888888544              67888888887777888888888888888888886


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccC
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKP  195 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~  195 (247)
                      ..+.+|..+..|++|++++|.++......|...   +.|||++|.++..+
T Consensus       332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            666777777777777777777764444444433   27777777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=9.4e-24  Score=177.52  Aligned_cols=230  Identities=26%  Similarity=0.301  Sum_probs=127.1

Q ss_pred             CCCcEEEccCCcccc-ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +.||.+++.+|.+.. -+|..+..+..|+.|++++|++. ++|..+.. -+++..|++++|.|..+.-..|.++..|-+|
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            455666666665532 34566666666677777777666 66666654 4566666666666663322344556666666


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCC-CCCchhhhcccCcCeeeCcCCc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLF-GRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      |+++|++. .+|..+.+ +.+|+.|.+++|.              ++.|.+++.+-+ ..+|.++..+.+|..++++.|.
T Consensus       156 DLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             ccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            66666665 66666554 6666666666662              224444443322 2445555555566666666666


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcc--------------eeee--ecc
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSL--------------GLDI--LPH  206 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~--------------~l~l--~p~  206 (247)
                      +. ..|+.+.++++|+-|++++|.|+ ....+..   ....|++|.|+++. +|..+              .|++  +|.
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc
Confidence            55 55566666666666666666655 2222211   12255555555552 22221              1111  555


Q ss_pred             hhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          207 LFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       207 ~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      .++.  .|..+..++|.+. .+|+.+|.|..|+.|
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            5555  5666666666654 566666666655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=6.1e-23  Score=172.69  Aligned_cols=221  Identities=28%  Similarity=0.344  Sum_probs=165.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      .+|++|.+++|.+. .+-..+..++.|+.+++++|++.. -+|..+|+ +..|..||+++|.+. ..|..+....++-.|
T Consensus        55 qkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVL  131 (1255)
T ss_pred             hhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence            35778888888877 455667778888888888888763 57888888 889999999999998 788888888899999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCc-------------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSL-------------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      ++++|.|. .||...+-.+..|-.|++++|++             ++|++++|.+...--..+..+++|++|.+++.+-+
T Consensus       132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             EcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence            99999998 89998888888888999999854             47778887776544455566677777888776554


Q ss_pred             -ccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683          148 -GPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD  221 (247)
Q Consensus       148 -~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~  221 (247)
                       ..+|.++..+.+|+.+|++.|.+. .+|.++...   ..|+||+|.++..-..          ...  ++.+|++|.|+
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~----------~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT----------EGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc----------HHHHhhhhhhccccch
Confidence             347888889999999999999998 888877533   3999999998842111          111  45555555555


Q ss_pred             eeecCCccccCCCchhh
Q 044683          222 LVLELPQIVCGLPTCFA  238 (247)
Q Consensus       222 l~~~~~~~~~~l~~L~~  238 (247)
                      ++ ..|.++|.++.|+.
T Consensus       280 Lt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  280 LT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             hc-cchHHHhhhHHHHH
Confidence            55 34555555544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=1.7e-22  Score=161.71  Aligned_cols=102  Identities=25%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             chhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEeccCCcccccCCCcceeee
Q 044683          127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTVGKPCGSLGLDI  203 (247)
Q Consensus       127 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~~~~~~~l~l  203 (247)
                      |..++.++++..|++++|.+. .+|..++.+..|+++|++.|++. ..|.+.....   .+-.++|++....        
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd--------  497 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD--------  497 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC--------
Confidence            333444444444555544444 34444444444555555555444 3443333222   2223334443322        


Q ss_pred             ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          204 LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       204 ~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                       |+.+..  +|..||+.+|.+. .+|..+++|.+|+.|.
T Consensus       498 -~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  498 -PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE  534 (565)
T ss_pred             -hHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence             222555  8999999999887 6888899988887763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=5.2e-18  Score=150.98  Aligned_cols=190  Identities=25%  Similarity=0.362  Sum_probs=113.5

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .++.|++++|.++ .+|..+.  .+|+.|++++|.++ .+|..+.   .+|+.|++++|.+. .+|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            4666777777666 3444443  36777777777776 6665543   35777777777776 4555543  46777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCcc-----------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ-----------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-----------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  151 (247)
                      ++|.++ .+|..+.   ++|+.|++++|.++           .|++++|.++. +|..+  .++|+.|++++|.++ .+|
T Consensus       270 s~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP  341 (754)
T PRK15370        270 FHNKIS-CLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLP  341 (754)
T ss_pred             cCCccC-ccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCC
Confidence            777776 5665432   36777777777554           34455666553 33322  246777777777776 345


Q ss_pred             hhhhCCCCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeee
Q 044683          152 IEFCQLELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLV  223 (247)
Q Consensus       152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~  223 (247)
                      ..+  .++|+.|++++|+++ .+|..+ .....|++++|.+++ +|.         .+...|+.|++++|+++
T Consensus       342 ~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt~-LP~---------~l~~sL~~LdLs~N~L~  401 (754)
T PRK15370        342 ASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALTN-LPE---------NLPAALQIMQASRNNLV  401 (754)
T ss_pred             hhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCCC-CCH---------hHHHHHHHHhhccCCcc
Confidence            444  257777777777776 344433 244477777777764 222         22224555556666555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=3.3e-20  Score=148.71  Aligned_cols=215  Identities=29%  Similarity=0.403  Sum_probs=111.9

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      +..+.+++|.++ ...+.+..+..+.++++++|++. ..|+.++. +..++.++.+.|++. .+|...+.+.++..++.+
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            344555666555 34444555666666666666665 66666655 555666666666655 455556666666666666


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCcc-------------EEEccCCcCCC----------------------CCch
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQ-------------GLYLSDNRLFG----------------------RIPR  128 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-------------~l~l~~n~~~~----------------------~~~~  128 (247)
                      +|.+. .++.++++ +..+..++..+|+++             .+++.+|.+..                      .+|.
T Consensus       123 ~n~~~-el~~~i~~-~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~  200 (565)
T KOG0472|consen  123 SNELK-ELPDSIGR-LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP  200 (565)
T ss_pred             cccee-ecCchHHH-HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence            66665 55555554 555555555555333             23344444432                      3344


Q ss_pred             hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCC-CC---CCeEeccCCcccccCCCcceeeee
Q 044683          129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF-RT---SSFVKKQDRRTVGKPCGSLGLDIL  204 (247)
Q Consensus       129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~---~~~L~l~~n~~~~~~~~~~~l~l~  204 (247)
                      .++.+.+|+.|++..|++. ..| .|.++..|.+|.++.|.|. .+|... ..   ...||+.+|+++.          +
T Consensus       201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke----------~  267 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE----------V  267 (565)
T ss_pred             hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc----------C
Confidence            4444444444444444444 333 3344444444444444444 222111 11   1155666666554          2


Q ss_pred             cchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          205 PHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       205 p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      |+.+--  +|.+||+|+|.+++ .|-+++++ .|+.+
T Consensus       268 Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFL  302 (565)
T ss_pred             chHHHHhhhhhhhcccCCcccc-CCcccccc-eeeeh
Confidence            332222  67788888888874 56667776 44443

>PLN03210 Resistant to P

Probab=99.74  E-value=6.2e-17  Score=152.14  Aligned_cols=228  Identities=19%  Similarity=0.195  Sum_probs=154.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      .+|+.|+++++.+. .++..+..+++|+.++++++.....+|. +.. +++|++|++++|.....+|..+..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            46778888888877 5677777888888999887654336664 333 78899999988765557888888899999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCC-----------CccEEEccCCcCCCCCchhh--------------------
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNN-----------SLQGLYLSDNRLFGRIPRWL--------------------  130 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-----------~l~~l~l~~n~~~~~~~~~~--------------------  130 (247)
                      +++|.....+|..+  .+++|+.|++++|           +++.|++.+|.+.. +|..+                    
T Consensus       688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        688 MSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence            98864333777654  4778888888776           45677777777652 33221                    


Q ss_pred             ----------hcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCc
Q 044683          131 ----------GNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGS  198 (247)
Q Consensus       131 ----------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~  198 (247)
                                ...++|+.|++++|.....+|..++++++|+.|++++|..-+.+|....  ....|++++|..-..+|..
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence                      1124678888888877667888888999999999988754445565442  3337777776543333321


Q ss_pred             c----eeee-------ecchhcC--CCceEeccCC-eeeecCCccccCCCch
Q 044683          199 L----GLDI-------LPHLFRR--RPRRLAVEGF-DLVLELPQIVCGLPTC  236 (247)
Q Consensus       199 ~----~l~l-------~p~~~~~--~L~~L~l~~n-~l~~~~~~~~~~l~~L  236 (247)
                      .    .|++       +|.++..  +|+.|++++| +++ .+|..++.+++|
T Consensus       845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L  895 (1153)
T PLN03210        845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL  895 (1153)
T ss_pred             ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence            1    2222       6666666  7888888875 555 355544444444

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=2.6e-20  Score=133.50  Aligned_cols=151  Identities=29%  Similarity=0.453  Sum_probs=74.6

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.|.+++|.++ ..|+.++.+.+|++|++.+|+++ ++|..+.. ++.|+.|.++-|++. ..|..|+.+|.|+.||+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            334444444444 34444444444555555555444 44444444 444444444444444 444444444445444444


Q ss_pred             CCcccc-cCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           84 HNQLTG-EIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        84 ~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      +|.+.. .+|..+|- +..|+.+.+++|.+.           .+|..++++++|+.|.+.+|.+- .+|..++.+..|++
T Consensus       111 ynnl~e~~lpgnff~-m~tlralyl~dndfe-----------~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFY-MTTLRALYLGDNDFE-----------ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             ccccccccCCcchhH-HHHHHHHHhcCCCcc-----------cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            444431 23333332 333443333333332           34555666666666666666655 45555666666666


Q ss_pred             EEccCCcCc
Q 044683          163 LDLSNNTIF  171 (247)
Q Consensus       163 L~l~~n~l~  171 (247)
                      |.+++|+++
T Consensus       178 lhiqgnrl~  186 (264)
T KOG0617|consen  178 LHIQGNRLT  186 (264)
T ss_pred             Hhcccceee
Confidence            666666666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=4.4e-17  Score=144.64  Aligned_cols=70  Identities=20%  Similarity=0.114  Sum_probs=34.6

Q ss_pred             CCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc----eeee-------ecchhcC--CCceEeccCCeeeec
Q 044683          159 LLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL----GLDI-------LPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       159 ~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                      +|+.|++++|.++ .+|........|++++|.+++ +|...    .+++       +|..+..  .++.|++++|++++.
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ccceEEecCCccc-CCCCcccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            4555666666665 233333334466666666654 23211    1111       4544444  555666666666555


Q ss_pred             CCccc
Q 044683          226 LPQIV  230 (247)
Q Consensus       226 ~~~~~  230 (247)
                      .+..+
T Consensus       461 ~~~~L  465 (788)
T PRK15387        461 TLQAL  465 (788)
T ss_pred             HHHHH
Confidence            55444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.72  E-value=4.9e-19  Score=141.60  Aligned_cols=226  Identities=20%  Similarity=0.170  Sum_probs=133.1

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCEEec
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .++++|..|.|+...+.+|..+++|++|+|++|.|+ .|.+..|++++++.+|.+.+ |+|+.....+|+.+..++.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456777777777666777777777777777777777 66666666677766655444 7777555556667777776666


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcC--------------------------
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRL--------------------------  122 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~--------------------------  122 (247)
                      .-|.+. -++...+..++++..|.+.+|.++              .+.+..|.+                          
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            666666 566666666666666666666333              223333321                          


Q ss_pred             ----------CCCCchhhhc-ccCcCeeeCcCCcccccCc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEecc
Q 044683          123 ----------FGRIPRWLGN-LLALEDIMMPNNNLQGPIP-IEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQ  187 (247)
Q Consensus       123 ----------~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~  187 (247)
                                ....+..+.. +..+..-..+.+...++.| ..|..+++|+.|++++|++++..+..|....   .|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                      0000111100 0011110111111222222 4577788888888888888877777775433   67777


Q ss_pred             CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      .|++...-..-         |..  .|+.|+|.+|+|+...|..|..+.+|..+.
T Consensus       307 ~N~l~~v~~~~---------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~  352 (498)
T KOG4237|consen  307 RNKLEFVSSGM---------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN  352 (498)
T ss_pred             cchHHHHHHHh---------hhccccceeeeecCCeeEEEecccccccceeeeee
Confidence            77765321111         222  788888888888877777777766665553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=4.3e-19  Score=141.91  Aligned_cols=108  Identities=22%  Similarity=0.232  Sum_probs=97.2

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++||+|||++|.|+.+.|++|.+++.+..|-+.+ |+|+ .+|+..|.++.+++.|.+.-|++......+|..++++..
T Consensus        90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            46799999999999999999999999998877766 9998 999999999999999999999999888899999999999


Q ss_pred             EeccCCcccccCchhHhhcCCCccEEEccCC
Q 044683           80 LDISHNQLTGEIPERMATGCFSLEILALSNN  110 (247)
Q Consensus        80 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  110 (247)
                      |.+.+|.+. .++...+..+.+++.+.+..|
T Consensus       169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             hcccchhhh-hhccccccchhccchHhhhcC
Confidence            999999998 888877777777877777666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=3.8e-17  Score=145.04  Aligned_cols=209  Identities=26%  Similarity=0.273  Sum_probs=151.6

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|+.|++++|.++. +|..   .++|++|++++|.++ .+|..    +++|+.|++++|.++ .+|..+   .+|+.|++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLT-HLPALP---SGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence            57889999998884 5542   478899999999988 77752    457888888888877 456643   45777788


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCc----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCch
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSL----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI  152 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  152 (247)
                      ++|.++ .+|..    .++|+.|++++|.+          +.|++++|.+++ +|..   ..+|+.|++++|+++ .+|.
T Consensus       290 s~N~Lt-~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~  359 (788)
T PRK15387        290 FGNQLT-SLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPT  359 (788)
T ss_pred             cCCccc-ccccc----ccccceeECCCCccccCCCCcccccccccccCcccc-cccc---ccccceEecCCCccC-CCCC
Confidence            888888 67772    45777888877744          367888888874 4532   247899999999998 4554


Q ss_pred             hhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCC--cc-eeee-------ecchhcCCCceEeccCCee
Q 044683          153 EFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCG--SL-GLDI-------LPHLFRRRPRRLAVEGFDL  222 (247)
Q Consensus       153 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~--~~-~l~l-------~p~~~~~~L~~L~l~~n~l  222 (247)
                      ...   +|+.|++++|.++ .+|........|++++|.+++..+.  .+ .|++       +|.... +|+.|++++|++
T Consensus       360 lp~---~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~-~L~~L~Ls~NqL  434 (788)
T PRK15387        360 LPS---ELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPS-GLLSLSVYRNQL  434 (788)
T ss_pred             CCc---ccceehhhccccc-cCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcchh-hhhhhhhccCcc
Confidence            443   5677889999999 4666777788899999999884321  11 3333       554333 788899999999


Q ss_pred             eecCCccccCCCchhhhh
Q 044683          223 VLELPQIVCGLPTCFALG  240 (247)
Q Consensus       223 ~~~~~~~~~~l~~L~~l~  240 (247)
                      + .+|..++++++|+.++
T Consensus       435 t-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        435 T-RLPESLIHLSSETTVN  451 (788)
T ss_pred             c-ccChHHhhccCCCeEE
Confidence            8 5788888888887665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=2.7e-16  Score=140.18  Aligned_cols=196  Identities=22%  Similarity=0.317  Sum_probs=143.3

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +.+.|+++++.++ .+|..+.  +.++.|++++|.++ .+|..++   .+|++|++++|.++ .+|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4578999999988 5666554  47999999999999 8888765   48999999999998 5676553  47999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCc-----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSL-----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  151 (247)
                      ++|.+. .+|..+.   .+|+.|++++|.+           +.|++++|++++ +|..+.  ++|+.|++++|.++ .+|
T Consensus       249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP  320 (754)
T PRK15370        249 SINRIT-ELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP  320 (754)
T ss_pred             cCCccC-cCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence            999998 8888664   4788888888754           467777777763 444332  36777788888777 344


Q ss_pred             hhhhCCCCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccc
Q 044683          152 IEFCQLELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIV  230 (247)
Q Consensus       152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~  230 (247)
                      ..+  .++|+.|++++|.+++ +|..+ .....|++++|+++. +|.         .+...|+.|++++|+++. +|..+
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L~~-LP~---------~lp~~L~~LdLs~N~Lt~-LP~~l  386 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLPPELQVLDVSKNQITV-LPE---------TLPPTITTLDVSRNALTN-LPENL  386 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhcCcccEEECCCCCCCc-CCh---------hhcCCcCEEECCCCcCCC-CCHhH
Confidence            433  3578888888888874 44433 344588888888773 332         222289999999999985 55544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=8.9e-19  Score=152.94  Aligned_cols=218  Identities=24%  Similarity=0.318  Sum_probs=134.0

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|+++++++|.++ ..|+++..+.+|+.+...+|.++ .+|..++. +.+|+.+.+..|.+. .+|....+...|++|++
T Consensus       242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            4778888888888 45688888889999999999887 88888877 778888888888888 66777777889999999


Q ss_pred             cCCcccccCchhHhhcCCC-ccEEEccCC--------------------------------------CccEEEccCCcCC
Q 044683           83 SHNQLTGEIPERMATGCFS-LEILALSNN--------------------------------------SLQGLYLSDNRLF  123 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~-L~~l~l~~n--------------------------------------~l~~l~l~~n~~~  123 (247)
                      ..|.+. .+|...+..... +..+..+.|                                      .|+.|+|++|++.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            999987 777755542222 333333333                                      2224444454444


Q ss_pred             CCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCccee
Q 044683          124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGL  201 (247)
Q Consensus       124 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l  201 (247)
                      ......+.++..|+.|++++|+++ .+|+.+..++.|++|...+|++. ..|....  ..+.+|++.|.++...      
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~------  468 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVT------  468 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhh------
Confidence            333334444445555555555554 34444455555555555555554 3332221  2226677766665321      


Q ss_pred             eeecchhcC-CCceEeccCCeeeecCCccccCCCc
Q 044683          202 DILPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPT  235 (247)
Q Consensus       202 ~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~  235 (247)
                        +|..... +|++||+++|.=....-+.|..+..
T Consensus       469 --l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~  501 (1081)
T KOG0618|consen  469 --LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS  501 (1081)
T ss_pred             --hhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence              3444444 8899999988422233334443333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.7e-18  Score=123.22  Aligned_cols=159  Identities=25%  Similarity=0.391  Sum_probs=135.1

Q ss_pred             ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683           22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS  101 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  101 (247)
                      +..+..++.|.+++|+++ .+|+.+.. +.+|+.|.+++|.++ .+|..+..+++|+.|+++-|++. .+|.++.. +|.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cch
Confidence            445778889999999999 99999987 899999999999999 78999999999999999999998 88988765 999


Q ss_pred             ccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC-
Q 044683          102 LEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT-  180 (247)
Q Consensus       102 L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-  180 (247)
                      |+.+++.+|++.+=         .+|..|..+..|+.|++++|.+. .+|...+++++|+.|.+++|++- ..|..+.. 
T Consensus       104 levldltynnl~e~---------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l  172 (264)
T KOG0617|consen  104 LEVLDLTYNNLNEN---------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL  172 (264)
T ss_pred             hhhhhccccccccc---------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence            99999999888643         45777788889999999999998 88888999999999999999987 55655442 


Q ss_pred             --CCeEeccCCcccccCC
Q 044683          181 --SSFVKKQDRRTVGKPC  196 (247)
Q Consensus       181 --~~~L~l~~n~~~~~~~  196 (247)
                        ...|.+++|+++-.+|
T Consensus       173 t~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             HHHHHHhcccceeeecCh
Confidence              2277888888774333

>PLN03210 Resistant to P

Probab=99.66  E-value=3.8e-15  Score=140.23  Aligned_cols=225  Identities=19%  Similarity=0.191  Sum_probs=147.4

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .|+.|++.++.+. ..|..| ...+|+.|++.++.+. .++..+.. +++|+.++++++.....+|. +..+++|++|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            3556666666555 455555 3567777888887776 67666654 77888888877654335553 667788888888


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCC-------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNN-------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP  149 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  149 (247)
                      ++|.....+|..+. .+++|+.|++++|             .|+.|++++|.....+|..   ..+|+.|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            87654346776654 3778888888765             3456777776544444432   356788888888776 3


Q ss_pred             Cchhh------------------------------hCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCC
Q 044683          150 IPIEF------------------------------CQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPC  196 (247)
Q Consensus       150 ~~~~l------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~  196 (247)
                      +|..+                              ...++|+.|++++|.....+|..+...   ..|++++|..-+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            44321                              113578888888887776788766533   389999986544555


Q ss_pred             Ccc------eeee--------ecchhcCCCceEeccCCeeeecCCccccCCCchhhh
Q 044683          197 GSL------GLDI--------LPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       197 ~~~------~l~l--------~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      ...      .+++        +|.... +++.|++++|.++ .+|..+..+++|+.|
T Consensus       820 ~~~~L~sL~~L~Ls~c~~L~~~p~~~~-nL~~L~Ls~n~i~-~iP~si~~l~~L~~L  874 (1153)
T PLN03210        820 TGINLESLESLDLSGCSRLRTFPDIST-NISDLNLSRTGIE-EVPWWIEKFSNLSFL  874 (1153)
T ss_pred             CCCCccccCEEECCCCCcccccccccc-ccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence            432      2332        333222 7899999999998 578888877777766

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=3.8e-16  Score=127.91  Aligned_cols=216  Identities=20%  Similarity=0.219  Sum_probs=131.5

Q ss_pred             CCcEEEccCCccccc----cCccccCCCCCcEEEccCCceee------cCCchhhhhcccccEEEccCCccccCChHhhh
Q 044683            3 SLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRG------HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF   72 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   72 (247)
                      .|+.++++++.++..    ++..+...+.++.++++++.+.+      .++..+.. +++|++|++++|.+....+..+.
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHHHH
Confidence            467788888877543    34445556677888887776651      11222333 56788888888877655555565


Q ss_pred             cCCC---CCEEeccCCccccc----CchhHhhcC-CCccEEEccCCC------------------ccEEEccCCcCCCC-
Q 044683           73 DMKM---LKSLDISHNQLTGE----IPERMATGC-FSLEILALSNNS------------------LQGLYLSDNRLFGR-  125 (247)
Q Consensus        73 ~l~~---L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~l~l~~n~------------------l~~l~l~~n~~~~~-  125 (247)
                      .+.+   |++|++++|.+.+.    +...+ ..+ ++|+.+++++|.                  ++.+++++|.+++. 
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            5555   88888888777521    11122 224 677777777763                  44677777777642 


Q ss_pred             ---CchhhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCC----CCC----CCCCeEeccCCc
Q 044683          126 ---IPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLP----SCF----RTSSFVKKQDRR  190 (247)
Q Consensus       126 ---~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~----~~~~~L~l~~n~  190 (247)
                         ++..+...++|++|++++|.+++.    +...+..+++|++|++++|.+++...    ..+    .....|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence               233345556888888888877632    23445567788888888888774211    111    233478888888


Q ss_pred             ccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683          191 TVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       191 ~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                      +++.....     ++..+..  +|+.+++++|.++..
T Consensus       262 i~~~~~~~-----l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         262 ITDDGAKD-----LAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcHHHHH-----HHHHHhcCCCccEEECCCCCCcHH
Confidence            76221110     1122222  788888988888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.56  E-value=7.2e-17  Score=141.19  Aligned_cols=178  Identities=31%  Similarity=0.403  Sum_probs=116.7

Q ss_pred             EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhccc-ccEEEccCCccccCChH-hhhcCCCCCEEecc
Q 044683            6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLV-FIHLNLSRNAFNGSIPS-SFFDMKMLKSLDIS   83 (247)
Q Consensus         6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~   83 (247)
                      .++...|.+. .+|+...+++.|++|++..|.+. .+|+.++..... +..+..+.|++. ..|. .=..++.|+.|++.
T Consensus       291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHh
Confidence            3333344443 33444444555666666666665 555555443332 455555555544 2221 11123456677777


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP  149 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  149 (247)
                      +|.+++..- ..+.+..+|+.|++++|.++              +|++++|.++ .+|..+.+++.|++|...+|.+. .
T Consensus       368 nN~Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~  444 (1081)
T KOG0618|consen  368 NNHLTDSCF-PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S  444 (1081)
T ss_pred             cCcccccch-hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e
Confidence            777763222 22445778888888888544              7788888887 68899999999999999999998 7


Q ss_pred             CchhhhCCCCCCEEEccCCcCcCC-CCCCCC--CCCeEeccCCc
Q 044683          150 IPIEFCQLELLTILDLSNNTIFGT-LPSCFR--TSSFVKKQDRR  190 (247)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~--~~~~L~l~~n~  190 (247)
                      +| .+..++.|+.+|++.|.++.. ++....  ..++||+++|.
T Consensus       445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            77 778999999999999999833 344333  44599999997

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=1.1e-14  Score=119.28  Aligned_cols=215  Identities=24%  Similarity=0.203  Sum_probs=136.8

Q ss_pred             CCCcEEEccCCcccc------ccCccccCCCCCcEEEccCCceeecCCchhhhhccc---ccEEEccCCcccc----CCh
Q 044683            2 TSLKVLDASSNQLTG------NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLV---FIHLNLSRNAFNG----SIP   68 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~   68 (247)
                      +.+++++++++.+.+      ..+..+..+++|+.|++++|.+.+..+..+.. +.+   |++|++++|+++.    .+.
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHH
Confidence            357778887776652      23345666778888888888776444444433 444   8888888887762    223


Q ss_pred             HhhhcC-CCCCEEeccCCcccccCchh---HhhcCCCccEEEccCCC------------------ccEEEccCCcCCCCC
Q 044683           69 SSFFDM-KMLKSLDISHNQLTGEIPER---MATGCFSLEILALSNNS------------------LQGLYLSDNRLFGRI  126 (247)
Q Consensus        69 ~~~~~l-~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~l~l~~n~------------------l~~l~l~~n~~~~~~  126 (247)
                      ..+..+ ++|+.+++++|.+++.....   .+..+++|+.+++++|.                  ++.+++++|.+++..
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence            344555 77888888888776322221   23345678888877773                  457888888876433


Q ss_pred             ----chhhhcccCcCeeeCcCCcccccCchhhh-----CCCCCCEEEccCCcCcCC----CCCCC---CCCCeEeccCCc
Q 044683          127 ----PRWLGNLLALEDIMMPNNNLQGPIPIEFC-----QLELLTILDLSNNTIFGT----LPSCF---RTSSFVKKQDRR  190 (247)
Q Consensus       127 ----~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~---~~~~~L~l~~n~  190 (247)
                          ...+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.+++.    +...+   ....++++++|.
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence                34456778999999999999853222222     247999999999999721    11222   334499999999


Q ss_pred             ccccCCCcceeeeecchhc---CCCceEeccCCee
Q 044683          191 TVGKPCGSLGLDILPHLFR---RRPRRLAVEGFDL  222 (247)
Q Consensus       191 ~~~~~~~~~~l~l~p~~~~---~~L~~L~l~~n~l  222 (247)
                      ++......+     ...+.   ..++++++..|.+
T Consensus       290 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         290 FGEEGAQLL-----AESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHH-----HHHHhhcCCchhhcccCCCCC
Confidence            986533221     11111   1788888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=2.2e-14  Score=120.08  Aligned_cols=166  Identities=33%  Similarity=0.522  Sum_probs=91.7

Q ss_pred             EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683            6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus         6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      ..|++.|.+. .+|..++.+..|+.+.+..|.+. .+|..+.. +..|.+++++.|.+. ..|..++.++ |+.+.+++|
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            4566666666 56666666666666666666665 66666655 666666666666666 5566565555 666666666


Q ss_pred             cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683           86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL  165 (247)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  165 (247)
                      +++ .+|..+. ..+.|..++++.|.++.           +|..++.+.+|+.|.+..|++. .+|+.++.++ |..||+
T Consensus       154 kl~-~lp~~ig-~~~tl~~ld~s~nei~s-----------lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDf  218 (722)
T KOG0532|consen  154 KLT-SLPEEIG-LLPTLAHLDVSKNEIQS-----------LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDF  218 (722)
T ss_pred             ccc-cCCcccc-cchhHHHhhhhhhhhhh-----------chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeec
Confidence            666 6666665 46666666666665542           2444444444444444444444 3344444222 334444


Q ss_pred             cCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683          166 SNNTIFGTLPSCFRTSS---FVKKQDRRTV  192 (247)
Q Consensus       166 ~~n~l~~~~~~~~~~~~---~L~l~~n~~~  192 (247)
                      ++|+++ .+|..|..+.   +|.|.+|.+.
T Consensus       219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            444444 4444443222   4444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=1.4e-12  Score=96.50  Aligned_cols=130  Identities=28%  Similarity=0.324  Sum_probs=54.3

Q ss_pred             ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683           22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS  101 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  101 (247)
                      +.+...++.|++++|.|+ .+. .+...+.+|+.|++++|.++. +. .+..+++|++|++++|+++ .+...+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            344557899999999998 654 454447789999999999984 33 4778999999999999998 776655445889


Q ss_pred             ccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEc
Q 044683          102 LEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDL  165 (247)
Q Consensus       102 L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l  165 (247)
                      |+.|++++|.++.+.         .-..+..+++|++|++.+|+++...   ...+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~---------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLN---------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCC---------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChH---------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            998888888877542         1356778999999999999998432   245678999998875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=7.8e-12  Score=105.54  Aligned_cols=167  Identities=32%  Similarity=0.453  Sum_probs=93.7

Q ss_pred             EEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcc-cccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683            7 LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLL-VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus         7 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      ++...+.+. .....+..+..++.+++.+|.++ .++..... +. +|+.|++++|.+. .+|..++.++.|+.|++++|
T Consensus        98 l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          98 LDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeccccccc-cCchhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            444444443 22233444566777777777777 67766653 42 6777777777777 45555677777777777777


Q ss_pred             cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683           86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL  165 (247)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  165 (247)
                      .++ .+|.... ..+.|+.+++++|.++           .+|........|+.+++++|.+. ..+..+..++.+..+.+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-----------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-----------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-----------cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence            777 6666443 2566666666666554           22333333344555555555433 23344455555555555


Q ss_pred             cCCcCcCCCCCCC---CCCCeEeccCCccc
Q 044683          166 SNNTIFGTLPSCF---RTSSFVKKQDRRTV  192 (247)
Q Consensus       166 ~~n~l~~~~~~~~---~~~~~L~l~~n~~~  192 (247)
                      .+|++.. .+...   .....|++++|.++
T Consensus       240 ~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         240 SNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             CCceeee-ccchhccccccceecccccccc
Confidence            5555542 12222   12235555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.6e-13  Score=115.08  Aligned_cols=177  Identities=25%  Similarity=0.386  Sum_probs=144.8

Q ss_pred             CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccE
Q 044683           25 LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEI  104 (247)
Q Consensus        25 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  104 (247)
                      +......+++.|++. ++|..+.. +..|..+.++.|.+. .+|.+++++..|.+++++.|+++ .+|..++. + -|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-ccee
Confidence            455567899999998 99998877 778888999999987 78999999999999999999998 88888763 4 3777


Q ss_pred             EEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--
Q 044683          105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS--  182 (247)
Q Consensus       105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--  182 (247)
                      +.+++|+++           .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|..+....  
T Consensus       148 li~sNNkl~-----------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi  214 (722)
T KOG0532|consen  148 LIVSNNKLT-----------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLI  214 (722)
T ss_pred             EEEecCccc-----------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCcee
Confidence            777777665           56888888889999999999998 67888999999999999999998 5555444444  


Q ss_pred             eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCcccc
Q 044683          183 FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVC  231 (247)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~  231 (247)
                      .||++.|+++-          +|-.|..  .|++|.|.+|.+. ..|..+|
T Consensus       215 ~lDfScNkis~----------iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  215 RLDFSCNKISY----------LPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             eeecccCceee----------cchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            99999999873          4445566  9999999999997 4555554

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=1.9e-11  Score=108.38  Aligned_cols=91  Identities=32%  Similarity=0.592  Sum_probs=48.7

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..++.+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            344555555555555555555555555555555555555544443 5555555555555555555555555555555555


Q ss_pred             CCcccccCchhH
Q 044683           84 HNQLTGEIPERM   95 (247)
Q Consensus        84 ~n~~~~~~~~~~   95 (247)
                      +|.+++.+|..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=1e-11  Score=104.83  Aligned_cols=152  Identities=34%  Similarity=0.488  Sum_probs=108.1

Q ss_pred             CCCcEEEccCCccccccCccccCCC-CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +.++.+++.+|.++ .++.....+. +|+.|++++|.+. .+|..+.. +++|+.|++++|.+. .+|...+..+.|+.+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            35788999999998 6666677774 9999999999998 88766665 899999999999999 667666688999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.+. .+|..+. ....|+.+.+++|...           ..+..+...+++..+.+.+|++. ..+..++.++.+
T Consensus       192 ~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-----------~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l  257 (394)
T COG4886         192 DLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-----------ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL  257 (394)
T ss_pred             eccCCccc-cCchhhh-hhhhhhhhhhcCCcce-----------ecchhhhhcccccccccCCceee-eccchhcccccc
Confidence            99999998 8888652 2445887777777421           12333444555555555555554 223444555555


Q ss_pred             CEEEccCCcCc
Q 044683          161 TILDLSNNTIF  171 (247)
Q Consensus       161 ~~L~l~~n~l~  171 (247)
                      +.|++++|.++
T Consensus       258 ~~L~~s~n~i~  268 (394)
T COG4886         258 ETLDLSNNQIS  268 (394)
T ss_pred             ceecccccccc
Confidence            55555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.18  E-value=5.7e-12  Score=99.99  Aligned_cols=215  Identities=19%  Similarity=0.162  Sum_probs=142.4

Q ss_pred             CCCcEEEccCCcccccc----CccccCCCCCcEEEccCCc---eeecCCchhhh------hcccccEEEccCCccccCCh
Q 044683            2 TSLKVLDASSNQLTGNI----SPNLCELVLLRELYIDNND---LRGHIPVEIGT------YLLVFIHLNLSRNAFNGSIP   68 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~   68 (247)
                      .+++.++|++|.+....    ...+.+.++|+..++++-.   ...++|+....      +.++|++++||.|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            56788999999886543    3445566788888877632   22244433221      14578999999998876555


Q ss_pred             Hhh----hcCCCCCEEeccCCcccccCchhH-------------hhcCCCccEEEccCCC------------------cc
Q 044683           69 SSF----FDMKMLKSLDISHNQLTGEIPERM-------------ATGCFSLEILALSNNS------------------LQ  113 (247)
Q Consensus        69 ~~~----~~l~~L~~L~l~~n~~~~~~~~~~-------------~~~~~~L~~l~l~~n~------------------l~  113 (247)
                      ..|    ..+..|++|++.+|.+. ......             ...-+.|+.+..++|.                  +.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            554    35678889999988875 322211             0124578888888884                  33


Q ss_pred             EEEccCCcCCCC----CchhhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCC--------CC
Q 044683          114 GLYLSDNRLFGR----IPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLP--------SC  177 (247)
Q Consensus       114 ~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~  177 (247)
                      .+.+..|+|...    +...+..+++|++|+|.+|.++..    +...++.+++|++++++++.+...-.        ..
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            777888877642    234578889999999999988732    45678889999999999998874322        12


Q ss_pred             CCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCee
Q 044683          178 FRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDL  222 (247)
Q Consensus       178 ~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l  222 (247)
                      ......+.+.+|.++-..-..     +...+..  .|.+|+|++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~-----la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALA-----LAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHH-----HHHHHhcchhhHHhcCCcccc
Confidence            223448899999887321110     1111222  799999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=4.1e-11  Score=88.65  Aligned_cols=126  Identities=23%  Similarity=0.259  Sum_probs=49.0

Q ss_pred             CCcEEEccCCccccccCcccc-CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhh-hcCCCCCEE
Q 044683            3 SLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSF-FDMKMLKSL   80 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L   80 (247)
                      .+++|++++|.|+. + +.+. .+.+|+.|++++|.|+ .+.. +.. ++.|++|++++|+++. +...+ ..+++|++|
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~~-L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-LPG-LPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-ccC-hhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            47899999999984 3 3444 5789999999999998 6653 443 8899999999999995 44444 468999999


Q ss_pred             eccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCc
Q 044683           81 DISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMP  142 (247)
Q Consensus        81 ~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  142 (247)
                      ++++|++. .+.. .....+++|+.|++.+|.+..-       ..--...+..+++|+.||-.
T Consensus        94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~-------~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEK-------KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-------TTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccch-------hhHHHHHHHHcChhheeCCE
Confidence            99999997 3322 2334578888777777766521       00113346778889888653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.1e-11  Score=98.50  Aligned_cols=145  Identities=28%  Similarity=0.290  Sum_probs=74.2

Q ss_pred             CCCCcEEEccCCceeecCC-chhhhhcccccEEEccCCcccc--CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683           25 LVLLRELYIDNNDLRGHIP-VEIGTYLLVFIHLNLSRNAFNG--SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS  101 (247)
Q Consensus        25 l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  101 (247)
                      +.+|+...+++..+. ..+ ......+++++.|+++.|-+..  .+..-..++|+|+.|+++.|++........-..+++
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            566667777776665 222 1333346677777777776653  122233456777777777776652222211123455


Q ss_pred             ccEEEccCCCcc---------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc--hhhhCCCCCCEEE
Q 044683          102 LEILALSNNSLQ---------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP--IEFCQLELLTILD  164 (247)
Q Consensus       102 L~~l~l~~n~l~---------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~  164 (247)
                      ++.|.++.|.++               .|++..|..-..-......++.|+.|+|++|.+. ..+  ...+.++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence            666666555443               3444444211111222233445666666666554 222  3344566666666


Q ss_pred             ccCCcCc
Q 044683          165 LSNNTIF  171 (247)
Q Consensus       165 l~~n~l~  171 (247)
                      ++.+.++
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            6666655

>PLN03150 hypothetical protein; Provisional

Probab=99.06  E-value=9e-10  Score=97.84  Aligned_cols=103  Identities=29%  Similarity=0.487  Sum_probs=62.5

Q ss_pred             CCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhC
Q 044683           77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ  156 (247)
Q Consensus        77 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  156 (247)
                      ++.|++++|.+.+.+|..+.. +++|+.|++          ++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~L----------s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~  488 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINL----------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ  488 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC-CCCCCEEEC----------CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence            556666666666666665442 555554433          333344556666666677777777777776666666667


Q ss_pred             CCCCCEEEccCCcCcCCCCCCCCCC----CeEeccCCc
Q 044683          157 LELLTILDLSNNTIFGTLPSCFRTS----SFVKKQDRR  190 (247)
Q Consensus       157 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~L~l~~n~  190 (247)
                      +++|+.|++++|.+++.+|..+...    ..+++.+|.
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            7777777777777766666554321    155666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.7e-11  Score=93.47  Aligned_cols=135  Identities=22%  Similarity=0.236  Sum_probs=96.0

Q ss_pred             cccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCC
Q 044683           21 NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF  100 (247)
Q Consensus        21 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  100 (247)
                      .+...+.|+.+++++|.|+ .+.++..- .|.++.|+++.|++..+  ..++.+++|+.||+++|.++ .+.. +-..+.
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG  352 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG  352 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence            3444577888999999988 77776654 78899999999998733  34788899999999999887 5543 233466


Q ss_pred             CccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCCcCcCC
Q 044683          101 SLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNNTIFGT  173 (247)
Q Consensus       101 ~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~  173 (247)
                      +.+.|.++.|.+..+            ..++.+=+|..||+.+|+|...- -..++++|.|.++.+.+|.+++.
T Consensus       353 NIKtL~La~N~iE~L------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             CEeeeehhhhhHhhh------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            777777666665533            23455667788888888876321 24567788888888888888744

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=2e-10  Score=70.25  Aligned_cols=57  Identities=33%  Similarity=0.465  Sum_probs=24.2

Q ss_pred             CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683           28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      |++|++++|+++ .+|...+..+++|++|++++|.++...+.+|..+++|+++++++|
T Consensus         3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444444 334333333444444444444444333334444444444444444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=2.5e-10  Score=69.81  Aligned_cols=61  Identities=33%  Similarity=0.373  Sum_probs=55.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcc
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF   63 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l   63 (247)
                      ++|++|++++|.++...+..|..+++|++|++++|.++ .+++..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            57999999999999777789999999999999999998 77877777799999999999975

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=8.7e-11  Score=92.02  Aligned_cols=128  Identities=22%  Similarity=0.217  Sum_probs=94.4

Q ss_pred             cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683           50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW  129 (247)
Q Consensus        50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~  129 (247)
                      ...|+++|+++|.++ .+..+..-.|+++.|+++.|++. .+..  ...+++|+.|++++|.++.+           ..+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~-----------~Gw  347 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAEC-----------VGW  347 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhh-----------hhh
Confidence            346889999999998 56677778899999999999987 6544  33488888888888877643           344


Q ss_pred             hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCC-CCCC---CCCCeEeccCCccccc
Q 044683          130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL-PSCF---RTSSFVKKQDRRTVGK  194 (247)
Q Consensus       130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~---~~~~~L~l~~n~~~~~  194 (247)
                      -..+.++++|.+++|.+...  ..+..+-+|..||+++|+|.... -..+   .+...+.+.+|.+.+.
T Consensus       348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            45677888999999988732  56778888999999999986321 1222   2333788888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.2e-10  Score=93.58  Aligned_cols=170  Identities=24%  Similarity=0.217  Sum_probs=113.4

Q ss_pred             CCCcEEEccCCccccccC-ccccCCCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCC
Q 044683            2 TSLKVLDASSNQLTGNIS-PNLCELVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLK   78 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~   78 (247)
                      ++|+.+.+.++.+..... .....|++++.|++++|-+.. ..-..+...+|+|+.|.++.|++...... .-..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            457777777776652211 245567888888888887662 12234555678888888888877522111 112467788


Q ss_pred             EEeccCCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCcCCCCC-chhhhcccCcCeeeCcC
Q 044683           79 SLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLFGRI-PRWLGNLLALEDIMMPN  143 (247)
Q Consensus        79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~  143 (247)
                      .|.++.|.+++.--..+...+|+++.|.+..|              .+++|++++|++-... -.....++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            88888888875433444445788888888877              2447888888775322 13457788999999999


Q ss_pred             Cccccc-Cchh-----hhCCCCCCEEEccCCcCc
Q 044683          144 NNLQGP-IPIE-----FCQLELLTILDLSNNTIF  171 (247)
Q Consensus       144 n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~  171 (247)
                      +.+... .|+.     ...+++|+.|++..|.+.
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            988743 2333     345789999999999985

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.88  E-value=8.7e-10  Score=87.79  Aligned_cols=185  Identities=19%  Similarity=0.215  Sum_probs=100.4

Q ss_pred             CCCcEEEccCCccccccCcc----ccCCCCCcEEEccCCceeecCCchhhh------------hcccccEEEccCCcccc
Q 044683            2 TSLKVLDASSNQLTGNISPN----LCELVLLRELYIDNNDLRGHIPVEIGT------------YLLVFIHLNLSRNAFNG   65 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~------------~l~~L~~L~l~~n~l~~   65 (247)
                      +.|+.++||+|.+....+..    +.++..|++|++.+|.+.......+++            ..+.|+.+...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            35666666666655433322    334566666666666554111111000            13456666666666542


Q ss_pred             C----ChHhhhcCCCCCEEeccCCccccc---CchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCe
Q 044683           66 S----IPSSFFDMKMLKSLDISHNQLTGE---IPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALED  138 (247)
Q Consensus        66 ~----~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~  138 (247)
                      .    ....|...+.|+.+.++.|.+...   .-...+..+++|+.|++.+|-++.-.      +..+...++.+++|+.
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALAKALSSWPHLRE  245 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHHHHhcccchhee
Confidence            1    223444556666666666655411   11112334566665555555433110      0123456778889999


Q ss_pred             eeCcCCcccccCc----hhhh-CCCCCCEEEccCCcCcCCC----CCCCCCC---CeEeccCCccc
Q 044683          139 IMMPNNNLQGPIP----IEFC-QLELLTILDLSNNTIFGTL----PSCFRTS---SFVKKQDRRTV  192 (247)
Q Consensus       139 L~l~~n~~~~~~~----~~l~-~~~~L~~L~l~~n~l~~~~----~~~~~~~---~~L~l~~n~~~  192 (247)
                      +++++|.+.....    +++. ..+.|+++.+.+|.|+..-    ..+....   ..|++++|++.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999998874332    3333 4689999999999987331    1222211   28899999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2.3e-09  Score=91.03  Aligned_cols=101  Identities=27%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      ..+++..|.+. ..-..+..+..++.+++.+|.+. .+...+.. +++|++|++++|.|+...  .+..++.|+.|++.+
T Consensus        75 ~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   75 KELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             Hhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhh-hhcchheecccccccccc--chhhccchhhheecc
Confidence            34445555554 22334556666777777777776 44432322 667777777777776432  244556677777777


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCcc
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQ  113 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  113 (247)
                      |.++ .+..  +..+..|+.+++++|.++
T Consensus       150 N~i~-~~~~--~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  150 NLIS-DISG--LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             Ccch-hccC--CccchhhhcccCCcchhh
Confidence            7766 4433  222555665555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.68  E-value=2.2e-08  Score=77.58  Aligned_cols=219  Identities=18%  Similarity=0.142  Sum_probs=140.5

Q ss_pred             CCCCcEEEccCCccccccCccc----cCCCCCcEEEccCCcee---ecCCchhh------hhcccccEEEccCCccccCC
Q 044683            1 MTSLKVLDASSNQLTGNISPNL----CELVLLRELYIDNNDLR---GHIPVEIG------TYLLVFIHLNLSRNAFNGSI   67 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~i~---~~~~~~~~------~~l~~L~~L~l~~n~l~~~~   67 (247)
                      |..++.+++|+|.|......++    ++-++|+...++.....   ++++..+.      -.+|.|+.++++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4568899999999976554444    44577888877764322   22332211      12688999999999987666


Q ss_pred             hHhh----hcCCCCCEEeccCCcccccCch-----hHh--------hcCCCccEEEccCCC------------------c
Q 044683           68 PSSF----FDMKMLKSLDISHNQLTGEIPE-----RMA--------TGCFSLEILALSNNS------------------L  112 (247)
Q Consensus        68 ~~~~----~~l~~L~~L~l~~n~~~~~~~~-----~~~--------~~~~~L~~l~l~~n~------------------l  112 (247)
                      |..+    +..+.|.+|.+++|.+. .+..     ..+        ..-|.|+....++|+                  +
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            6544    45678999999999875 3331     111        135678999988884                  4


Q ss_pred             cEEEccCCcCCCCCc-----hhhhcccCcCeeeCcCCcccc----cCchhhhCCCCCCEEEccCCcCcCCCC----CCC-
Q 044683          113 QGLYLSDNRLFGRIP-----RWLGNLLALEDIMMPNNNLQG----PIPIEFCQLELLTILDLSNNTIFGTLP----SCF-  178 (247)
Q Consensus       113 ~~l~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~-  178 (247)
                      .++.+..|.|.....     ..+..+.+|++|++++|.++.    .+..+++.++.|++|.+.+|-++..-.    ..| 
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            478888888763311     124567899999999998873    245678889999999999988863211    111 


Q ss_pred             ----CCCCeEeccCCcccccCCCcceeee-ecchhcC---CCceEeccCCeeee
Q 044683          179 ----RTSSFVKKQDRRTVGKPCGSLGLDI-LPHLFRR---RPRRLAVEGFDLVL  224 (247)
Q Consensus       179 ----~~~~~L~l~~n~~~~~~~~~~~l~l-~p~~~~~---~L~~L~l~~n~l~~  224 (247)
                          .....|...+|...+.+-.    ++ +|.....   -|..|-+.+|.+..
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~i~----~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGIIL----DISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhcCCCccccccchhhhcCceee----eechhhhhhcccHHHHHHHHccCcchh
Confidence                2233667777766654311    11 2222222   45556677777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=7.2e-09  Score=88.05  Aligned_cols=161  Identities=32%  Similarity=0.392  Sum_probs=109.9

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++++.+++.+|.|.. +...+..+.+|++|++++|.|+ .+...- . ++.|+.|++.+|.+...  ..+..++.|+.+
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~-~-l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS-T-LTLLKELNLSGNLISDI--SGLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh-h-ccchhhheeccCcchhc--cCCccchhhhcc
Confidence            3578899999999984 4443778999999999999998 554332 2 66799999999999832  345668899999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccE------------EEccCCcCCCCCchhhhcccC--cCeeeCcCCcc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQG------------LYLSDNRLFGRIPRWLGNLLA--LEDIMMPNNNL  146 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~------------l~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~~  146 (247)
                      ++++|.+. .+.......+.+++.+.+.+|.+..            +++..|.+...-  .+.....  |+.+++++|.+
T Consensus       168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  168 DLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             cCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcc
Confidence            99999998 6655202347788888888886552            234444443211  1112222  66777777777


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCc
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      . ..+..+..+..+..+++.+|.+.
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             c-cccccccccccccccchhhcccc
Confidence            6 33345566677777777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.51  E-value=1.3e-07  Score=70.27  Aligned_cols=127  Identities=24%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683           28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      =+.+++++.++. .+. ..+....+...+|+++|.+.. . ..|..+++|.+|.+++|+++ .+...+...+++++.|.+
T Consensus        21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccc-chh-hccccccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence            356777777665 322 244446678889999998863 2 34677889999999999998 777777777888999999


Q ss_pred             cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEccCC
Q 044683          108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDLSNN  168 (247)
Q Consensus       108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n  168 (247)
                      .+|+++++.         --..+..++.|++|.+-+|.++..-   -..+..+|+|+.||.+.=
T Consensus        96 tnNsi~~l~---------dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   96 TNNSIQELG---------DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCcchhhhh---------hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999888662         1234667889999999999887321   245678899999998664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=3e-09  Score=92.32  Aligned_cols=105  Identities=33%  Similarity=0.430  Sum_probs=50.4

Q ss_pred             cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683           50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW  129 (247)
Q Consensus        50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~  129 (247)
                      ++.++.|++++|+++..  +.+..+++|++||+++|.+. .+|.....++ +|+.|.+.+|.+++|            ..
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL------------~g  249 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL------------RG  249 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh------------hh
Confidence            45566666666666532  25556666666666666665 5554322222 255555555544322            12


Q ss_pred             hhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCCcC
Q 044683          130 LGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNNTI  170 (247)
Q Consensus       130 ~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l  170 (247)
                      +.++++|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            344555555555555544210 01222334445555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=1.6e-07  Score=85.95  Aligned_cols=105  Identities=26%  Similarity=0.301  Sum_probs=66.1

Q ss_pred             CCcEEEccCCc--cccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            3 SLKVLDASSNQ--LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         3 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      .|++|-+..|.  +.......|..++.|++||+++|.--+.+|..++. +-+|++|+++++.+. .+|..++.+.+|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            45566666664  33233334666777777777766554577777766 677777777777776 667777777777777


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNN  110 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  110 (247)
                      ++..+.....+ ..+...+.+|+++.+...
T Consensus       624 nl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccc-cchhhhcccccEEEeecc
Confidence            77766544233 333334677777765443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=1.4e-08  Score=88.28  Aligned_cols=155  Identities=21%  Similarity=0.159  Sum_probs=77.8

Q ss_pred             CccccCCCCCcEEEccCCceeecCCchhhhhcccccE--------------------------------EEccCCccccC
Q 044683           19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH--------------------------------LNLSRNAFNGS   66 (247)
Q Consensus        19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~--------------------------------L~l~~n~l~~~   66 (247)
                      |-.+..++.|++|.+.++.+. . ..++...-.+|++                                .+.+.|++. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            455667788888888888776 2 1111111122333                                333344443 2


Q ss_pred             ChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           67 IPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        67 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ...++.-++.++.|+++.|+++ ... . ...++.|++|++++|.++.           +|..-.....|+.|.+++|.+
T Consensus       179 mD~SLqll~ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~-----------vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRH-----------VPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhh-hhH-H-HHhcccccccccccchhcc-----------ccccchhhhhheeeeecccHH
Confidence            3333444455555555555554 222 1 2235555555555554442           222111122377777777776


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCC-CCCC---CCCeEeccCCccc
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFR---TSSFVKKQDRRTV  192 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~---~~~~L~l~~n~~~  192 (247)
                      +..  ..+.++++|+.||+++|-+.+.-- ..+.   ....|+|.+|.+.
T Consensus       245 ~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  245 TTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             Hhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            632  345667777777777777764321 1111   1126666666653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.41  E-value=3.4e-08  Score=68.90  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             cccEEEccCCccccCChHhhhc---CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCch
Q 044683           52 VFIHLNLSRNAFNGSIPSSFFD---MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR  128 (247)
Q Consensus        52 ~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~  128 (247)
                      .+..++++.|.+. .++++...   ...|..+++++|.+. .+|..+-...+.++.+++.+|.++           .+|.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-----------dvPe   94 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-----------DVPE   94 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-----------hchH
Confidence            4667788888765 44554443   345666788888888 777776555566666666655554           4577


Q ss_pred             hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCC
Q 044683          129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPC  196 (247)
Q Consensus       129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~  196 (247)
                      .+..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+....-+.|....  ..++.++.+.+..+
T Consensus        95 E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen   95 ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence            7888888888888888888 5567777788888888888887733333333222  55666666665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=2.3e-08  Score=78.52  Aligned_cols=149  Identities=20%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC-cccccCchhHhhcCCCccEE
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN-QLTGEIPERMATGCFSLEIL  105 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~l  105 (247)
                      .+++||++...|+..--..+-..+.+|+.|.+.++.+...+...++.-..|+.++++.+ .++.....-+++.+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47777777777763222222233566777777777777777777777777888877775 45422233455667777777


Q ss_pred             EccCCC----------------ccEEEccCCcCC---CCCchhhhcccCcCeeeCcCCc-ccccCchhhhCCCCCCEEEc
Q 044683          106 ALSNNS----------------LQGLYLSDNRLF---GRIPRWLGNLLALEDIMMPNNN-LQGPIPIEFCQLELLTILDL  165 (247)
Q Consensus       106 ~l~~n~----------------l~~l~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l  165 (247)
                      ++++|.                ++.|+++++.-.   ..+..-.++++++.+|||++|- ++......+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            777763                234555544211   1112223556777777777663 33223345556777777777


Q ss_pred             cCCcCcCCCCCC
Q 044683          166 SNNTIFGTLPSC  177 (247)
Q Consensus       166 ~~n~l~~~~~~~  177 (247)
                      +.+..  .+|..
T Consensus       346 sRCY~--i~p~~  355 (419)
T KOG2120|consen  346 SRCYD--IIPET  355 (419)
T ss_pred             hhhcC--CChHH
Confidence            66653  44443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=4.1e-07  Score=71.61  Aligned_cols=100  Identities=25%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             CCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683           25 LVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE  103 (247)
Q Consensus        25 l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  103 (247)
                      +..++.+++.+|.|++ .--..+...+|.|++|+++.|.+...+-..-....+|+.+.+.+..+.+.-..+....+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            5678888999988872 111233345888999999999887543322246678889999888887666666667788899


Q ss_pred             EEEccCCCccEEEccCCcCCC
Q 044683          104 ILALSNNSLQGLYLSDNRLFG  124 (247)
Q Consensus       104 ~l~l~~n~l~~l~l~~n~~~~  124 (247)
                      .+.++.|+++.+.+..+-+..
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~  170 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIED  170 (418)
T ss_pred             hhhhccchhhhhccccccccc
Confidence            999999988888877776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.26  E-value=1.2e-07  Score=66.24  Aligned_cols=103  Identities=26%  Similarity=0.374  Sum_probs=60.4

Q ss_pred             EEEccCCccccccC---ccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            6 VLDASSNQLTGNIS---PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         6 ~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .++|+.|.+- .++   ..+.....|+..++++|.+. .+|+.+....+.++++++.+|.+. .+|..++.++.|+.+++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            4556666544 222   22333445555667777766 666666655556666777777666 55666666777777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ  113 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  113 (247)
                      +.|.+. ..|+.++. +.++-.|+..+|.+.
T Consensus       108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             ccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence            777666 56665554 555555554444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.9e-06  Score=48.47  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=21.2

Q ss_pred             cccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683           52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus        52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      +|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 44555666666666666666665

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.2e-06  Score=49.30  Aligned_cols=37  Identities=38%  Similarity=0.547  Sum_probs=26.8

Q ss_pred             cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCc
Q 044683          134 LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       134 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36778888888887 55666778888888888888877

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=6.3e-06  Score=75.78  Aligned_cols=126  Identities=25%  Similarity=0.329  Sum_probs=88.1

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCc--eeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNND--LRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      .+.+.+-+|.+. .++... .+++|+.|-+..|.  +. .++..++..++.|+.||+++|.-.+.+|..++.+-+|++|+
T Consensus       525 ~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  525 VRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             eeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            455566556554 223222 23478888888886  55 78888888899999999998876668899999999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNN  144 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  144 (247)
                      ++++.+. .+|.++.. +..|.+|++..+.          ....++.....+++|++|.+..-
T Consensus       602 L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~----------~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGN-LKKLIYLNLEVTG----------RLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCcc-ccchHHHH-HHhhheecccccc----------ccccccchhhhcccccEEEeecc
Confidence            9999998 88988764 7777777665442          11123444455667777666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.07  E-value=7.2e-06  Score=61.14  Aligned_cols=108  Identities=21%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCch-hHhhcCCCccEE
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE-RMATGCFSLEIL  105 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l  105 (247)
                      +...+|+++|.+. .++ .+.. ++.|++|.+++|+|+.+.|.--.-+++|..|.+.+|.+. .+.+ .-...+|.|+.|
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~-l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPH-LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchh-hcc-cCCC-ccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            4455677777665 333 2222 666777777777777554443334566777777777665 3321 112236666666


Q ss_pred             EccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683          106 ALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus       106 ~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      .+-+|.++...-.       -...+..++++++||.+.-.
T Consensus       119 tll~Npv~~k~~Y-------R~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNY-------RLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCc-------eeEEEEecCcceEeehhhhh
Confidence            6666655422100       01224556677777766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=1e-05  Score=72.57  Aligned_cols=134  Identities=23%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             CCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683           26 VLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE  103 (247)
Q Consensus        26 ~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  103 (247)
                      .+|++|++++...- ..-|..++..+|+|+.|.+++-.+.. ..-....++|+|..||+++++++ .+ .++. .+.+|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence            34555555553211 12333444445666666665554431 11223345566666666666555 33 2222 244554


Q ss_pred             EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC------chhhhCCCCCCEEEccCCcCc
Q 044683          104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI------PIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      .|.+.+=.+..         ...-..+.++++|++||+|..+.....      -+.-..+|+|+.||.+++.+.
T Consensus       199 ~L~mrnLe~e~---------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFES---------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCc---------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            44433211110         011223455666666666655443211      011223566666666666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.9e-06  Score=67.98  Aligned_cols=161  Identities=23%  Similarity=0.163  Sum_probs=97.6

Q ss_pred             CcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-ccccC-ChHhhhcCCCCCEE
Q 044683            4 LKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNGS-IPSSFFDMKMLKSL   80 (247)
Q Consensus         4 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L   80 (247)
                      |+++|++...|+..- -.-+..|.+|+.|.+.++.+.+.+...+.+ -..|+.++++.+ .++.- ..--+..+..|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            667788777776432 223455777888888888777666666665 457788888765 33311 11234567777777


Q ss_pred             eccCCcccccCchh-HhhcCCCccEEEccCC-----------------CccEEEccCCcC-CCCCchhhhcccCcCeeeC
Q 044683           81 DISHNQLTGEIPER-MATGCFSLEILALSNN-----------------SLQGLYLSDNRL-FGRIPRWLGNLLALEDIMM  141 (247)
Q Consensus        81 ~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n-----------------~l~~l~l~~n~~-~~~~~~~~~~~~~L~~L~l  141 (247)
                      +++.+....+.-.. +..--+++..|+++++                 .+..||++.+.. +...-..+..++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77777654222111 1112245555555554                 344667766543 3333456778899999999


Q ss_pred             cCCcccccCchh---hhCCCCCCEEEccC
Q 044683          142 PNNNLQGPIPIE---FCQLELLTILDLSN  167 (247)
Q Consensus       142 ~~n~~~~~~~~~---l~~~~~L~~L~l~~  167 (247)
                      +.|-.  ++|..   +...|.|.+||+-+
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecc
Confidence            98854  34443   44567888888755

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.80  E-value=8.2e-05  Score=52.37  Aligned_cols=124  Identities=17%  Similarity=0.249  Sum_probs=53.9

Q ss_pred             CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhc
Q 044683           19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG   98 (247)
Q Consensus        19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~   98 (247)
                      ..+|.++.+|+.+.+.. .+. .++...+..+.+++.+.+..+ +......+|..+++++.+.+.+ .+. .++...+..
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~   79 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSN   79 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT
T ss_pred             HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccc
Confidence            34566666777777764 455 566666665667777777664 4434445666666777777755 333 455555655


Q ss_pred             CCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           99 CFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        99 ~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      +++++.+.+..+ ++.+.          ...+..+ .++.+.+.. .+.......|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~----------~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIG----------SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEH----------TTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEc----------hhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666665443 33321          2234444 566665554 2222333455555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=1.9e-05  Score=62.41  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=92.6

Q ss_pred             CCcEEEccCCcccc--ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCE
Q 044683            3 SLKVLDASSNQLTG--NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKS   79 (247)
Q Consensus         3 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~   79 (247)
                      .++++|+.+|.|+.  .+..-+.+++.++.|++++|.+...+ ........+|+.+.+.+..+.- .....+..+|.++.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            46789999998875  23444567999999999999887322 2221225689999998887642 22344567888888


Q ss_pred             EeccCCcccccCc--hh-HhhcCCCccEEEccCCC----------------ccEEEccCCcCCC-CCchhhhcccCcCee
Q 044683           80 LDISHNQLTGEIP--ER-MATGCFSLEILALSNNS----------------LQGLYLSDNRLFG-RIPRWLGNLLALEDI  139 (247)
Q Consensus        80 L~l~~n~~~~~~~--~~-~~~~~~~L~~l~l~~n~----------------l~~l~l~~n~~~~-~~~~~~~~~~~L~~L  139 (247)
                      +.++.|.+. .+-  .. +-..-+.++.+....|.                +..+.+..|.+.. ...+....++.+.-|
T Consensus       151 lHmS~N~~r-q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  151 LHMSDNSLR-QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhccchhh-hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            888888543 111  00 00001133333333331                1122233332221 112223334455566


Q ss_pred             eCcCCcccccC-chhhhCCCCCCEEEccCCcCc
Q 044683          140 MMPNNNLQGPI-PIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       140 ~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      +++.+++.+-- -+.+.+++.|+.|.++++.+.
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            66666665221 255666677777777776665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.78  E-value=6.2e-05  Score=58.90  Aligned_cols=79  Identities=16%  Similarity=0.044  Sum_probs=49.4

Q ss_pred             EEEccCCcCCC----CCchhhhcccCcCeeeCcCCcccccCch----hhh--CCCCCCEEEccCCcCcCCCC-CCC-C--
Q 044683          114 GLYLSDNRLFG----RIPRWLGNLLALEDIMMPNNNLQGPIPI----EFC--QLELLTILDLSNNTIFGTLP-SCF-R--  179 (247)
Q Consensus       114 ~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~l~--~~~~L~~L~l~~n~l~~~~~-~~~-~--  179 (247)
                      .|++..|.++.    .+...++.|+.|+.|.+.+|-++.....    .+.  ..++|..|-..+|.+.+..- ..+ .  
T Consensus       218 vLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~  297 (388)
T COG5238         218 VLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF  297 (388)
T ss_pred             eeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh
Confidence            45555555543    2345677888999999999988754322    222  36888999999998875432 211 1  


Q ss_pred             ---CCC---eEeccCCccc
Q 044683          180 ---TSS---FVKKQDRRTV  192 (247)
Q Consensus       180 ---~~~---~L~l~~n~~~  192 (247)
                         ...   .+.+.+|++.
T Consensus       298 e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         298 EQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhcccHHHHHHHHccCcch
Confidence               111   5666777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00011  Score=61.52  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683           24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus        24 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      .+.+++.|++++|.++ .+|. +   +.+|++|.++++.--..+|..+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3566677777777666 6662 1   3457777776643322444433  245667777666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=3.4e-05  Score=69.29  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=90.5

Q ss_pred             CCcEEEccCCcccccc-Cccc-cCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            3 SLKVLDASSNQLTGNI-SPNL-CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~-~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +|++|++++...-... +..+ .-+|.|+.|.+.+-.+...-=..++..+|+|..||++++.++..  ..+.++.+|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5788888886433221 1222 33899999999987665221123445578999999999999843  678899999999


Q ss_pred             eccCCcccc-cCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683           81 DISHNQLTG-EIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI  150 (247)
Q Consensus        81 ~l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  150 (247)
                      .+.+=.+.. ..-..+|. +.+|+.||+++..-..-.    .+-..-.+.-..++.|+.||.+++.+...+
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~----~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDT----KIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeeccccccccch----HHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            888766551 12235665 889999988875332110    000001112234779999999998887544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00061  Score=57.16  Aligned_cols=71  Identities=20%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCC-ceeecCCchhhhhcccccEEEccCC-ccccCChHhhhcCCCCCE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSRN-AFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~   79 (247)
                      ..++.|++++|.++ .+|. +  -..|+.|.++++ .++ .+|..+   .++|++|++++| .+. .+|.      +|+.
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-cccc------ccce
Confidence            56889999999888 4552 2  136999999874 454 777655   458999999998 544 4453      4777


Q ss_pred             EeccCCcc
Q 044683           80 LDISHNQL   87 (247)
Q Consensus        80 L~l~~n~~   87 (247)
                      |++..+..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            77776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.41  E-value=0.00036  Score=49.03  Aligned_cols=101  Identities=17%  Similarity=0.239  Sum_probs=63.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|+.+.+.. .+.......|..+..++.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++++.+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            4678888875 566566778888989999999885 66 77777777787899999976 44435556788899999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSN  109 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~  109 (247)
                      +..+ +. .++...+... .++.+.+..
T Consensus        88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            9775 55 6777777655 777666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.0002  Score=55.53  Aligned_cols=112  Identities=23%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC--ccccCChHhhhcCCCCCEEeccCCcccccCchhH
Q 044683           18 ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN--AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM   95 (247)
Q Consensus        18 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   95 (247)
                      +......+..++.+++.+..++ .+.. +.. +++|++|.++.|  ++.+..+.-...+|+|+++++++|++. . +..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~-~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl  109 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTN-FPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTL  109 (260)
T ss_pred             cccccccccchhhhhhhcccee-eccc-CCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-cccc
Confidence            3444445666777777776666 3322 222 778888888888  544433333445688888888888876 2 2222


Q ss_pred             h--hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeC
Q 044683           96 A--TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMM  141 (247)
Q Consensus        96 ~--~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  141 (247)
                      .  ..+.+|..|++..|..+.++  .     --...+.-+++|++++=
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~--d-----yre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLD--D-----YREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccc--c-----HHHHHHHHhhhhccccc
Confidence            1  22445555555555444311  1     11223445566666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00016  Score=56.08  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             cccccEEEccCCccccCChHhhhcCCCCCEEeccCC--cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc
Q 044683           50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN--QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP  127 (247)
Q Consensus        50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~  127 (247)
                      ...|+.+.+.+..++..  ..+-.+++|+.|.++.|  ++.+.++.-+ ..+|+|+++++++|.++.+.         .-
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~ls---------tl  109 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLS---------TL  109 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccc---------cc
Confidence            45666677767666521  23446778888888888  4443333322 33578887777777765421         12


Q ss_pred             hhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEc
Q 044683          128 RWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDL  165 (247)
Q Consensus       128 ~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l  165 (247)
                      ..+..+.+|..|++.+|..+...   -..+.-+++|++||-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            23556677788888888666422   133445667766653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=3.6e-05  Score=60.36  Aligned_cols=99  Identities=24%  Similarity=0.266  Sum_probs=44.3

Q ss_pred             cccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh
Q 044683           52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG  131 (247)
Q Consensus        52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~  131 (247)
                      +.+.|++.+|.+..+  .....++.|+.|.++-|.++ .+..  +..|.+|+++.+..|.|..++         --..+.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sld---------EL~YLk   85 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLD---------ELEYLK   85 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHH---------HHHHHh
Confidence            444555555555422  22334555555555555554 3322  222444443333333332221         122345


Q ss_pred             cccCcCeeeCcCCcccccCc-----hhhhCCCCCCEEE
Q 044683          132 NLLALEDIMMPNNNLQGPIP-----IEFCQLELLTILD  164 (247)
Q Consensus       132 ~~~~L~~L~l~~n~~~~~~~-----~~l~~~~~L~~L~  164 (247)
                      ++++|+.|+|..|...+.-+     ..+..+|+|+.||
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            55666666666665443321     2344455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=8.2e-05  Score=58.42  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH--hhhcCCCCCEE
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS--SFFDMKMLKSL   80 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L   80 (247)
                      +++.|++.+|+++++  ....+|+.|++|.|+-|.|+ .+.. +.. +..|++|+|..|.|.. +..  -+.++++|+.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l~r-CtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-LQR-CTRLKELYLRKNCIES-LDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-HHH-HHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence            456788888888854  33456899999999999998 5543 333 7889999999999873 322  24678999999


Q ss_pred             eccCCcccccCchh----HhhcCCCccEEE
Q 044683           81 DISHNQLTGEIPER----MATGCFSLEILA  106 (247)
Q Consensus        81 ~l~~n~~~~~~~~~----~~~~~~~L~~l~  106 (247)
                      ++..|.-.+..+..    +.+.+|+|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998776555543    345578888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.90  E-value=0.00048  Score=32.36  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=17.3

Q ss_pred             CCceEeccCCeeeecCCccccCC
Q 044683          211 RPRRLAVEGFDLVLELPQIVCGL  233 (247)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~~~~l  233 (247)
                      +|++||+++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4789999999999 677767764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0033  Score=29.41  Aligned_cols=12  Identities=58%  Similarity=0.700  Sum_probs=6.2

Q ss_pred             CcEEEccCCccc
Q 044683            4 LKVLDASSNQLT   15 (247)
Q Consensus         4 L~~L~l~~n~l~   15 (247)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.61  E-value=0.00013  Score=62.86  Aligned_cols=168  Identities=23%  Similarity=0.217  Sum_probs=100.3

Q ss_pred             CcEEEccCCccccccC----ccccCCCCCcEEEccCCceeecCCchhhhhc----ccccEEEccCCcccc----CChHhh
Q 044683            4 LKVLDASSNQLTGNIS----PNLCELVLLRELYIDNNDLRGHIPVEIGTYL----LVFIHLNLSRNAFNG----SIPSSF   71 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l----~~L~~L~l~~n~l~~----~~~~~~   71 (247)
                      ++.+++.+|.+.....    ..+.....|+.|++++|.+.+.....+...+    ..+++|++..|.++.    .++..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5667778887765433    3445577888899999888754444443332    346677788887764    344455


Q ss_pred             hcCCCCCEEeccCCcccc----cCchhHh---hcCCCccEEEccCCCcc-------------------EEEccCCcCCCC
Q 044683           72 FDMKMLKSLDISHNQLTG----EIPERMA---TGCFSLEILALSNNSLQ-------------------GLYLSDNRLFGR  125 (247)
Q Consensus        72 ~~l~~L~~L~l~~n~~~~----~~~~~~~---~~~~~L~~l~l~~n~l~-------------------~l~l~~n~~~~~  125 (247)
                      .....++.++++.|.+..    .++....   ....+++++.+.+|.++                   .+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            556778888888887641    1111111   12445666666666433                   456666665543


Q ss_pred             C----chhhhcc-cCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683          126 I----PRWLGNL-LALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       126 ~----~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      .    ...+... ..+++++++.|.++..    ....+..++.++++.+++|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            2    1223333 4567777777777643    2344555667777777777775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.35  E-value=0.0085  Score=51.83  Aligned_cols=61  Identities=28%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             cccccEEEccCCc-cccCChHhhhc-CCCCCEEeccCCc-ccccCchhHhhcCCCccEEEccCC
Q 044683           50 LLVFIHLNLSRNA-FNGSIPSSFFD-MKMLKSLDISHNQ-LTGEIPERMATGCFSLEILALSNN  110 (247)
Q Consensus        50 l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n  110 (247)
                      +.+|+.++++.+. ++...-..++. +++|++|.+..+. +++..-..+...++.|+.++++++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3445555555544 33222222222 4455555544443 332222233334445555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.39  E-value=0.035  Score=26.93  Aligned_cols=20  Identities=40%  Similarity=0.463  Sum_probs=9.9

Q ss_pred             CCcEEEccCCceeecCCchhh
Q 044683           27 LLRELYIDNNDLRGHIPVEIG   47 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~   47 (247)
                      +|+.|++++|.++ .+|+..+
T Consensus         3 ~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCC-cCCHHHc
Confidence            4455555555554 4444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.39  E-value=0.035  Score=26.93  Aligned_cols=20  Identities=40%  Similarity=0.463  Sum_probs=9.9

Q ss_pred             CCcEEEccCCceeecCCchhh
Q 044683           27 LLRELYIDNNDLRGHIPVEIG   47 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~   47 (247)
                      +|+.|++++|.++ .+|+..+
T Consensus         3 ~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCC-cCCHHHc
Confidence            4455555555554 4444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.34  E-value=0.046  Score=26.52  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=13.1

Q ss_pred             CCCCEEeccCCcccccCchhHh
Q 044683           75 KMLKSLDISHNQLTGEIPERMA   96 (247)
Q Consensus        75 ~~L~~L~l~~n~~~~~~~~~~~   96 (247)
                      ++|++|++++|.+. .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.34  E-value=0.046  Score=26.52  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=13.1

Q ss_pred             CCCCEEeccCCcccccCchhHh
Q 044683           75 KMLKSLDISHNQLTGEIPERMA   96 (247)
Q Consensus        75 ~~L~~L~l~~n~~~~~~~~~~~   96 (247)
                      ++|++|++++|.+. .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 6666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.17  E-value=0.036  Score=24.02  Aligned_cols=11  Identities=36%  Similarity=0.522  Sum_probs=3.3

Q ss_pred             ccEEEccCCcc
Q 044683           53 FIHLNLSRNAF   63 (247)
Q Consensus        53 L~~L~l~~n~l   63 (247)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444433

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.92  E-value=0.06  Score=46.55  Aligned_cols=63  Identities=16%  Similarity=0.036  Sum_probs=33.9

Q ss_pred             CCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccCCc-cccCC-hHhhhcCCCCCEEeccCCc
Q 044683           24 ELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSRNA-FNGSI-PSSFFDMKMLKSLDISHNQ   86 (247)
Q Consensus        24 ~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~   86 (247)
                      .+++++.++++... +++..-..+...+++|++|.+.++. ++... ......++.|++++++.+.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            35666677776665 4433333333335667777666555 33222 1222345667777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.87  E-value=0.00071  Score=58.39  Aligned_cols=186  Identities=22%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             CcEEEccCCceeecCCchhhhh---cccccEEEccCCccccCChHhhh----cC-CCCCEEeccCCcccccCchhHhhc-
Q 044683           28 LRELYIDNNDLRGHIPVEIGTY---LLVFIHLNLSRNAFNGSIPSSFF----DM-KMLKSLDISHNQLTGEIPERMATG-   98 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~~-   98 (247)
                      +..+.+.+|.+.+.....+...   .+.|+.|++++|.+.......+.    .. +.++++++..+.+++.-...+... 
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5667777777764433333322   45677778888877643222221    21 446666666666653222222111 


Q ss_pred             --CCCccEEEccCCCccEEEccCCcCCCCCchhhh----cccCcCeeeCcCCccccc----CchhhhCCCC-CCEEEccC
Q 044683           99 --CFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG----NLLALEDIMMPNNNLQGP----IPIEFCQLEL-LTILDLSN  167 (247)
Q Consensus        99 --~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~-L~~L~l~~  167 (247)
                        ...++.+++..|.+.....      -.++..+.    ...++++|.+.+|.++..    ....+...+. +..+++.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~------~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~  242 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGL------LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS  242 (478)
T ss_pred             hcccchhHHHHHhcccchhhh------HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence              3444544444444321100      01233333    467788888888887732    2344555555 67788888


Q ss_pred             CcCcCC----CCCCCCCC----CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          168 NTIFGT----LPSCFRTS----SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       168 n~l~~~----~~~~~~~~----~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      |.+.+.    ....+...    ..++++.|.+++....++     +..+..  .++++.+++|.++.
T Consensus       243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L-----~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL-----AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH-----HHHHhhhHHHHHhhcccCcccc
Confidence            888643    12223222    278888888886654432     222333  68888888887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.68  E-value=0.015  Score=43.75  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=34.6

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCC-hHhhh-cCCCCCEEeccCC-cccccCchhHhhcCCCcc
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSI-PSSFF-DMKMLKSLDISHN-QLTGEIPERMATGCFSLE  103 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~  103 (247)
                      .++.++-++..|..+.-+.+.. ++.++.|.+.+|.--+.- -.-++ ..++|+.|++++| +|+ +..-.....+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence            3455555665555333333333 555555655555322110 00011 2356666666655 344 22222222345555


Q ss_pred             EEEc
Q 044683          104 ILAL  107 (247)
Q Consensus       104 ~l~l  107 (247)
                      .|.+
T Consensus       180 ~L~l  183 (221)
T KOG3864|consen  180 RLHL  183 (221)
T ss_pred             HHHh
Confidence            5443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.48  E-value=0.0035  Score=48.25  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=41.1

Q ss_pred             ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683           22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS  101 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  101 (247)
                      +......+.||++.|++. .....+.. +..+..|+++.|.+. ..|..+.+...+.++++..|..+ ..|.+... .++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~  112 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH  112 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence            344455555555555554 33333332 444555555555554 44555555555555555555554 44544332 445


Q ss_pred             ccEEEccCC
Q 044683          102 LEILALSNN  110 (247)
Q Consensus       102 L~~l~l~~n  110 (247)
                      ++.++.-.+
T Consensus       113 ~k~~e~k~~  121 (326)
T KOG0473|consen  113 PKKNEQKKT  121 (326)
T ss_pred             cchhhhccC
Confidence            544444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.98  E-value=0.036  Score=26.33  Aligned_cols=15  Identities=47%  Similarity=0.638  Sum_probs=7.0

Q ss_pred             CCCcEEEccCCcccc
Q 044683            2 TSLKVLDASSNQLTG   16 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~   16 (247)
                      ++|++|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.73  E-value=0.017  Score=44.64  Aligned_cols=82  Identities=22%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ..+.||++.|.+. .....|.-+..+..|+++.|.+. ..|+.+.+ ...++.+++..|..+ ..|.++...+.+++++.
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            3456777777665 34455666677778888888887 78888776 667777888777777 67888888888888887


Q ss_pred             cCCccc
Q 044683           83 SHNQLT   88 (247)
Q Consensus        83 ~~n~~~   88 (247)
                      -.+.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=0.2  Score=37.95  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=23.2

Q ss_pred             cccEEEccCCccccCChHhhhcCCCCCEEeccCCc
Q 044683           52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ   86 (247)
Q Consensus        52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   86 (247)
                      .++.++.++..+..+.-..+..+++++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            35667777777765555666667777777666654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.80  E-value=1.4  Score=21.44  Aligned_cols=14  Identities=50%  Similarity=0.437  Sum_probs=11.1

Q ss_pred             CCCCEEEccCCcCc
Q 044683          158 ELLTILDLSNNTIF  171 (247)
Q Consensus       158 ~~L~~L~l~~n~l~  171 (247)
                      ++|++|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            56788888888886

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.14  E-value=1.4  Score=21.74  Aligned_cols=14  Identities=50%  Similarity=0.446  Sum_probs=10.4

Q ss_pred             CCCCEEEccCCcCc
Q 044683          158 ELLTILDLSNNTIF  171 (247)
Q Consensus       158 ~~L~~L~l~~n~l~  171 (247)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46778888888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-21
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-13
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 63/255 (24%)
Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVE------------IGT 48
           + +L +L  S+N  +GNI   L +   L  L ++ N   G IP              I  
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 49  YLLVFIH---------------------------------LNLSRNAFNGSIPSSFFDMK 75
              V+I                                   N++   + G    +F +  
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 76  MLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--------------LYLSDNR 121
            +  LD+S+N L+G IP+ + +  + L IL L +N + G              L LS N+
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN-TIFGT-LPSCFR 179
           L GRIP+ +  L  L +I + NNNL GPIP E  Q E        NN  + G  LP C  
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Query: 180 TSSFVKKQDRRTVGK 194
           +++      +R+ G+
Sbjct: 748 SNADGYAHHQRSHGR 762

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 19/200 (9%)
Query: 2   TSLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
            SL  LD SSN  +G I PNLC+     L+ELY+ NN   G IP  + +     + L+LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLS 426
Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG----- 114
            N  +G+IPSS   +  L+ L +  N L GEIP+ +     +LE L L  N L G     
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSG 485
Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                    + LS+NRL G IP+W+G L  L  + + NN+  G IP E      L  LDL
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 166 SNNTIFGTLPSC-FRTSSFV 184
           + N   GT+P+  F+ S  +
Sbjct: 546 NTNLFNGTIPAAMFKQSGKI 565

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD S N L+G + P++  L  L  +  D N + G IP   G++  +F  + +SR
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG-------------CFSLEILAL 107
           N   G IP +F ++  L  +D+S N L G+      +               F L  + L
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
           S N L GL L +NR++G +P+ L  L  L  + +  NNL G IP +   L+   +   +N
Sbjct: 243 SKN-LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300
Query: 168 NTIF--GTLPSC 177
           N       LP+C
Sbjct: 301 NKCLCGSPLPAC 312

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 5   KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN 64
           K LD  SN+L+   S     L  LR LY+++N L+  +P  I   L     L ++ N   
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 65  GSIPSSFFDMKM-LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL-------- 115
            ++P   FD  + L  L +  NQL   +P R+      L  L+L  N LQ L        
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 116 -YLSDNRLFG----RIPR-WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
             L + RL+     R+P      L  L+ + + NN L+      F  LE L +L L  N 
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 170 IFGTLPSCFRTSSFVKKQDRRTVG 193
              T       + ++KK+    +G
Sbjct: 217 WDCTCNGIIYMAKWLKKKADEGLG 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (414), Expect = 2e-46
 Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 22/195 (11%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL--LRELYIDNNDLRGHIPVEIG--TYLLVFIHLN 57
            SL  LD SSN  +G I PNLC+     L+ELY+ NN   G IP  +   + L   + L+
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL---VSLH 424

Query: 58  LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--- 114
           LS N  +G+IPSS   +  L+ L +  N L GEIP+ +     +LE L L  N L G   
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIP 483

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                      + LS+NRL G IP+W+G L  L  + + NN+  G IP E      L  L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

Query: 164 DLSNNTIFGTLPSCF 178
           DL+ N   GT+P+  
Sbjct: 544 DLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (399), Expect = 3e-44
 Identities = 62/198 (31%), Positives = 86/198 (43%), Gaps = 23/198 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLN 57
           + SL+ L  + N+ TG I   L      L  L +  N   G +P   G  + L     L 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL---ESLA 324

Query: 58  LSRNAFNGSIP-SSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-- 114
           LS N F+G +P  +   M+ LK LD+S N+ +GE+PE +     SL  L LS+N+  G  
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 115 --------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160
                         LYL +N   G+IP  L N   L  + +  N L G IP     L  L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 161 TILDLSNNTIFGTLPSCF 178
             L L  N + G +P   
Sbjct: 445 RDLKLWLNMLEGEIPQEL 462

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (398), Expect = 4e-44
 Identities = 61/195 (31%), Positives = 83/195 (42%), Gaps = 19/195 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            T LK+L+ SSNQ  G I P   +   L+ L +  N   G IP  +         L+LS 
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N F G++P  F    +L+SL +S N  +GE+P         L++L LS N   G      
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 115 ---------LYLSDNRLFGRIPRWLGN--LLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                    L LS N   G I   L       L+++ + NN   G IP        L  L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 164 DLSNNTIFGTLPSCF 178
            LS N + GT+PS  
Sbjct: 424 HLSFNYLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (374), Expect = 9e-41
 Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 18/199 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
            + L+ L  SSN  +G +  + L ++  L+ L +  N+  G +P  +       + L+LS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 60  RNAFNGSIPSSFFDMKM--LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--- 114
            N F+G I  +        L+ L + +N  TG+IP  + + C  L  L LS N L G   
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIP 435

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                      L L  N L G IP+ L  +  LE +++  N+L G IP        L  +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 164 DLSNNTIFGTLPSCFRTSS 182
            LSNN + G +P       
Sbjct: 496 SLSNNRLTGEIPKWIGRLE 514

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 1e-40
 Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 16/197 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +L+ L   +N  TG I P L     L  L++  N L G IP  +G+ L     L L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWL 451

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N   G IP     +K L++L +  N LTGEIP  ++  C +L  ++LSNN L G      
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWI 510

Query: 115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                   L LS+N   G IP  LG+  +L  + +  N   G IP    +       +  
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 167 NNTIFGTLPSCFRTSSF 183
               +  + +       
Sbjct: 571 AGKRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (372), Expect = 1e-40
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 27/196 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNL 58
              LK L  S N+++G++   +   V L  L + +N+    IP  +G  + L    HL++
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSAL---QHLDI 230

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG---- 114
           S N  +G    +      LK L+IS NQ  G IP        SL+ L+L+ N   G    
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPD 287

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTI 162
                      L LS N  +G +P + G+   LE + + +NN  G +P++   ++  L +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 163 LDLSNNTIFGTLPSCF 178
           LDLS N   G LP   
Sbjct: 348 LDLSFNEFSGELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (344), Expect = 8e-37
 Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 18/200 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNL 58
           ++ L+ L    N L G I   L  +  L  L +D NDL G IP  +   T L     ++L
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL---NWISL 497

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG---- 114
           S N   G IP     ++ L  L +S+N  +G IP  +   C SL  L L+ N   G    
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPA 556

Query: 115 ------LYLSDNRLFGRIPRWLGNLLALEDIMMPNN--NLQGPIPIEFCQLELLTILDLS 166
                   ++ N + G+   ++ N    ++     N    QG    +  +L      +++
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 167 NNTIFGTLPSCFRTSSFVKK 186
           +    G     F  +  +  
Sbjct: 617 SRVYGGHTSPTFDNNGSMMF 636

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (332), Expect = 4e-35
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 20/194 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIP--VEIGTYLLVFIHLNL 58
           +T L+ L  S++ + G++         L  L +  N L G +     +G+       LN+
Sbjct: 76  LTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNV 133

Query: 59  SRNAFNGSIP-SSFFDMKMLKSLDISHNQLTGEIPE--RMATGCFSLEILALSNNSLQG- 114
           S N  +     S    +  L+ LD+S N ++G       ++ GC  L+ LA+S N + G 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                      L +S N     IP +LG+  AL+ + +  N L G           L +L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 164 DLSNNTIFGTLPSC 177
           ++S+N   G +P  
Sbjct: 253 NISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (329), Expect = 8e-35
 Identities = 48/189 (25%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNL 58
           + +L+ L    N LTG I   L     L  + + NN L G IP  IG    L +   L L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI---LKL 521

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA-----------TGCFSLEILAL 107
           S N+F+G+IP+   D + L  LD++ N   G IP  M             G   + I   
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
                     +     G     L  L       + +    G     F     +  LD+S 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 168 NTIFGTLPS 176
           N + G +P 
Sbjct: 642 NMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  122 bits (308), Expect = 6e-32
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 27/199 (13%)

Query: 2   TSLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
             +  +D SS  L      +S +L  L  L  L++ N+ + G +             L+L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSLDL 107

Query: 59  SRNAFNGSIPS--SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-- 114
           SRN+ +G + +  S      LK L++S N L             SLE+L LS NS+ G  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 115 ---------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
                          L +S N++ G +   +   + LE + + +NN    IP        
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSA 224

Query: 160 LTILDLSNNTIFGTLPSCF 178
           L  LD+S N + G      
Sbjct: 225 LQHLDISGNKLSGDFSRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 4e-29
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS 66
              +  +  G  S  L  L       I +    GH            + L++S N  +G 
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGY 647

Query: 67  IPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN-NSLQGLYLSDNRLFGR 125
           IP     M  L  L++ HN ++G IP+             + +   L  L LS N+L GR
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGR 695

Query: 126 IPRWLGNLLALEDIMMPNNNLQGPIP 151
           IP+ +  L  L +I + NNNL GPIP
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (271), Expect = 6e-27
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +++    + +S    G+ SP       +  L +  N L G+IP EIG  +     LNL  
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGH 665

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N  +GSIP    D++ L  LD+S N+L G IP+ M+           +   L  + LS+N
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-----------ALTMLTEIDLSNN 714

Query: 121 RLFGRIPR 128
            L G IP 
Sbjct: 715 NLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 54  IHLNLSRNAFN---GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
             ++LS    N    ++ SS   +  L+SL +S++ + G +                ++ 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS----------GFKCSAS- 101

Query: 111 SLQGLYLSDNRLFGRIP--RWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSN 167
            L  L LS N L G +     LG+   L+ + + +N L  P  +    +L  L +LDLS 
Sbjct: 102 -LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 168 NTIFGTLPSCFRTSS 182
           N+I G     +  S 
Sbjct: 161 NSISGANVVGWVLSD 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (372), Expect = 5e-43
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L  L  +   ++G I   L ++  L  L    N L G +P  I   L   + +    
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDG 158

Query: 61  NAFNGSIPSSFFDMKML-KSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           N  +G+IP S+     L  S+ IS N+LTG+IP               +N +L  + LS 
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP------------TFANLNLAFVDLSR 206

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
           N L G      G+    + I +  N+L   +  +    + L  LDL NN I+GTLP 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (366), Expect = 4e-42
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD S N L+G + P++  L  L  +  D N + G IP   G++  +F  + +SR
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
           N   G IP +F ++  L  +D+S N L G+      +   + + + L+ NSL        
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGKVG 241

Query: 115 -------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
                  L L +NR++G +P+ L  L  L  + +  NNL G IP     L+   +   +N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYAN 300

Query: 168 NTIF--GTLPSC 177
           N       LP+C
Sbjct: 301 NKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (320), Expect = 2e-35
 Identities = 58/184 (31%), Positives = 79/184 (42%), Gaps = 21/184 (11%)

Query: 1   MTSLKVLDASSNQLTG--NISPNLCELVLLRELYI-DNNDLRGHIPVEIG--TYLLVFIH 55
              +  LD S   L     I  +L  L  L  LYI   N+L G IP  I   T L    +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL---HY 105

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           L ++    +G+IP     +K L +LD S+N L+G +P           I +L N  L G+
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP---------SISSLPN--LVGI 154

Query: 116 YLSDNRLFGRIPRWLGNLLAL-EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL 174
               NR+ G IP   G+   L   + +  N L G IP  F  L L   +DLS N + G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDA 213

Query: 175 PSCF 178
              F
Sbjct: 214 SVLF 217

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (294), Expect = 2e-31
 Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 20/178 (11%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRG--HIPVEIG--TYLLVFIHLNLS-RN 61
            D  +    G +     +   +  L +   +L     IP  +    YL     L +   N
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL---NFLYIGGIN 87

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNR 121
              G IP +   +  L  L I+H  ++G IP+          +  +    L  L  S N 
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---------FLSQIKT--LVTLDFSYNA 136

Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQL-ELLTILDLSNNTIFGTLPSCF 178
           L G +P  + +L  L  I    N + G IP  +    +L T + +S N + G +P  F
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 3e-29
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 16/191 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            TSLK LD S N +   +S N   L  L  L   +++L+      +   L   I+L++S 
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
                +    F  +  L+ L ++ N         + T   +L  L LS            
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 111 ----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE-LLTILDL 165
               SLQ L +S N  F         L +L+ +    N++      E       L  L+L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 166 SNNTIFGTLPS 176
           + N    T   
Sbjct: 551 TQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (250), Expect = 3e-24
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNL 58
             S K LD S N L    S +      L+ L +   +++          ++L     L L
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL---STLIL 83

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
           + N        +F  +  L+ L      L       +     +L+ L +++N +Q     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSF--- 139

Query: 119 DNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI----LDLSNNTIFGTL 174
                 ++P +  NL  LE + + +N +Q     +   L  + +    LDLS N +    
Sbjct: 140 ------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 175 PSCFRTSSFVK 185
           P  F+     K
Sbjct: 194 PGAFKEIRLHK 204

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 42/195 (21%), Positives = 66/195 (33%), Gaps = 22/195 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
               + L+  + +     +  L  L  L            +   E+    L F+ L+ + 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNG 358

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
            +F G    S F    LK LD+S N +       +  G   LE L   ++          
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSV 416

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILD 164
                +L  L +S              L +LE + M  N+ Q    P  F +L  LT LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 165 LSNNTIFGTLPSCFR 179
           LS   +    P+ F 
Sbjct: 477 LSQCQLEQLSPTAFN 491

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD S        +     L  L  L +  N  + +   +I T L     L+LS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN-NSLQGLYLSD 119
                  P++F  +  L+ L++SHN                         NSLQ L  S 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------PYKCLNSLQVLDYSL 527

Query: 120 NRLFGRIPRWLGNLL-ALEDIMMPNNNLQGPIPIE--FCQLELLTILDLSNNTIFGTLPS 176
           N +     + L +   +L  + +  N+       +     ++    L +    +    PS
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 177 CFR 179
             +
Sbjct: 588 DKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 6e-21
 Identities = 36/191 (18%), Positives = 57/191 (29%), Gaps = 21/191 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              L+VLD S  ++          L  L  L +  N ++          L     L    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVE 109

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
                        +K LK L+++HN +         +   +LE L LS+N +Q       
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 115 ------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLT 161
                       L LS N +   I       + L  + + NN     +     Q L  L 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 162 ILDLSNNTIFG 172
           +  L       
Sbjct: 229 VHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 12/188 (6%)

Query: 1   MTSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYL-LVFIHL 56
           + +LK L+ + N +    +      L  L  L + +N ++     ++     + L+ + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 57  NLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-- 114
           +LS N  N   P +F +++ L  L + +N  +  + +    G   LE+  L     +   
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 115 -LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
            L   D      +         L       +     I   F  L  ++   L + TI   
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAY----LDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 174 LPSCFRTS 181
               +   
Sbjct: 298 KDFSYNFG 305

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 32/201 (15%), Positives = 55/201 (27%), Gaps = 23/201 (11%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEI-------GTYLLVF 53
             L  L   +N  + N+     + L  L    +   + R    +E        G   L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 54  IHLNLSR-NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
               L+  + +   I   F  +  + S  +    +         +  F  + L L N   
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCKF 316

Query: 113 QGL---------YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ--GPIPIEFCQLELLT 161
                        L+     G       +L +LE + +  N L   G           L 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 162 ILDLSNNTIFGTLPSCFRTSS 182
            LDLS N +     +      
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 20  PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79
           P +  +  +    ++ N     IP  +        +L+LS N        SFF    L+ 
Sbjct: 2   PCVEVVPNITYQCMELN-FY-KIPDNLPFST---KNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 80  LDISHNQLTGEIPERMATGCFSLEILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALED 138
           LD+S  ++                  A  + + L  L L+ N +          L +L+ 
Sbjct: 57  LDLSRCEIQTIEDG------------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 139 IMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
           ++    NL          L+ L  L++++N I      
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 2e-27
 Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLV-FIHLNLS 59
             +L  LD S N L+        +L  L+EL + NN ++     E+  +       L LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF--SLEILALSNNSLQG--- 114
            N      P  F  +  L  L +++ QL   + E++       S+  L+LSN+ L     
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 115 -------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161
                        L LS N L          L  LE   +  NN+Q         L  + 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 162 ILDLSNNTIFGTLPSC 177
            L+L  +    ++   
Sbjct: 300 YLNLKRSFTKQSISLA 315

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (269), Expect = 8e-27
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNN-----DLRGHIPVEIGTYLLVFIH 55
           +  L+ L+   N + G  S     L+ L+ L + N+      L     V +    L    
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH--I 385

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----- 110
           LNL++N  +     +F  +  L+ LD+  N++  E+  +   G  ++  + LS N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 111 ---------SLQGLYLSDNRL--FGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
                    SLQ L L    L      P     L  L  + + NNN+          LE 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 160 LTILDLSNNTI 170
           L ILDL +N +
Sbjct: 506 LEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 5e-26
 Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE---LVLLRELYIDNNDLRGHIPVEI-GTYLLVFIHL 56
           +  L  L  ++ QL  +++  LC       +R L + N+ L         G        L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 57  NLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
           +LS N  N     SF  +  L+   + +N +       +  G F++  L L  +      
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRS-FTKQS 311

Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           +S   L          L  LE + M +N++ G     F  L  L  L LSN+  
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 1e-24
 Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 21/194 (10%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            S +V D S  +LT  +  +L     +  L + +N LR         Y  +   L++  N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQL-TSLDVGFN 59

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
             +   P     + MLK L++ HN+L+  + ++    C +L  L L +NS+Q        
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 115 -------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL--LTILDL 165
                  L LS N L          L  L+++++ NN +Q     E        L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 166 SNNTIFGTLPSCFR 179
           S+N I    P CF 
Sbjct: 179 SSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (250), Expect = 3e-24
 Identities = 46/206 (22%), Positives = 69/206 (33%), Gaps = 27/206 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L+VLD   N++   ++      L  + E+Y+  N             +     L L 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLR 462

Query: 60  RNAFNG--SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------- 110
           R A     S PS F  ++ L  LD+S+N +     + +  G   LEIL L +N       
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHNNLARLWK 521

Query: 111 ---------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC 155
                           L  L L  N           +L  L+ I +  NNL       F 
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 156 QLELLTILDLSNNTIFGTLPSCFRTS 181
               L  L+L  N I       F  +
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPA 607

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 5e-24
 Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 21/198 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            + L  LD   N ++        +L +L+ L + +N+L          +      L+L  
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMS 106

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N+      + F   K L +LD+SHN L+            +L+ L LSNN          
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC---QLELLT 161
                 SL+ L LS N++    P     +  L  + + N  L   +  + C       + 
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 162 ILDLSNNTIFGTLPSCFR 179
            L LSN+ +  T  + F 
Sbjct: 226 NLSLSNSQLSTTSNTTFL 243

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 31/178 (17%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L +LD S+N +       L  L  L  L + +N+L                   L +
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWK 521

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN-NSLQGLYLSD 119
           +A  G        +  L  L++  N       E               +   L+ + L  
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVE------------VFKDLFELKIIDLGL 569

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELLTILDLSNNTIFGTLPS 176
           N L         N ++L+ + +  N +       F      LT LD+  N    T  S
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/91 (16%), Positives = 32/91 (35%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  LK++D   N L    +      V L+ L +  N +        G        L++  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEI 91
           N F+ +  S  + +  +     +  +L+   
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 1e-26
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 10/171 (5%)

Query: 1   MTSLKVLDASSNQL-TGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLN 57
              ++++    N L T  +  +L ++  L  L    N L G +P   G    L     LN
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS---LN 359

Query: 58  LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYL 117
           L+ N       +     + +++L  +HN+L        A     +  +  S N +  +  
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-- 417

Query: 118 SDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
            D + F  +       + +  I + NN +       F     L+ ++L  N
Sbjct: 418 -DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (264), Expect = 4e-26
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 37/211 (17%)

Query: 1   MTSLKVLDASSNQLTG-------NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF 53
           ++ +  +D S N++          + P   + + +  + + NN +      E+ +     
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPL 459

Query: 54  IHLNLSRNAFNG-------SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA 106
             +NL  N               +F +  +L S+D+  N+LT    +  AT    L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 107 LSNNSLQG-------------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           LS NS                           NR     P  +    +L  + + +N+++
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 148 GPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
             +  +      +++LD+ +N       S  
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 4e-25
 Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 31/202 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF------- 53
                 +   SN +T  +S  +  L  LR+ Y+ N+        E               
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 54  -----------IHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSL 102
                        + +        +P+    +  ++ ++++ N+      +         
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALA 299

Query: 103 EILALSNNSLQGLYLSDNRLF-GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161
           +        +Q +Y+  N L    +   L  +  L  +    N L+G +P  F     L 
Sbjct: 300 DAPVGEK--IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356

Query: 162 ILDLSNN-------TIFGTLPS 176
            L+L+ N          G    
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQ 378

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 16/182 (8%)

Query: 1   MTSLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRGHIPVEIG-TYLLVFIH 55
           +T L+VL   S+    N        +   +   +        +               I 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG- 114
             ++ +    SI  S         +    N +T  + + +      L    + N+     
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAE 221

Query: 115 --------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                         + +        NL  L D+ + N      +P     L  + +++++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 167 NN 168
            N
Sbjct: 282 CN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.3 bits (240), Expect = 6e-23
 Identities = 21/197 (10%), Positives = 51/197 (25%), Gaps = 26/197 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG----HIPVEIGTYLLVFIHL 56
              +  L       +G +   + +L  L  L + ++  +       P  I    +     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA-NMSDEQK 138

Query: 57  NLSRNAFNGSIPSSFFDMKM--LKSLDISHNQLTGEIPERMATGCFSLEILALSNN---- 110
              R  +  +            L    I+ +     I +  +        +   +N    
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF 197

Query: 111 ---------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161
                     L+  Y+ ++                E              +++  L+ LT
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLT 252

Query: 162 ILDLSNNTIFGTLPSCF 178
            +++ N      LP+  
Sbjct: 253 DVEVYNCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 7e-20
 Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 21/153 (13%)

Query: 1   MTSLKVLDASSNQLTGNISP-NLCELVLLRELYIDNNDLRGHIPVEIG-----TYLLVFI 54
              L  +D   N+LT          L  L  + +  N      P +           +  
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
             +   N      P        L  L I  N +   + E         +I      ++  
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE---------KIT----PNISV 591

Query: 115 LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           L + DN        ++   +     M+  +  Q
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 4/73 (5%)

Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTIL 163
           SN  + GL L      GR+P  +G L  LE + + ++  +       P            
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 164 DLSNNTIFGTLPS 176
                    T   
Sbjct: 139 QKMRMHYQKTFVD 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.7 bits (249), Expect = 4e-24
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 15/182 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             SL+ LD S N     +S N   L  L+ L   ++ L+          L   ++L++S 
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
                     F  +  L +L ++ N         +     +L  L LS            
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 111 ----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                LQ L +S N L          L +L  +    N ++    I     + L   +L+
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 167 NN 168
           NN
Sbjct: 554 NN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 1   MTSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYL----LVFIH 55
           + +LK L+ + N +    +      L  L  + +  N ++  I V    +L     V + 
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLS 185

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           L++S N  +     +F  +K L  L +  N  +  I +        L +  L     +  
Sbjct: 186 LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 116 YLSDNRLFGRIPRWLGNL--LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
                 L    P  +  L  + +++  +   N      ++F  L  ++ + L+  +I   
Sbjct: 245 ----RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 174 LPSCFRTS 181
                   
Sbjct: 301 EDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNLS 59
           +S K +D S N L    S +      L+ L +   ++            +L    +L L+
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL---SNLILT 88

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
            N      P SF  +  L++L     +L   +         +L+ L +++N +       
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSC---- 143

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE----LLTILDLSNNTIFGTLP 175
                ++P +  NL  L  + +  N +Q     +   L     +   LD+S N I     
Sbjct: 144 -----KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 176 SCFRTSSF 183
             F+    
Sbjct: 199 QAFQGIKL 206

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 26/197 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
               + L     QL    + +L  L   + L +  N        ++    L +  L+LSR
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGS-ISFKKVALPSLSY--LDLSR 359

Query: 61  NAFNGSIPSSFFDMKM--LKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
           NA + S   S+ D+    L+ LD+S N     I      G   L+ L   ++        
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 111 -------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTI 162
                   L  L +S              L +L  + M  N+ +       F     LT 
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 163 LDLSNNTIFGTLPSCFR 179
           LDLS   +       F 
Sbjct: 478 LDLSKCQLEQISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 7e-17
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 21/191 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            + L+ LD S  ++          L  L  L +  N ++        + L    +L    
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVE 113

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
                        +  LK L+++HN +         +   +L  + LS N +Q       
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 115 ------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLT 161
                       L +S N +   I       + L ++ +  N     I     Q L  L 
Sbjct: 174 QFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 162 ILDLSNNTIFG 172
           +  L       
Sbjct: 233 VHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L+ LD   + L      +    L  L  L I   + +      I   L     L ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMA 456

Query: 60  RNAFNGSIPSSFF-DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
            N+F  +  S+ F +   L  LD+S  QL  +I   +      L++L +S+N        
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
                 SL  L  S NR+            +L    + NN++
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 9e-16
 Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 26/189 (13%)

Query: 3   SLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEI-------GTYLLVFI 54
            L  L    N  + NI     + L  L    +   + +    +EI       G   +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---- 110
              L+           F  +  + ++ ++   +   + +      F  + L++       
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED--VPKHFKWQSLSIIRCQLKQ 321

Query: 111 -------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL--LT 161
                   L+ L L+ N+    I      L +L  + +  N L       +  L    L 
Sbjct: 322 FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 162 ILDLSNNTI 170
            LDLS N  
Sbjct: 380 HLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 54  IHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           I         +  +P         K++D+S N L   +     +    L+ L LS   ++
Sbjct: 14  ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIE 69

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
            +            +    L  L ++++  N +Q   P  F  L  L  L      +   
Sbjct: 70  TI----------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 174 LPSCFR 179
                 
Sbjct: 120 ESFPIG 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            T+L  LD S  QL          L  L+ L + +N+L   +       L     L+ S 
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSF 530

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLT 88
           N    S        K L   ++++N + 
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.8 bits (246), Expect = 9e-24
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 25/200 (12%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
              +  ++   +   N   +   L  L ++ + N      +P  +   L     LN++ N
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACN 525

Query: 62  AFNG---------SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-- 110
                         +         ++   + +N L              L +L   +N  
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 111 ----------SLQGLYLSDNRLFGRIPRWLGNLL-ALEDIMMPNNNLQG-PIPIEFCQLE 158
                      L  L L  N++   IP         +E +   +N L+  P       + 
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 159 LLTILDLSNNTIFGTLPSCF 178
           ++  +D S N I     +  
Sbjct: 645 VMGSVDFSYNKIGSEGRNIS 664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.7 bits (238), Expect = 1e-22
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 35/214 (16%)

Query: 1   MTSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              +++     N L     S +L ++V L  L   +N +R H+        L    L L 
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLT--DLKLD 603

Query: 60  RNAFNGSIPSSFF-DMKMLKSLDISHNQLTGEIPERMA-TGCFSLEILALSNNSLQG--- 114
            N     IP  F      ++ L  SHN+L   IP        + +  +  S N +     
Sbjct: 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 115 ----------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ-------GPIP 151
                           + LS N +             +  I++ NN +         P  
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 152 IEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVK 185
             +    LLT +DL  N +  +L   FR ++   
Sbjct: 722 GNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 1e-22
 Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 20/179 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI------ 54
             +   +  S N++    +        +  + + NN +   IP                 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730

Query: 55  -HLNLSRNAFNGSIPSSFF--DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS 111
             ++L  N    S+   F    +  L ++D+S+N  +   P +       L+   + +  
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL-NSSQLKAFGIRHQ- 786

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
                   NR+  + P  +    +L  + + +N+++  +  +      L ILD+++N  
Sbjct: 787 ---RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 3e-21
 Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 34/216 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI------ 54
           +  L  ++  +      +   L +L  L+ L I  N       ++     L         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 55  --HLNLSRNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN- 110
                +  N       S S   M  L  LD  HN++   +          L  L L  N 
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKLTDLKLDYNQ 606

Query: 111 -------------SLQGLYLSDNRLFGRIPRW--LGNLLALEDIMMPNNNLQG-----PI 150
                         ++GL  S N+L   IP      ++  +  +    N +         
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 151 PIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKK 186
            ++  +    + + LS N I       F T S +  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 3e-21
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 34/206 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L+++  +++  T +      E         D      +  +     L     + L  
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSN-LKDLTDVELYN 500

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA--------TGCFSLEILALSNN-- 110
                 +P   +D+  L+SL+I+ N+       +               ++I  +  N  
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 111 -------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ- 156
                         L  L    N++  R     G  + L D+ +  N ++  IP +FC  
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAF 617

Query: 157 LELLTILDLSNNTIFGTLPSCFRTSS 182
            + +  L  S+N +   +P+ F   S
Sbjct: 618 TDQVEGLGFSHNKL-KYIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 16/196 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T LKVL   ++  T +      E +         + +R H       Y       +L +
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 61  NAFN-----GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           +A N       I            +    N++T  I + +      L+I+  +N+     
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYD 463

Query: 116 ---------YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                         + +        NL  L D+ + N      +P     L  L  L+++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523

Query: 167 NNTIFGTLPSCFRTSS 182
            N            + 
Sbjct: 524 CNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 7e-20
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 24/196 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              +  L  +     G +   + +L  L+ L    +          G   L        +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERK 380

Query: 61  NAFNGSIPSSFFDM-KMLKSLDISHNQLT-----GEIPERMATGCFSLEILALSNN---- 110
           +         F D  + L   D+  + +        I +         +I  L+N     
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 111 --------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
                    LQ +Y +++        +    +  ED             + +  L+ LT 
Sbjct: 441 SKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 163 LDLSNNTIFGTLPSCF 178
           ++L N      LP   
Sbjct: 496 VELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 1   MTSLKVLDASSNQLT-------GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF 53
            + +  +  S+N +T            N     LL  + +  N L   +  +     L +
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 54  I-HLNLSRNAFNGSIPSSFFDMKMLKSLDISH------NQLTGEIPERMATGCFSLEILA 106
           + ++++S N F+ S P+   +   LK+  I H      N++  + P  +   C SL  L 
Sbjct: 755 LSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQ 812

Query: 107 LSNN-----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           + +N            L  L ++DN         +   +     ++  +  Q
Sbjct: 813 IGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
           +N  + GL L+     GR+P  +G L  L+ +    ++      +   +     + +   
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 168 NTIFGTLPSCF 178
           + I       F
Sbjct: 381 HRIRMHYKKMF 391

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 14/117 (11%)

Query: 78  KSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD-------------NRLFG 124
            ++ I   +    I +  A      E L   N       +++             +    
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGD 313

Query: 125 RIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS 181
           +    L N   +  + +     +G +P    QL  L +L    ++   +        
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +++L+ LD ++N +       L     +  L+  NN++   +    G       ++ L+ 
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQGK---KNIYLAN 129

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N               ++ LD+  N++       +A    +LE L L  N          
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L+ L LS N+L   +     +   +  I + NN L   I       + L   DL  N
Sbjct: 190 FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247

Query: 169 TI 170
             
Sbjct: 248 GF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 21/182 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
               K+   + + L   ++        ++EL +  N L   I             LNLS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N            +  L++LD+++N +  E+         S+E L  +NN          
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSRG 119

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILDLSNN 168
              + +YL++N++        G    ++ + +  N +            + L  L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 169 TI 170
            I
Sbjct: 180 FI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +L+ L+   N +  ++   +     L+ L + +N L   +  E          ++L  
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRN 223

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N     I  +    + L+  D+  N             C +L      N  +Q +     
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH----------CGTLRDFFSKNQRVQTVAKQTV 272

Query: 121 R 121
           +
Sbjct: 273 K 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 22/119 (18%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------S 111
           +I     +    K   ++ + L  +    +    ++++ L LS N               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           L+ L LS N L+  +   L +L  L  + + NN +Q     E      +  L  +NN I
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 2e-21
 Identities = 40/195 (20%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            S++ ++   +      S        L+EL +    L   +P  +   L     L LS N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSAN 311

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
            F      S  +   L  L I  N    E+         +L  L LS++           
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILD 164
                 LQ L LS N               LE + +    L+       F  L LL +L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 165 LSNNTIFGTLPSCFR 179
           LS++ +  +    F 
Sbjct: 432 LSHSLLDISSEQLFD 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.2 bits (227), Expect = 3e-21
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 23/202 (11%)

Query: 1   MTSLKVLDASSNQLT--GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
           + +L+ LD S + +      +  L  L  L+ L +  N+    +  E          L+L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDL 407

Query: 59  SRNAFNGSIPSSFF-DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------- 110
           +          S F ++ +LK L++SH+ L     E++  G  +L+ L L  N       
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 111 ----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160
                      L+ L LS   L         +L  +  + + +N L          L+ +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 161 TILDLSNNTIFGTLPSCFRTSS 182
             L+L++N I   LPS     S
Sbjct: 527 Y-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 9e-21
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH-LNL 58
             SL  L    N     +    L  L  LREL + ++D+       +    L  +  LNL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
           S N        +F +   L+ LD++  +L  +  +        L++L LS++        
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 111 ------SLQGLYLSDNRLFGRI---PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161
                 +LQ L L  N            L  L  LE +++   +L       F  L+++ 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 162 ILDLSNNTIFGTLPSCFRTSS 182
            +DLS+N +  +         
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 5e-20
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 20/197 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLS 59
             +L+ L   SN ++    P       L+ L   NN +      ++ +      + LNL+
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA-TGCFSLEILALSNN-------- 110
            N     I    FD  + +SL+    Q    I + +  +   SL +    +         
Sbjct: 188 GNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 111 --------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
                   S++ + L  +  F            L+++ +   +L   +P     L  L  
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKK 305

Query: 163 LDLSNNTIFGTLPSCFR 179
           L LS N           
Sbjct: 306 LVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 21/196 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD +  Q+             L  L +  N L   +     +      HL   +
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQ 114

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------ 114
              +        + K L+SL +  N ++  I          L++L   NN++        
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 115 ----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP--IEFCQLELLTI 162
                     L L+ N +   I     +    + +          I   ++   ++ L +
Sbjct: 174 SSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 163 LDLSNNTIFGTLPSCF 178
               +       P+ F
Sbjct: 233 GTFEDMDDEDISPAVF 248

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVL--LRELYIDNNDLRGHIPVEI-GTYLLVFIHLN 57
               + L+    Q    I   L    +  L     ++ D     P    G   +    +N
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 58  LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------- 110
           L ++ F     ++F     L+ LD++   L+ E+P  +  G  +L+ L LS N       
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQ 318

Query: 111 -------SLQGLYLSDNRLFGRI-PRWLGNLLALEDIMMPNNNLQ--GPIPIEFCQLELL 160
                  SL  L +  N     +    L NL  L ++ + +++++      ++   L  L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 161 TILDLSNNTI 170
             L+LS N  
Sbjct: 379 QSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 6e-18
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 15/175 (8%)

Query: 5   KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN 64
           K  +  +  L   I   L        L    N L   I     + L+    L+L+R    
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 65  GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFG 124
                +F     L +L ++ N L   + E   +G  +L+ L      +  +         
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSI--------- 120

Query: 125 RIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR 179
                L N   LE + + +N++      +    E L +LD  NN I         
Sbjct: 121 -DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 6e-18
 Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 16/185 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            S + L+ S N L    +     L+ L  L +    +   I  +          L L+ N
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTAN 91

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN-NSLQGLYLSDN 120
                  ++    K LK L      ++                  L N  +L+ LYL  N
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFI------------PLHNQKTLESLYLGSN 139

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI--LDLSNNTIFGTLPSCF 178
            +             L+ +   NN +      +   L+  T   L+L+ N I G  P  F
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 179 RTSSF 183
            ++ F
Sbjct: 200 DSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              L++LD +  +L    + +    L LL+ L + ++ L      ++   L    HLNL 
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQ 457

Query: 60  RNAFNGSI---PSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-- 114
            N F        +S   +  L+ L +S   L+  I +   T    +  + LS+N L    
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 115 -----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                      L L+ N +   +P  L  L     I +  N L       +     L   
Sbjct: 517 IEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY----FLEWY 572

Query: 164 DLSNNTI 170
             +   +
Sbjct: 573 KENMQKL 579

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 16/165 (9%)

Query: 19  SPNLC-ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKML 77
           S   C E  + +    +N  L   IP  +         L  S N       ++F  +  L
Sbjct: 4   SDQKCIEKEVNKTYNCENLGLN-EIPGTLPNST---ECLEFSFNVLPTIQNTTFSRLINL 59

Query: 78  KSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALE 137
             LD++  Q+   I E        L+ L L+ N L  +              L    AL+
Sbjct: 60  TFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFM----------AETALSGPKALK 108

Query: 138 DIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS 182
            +      +     I     + L  L L +N I          + 
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 9e-21
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 26/199 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
                 L+  S  L          L  L+ + ID   L   +P  +         L L+R
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLAR 136

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE--------RMATGCFSLEILALSNN-- 110
           N    ++P+S   +  L+ L I       E+PE            G  +L+ L L     
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 111 -----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
                      +L+ L + ++ L   +   + +L  LE++ +         P  F     
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 160 LTILDLSNNTIFGTLPSCF 178
           L  L L + +   TLP   
Sbjct: 255 LKRLILKDCSNLLTLPLDI 273

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 27/201 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           ++ L+ +   +  L   +   + +   L  L +  N LR  +P  I   L     L++  
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRA 159

Query: 61  NAFNGSIPSSF---------FDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN- 110
                 +P              +  L+SL +    +   +P  +A    +L+ L + N+ 
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSP 217

Query: 111 ------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE 158
                        L+ L L         P   G    L+ +++ + +    +P++  +L 
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 159 LLTILDLSNNTIFGTLPSCFR 179
            L  LDL        LPS   
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIA 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 9e-20
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 26/190 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI------ 54
              L+ L  + N L   +  ++  L  LREL I        +P  + +            
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 55  --HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-- 110
              L L       S+P+S  +++ LKSL I ++ L+  +   +      LE L L     
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTA 241

Query: 111 ------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE 158
                        L+ L L D      +P  +  L  LE + +        +P    QL 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 159 LLTILDLSNN 168
              I+ +  +
Sbjct: 302 ANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 29/193 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLS 59
           ++  +    +      +           +        L+      +        + L L 
Sbjct: 32  LSQWQRHYNADRNRWHSAW-RQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELR 89

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
                   P   F +  L+ + I    L  E+P+ M      LE L L+ N         
Sbjct: 90  SVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLRALPASI 146

Query: 111 ----SLQGLYLSDNRLFGRIPRWLGNLLA---------LEDIMMPNNNLQGPIPIEFCQL 157
                L+ L +        +P  L +  A         L+ + +    ++  +P     L
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANL 205

Query: 158 ELLTILDLSNNTI 170
           + L  L + N+ +
Sbjct: 206 QNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYI-DNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L+ LD        N  P       L+ L + D ++L   +P++I   L     L+L 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIH-RLTQLEKLDLR 285

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPER 94
                  +PS    +     + +  +        R
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 7e-20
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +++L+ LD ++N +       L     +  L+  NN++   +    G       ++ L+ 
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQGK---KNIYLAN 129

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N               ++ LD+  N++       +A    +LE L L  N          
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L+ L LS N+L   +     +   +  I + NN L   I       + L   DL  N
Sbjct: 190 FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247

Query: 169 TI 170
             
Sbjct: 248 GF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 21/182 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
               K+   + + L   ++        ++EL +  N L      ++         LNLS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSS 67

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N            +  L++LD+++N +  E+         S+E L  +NN          
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSRG 119

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILDLSNN 168
              + +YL++N++        G    ++ + +  N +            + L  L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 169 TI 170
            I
Sbjct: 180 FI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 23/200 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              LK LD SSN+L   + P       +  + + NN L   I   +        H +L  
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRG 246

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS--------- 111
           N F+      FF  K  +   ++   +  ++  +    C    +                
Sbjct: 247 NGFHCGTLRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 112 --LQGLYLSDNRL-------FGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
             L  L   ++ L         R+     N     +I       +  I     + +    
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 163 LDLSNNTIFGTLPSCFRTSS 182
           L+     +   + +  R  +
Sbjct: 365 LEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 21/195 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +L+ L+   N +  ++   +     L+ L + +N L   +  E          ++L  
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRN 223

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS--------- 111
           N     I  +    + L+  D+  N           +    ++ +A              
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 112 ---LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG----PIPIEFCQLELLTILD 164
                  +            +   L+AL+       + QG     +  E         +D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 165 LSNNTIFGTLPSCFR 179
                    +     
Sbjct: 343 ALKEQYRTVIDQVTL 357

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGR 125
           +I     +    K   ++ + L  +    +    ++++ L LS N L  +          
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQI---------- 49

Query: 126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
               L     LE + + +N L   +      L  L  LDL+NN +
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 13/149 (8%), Positives = 36/149 (24%), Gaps = 2/149 (1%)

Query: 1   MTSLKVLDASSNQ-LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              ++ +   + + LTG          L         DL       +         L   
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           + +    +     +    + +D    Q    + +++     +   L     +L     + 
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQG 148
            R    +   L   +   ++         
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSP 408

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 8e-20
 Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 24/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L  L  + NQ+       L  L  L       N +    PV     +     L +  
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVA---NMTRLNSLKIGN 230

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N      P    ++  L  L+I  NQ++  I          L++L + +N          
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD-INA--VKDLTKLKMLNVGSNQISDISVLNN 285

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L  L+L++N+L       +G L  L  + +  N++    P+    L  +   D +N 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQ 343

Query: 169 TI 170
            I
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 1e-18
 Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           MT L  L  + +++       +  L  L  L ++ N +    P+     L    +     
Sbjct: 154 MTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYV 208

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N      P    +M  L SL I +N++T   P         L  L +  N          
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISDINAVKD 263

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L+ L +  N++       L NL  L  + + NN L          L  LT L LS N
Sbjct: 264 LTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 169 TI 170
            I
Sbjct: 322 HI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L  L   +N++T      L  L  LRELY++ +++    P+   T +     LNL  
Sbjct: 87  LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLTKM---YSLNLGA 141

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N  N S  S   +M  L  L ++ +++    P         L  L+L+ N          
Sbjct: 142 N-HNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLAS 197

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             SL       N++    P  + N+  L  + + NN +    P+    L  LT L++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTN 253

Query: 169 TI 170
            I
Sbjct: 254 QI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.0 bits (201), Expect = 4e-18
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T +  L+  +N    ++SP L  +  L  L +  + ++   P+   T L     L+L+ 
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDL---YSLSLNY 186

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N      P     +  L       NQ+T   P         L  L + NN          
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSPLAN 241

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L  L +  N++       + +L  L+ + + +N +     +    L  L  L L+NN
Sbjct: 242 LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNN 297

Query: 169 TIFGTLPSCF 178
            +        
Sbjct: 298 QLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 27/183 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + S+  L  +  ++  +I   +  L  L  L ++ N +    P+     L    +L +  
Sbjct: 43  LESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKL---TNLYIGT 97

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    +  S+  ++  L+ L ++ + ++   P         +  L L  N          
Sbjct: 98  NKI--TDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLS 152

Query: 111 ---SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
               L  L ++++++    P  + NL  L  + +  N ++   P     L  L       
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208

Query: 168 NTI 170
           N I
Sbjct: 209 NQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
              L      +   I P   +L       +    +   +  E    +     L ++    
Sbjct: 2   AATLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVTQEELESI---TKLVVAGEKV 56

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------S 111
             +       +  L+ L+++ NQ+T   P    +    L  L +  N            +
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           L+ LYL+++ +    P  L NL  +  + +  N+    +      +  L  L ++ + +
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           ++ L  L+  +NQ++ +I+  + +L  L+ L + +N +     +   + L     L L+ 
Sbjct: 242 LSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISDISVLNNLSQL---NSLFLNN 296

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           N            +  L +L +S N +T   P         ++    +N  ++
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 8e-19
 Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 18/185 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              L+ L+ + N ++  + P     L  LR L + +N L+  IP+ + T L     L++S
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N     +   F D+  LKSL++  N L   I  R  +G  SLE L L            
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                 L  L L    +          L  L+ + + +      +         LT L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 166 SNNTI 170
           ++  +
Sbjct: 232 THCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 18/185 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +LK L+   N L   IS      L  L +L ++  +L   IP E  ++L   I L L 
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
               N     SF  +  LK L+ISH      +      G  +L  L++++          
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA 243

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                 L+ L LS N +       L  LL L++I +    L    P  F  L  L +L++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 166 SNNTI 170
           S N +
Sbjct: 304 SGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           T  ++LD   N++   ++ +       L EL ++ N +   +       L     L L  
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N     IP   F  +  L  LDIS N++   + + M    ++L+ L + +N         
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                SL+ L L    L       L +L  L  + + + N+       F +L  L +L++
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 166 SNNTIFGTLPSCF 178
           S+     T+    
Sbjct: 208 SHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 3   SLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
             + +     +       I          R L +  N ++  +  +          L L+
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTET------RLLDLGKNRIK-TLNQDEFASFPHLEELELN 64

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N  +   P +F ++  L++L +  N+L   IP  + TG  +L  L +S N         
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILD 164
                +L+ L + DN L     R    L +LE + +   NL   IP E    L  L +L 
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLR 182

Query: 165 LSNNTIFGTLPSCFR 179
           L +  I       F+
Sbjct: 183 LRHLNINAIRDYSFK 197

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  LKVL+ S       ++PN    + L  L I + +L   +P     +L+    LNLS 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N  +    S   ++  L+ + +   QL   +      G   L +L +S N          
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 111 ----SLQGLYLSDNRL 122
               +L+ L L  N L
Sbjct: 317 HSVGNLETLILDSNPL 332

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L+ LD SSN+++      L +L  L  L   NN +    P+ I T L     L+L+ 
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 230

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N        +   +  L  LD+++NQ++   P    +G   L  L L  N          
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAG 285

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L  L L++N+L    P  + NL  L  + +  NN+    P+    L  L  L   NN
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNN 341

Query: 169 TI 170
            +
Sbjct: 342 KV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 9e-17
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 25/181 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  ++ S+NQLT      L  L  L ++ ++NN +    P+   T L     L L  
Sbjct: 67  LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL---TGLTLFN 121

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N      P    ++  L  L++S N ++        +G  SL+ L+  N           
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISDISAL---SGLTSLQQLSFGNQVTDLKPLANL 176

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
            +L+ L +S N++       L  L  LE ++  NN +    P+    L  L  L L+ N 
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQ 232

Query: 170 I 170
           +
Sbjct: 233 L 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 24/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L  L   +NQ++      L  L  L  L ++ N L    P+     L    +L L  
Sbjct: 264 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLKNL---TYLTLYF 318

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N  +   P     +  L+ L   +N+++  +         ++  L+  +N          
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD-VSS--LANLTNINWLSAGHNQISDLTPLAN 373

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              +  L L+D         +  N+     +      L    P         T  D++ N
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWN 431

Query: 169 TI 170
             
Sbjct: 432 LP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 27/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L  L   +NQ+T      L  L  L  L + +N +     +   T L     L+   
Sbjct: 111 LTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSL---QQLSFGN 165

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
                +      ++  L+ LDIS N+++            +LE L  +NN          
Sbjct: 166 QV---TDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGI 219

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L  L L+ N+L       L +L  L D+ + NN +    P+    L  LT L L  N
Sbjct: 220 LTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275

Query: 169 TI 170
            I
Sbjct: 276 QI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 27/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +            +T  +S    +L  +  L  D   ++    VE    L     +N S 
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNL---TQINFSN 77

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N      P    ++  L  + +++NQ+    P        +L  L L NN          
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKN 132

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L  L LS N +       L  L +L+ +    N +    P+    L  L  LD+S+N
Sbjct: 133 LTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSN 187

Query: 169 TI 170
            +
Sbjct: 188 KV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T++  L A  NQ++      L  L  + +L +++       PV     + +    N  +
Sbjct: 352 LTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTN-APVNYKANVSI---PNTVK 405

Query: 61  NAFNGSI-PSSFFDMKMLKSLDISHNQLT 88
           N     I P++  D       DI+ N  +
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPS 434

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 47/199 (23%)

Query: 1   MTSLKVLDASSNQLT---GNISPNLCELVL--------------LRELYIDNNDLRGHIP 43
           +     L  +   L+    N+ P +  L +              L  L   +N L   +P
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLP 116

Query: 44  VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
               +      HL++  N     +P       +L+ ++  +NQLT  +PE       SLE
Sbjct: 117 ELPAS----LKHLDVDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELPT----SLE 163

Query: 104 ILALSNN----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMP----NNNLQGP 149
           +L++ NN          SL+ L +S N L   +P         E+  +      N +   
Sbjct: 164 VLSVRNNQLTFLPELPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITH- 221

Query: 150 IPIEFCQLELLTILDLSNN 168
           IP     L+    + L +N
Sbjct: 222 IPENILSLDPTCTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 5e-15
 Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 36/184 (19%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            SL+ LDA  N+L+  +      L   + L +DNN L   +P      LL   ++N   N
Sbjct: 100 ASLEYLDACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPA--LLE--YINADNN 150

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------- 114
                +P        L+ L + +NQLT  +PE       SLE L +S N L+        
Sbjct: 151 QLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE----SLEALDVSTNLLESLPAVPVR 201

Query: 115 ----------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                         +NR+   IP  + +L     I++ +N L   I     Q        
Sbjct: 202 NHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 165 LSNN 168
               
Sbjct: 261 GPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 33/184 (17%)

Query: 7   LDASSNQLTG---NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
            ++  N ++G   +      +         + N+    +   +         L L+R   
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNL 71

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------SLQ 113
           + S+P +      +  L+I+ N L   +PE  A    SLE L   +N          SL+
Sbjct: 72  S-SLPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACDNRLSTLPELPASLK 123

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
            L + +N+L   +P        LE I   NN L   +P     LE   +L + NN +   
Sbjct: 124 HLDVDNNQL-TMLPELPAL---LEYINADNNQLTM-LPELPTSLE---VLSVRNNQL-TF 174

Query: 174 LPSC 177
           LP  
Sbjct: 175 LPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 26/150 (17%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              L+ ++A +NQLT  +      L     L + NN L   +P    +  L    L++S 
Sbjct: 139 PALLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPES--LE--ALDVST 189

Query: 61  NAFNGSIPSSFFDMKMLKS----LDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
           N    S+P+        +          N++T  IPE          IL+L       + 
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPE---------NILSLDP--TCTII 236

Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
           L DN L  RI   L    A  D   P    
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 11/168 (6%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            TSLK LD S N +   +S N   L  L  L   +++L+      +   L   I+L++S 
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
                +    F  +  L+ L ++ N         + T   +L  L LS   L+ L     
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----- 485

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
                 P    +L +L+ + M +N L+      F +L  L  + L  N
Sbjct: 486 -----SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 6e-17
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 15/182 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            S K LD S N L    S +      L+ L +   +++  I       L     L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNR 121
                   +F  +  L+ L      L   +         +L+ L +++N +Q        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF------ 139

Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI----LDLSNNTIFGTLPSC 177
              ++P +  NL  LE + + +N +Q     +   L  + +    LDLS N +    P  
Sbjct: 140 ---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 178 FR 179
           F+
Sbjct: 197 FK 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 15/172 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLS 59
           + SLK L  +SN+     + +  +L  L  L +  N L       +         +L+LS
Sbjct: 324 LKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
            N    ++ S+F  ++ L+ LD  H+ L       +     +L  L +S+   +  +   
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--- 437

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTI 170
                        L +LE + M  N+ Q     + F +L  LT LDLS   +
Sbjct: 438 -------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 40/215 (18%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVL----------------LRELYIDNNDLRG-HIP 43
              L++++    Q       +L  L                  L  L +  N L      
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 44  VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
            +         +L+LS N    ++ S+F  ++ L+ LD  H+ L       +     +L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 104 ILALSNN--------------SLQGLYLSDNRLFGRIPRW-LGNLLALEDIMMPNNNLQG 148
            L +S+               SL+ L ++ N             L  L  + +    L+ 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 149 PIPIEFCQLELLTILDLSNN-------TIFGTLPS 176
             P  F  L  L +L++++N        IF  L S
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 23/192 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              L+VLD S  ++   I     + L  L  L +  N ++  + +   + L     L   
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG----- 114
                         +K LK L+++HN +         +   +LE L LS+N +Q      
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 115 -------------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELL 160
                        L LS N +   I       + L  + + NN     +       L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 161 TILDLSNNTIFG 172
            +  L       
Sbjct: 228 EVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 14/189 (7%)

Query: 1   MTSLKVLDASSNQLT-GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYL----LVFIH 55
           + +LK L+ + N +    +      L  L  L + +N ++  I       L    L+ + 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG- 114
           L+LS N  N  I    F    L  L + +N  +  + +    G   LE+  L     +  
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 115 --LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFG 172
             L   D      +         L       +     I   F  L  ++   L + TI  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLA----YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 173 TLPSCFRTS 181
                +   
Sbjct: 297 VKDFSYNFG 305

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 5e-12
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD S        +     L  L  L +  N  + +   +I T L     L+LS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
                  P++F  +  L+ L+++ NQL   +P+ +     SL+ + L  N   
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 16/131 (12%)

Query: 41  HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF 100
            IP  +        +L+LS N        SFF    L+ LD+S  ++             
Sbjct: 21  KIPDNLPFST---KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------ 65

Query: 101 SLEILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
           ++E  A  + + L  L L+ N +          L +L+ ++    NL          L+ 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 160 LTILDLSNNTI 170
           L  L++++N I
Sbjct: 126 LKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 28/184 (15%)

Query: 3   SLKVLDASSNQLTGNISPNL-CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           +++    +      +   +L   L  +    + +  +   +      +     HL L   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGW--QHLELVNC 314

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
            F          +K LK L  + N+      E       SLE L LS N           
Sbjct: 315 KFGQF---PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILD 164
                SL+ L LS N +   +      L  LE +   ++NL+       F  L  L  LD
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 165 LSNN 168
           +S+ 
Sbjct: 428 ISHT 431

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 3e-17
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 33/178 (18%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              L+ L  S NQL  ++     E   L +L+  NN L   +P+      L    L++S 
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG--LQ--ELSVSD 190

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    S+P+   +   L  L   +N+LT  +P   +     L+ L +S N          
Sbjct: 191 NQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLTSLPVLPS 241

Query: 111 SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
            L+ L +S NRL   +P     LL+L    +  N L   +P     L   T ++L  N
Sbjct: 242 ELKELMVSGNRL-TSLPMLPSGLLSLS---VYRNQLTR-LPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 29/188 (15%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           + L  L A +NQLT ++      L   +EL + +N L   +P            L    N
Sbjct: 161 SELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSE----LYKLWAYNN 211

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------S 111
               S+P+       LK L +S N+LT  +P   +     L+ L +S N           
Sbjct: 212 RLT-SLPAL---PSGLKELIVSGNRLT-SLPVLPS----ELKELMVSGNRLTSLPMLPSG 262

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171
           L  L +  N+L  R+P  L +L +   + +  N L         ++              
Sbjct: 263 LLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 172 GTLPSCFR 179
               S  R
Sbjct: 322 MAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 23  CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82
           C       L +  + L   +P  +  ++     L +  N    S+P+   +   L++L++
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAHI---TTLVIPDNNLT-SLPALPPE---LRTLEV 88

Query: 83  SHNQLTGEIPERMATGCFSLEILALSNN-------SLQGLYLSDNRLFGRIPRWLGNLLA 135
           S NQLT  +P     G   L I +            L  L++  N+L   +P     L  
Sbjct: 89  SGNQLT-SLPVLP-PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL-TSLPVLPPGLQE 145

Query: 136 LEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
           L    + +N L   +P    +   L  L   NN
Sbjct: 146 LS---VSDNQLAS-LPALPSE---LCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 40/185 (21%), Positives = 61/185 (32%), Gaps = 36/185 (19%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
               VL+   + LT  +   L     +  L I +N+L   +P            L +S N
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGN 91

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------S 111
               S+P     +  L         L              L  L +  N           
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTSLPVLPPG 142

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171
           LQ L +SDN+L   +P     L  L      NN L   +P+       L  L +S+N + 
Sbjct: 143 LQELSVSDNQL-ASLPALPSELCKLW---AYNNQLTS-LPMLPSG---LQELSVSDNQL- 193

Query: 172 GTLPS 176
            +LP+
Sbjct: 194 ASLPT 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 23/168 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            + LK L  S N+LT ++     EL   +EL +  N L   +P+         + L++ R
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSEL---KELMVSGNRLT-SLPMLPSG----LLSLSVYR 270

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N     +P S   +    ++++  N L+ E   +      S    +           S  
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
           R      R L             + L      E    +   +    +N
Sbjct: 329 RET----RALHLAA--------ADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 16/83 (19%)

Query: 99  CFSLEILALSNN-----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
                +L +  +            +  L + DN L   +P     L  LE   +  N L 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNL-TSLPALPPELRTLE---VSGNQLT 94

Query: 148 GPIPIEFCQLELLTILDLSNNTI 170
             +P+    L  L+I       +
Sbjct: 95  S-LPVLPPGLLELSIFSNPLTHL 116

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 4e-17
 Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 17/184 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L+VL    N +   I       L  L  L + +N L   IP     YL     L L 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISH-NQLTGEIPERMATGCFSLEILALSNN-------- 110
            N        +F  +  L  LD+    +L   I E    G F+L+ L L           
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNL 214

Query: 111 ----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                L+ L +S N      P     L +L+ + + N+ +       F  L  L  L+L+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 167 NNTI 170
           +N +
Sbjct: 275 HNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + SL  L+   N LT  I       L  LREL++ NN +   IP      +   + L+L 
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 60  RNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
                  I   +F  +  LK L++    +  ++P    T    LE L +S N        
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPG 236

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                 SL+ L++ ++++          L +L ++ + +NNL       F  L  L  L 
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 165 LSNN 168
           L +N
Sbjct: 297 LHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---- 110
           +LNL  N        +F  +  L+ L +  N +  +I      G  SL  L L +N    
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTV 137

Query: 111 ----------SLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNNLQGPIPIE-FCQLE 158
                      L+ L+L +N +   IP      + +L  + +        I    F  L 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 159 LLTILDLSNNTI 170
            L  L+L    I
Sbjct: 197 NLKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +LK L+     +  ++ PNL  LV L EL +  N     I       L     L +  
Sbjct: 195 LFNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           +  +    ++F  +  L  L+++HN L+  +P  + T    L  L L +N   
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 7e-17
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 29/180 (16%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            SL   + S N L+      L   + + EL   +N +   +   +   L     L L  N
Sbjct: 186 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVEL---TILKLQHN 236

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
               +  +   +   L  +D+S+N+L  +I          LE L +SNN           
Sbjct: 237 NL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L+ L LS N L   + R       LE++ + +N++     ++      L  L LS+N
Sbjct: 294 IPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              +++L+ +  Q+   I          +++LY+  N +R ++P  +   + +   L L 
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE 125

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           RN  +      F +   L +L +S+N L   I +       SL+ L LS+N         
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             SL    +S N L       L   +A+E++   +N++     +       LTIL L +N
Sbjct: 185 IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHN 236

Query: 169 TI 170
            +
Sbjct: 237 NL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 26/185 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + + K++   ++ +   +    L     +  L +++  +   I      Y      L + 
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            NA     P  F ++ +L  L +  N L+  +P  +      L  L++SNN         
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                SLQ L LS NRL   +   L  + +L    +  N L             +  LD 
Sbjct: 161 FQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 166 SNNTI 170
           S+N+I
Sbjct: 213 SHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 38/200 (19%)

Query: 1   MTSLKVLDASSNQLTGNISPNL-CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L VL    N L+ ++   +      L  L + NN+L   I  +         +L LS
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173

Query: 60  RNAFNGSIPSSFF-----------------DMKMLKSLDISHNQLTGEIPERMATGCFSL 102
            N     +  S                       ++ LD SHN +   +   +      L
Sbjct: 174 SNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV---NVEL 228

Query: 103 EILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI 150
            IL L +N             L  + LS N L   +      +  LE + + NN L   +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287

Query: 151 PIEFCQLELLTILDLSNNTI 170
            +    +  L +LDLS+N +
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
             L +L    N LT   +  L     L E+ +  N+L   I       +     L +S N
Sbjct: 226 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
               ++      +  LK LD+SHN L   +  R       LE L L +N           
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 111 SLQGLYLSDNRL 122
           +L+ L LS N  
Sbjct: 340 TLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 49  YLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108
           Y  VF  +++     +         +   K +   ++ +  ++P  +      +E+L L+
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 109 NN--------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE- 153
           +               ++Q LY+  N +    P    N+  L  +++  N+L   +P   
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI 136

Query: 154 FCQLELLTILDLSNNTI 170
           F     LT L +SNN +
Sbjct: 137 FHNTPKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +LKVLD S N L  ++  N  +   L  LY+D+N +   + +     L    +L LS 
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK---NLTLSH 348

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG 98
           N ++ +   + F  + +    +       +I  ++  G
Sbjct: 349 NDWDCNSLRALF--RNVARPAVDDADQHCKIDYQLEHG 384

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 16/182 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
           TSLK LD S N +   +S N   L  L  L   +++L+      +   L   I+L++S  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
               +    F  +  L+ L ++ N         + T   +L  L LS             
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 111 ---SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQL-ELLTILDLS 166
              SLQ L +S N  F         L +L+ +    N++      E       L  L+L+
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 167 NN 168
            N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 9e-16
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLS 59
           +S   L+  SN+L  ++      +L  L +L + +N L       +         +L+LS
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N    ++ S+F  ++ L+ LD  H+ L       +     +L  L +S+          
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 111 -----SLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                SL+ L ++ N             L  L  + +    L+   P  F  L  L +L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 165 LSNNTI 170
           +S+N  
Sbjct: 206 MSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +L  LD S           +   L  L  L +  N  + +   +I T L     L+LS
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           +       P++F  +  L+ L++SHN     +         SL++L  S N +       
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTS---K 239

Query: 120 NRLFGRIPRWLGNL 133
            +     P  L  L
Sbjct: 240 KQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           ++SL+VL  + N    N  P+   EL  L  L +    L   +       L     LN+S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF-SLEILALSNNSLQ 113
            N F       +  +  L+ LD S N +     ++       SL  L L+ N   
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 2e-16
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              +++L+ +  Q+   I          +++LY+  N +R ++P  +   + +   L L 
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLE 131

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           RN  +      F +   L +L +S+N L   I +       SL+ L LS+N         
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             SL    +S N L       L   +A+E++   +N++     +       LTIL L +N
Sbjct: 191 IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHN 242

Query: 169 TI 170
            +
Sbjct: 243 NL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 6e-15
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 28/179 (15%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            SL   + S N L+      L   + + EL   +N +   +   +   L     L L  N
Sbjct: 192 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVEL---TILKLQHN 242

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNR 121
               +  +   +   L  +D+S+N+L  +I          LE L +SNN L         
Sbjct: 243 NL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-------- 291

Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI----FGTLPS 176
               +  +   +  L+ + + +N+L   +     Q + L  L L +N+I      T  +
Sbjct: 292 ---ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 9e-15
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 28/183 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              L  L  S+N L   I  +       L+ L + +N L  H+ + +   L    H N+S
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSL---FHANVS 200

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N       S+      ++ LD SHN +   +   +      L IL L +N         
Sbjct: 201 YNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDTAWLL 251

Query: 111 ---SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
               L  + LS N L   +      +  LE + + NN L   + +    +  L +LDLS+
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310

Query: 168 NTI 170
           N +
Sbjct: 311 NHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 26/185 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + + K++   ++ +   +    L     +  L +++  +   I      Y      L + 
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            NA     P  F ++ +L  L +  N L+  +P  +      L  L++SNN         
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                SLQ L LS NRL   +   L  + +L    +  N L             +  LD 
Sbjct: 167 FQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 166 SNNTI 170
           S+N+I
Sbjct: 219 SHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 4e-11
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 21/147 (14%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
             L +L    N LT   +  L     L E+ +  N+L   I       +     L +S N
Sbjct: 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----------- 110
               ++      +  LK LD+SHN L   +  R       LE L L +N           
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIVTLKLSTHH 345

Query: 111 SLQGLYLSDNRL----FGRIPRWLGNL 133
           +L+ L LS N         + R +   
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVARP 372

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 49  YLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108
           Y  VF  +++     +         +   K +   ++ +  ++P  +      +E+L L+
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83

Query: 109 NN--------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE- 153
           +               ++Q LY+  N +    P    N+  L  +++  N+L   +P   
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI 142

Query: 154 FCQLELLTILDLSNNTI 170
           F     LT L +SNN +
Sbjct: 143 FHNTPKLTTLSMSNNNL 159

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L+ LD   N LT      +  +  + ++++  N L       +    L    ++LS 
Sbjct: 361 LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSE 410

Query: 61  NAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           N      I      +  L+ L ++ N+ +    ++  +   SLE L L  N LQ  + ++
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR 179
                        L  L+ + + +N L    P  F  L  L  L L++N +     +   
Sbjct: 471 LC-----WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

Query: 180 TS 181
            +
Sbjct: 526 AN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 19/195 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  LKVL+ + N++          L  L+ L +  N L   +       L    +++L +
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQK 347

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N        +F  ++ L++LD+  N LT            S+  + LS N          
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLVTLPKINL 401

Query: 111 SLQGLYLSDNRLFG-RIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLTILDLSNN 168
           +   ++LS+NRL    I  +L  +  L+ +++  N        +       L  L L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 169 TIFGTLPSCFRTSSF 183
            +     +      F
Sbjct: 462 MLQLAWETELCWDVF 476

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 12/181 (6%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + + + L  S N +    + +   L  L+ L + +      I  E    L     L+L  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGE-IPERMATGCFSLEILALSNNSLQGLYLSD 119
           +      P +F  +  L  L +    L+   + +       +L  L LS N ++ LYL  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL--LTILDLSNNTIFGTLPSC 177
           +          G L +L+ I   +N +      E   L+   L+   L+ N+++  +   
Sbjct: 143 S---------FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 178 F 178
           +
Sbjct: 194 W 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 9e-15
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 18/190 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L++L+  S      I       L  LR L + ++ +   +  +    L     L L 
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLY 105

Query: 60  RNAFNGSI--PSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYL 117
               + ++     F ++K L  LD+S NQ+             SL+ +  S+N +  +  
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 118 SDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE------LLTILDLSNNTIF 171
            +                L    +  N+L   + +++ +        +L ILD+S N   
Sbjct: 166 HELEPL--------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 172 GTLPSCFRTS 181
             +   F  +
Sbjct: 218 VDITGNFSNA 227

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 23/203 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPN--LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
           +  L  L      L+  +  +     L  L  L +  N +R          L     ++ 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 59  SRNAFNGSIPSSF--FDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
           S N               K L    ++ N L   +        +   +    N  L+ L 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS-----VDWGKCMNPFRNMVLEILD 210

Query: 117 LSDNRLFGRIPRWLGNLLA------------LEDIMMPNNNLQGPIPIEFCQLEL--LTI 162
           +S N     I     N ++            +       +N++ P    F  L    +  
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 163 LDLSNNTIFGTLPSCFRTSSFVK 185
           LDLS+  +F      F T   +K
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLK 293

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 26/205 (12%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
             +L     ++N L   +S +  + +   R + ++  D+ G+                  
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN--------GWTVDITGNF 224

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF--SLEILALSNN------- 110
            NA + S   S      +       + +  +  +    G    S+  L LS+        
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 111 -------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                   L+ L L+ N++          L  L+ + +  N L       F  L  +  +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 164 DLSNNTIFGTLPSCFRTSSFVKKQD 188
           DL  N I       F+    ++  D
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLD 368

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLVFIH 55
             SL+ L    N L       LC  V      L+ LY+++N L   +P  + ++L     
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRG 508

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           L+L+ N     +  +      L+ LDIS NQL                       SL  L
Sbjct: 509 LSLNSNRLT-VLSHNDL-PANLEILDISRNQLL--------------APNPDVFVSLSVL 552

Query: 116 YLSDNRLFGRIP-RWLGNLLALEDIMMPNN 144
            ++ N+           N L   ++ +   
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGP 582

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 19/185 (10%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            + + +    N+++ ++          L  L++ +N L   I     T L +   L+LS 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 61  NAFNGSIPSS-FFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           NA   S+  + F  +  L +L +    L  E+   +  G  +L+ L L +N         
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                +L  L+L  NR+     R    L +L+ +++  N +    P  F  L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 166 SNNTI 170
             N +
Sbjct: 209 FANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 42/184 (22%), Positives = 62/184 (33%), Gaps = 19/184 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
             +L +L   SN L   I       L LL +L + +N     +       L     L+L 
Sbjct: 55  CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 60  RNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
           R      +    F  +  L+ L +  N L   +P+       +L  L L  N        
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                 SL  L L  NR+    P    +L  L  + +  NNL          L  L  L 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 165 LSNN 168
           L++N
Sbjct: 232 LNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +L+ L    N L   +  +    L  L  L++  N +   +P      L     L L 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           +N      P +F D+  L +L +  N L+  +P        +L+ L L++N   
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L++L  S N +   I       L  L  L + +N L   IP     YL     L L 
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISH-NQLTGEIPERMATGCFSLEILALSNN-------- 110
            N        +F  +  L+ LD+    +L+  I E    G  +L  L L+          
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNL 203

Query: 111 ----SLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                L  L LS N L   I       L+ L+ + M  + +Q      F  L+ L  ++L
Sbjct: 204 TPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 166 SNNTI 170
           ++N +
Sbjct: 263 AHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +L  L+   N+LT  I       L  L+EL++ NN +   IP      +     L+L 
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG 168

Query: 60  RNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
                  I   +F  +  L+ L+++   L  EIP    T    L+ L LS N        
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPG 225

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                  LQ L++  +++         NL +L +I + +NNL       F  L  L  + 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 165 LSNN 168
           L +N
Sbjct: 286 LHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 5e-14
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           T+ ++L+   NQ+   I  N    L  L  L +  N +R  I +     L     L L  
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 61  NAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N    +IP+ +F  +  LK L + +N +   IP        SL  L L            
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                 +L+ L L+   L   IP  L  L+ L+++ +  N+L    P  F  L  L  L 
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 165 LSNNTI 170
           +  + I
Sbjct: 238 MIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 20  PNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLK 78
           P++C       ++     +LR  +P  I T   +   LNL  N       +SF  ++ L+
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGISTNTRL---LNLHENQIQIIKVNSFKHLRHLE 91

Query: 79  SLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLFG 124
            L +S N +   I      G  +L  L L +N               L+ L+L +N +  
Sbjct: 92  ILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-E 149

Query: 125 RIP-RWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTI 170
            IP      + +L  + +        I    F  L  L  L+L+   +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +++L+ L+ +   L   I PNL  L+ L EL +  N L   I       L+    L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           +       ++F +++ L  ++++HN LT  +P  + T    LE + L +N   
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 9e-16
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 18/198 (9%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            ++K LD S N++T  I    L     L+ L + ++ +   I  +    L    HL+LS 
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N  +    S F  +  LK L++  N         +     +L+ L + N           
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                SL  L +    L     + L ++  +  + +  +     + I    L  +  L+L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 166 SNNTIFGTLPSCFRTSSF 183
            +  +     S       
Sbjct: 204 RDTNLARFQFSPLPVDEV 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 27/195 (13%)

Query: 3   SLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  V D  S   T     ++        ++ L +  N +  +I             L L 
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAA------MKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            +  N     +F+ +  L+ LD+S N L+  +         SL+ L L  N         
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 111 ------SLQGLYLSDNRLFGRIPRW-LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                 +LQ L + +   F  I R     L +L ++ +   +L+         +  +  L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 164 DLSNNTIFGTLPSCF 178
            L  +     L    
Sbjct: 178 TLHLSESAFLLEIFA 192

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPN---LCELVLLRELYIDNNDLRGHIPVEIGTYLLVF---- 53
           + SL+ LD S N +      N         L+ L +  N LR      +     +     
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----SMQKTGEILLTLK 387

Query: 54  --IHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN- 110
               L++SRN F+  +P S    + ++ L++S   +   +   +     +LE+L +SNN 
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ---TLEVLDVSNNN 442

Query: 111 ---------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161
                     LQ LY+S N+L   +P        L  + +  N L+      F +L  L 
Sbjct: 443 LDSFSLFLPRLQELYISRNKL-KTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 162 ILDLSNN 168
            + L  N
Sbjct: 501 KIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 50  LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN 109
            +    L++ +      + + +  ++ +K + + ++++   +P   +    SLE L LS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 110 NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ--GPIPIEFCQLELLTILDLSN 167
           N +   YL ++   G          +L+ +++  N+L+           L+ LT LD+S 
Sbjct: 344 NLMVEEYLKNSACKG-------AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 168 NTI 170
           NT 
Sbjct: 397 NTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 26/195 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             +++ L      L  ++S     L  ++ + ++N+ +   +P     +L     L+LS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 61  NAFNGSI---PSSFFDMKMLKSLDISHNQLTG-EIPERMATGCFSLEILALSNN------ 110
           N          +       L++L +S N L   +    +     +L  L +S N      
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 111 -------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                   ++ L LS   +   +         LE + + NNNL     +    L  L  L
Sbjct: 404 DSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLDVSNNNLDS-FSLF---LPRLQEL 456

Query: 164 DLSNNTIFGTLPSCF 178
            +S N +  TLP   
Sbjct: 457 YISRNKL-KTLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 2/171 (1%)

Query: 1   MTSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           ++SLK L+   N      ++     L  L+ L I N +    I       L     L + 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
             +       S   ++ +  L +  ++    + E  A    S+  L L + +L     S 
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
             +                +   + N    +     +L  +   D + N +
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 8/177 (4%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-------YLLVF 53
           +  +  L    ++    +      L  +R L + + +L       +           L F
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 54  IHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
               L+  +FN  +      +  L  ++     L G      +      E+  +   +++
Sbjct: 231 RGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            L++    LF  +      L  ++ I + N+ +          L+ L  LDLS N +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 24/186 (12%), Positives = 59/186 (31%), Gaps = 8/186 (4%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +TSL  L+  +  L    S +L  +  +  L +  ++    +       L    +L L  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRD 205

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE------RMATGCFSLEILALSNNSLQG 114
                   S     ++   +     + +    E      ++      L  +   + +L G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 115 LYLSDNRLFGRIPRWLG-NLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
           L   +      +        + +  + +P   L   +   +  LE +  + + N+ +F  
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 174 LPSCFR 179
             S  +
Sbjct: 326 PCSFSQ 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 18/186 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + SL+ LD S N L+ ++S +    L  L+ L +  N  +      +   L     L + 
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 60  RNAFNGSIPSSFF-DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
                  I    F  +  L  L+I    L      +       +  L L  +        
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                 S++ L L D  L       L        +              F +L  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 165 LSNNTI 170
           L  + +
Sbjct: 251 LELSEV 256

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              ++ L+ SS  +        C    L  L + NN+L          +L     L +SR
Sbjct: 409 PEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISR 460

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           N    ++P +     +L  + IS NQL   +P+ +     SL+ + L  N   
Sbjct: 461 NKLK-TLPDASL-FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L+ L  S N L   I PNL     L EL I +N +R  +P  + + L     + +  
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156

Query: 61  NAF-NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N   N       FD   L  L IS  +LT  IP+ +     +L  L L +N         
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE---TLNELHLDHNKIQAIELED 212

Query: 111 -----SLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                 L  L L  N++   I    L  L  L ++ + NN L   +P     L+LL ++ 
Sbjct: 213 LLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVY 270

Query: 165 LSNNTI 170
           L  N I
Sbjct: 271 LHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 6e-15
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 29/191 (15%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLS 59
           +SL  L    N++   +   +   L  +  + +  N L  +   E G    L   +L +S
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRIS 180

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
                  IP      + L  L + HN++   I          L  L L +N         
Sbjct: 181 EAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL------ 159
                +L+ L+L +N+L  R+P  L +L  L+ + +  NN+      +FC +        
Sbjct: 237 LSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 160 LTILDLSNNTI 170
              + L NN +
Sbjct: 296 YNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            +L  L    N++   I    L     L  L + +N +R  I     ++L     L+L  
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N  +  +P+   D+K+L+ + +  N +T ++        F      +      G+ L +N
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV----NDFCPVGFGVKRAYYNGISLFNN 304

Query: 121 RL-FGRI-PRWLGNLLALEDIMMPNN 144
            + +  + P     +     I   N 
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 32/186 (17%)

Query: 3   SLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
            L+V+  S   L      ISP+         L + NND+   +  +    L     L L 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDT------TLLDLQNNDIS-ELRKDDFKGLQHLYALVLV 86

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N  +     +F  ++ L+ L IS N L  EIP  + +   SL  L + +N         
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS---SLVELRIHDNRIRKVPKGV 142

Query: 111 -----SLQGLYLSDNRL-FGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                ++  + +  N L          + L L  + +    L G IP +    E L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 165 LSNNTI 170
           L +N I
Sbjct: 200 LDHNKI 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 42/152 (27%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
           LR +   +  L+  +P EI         L+L  N  +      F  ++ L +L + +N++
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDT---TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 88  TGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           + +I E+  +    L+ L +S N L  +                          P N   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEI--------------------------PPNLPS 123

Query: 148 GPIPIEFCQLELLTILDLSNNTIFGTLPSCFR 179
                       L  L + +N I       F 
Sbjct: 124 S-----------LVELRIHDNRIRKVPKGVFS 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 3e-15
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 29/195 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  L    N++  ++S  L +L  L+ L +++N +     +     L     L L  
Sbjct: 86  LKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQL---ESLYLGN 140

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    +  +    +  L +L +  NQ++ +I      G   L+ L LS N          
Sbjct: 141 N--KITDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLRALAG 195

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L  L L       +      NL+    +   + +L  P  I           D    
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKP 248

Query: 169 TIFGTLPSCFRTSSF 183
            +   LP      SF
Sbjct: 249 NVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + ++  L  + N+LT +I P L  L  L  L++D N ++    ++    L     L+L  
Sbjct: 64  LPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKL---KSLSLEH 118

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N  +  I +    +  L+SL + +N++T +I     +    L+ L+L +N          
Sbjct: 119 NGIS-DI-NGLVHLPQLESLYLGNNKIT-DITVL--SRLTKLDTLSLEDNQISDIVPLAG 173

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              LQ LYLS N +     R L  L  L+ + + +             L +   +  ++ 
Sbjct: 174 LTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 169 TIF 171
           ++ 
Sbjct: 232 SLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 1e-13
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + S+  + A+++ +  ++   +  L  + +L+++ N L    P+     L     L L  
Sbjct: 42  LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNL---GWLFLDE 96

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N     + SS  D+K LKSL + HN ++ +I          LE L L NN          
Sbjct: 97  NKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDITVLSR 151

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L  L L DN++   +P  L  L  L+++ +  N++     +    L+ L +L+L + 
Sbjct: 152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQ 207

Query: 169 TI 170
             
Sbjct: 208 EC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
                  +     +T +      EL  + ++  +N+D++    ++    +     L L+ 
Sbjct: 20  FAETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNV---TKLFLNG 74

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N     I     ++K L  L +  N++  ++          L+ L+L +N          
Sbjct: 75  NKLT-DI-KPLTNLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHNGISDINGLVH 129

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L+ LYL +N++       L  L  L+ + + +N +   +P+    L  L  L LS N
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKN 185

Query: 169 TI 170
            I
Sbjct: 186 HI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 23/155 (14%), Positives = 58/155 (37%), Gaps = 24/155 (15%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
           + E    +  ++   P +        I  NL + +   ++  +  ++  +  +  +++ +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAET---IKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 55

Query: 88  TGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLA 135
              +         ++  L L+ N            +L  L+L +N++   +   L +L  
Sbjct: 56  K-SVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI-KDLSS-LKDLKK 110

Query: 136 LEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           L+ + + +N +     +    L  L  L L NN I
Sbjct: 111 LKSLSLEHNGISDINGLV--HLPQLESLYLGNNKI 143

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 20/184 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +L  L   +N+++  ISP     LV L  LY+  N L+  +P ++   L     L + 
Sbjct: 75  LKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL---QELRVH 129

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLT-GEIPERMATGCFSLEILALSNN-------- 110
            N       S F  +  +  +++  N L    I      G   L  + +++         
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189

Query: 111 ---SLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
              SL  L+L  N++  ++    L  L  L  + +  N++             L  L L+
Sbjct: 190 LPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 167 NNTI 170
           NN +
Sbjct: 249 NNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLS 59
            +L+ L    N++T  +  +    L  +  + +  N L+   I       +    ++ ++
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
                 +IP        L  L +  N++T ++      G  +L  L LS N         
Sbjct: 180 DTNIT-TIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 111 -----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG------PIPIEFCQLEL 159
                 L+ L+L++N+L  ++P  L +   ++ + + NNN+          P    +   
Sbjct: 236 LANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 160 LTILDLSNNTI 170
            + + L +N +
Sbjct: 295 YSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L+ L  S NQL   +   +     L+EL +  N++   +   +   L   I + L  
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 154

Query: 61  NAFNGSI--PSSFFDMKMLKSLDISHNQLTGEIPERMATGCF-SLEILALSNN------- 110
           N    S     +F  MK L  + I+   +T      +  G   SL  L L  N       
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKITKVDA 209

Query: 111 -------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                  +L  L LS N +       L N   L ++ + NN L   +P      + + ++
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268

Query: 164 DLSNNTI 170
            L NN I
Sbjct: 269 YLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 33/187 (17%)

Query: 3   SLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
            L+V+  S   L     ++ P+         L + NN +   I       L     L L 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT------ALLDLQNNKIT-EIKDGDFKNLKNLHTLILI 84

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            N  +   P +F  +  L+ L +S NQL  E+PE+M     +L+ L +  N         
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK---TLQELRVHENEITKVRKSV 140

Query: 111 -----SLQGLYLSDNRLFGRI--PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163
                 +  + L  N L            +  L  I + + N+   IP        LT L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 164 DLSNNTI 170
            L  N I
Sbjct: 198 HLDGNKI 204

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            SL  L    N++T  +    L  L  L +L +  N +   +             L+L+ 
Sbjct: 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNN 249

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N     +P    D K ++ + + +N ++  I        F          S  G+ L  N
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS----NDFCPPGYNTKKASYSGVSLFSN 303

Query: 121 RL-FGRIPR-WLGNLLALEDIMMPNN 144
            + +  I       +     + + N 
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 42/152 (27%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
           LR +   +  L   +P ++         L+L  N         F ++K L +L + +N++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 88  TGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           + +I          LE L LS N L+ L                          P    +
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKEL--------------------------PEKMPK 121

Query: 148 GPIPIEFCQLELLTILDLSNNTIFGTLPSCFR 179
                       L  L +  N I     S F 
Sbjct: 122 T-----------LQELRVHENEITKVRKSVFN 142

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 27/193 (13%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            SL+ LD S N L+ N+S +  + L  L  L +  N  +      + ++L     L +  
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
                 I    F  +  L+ L+I  + L      +      ++  L L            
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 111 -----SLQGLYLSDNRL----FGRIP----RWLGNLLALEDIMMPNNNLQGPIPIEFCQL 157
                S++ L L D  L    F  +       L       ++ + + +L   +     Q+
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 158 ELLTILDLSNNTI 170
             L  L+ S N +
Sbjct: 277 SGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 20/199 (10%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            ++K LD S+N++T  IS + L   V L+ L + +N +   I  +  + L    HL+LS 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N    ++ SS+F  +  L  L++  N         + +    L+IL + N          
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                  L+ L +  + L    P+ L ++  +  +++        + I       +  L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 165 LSNNTIFGTLPSCFRTSSF 183
           L +  +     S   T   
Sbjct: 229 LRDTDLDTFHFSELSTGET 247

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 2   TSLKVLDASSNQLTGNISPN--LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +SL  L+   N     +        L  L+ L + N D    I  +    L     L + 
Sbjct: 124 SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
            +      P S   ++ +  L +   Q    + E       S+E L L +          
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 111 -------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQL 157
                        + + + ++D  LF ++ + L  +  L ++    N L+      F +L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 158 ELLTILDLSNN 168
             L  + L  N
Sbjct: 301 TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 11/121 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNL-CELVLLRELYIDNNDLRGHIPVEIG-------TYLLV 52
           + ++  L     Q    +          +  L + + DL      E+             
Sbjct: 197 IQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 53  FIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
           F ++ ++  +    +      +  L  L+ S NQL   +P+ +     SL+ + L  N  
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

Query: 113 Q 113
            
Sbjct: 314 D 314

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 6/182 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +  L+ L          I  N    L  L  L +D N     +       L     L L+
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLT 111

Query: 60  RNAFNGS-IPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYL 117
           +   +G+ +  +FF  +  L+ L +  N +    P           +L L+ N ++ +  
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

Query: 118 SD-NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
            D     G+    L  L ++    M    L         +   +T LDLS N    ++  
Sbjct: 172 EDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 177 CF 178
            F
Sbjct: 231 RF 232

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 36/199 (18%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI------ 54
            TS+  LD S N    +++    + +   ++         ++    G             
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 55  --------HLNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEIL 105
                     +LS++    ++  S F     L+ L ++ N++  +I +    G   L  L
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 106 ALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILD 164
            LS N L  +   D+R+F      L     LE + +  N+++  +  + F  L  L  L 
Sbjct: 329 NLSQNFLGSI---DSRMF----ENLDK---LEVLDLSYNHIRA-LGDQSFLGLPNLKELA 377

Query: 165 LSNNTI-------FGTLPS 176
           L  N +       F  L S
Sbjct: 378 LDTNQLKSVPDGIFDRLTS 396

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 43/216 (19%)

Query: 1   MTSLKVLDASSNQLTGNISPN--LCELVLLRELYIDNNDLRGHIPVEI----------GT 48
           +TSL++L    N +   I P      +     L +  N ++  I  E             
Sbjct: 128 LTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL 185

Query: 49  YLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA-- 106
            L      +++          + F    + +LD+S N     + +R        +I +  
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 107 --------------------------LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIM 140
                                     L  + ++   LS +++F  +     +   LE + 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 141 MPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
           +  N +       F  L  L  L+LS N + G++ S
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 24/130 (18%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------- 110
            +P+       +  +D+S N +  E+ E   +    L+ L +                  
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 111 SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIE-FCQLELLTILDLSNN 168
           SL  L L  N+           L  LE + +   NL G  +    F  L  L +L L +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 169 TIFGTLPSCF 178
            I    P+ F
Sbjct: 140 NIKKIQPASF 149

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 5e-14
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVL--LRELYIDNNDL--RGHIPVEIGTYLLVFI-H 55
           ++ L+ L   + ++TG   P L E     L  L + N     R     E+  +L   +  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF---SLEILALSNNSL 112
           L++++                L +LD+S N   GE     A       +L++LAL N  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLTILDLSNNTIF 171
                      G         + L+ + + +N+L+       C     L  L+LS   + 
Sbjct: 214 -------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL- 265

Query: 172 GTLPSC 177
             +P  
Sbjct: 266 KQVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 8e-13
 Identities = 35/165 (21%), Positives = 47/165 (28%), Gaps = 19/165 (11%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH---LNL 58
             LKVL  +           +     L  L + +N   G   +      L F     L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 59  SRNAFN---GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN----- 110
                    G   +       L+ LD+SHN L              L  L LS       
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 111 ------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP 149
                  L  L LS NRL  R P     L  + ++ +  N     
Sbjct: 269 PKGLPAKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 1   MTSLKVLDASSNQLT---GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLN 57
             +L+VL   +  +    G  S      V L+ L + +N LR         +      LN
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 58  LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
           LS       +P        L  LD+S+N+L    P         +  L+L  N    
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPSP--DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 18/162 (11%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLV--FIHLNLSRNAFNGSIPSSFFDMKM--LKSLDIS 83
           L+ L +    +   I       L +     L L      G+ P    +     L  L++ 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 84  HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN 143
           +               +  E+       L+ L ++           +    AL  + + +
Sbjct: 130 NVSWATRDA-------WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 144 NNLQGPIPIE----FCQLELLTILDLSNN---TIFGTLPSCF 178
           N   G   +       +   L +L L N    T  G   +  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 7e-14
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 19/170 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           M SL  +  ++  +T +++  +     +++L I+N     + P+   + L     L +  
Sbjct: 43  MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNPISGLSNL---ERLRIMG 97

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
                    +   +  L  LDISH+     I           +I  L    +  + LS N
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---------KINTLPK--VNSIDLSYN 146

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
                I   L  L  L+ + +  + +     IE      L  L   + TI
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 73  DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDN 120
            M  L  + +++  +T       A    +++ L ++N             +L+ L +   
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAH---NIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
            +       L  L +L  + + ++     I  +   L  +  +DLS N 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 24/183 (13%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
               +L  S N L    S   L     L +L +D  +L   + V+    +L    L+LS 
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVL--GTLDLSH 86

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    S+P     +  L  LD+S N+LT  +P     G   L+ L L  N          
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 111 ----SLQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
                L+ L L++N L   +P  L   L  L+ +++  N+L   IP  F    LL    L
Sbjct: 145 TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 166 SNN 168
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L  LD S NQL  ++      L  L  L +  N L   +P+     L     L L  
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           N    ++P         L+ L +++N LT E+P  +  G  +L+ L L  NSL       
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY------ 185

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNN 144
                 IP+       L    +  N
Sbjct: 186 -----TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
            +N  +     ++P      K    L +S N L              L  L L    L  
Sbjct: 14  EVNCDKRNL-TALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK 69

Query: 115 LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           L +               L  L  + + +N LQ  +P+    L  LT+LD+S N +
Sbjct: 70  LQVDGT------------LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 45/195 (23%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVL-------------LRELYIDNNDLRGHIPVEIG 47
           + S      + ++   N  P   E                  EL ++N  L   +P    
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

Query: 48  TYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL 107
                   L  S N+    +P     +K L   + +   L+   P         LE L +
Sbjct: 92  H----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGV 138

Query: 108 SNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC 155
           SNN             L+ + + +N L  ++P    +L  +      NN L+  +P E  
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLEE-LP-ELQ 192

Query: 156 QLELLTILDLSNNTI 170
            L  LT +   NN++
Sbjct: 193 NLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 32/188 (17%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI------- 54
           T L+     S+ LT  +      +    E Y   ++   + P   G    + +       
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 55  -----HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN 109
                 L L+    + S+P        L+SL  S N LT E+PE       SL +   + 
Sbjct: 70  DRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELP-QSLKSLLVDNNNL 123

Query: 110 N-------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
                    L+ L +S+N+L  ++P  L N   L+ I + NN+L+  +P        L  
Sbjct: 124 KALSDLPPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPS---LEF 177

Query: 163 LDLSNNTI 170
           +   NN +
Sbjct: 178 IAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 31/178 (17%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            +L  L+ASSN++  ++      L    EL + NN L   +P            L  S N
Sbjct: 297 PNLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPR----LERLIASFN 347

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------SL 112
                +P    +   LK L + +N L  E P+       S+E L ++++         +L
Sbjct: 348 HLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPE----SVEDLRMNSHLAEVPELPQNL 398

Query: 113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           + L++  N L    P    ++  L    M +  +  P        + L      ++  
Sbjct: 399 KQLHVETNPL-REFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 32/180 (17%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             SL+ + A +NQL     P L  L  L  +Y DNN L+  +P    +       +    
Sbjct: 172 PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLS----LESIVAGN 224

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N           ++  L ++   +N L   +P+       SLE L + +N          
Sbjct: 225 NIL--EELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLPELPQ 277

Query: 111 SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           SL  L +S+N     +     NL  L      +N ++            L  L++SNN +
Sbjct: 278 SLTFLDVSENIF-SGLSELPPNLYYL---NASSNEIRSLCD----LPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 33/161 (20%)

Query: 18  ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKML 77
           I+P       L+E    +++L                            +P    ++K  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--------------------------EMPVEAENVKSK 36

Query: 78  KSLDISHNQLTGEIPERMATGCF--SLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLA 135
                + ++     P             +    +     L L++  L   +P    +   
Sbjct: 37  TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPELPPH--- 92

Query: 136 LEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
           LE ++   N+L   +P     L+ L + + +   +    P 
Sbjct: 93  LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              K LD  SN+L+ ++       L  LR LY+++N L+  +P  I   L     L ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N    ++P   FD +  L  L +  NQL   +P R+      L  L+L  N         
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 111 -----SLQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                SL+ L L +N+L  R+P      L  L+ + + NN L+      F  LE L +L 
Sbjct: 153 FDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 165 LSNN 168
           L  N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 20/136 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           + +L+ L  + N+L   +   + + LV L EL +D N L+  +P  +   L    +L+L 
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 60  RNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
            N    S+P   FD +  LK L + +NQL   +PE        L+ L L NN        
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 111 ------SLQGLYLSDN 120
                  L+ L L +N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 56  LNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---- 110
           L+L  N  + S+PS  F  +  L+ L ++ N+L   +P  +     +LE L +++N    
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 111 ----------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLEL 159
                     +L  L L  N+L    PR   +L  L  + +  N LQ  +P   F +L  
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTS 158

Query: 160 LTILDLSNNTI 170
           L  L L NN +
Sbjct: 159 LKELRLYNNQL 169

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 30/179 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            T L  LD S N++T     ++ +  LL  L  D N++   + +     L     L+ S 
Sbjct: 169 QTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLDLNQNIQL---TFLDCSS 221

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N     I  +   +  L   D S N LT E+     +    L  L               
Sbjct: 222 NKLT-EIDVT--PLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDLLEIDLTHN 274

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             L        R    +   + +   L  +      +     ++  Q   L  L L+N 
Sbjct: 275 TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  LD  ++ +T      + +L  L +L   +N++   + +   T L    +L    
Sbjct: 41  LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLDLSQNTNL---TYLACDS 94

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    ++      +  L  L+   N+LT ++     +    L  L  + N          
Sbjct: 95  NKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDV---SQNPLLTYLNCARNTLTEIDVSHN 147

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
             L  L    N+   ++   +     L  +    N +     ++  Q +LL  L+   N 
Sbjct: 148 TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNN 202

Query: 170 I 170
           I
Sbjct: 203 I 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L  L+  +N+LT     ++ +  LL  L    N L   I V   T L     L+   
Sbjct: 105 LTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVSHNTQLT---ELDCHL 157

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N               L +LD S N++T E+     +    L  L    N          
Sbjct: 158 N--KKITKLDVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLDLNQN 211

Query: 111 -SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
             L  L  S N+L   I   +  L  L       N L     ++   L  LT L      
Sbjct: 212 IQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD 265

Query: 170 I 170
           +
Sbjct: 266 L 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 28/170 (16%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T L   D S N LT     ++  L  L  L+    DL   I +   T L+         
Sbjct: 232 LTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLI-----YFQA 282

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
                           L  LD     +T             L++       L  LYL++ 
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGIT------------ELDLSQNPK--LVYLYLNNT 328

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            L   +   + +   L+ +   N ++Q        ++  L     +    
Sbjct: 329 EL-TELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 26/178 (14%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
                A++ ++    + +  +L  L  L   N+ +     +E  T L     L  + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGL---TKLICTSNNI 76

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-----------SL 112
             ++         L  L    N+LT  +     T    L  L    N            L
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
             L  + N L   I   + +   L ++    N     +         LT LD S N I
Sbjct: 130 TYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 13/117 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            T L +LD  +  +T     +L +   L  LY++N +L   + V   T L     L+   
Sbjct: 296 NTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVSHNTKL---KSLSCVN 348

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLT----GEIPERMATGCFSLEILALSNNSLQ 113
                   S    +  L +   +  Q        +     T   S ++L    N + 
Sbjct: 349 AHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  +  L A    +T  I   +  L  L  L + +N +    P++  T +     L LS 
Sbjct: 40  LDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKI---TELELSG 94

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N       S+   ++ +K+LD++  Q+T   P     G  +L++L L  N          
Sbjct: 95  N--PLKNVSAIAGLQSIKTLDLTSTQITDVTPL---AGLSNLQVLYLDLNQITNISPLAG 149

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +LQ L + + ++    P  L NL  L  +   +N +    P+    L  L  + L NN
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNN 205

Query: 169 TI 170
            I
Sbjct: 206 QI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 24/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T +  L+ S N L  N+S  +  L  ++ L + +  +    P+   + L     L L  
Sbjct: 84  LTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNL---QVLYLDL 138

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    +I S    +  L+ L I + Q++   P         L  L   +N          
Sbjct: 139 NQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPLAS 193

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +L  ++L +N++    P  L N   L  + + N  +          L +  ++   + 
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

Query: 169 TI 170
             
Sbjct: 252 AP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +   + A  + +T   +    +L  +  L      +     +E   YL   I L L  
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKD 72

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    +  +   ++  +  L++S N L   +      G  S++ L L++           
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             +LQ LYL  N++    P  L  L  L+ + + N  +    P+    L  LT L   +N
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDN 183

Query: 169 TI 170
            I
Sbjct: 184 KI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + S+K LD +S Q+T +++P L  L  L+ LY+D N +    P+     L    +L++  
Sbjct: 106 LQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISPLA---GLTNLQYLSIGN 160

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
              +  + +   ++  L +L    N+++ +I         +L  + L NN          
Sbjct: 161 AQVS-DL-TPLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSPLAN 215

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI 152
             +L  + L++  +  +   +  NL+    +  P+     P  I
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L+ L   + Q++ +++P L  L  L  L  D+N +    P+     L   I ++L  
Sbjct: 150 LTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKN 204

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N    S  S   +   L  + +++  +T +             +   S   +    +SDN
Sbjct: 205 NQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDN 262

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 16/182 (8%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            +++ + + + +           ++     L   NN L      E   +L     L L  
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQM 357

Query: 61  NAFN--GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------- 110
           N       I      MK L+ LDIS N ++ +  +   +   SL  L +S+N        
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 111 ----SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166
                ++ L L  N++   IP+ +  L AL+++ + +N L+      F +L  L  + L 
Sbjct: 418 CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 167 NN 168
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           M SL+ LD S N ++ +     C     L  L + +N L            +    L+L 
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-TDTIFRCLPPRIK--VLDLH 429

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
            N    SIP     ++ L+ L+++ NQL   +P+ +     SL+ + L  N   
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL--LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           T++     S+ +L G +     +     L+ L I           +   Y + F ++N+ 
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI-FSNMNIK 305

Query: 60  RNAFNG--SIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
               +G   +       +     LD S+N LT +           LE L L  N L+ L 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKEL- 363

Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELLTILDLSNNTIFGTLP 175
                   +I      + +L+ + +  N++        C   + L  L++S+N +  T+ 
Sbjct: 364 -------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 176 SCF 178
            C 
Sbjct: 417 RCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L +    S+      S        +       +  R  + +   + +  F+HL+ S 
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSN 333

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N    ++  +   +  L++L +  NQL  E+ +       +         SLQ L +S N
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKI--AEMTT------QMKSLQQLDISQN 384

Query: 121 RL-FGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            + +           +L  + M +N L   I    C    + +LDL +N I
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 40/168 (23%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
               +L+ S N ++   + ++  L  LR L I +N ++                      
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ---------------------- 58

Query: 62  AFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
                +  S F   + L+ LD+SHN+L  +I         +L+ L LS N+     L   
Sbjct: 59  ----YLDISVFKFNQELEYLDLSHNKLV-KISCHPTV---NLKHLDLSFNAFD--ALPIC 108

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
           + F       GN+  L+ + +   +L+    +    L +  +L +   
Sbjct: 109 KEF-------GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 17/181 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           ++ L++L  S N++             L  L + +N L   I       L    HL+LS 
Sbjct: 44  LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVNL---KHLDLSF 99

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
           NAF+       F  M  LK L +S   L             S+  +A  N S   L L +
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKS----------SVLPIAHLNISKVLLVLGE 149

Query: 120 NRLFGRIPRWLGNL--LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC 177
                  P  L +    +L  +   N      + +    +  L + ++            
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 178 F 178
            
Sbjct: 210 L 210

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 26/196 (13%), Positives = 61/196 (31%), Gaps = 11/196 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           M+ LK L  S+  L      ++  +  L    +       +   E    L  F   +L  
Sbjct: 114 MSQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
                       D+ +    ++  + +   + +   +   S+     +N  L  L L++ 
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 121 RLFGRIPRWLGNLL---ALEDIMMPNNNLQGPIPIE-----FCQLELLTILDLSNNTIFG 172
                    +  L+    +    + N  LQG +           L+ L+I  + ++    
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 173 TLPSCFRTSSFVKKQD 188
                +   S +  ++
Sbjct: 291 PQSYIYEIFSNMNIKN 306

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 17/178 (9%)

Query: 1   MTSLKVLDAS-SNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
           +  L  +    +N L   I+P   + L  L+ L I N  ++ H+P     + L  + L++
Sbjct: 78  LPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 59  SRNAFNGSIPSSFFD--MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
             N    +I  + F         L ++ N +  EI      G    E+    NN+L+ L 
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL 174
                                 + +    +          L+ L      N     TL
Sbjct: 195 ----------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 22/188 (11%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            +   L     +L   I          L ++ I  ND+   I  ++ + L     + + +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS-------- 111
                 I    F  +  L+ L IS+  +   +P+          +L + +N         
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 112 --------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTI 162
                      L+L+ N +   I     N   L+++ + +NN    +P + F       I
Sbjct: 148 SFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 163 LDLSNNTI 170
           LD+S   I
Sbjct: 207 LDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 55  HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
            L             +F     L+ ++IS N +   I   + +    L  + +       
Sbjct: 34  ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA---- 89

Query: 115 LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL 174
                N L    P    NL  L+ +++ N  ++    +         +LD+ +N    T+
Sbjct: 90  -----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 175 PS 176
             
Sbjct: 145 ER 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  L    N++  ++S  L +L  L+ L +++N +     +     L     L L  
Sbjct: 89  LKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQL---ESLYLGN 143

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N    +  +    +  L +L +  NQ++ +I      G   L+ L LS N          
Sbjct: 144 N--KITDITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLRALAG 198

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI 152
             +L  L L       +      NL+    +   + +L  P  I
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 26/182 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + S+  + A+++ +  ++   +  L  + +L+++ N L    P+     L     L L  
Sbjct: 45  LNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNL---GWLFLDE 99

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N     + SS  D+K LKSL + HN ++ +I          LE L L NN          
Sbjct: 100 NKVK-DL-SSLKDLKKLKSLSLEHNGIS-DINGL--VHLPQLESLYLGNNKITDITVLSR 154

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              L  L L DN++   +P  L  L  L+++ +  N++     +    L+ L +L+L + 
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQ 210

Query: 169 TI 170
             
Sbjct: 211 EC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 24/162 (14%)

Query: 21  NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80
           +        +  +    +   +       +     +  + +    S+      +  +  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSI---DQIIANNSDIK-SV-QGIQYLPNVTKL 73

Query: 81  DISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPR 128
            ++ N+LT +I         +L  L L  N             L+ L L  N +      
Sbjct: 74  FLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI--SDIN 128

Query: 129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            L +L  LE + + NN +     +   +L  L  L L +N I
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  L+ L   +N++T +I+  L  L  L  L +++N +   +P+   T L    +L LS+
Sbjct: 133 LPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKL---QNLYLSK 187

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N  + S   +   +K L  L++   +   +     +       +     + +    +SD+
Sbjct: 188 N--HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 28/191 (14%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            S K LD S N L  ++          L+ L +   +++  I       L     L L+ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------- 110
           N    S+    F  +  L+ L      L   +         +L+ L +++N         
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 111 ------SLQGLYLSDNRLFGRIP----RWLGNLLALE-DIMMPNNNLQGPIPIEFCQLEL 159
                 +L+ L LS N++   I     R L  +  L   + +  N +    P  F ++  
Sbjct: 144 YFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 160 LTILDLSNNTI 170
           L  L L  N +
Sbjct: 202 LKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYL----LVFIH 55
           + +LK L+ + N +     P     L  L  L + +N ++  I       L    L+ + 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
           L+LS N  N  I    F    LK L +  NQL   +P+ +     SL+ + L  N
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 34/169 (20%)

Query: 1   MTSLKVLDASSNQLTGNISPNL-CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           ++SL+ L A    L  ++       L  L+EL + +N ++                    
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK---------------- 140

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
                  +P  F ++  L+ LD+S N++   I          + +L LS      L LS 
Sbjct: 141 -------LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS------LDLSL 186

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
           N +   I       + L+++ +  N L+      F +L  L  + L  N
Sbjct: 187 NPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 25/170 (14%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +    +     +T ++     EL  ++    DN++++    ++  T L     L+LS 
Sbjct: 18  LANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNL---KELHLSH 72

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N    S  S   D+  L+ L ++ N+L                +  + +  L  L+L +N
Sbjct: 73  N--QISDLSPLKDLTKLEELSVNRNRLK--------------NLNGIPSACLSRLFLDNN 116

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            L  R    L +L  LE + + NN L+  + +    L  L +LDL  N I
Sbjct: 117 EL--RDTDSLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            T+LK L  S NQ++ ++SP L +L  L EL ++ N L+    +           L L  
Sbjct: 62  FTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDN 115

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------- 110
           N        S   +K L+ L I +N+L   I          LE+L L  N          
Sbjct: 116 N--ELRDTDSLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITNTGGLTR 170

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
              +  + L+  +      ++   L     +  P+     P  I            +   
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS--NGGSYVDGCVLWE 228

Query: 169 TI 170
             
Sbjct: 229 LP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 28/171 (16%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           ++ ++  +  ++ +  +++  +     L+EL++ +N +    P++  T L     L+++R
Sbjct: 40  LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKL---EELSVNR 94

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-SLQGLYLSD 119
           N    ++  +      L  L + +N+L               +  +L +  +L+ L + +
Sbjct: 95  NRLK-NL--NGIPSACLSRLFLDNNELR--------------DTDSLIHLKNLEILSIRN 137

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           N+L   +   LG L  LE + +  N +     +   +L+ +  +DL+    
Sbjct: 138 NKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKC 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 44/183 (24%)

Query: 2   TSLKVLDASSNQLTGNISPN--LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +   +LD S N L+  +        L  L  L + +N L   I                 
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FIS---------------- 80

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
                     +F  +  L+ LD+S N L   + E + +   +LE+L L NN +  +   D
Sbjct: 81  --------SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV---D 128

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE----FCQLELLTILDLSNNTIFGTLP 175
              F        ++  L+ + +  N +    P+E      +L  L +LDLS+N +     
Sbjct: 129 RNAFE-------DMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 176 SCF 178
           +  
Sbjct: 181 TDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 15/151 (9%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
           +T+L  L  S N L   IS      +  LR L + +N L   +   + + L     L L 
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 60  RNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
            N     +  + F+ M  L+ L +S NQ++   P  +      L         L  L LS
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLP-------KLMLLDLS 171

Query: 119 DNRLFGRIPRWLGNL--LALEDIMMPNNNLQ 147
            N+L       L  L       + + NN L+
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------S 111
           ++P S         LD+SHN L+    E   T   +L  L LS+N              +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 112 LQGLYLSDNRLFGRIPRW-LGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNT 169
           L+ L LS N L   +  +   +L ALE +++ NN++   +    F  +  L  L LS N 
Sbjct: 90  LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQ 147

Query: 170 I 170
           I
Sbjct: 148 I 148

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 22/162 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIG--TYLLVFIHLNL 58
            +S   L+ + N  T ++      L  L+ L +  N L+ +          +     L++
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410

Query: 59  SRNAF-NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------- 110
           S N+  + +   +    + +  L++S N LTG +   +      +++L L NN       
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP---KVKVLDLHNNRIMSIPK 467

Query: 111 ------SLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNN 145
                 +LQ L ++ N+L   +P      L +L+ I + +N 
Sbjct: 468 DVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + SL +    +     +          +    +  +D    I +        F  LN ++
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQ 362

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTG-EIPERMATGCFSLEILALSNNS-------- 111
           N F  S+      +K L++L +  N L        M     SLE L +S NS        
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 112 -------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164
                  +  L LS N L G + R L   + + D  + NN +   IP +   L+ L  L+
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD--LHNNRIMS-IPKDVTHLQALQELN 479

Query: 165 LSNN 168
           +++N
Sbjct: 480 VASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 24  ELVLLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79
               +  L I N  +   I  E  TY    L   +  ++    F  S  + +     +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 80  LDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRL--F 123
             +S +     I         S   L  + N               LQ L L  N L  F
Sbjct: 334 KMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 124 GRIPRWLGNLLALEDIMMPNNNLQ-GPIPIEFCQLELLTILDLSNNTI 170
            ++     N+ +LE + +  N+L            E + +L+LS+N +
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 40/189 (21%), Positives = 59/189 (31%), Gaps = 43/189 (22%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              K L  S N ++  +       L  LR L + +N +R                     
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR--------------------- 89

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
                S+    F   + L+ LD+SHN+L   I         SL  L LS N      L  
Sbjct: 90  -----SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMA---SLRHLDLSFNDFDV--LPV 138

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI-LDLSNNTIFGTLPSCF 178
            + F       GNL  L  + +     +    +    L L  I LDL +  I G      
Sbjct: 139 CKEF-------GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 179 RTSSFVKKQ 187
           +  +     
Sbjct: 192 QIPNTTVLH 200

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            S + L      L   I  +    L  +  +Y+  +     +       L    H+ +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMA-TGCFSLEILALSNNS------- 111
                 I       + +LK L I +  L    P+           IL +++N        
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 112 ---------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQL-ELL 160
                       L L +N     +  +  N   L+ + +  N     I  + F  +    
Sbjct: 149 NAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 161 TILDLSNNTI 170
           ++LD+S  ++
Sbjct: 208 SLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 2   TSLKVLDASSNQLTG--NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
              +    +   +    ++ P+       + L +    LR  IP    + L     + +S
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPST------QTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 60  RNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
            +     + S SF+++  +  ++I + +    I          L+ L + N  L+     
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK--MFP 121

Query: 119 DNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQL-ELLTILDLSNNTI 170
           D            +      + + +N     IP+  F  L      L L NN  
Sbjct: 122 DLTKV-------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 1   MTSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF-IHLNL 58
           +  LK L   +  L        +    +   L I +N     IPV     L    + L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS-LEILALSNNSLQGL 115
             N F  S+    F+   L ++ ++ N+    I +    G +S   +L +S  S+  L
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 18/117 (15%)

Query: 77  LKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQGLYLSDNR 121
            ++L +    L   IP    +   ++  + +S +                +  + + + R
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 122 LFGRIPR-WLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILDLSNNTIFGTLPS 176
               I    L  L  L+ + + N  L+  P   +    ++  IL++++N    ++P 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 19/129 (14%)

Query: 56  LNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---- 110
           + L +N     IP   F   K L+ +D+S+NQ++ E+      G  SL  L L  N    
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 111 ----------SLQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIEFCQLEL 159
                     SLQ L L+ N++   +      +L  L  + + +N LQ      F  L  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 160 LTILDLSNN 168
           +  + L+ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 2   TSLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             L+ +D S+NQ++  ++P+  + L  L  L +  N +   +P  +   L     L L+ 
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
           N  N  +    F  +  L  L +  N+L   I +   +   +++ + L+ N
Sbjct: 114 NKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
              + LD  S  L          L  L  L +D N L+  +   +   L     L L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 62  AFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
               S+P   FD +  L  L +  NQL   +P  +      L+ L L+ N LQ +     
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI---PA 148

Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
             F +       L  L+ + +  N LQ      F +L  L  + L  N
Sbjct: 149 GAFDK-------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ-- 113
           L+L          ++F  +  L  L++ +NQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 114 ------------GLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIE-FCQLEL 159
                        LYL  N+L   +P  +   L  L+++ +  N LQ  IP   F +L  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTN 156

Query: 160 LTILDLSNNTI 170
           L  L LS N +
Sbjct: 157 LQTLSLSTNQL 167

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 8e-08
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 22/134 (16%)

Query: 4   LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
              LD   ++     S    E   +R L++ + DL     +     LL+  HL+LS N  
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRL 475

Query: 64  NGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------- 110
             ++P +   ++ L+ L  S N L   +          L+ L L NN             
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 111 --SLQGLYLSDNRL 122
              L  L L  N L
Sbjct: 532 CPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 9e-08
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH-LNLS 59
           M +L  L      L    S  L  +  +R  Y+D+   +  +   +       +  L+L+
Sbjct: 392 MRALDPLLYEKETLQ-YFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSD 119
                 ++      + ++  LD+SHN+L   +P  +A     LE+L  S+N+L+ +   D
Sbjct: 450 HKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALENV---D 502

Query: 120 NRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILDLSNN 168
                     + NL  L+++++ NN LQ             L +L+L  N
Sbjct: 503 G---------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
              ++VL  +   LT  +  +L +L+L+  L + +N LR  +P  +   L     L  S 
Sbjct: 440 YADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASD 495

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA-TGCFSLEILALSNNSLQ 113
           NA   ++     ++  L+ L + +N+L  +         C  L +L L  NSL 
Sbjct: 496 NALE-NVDG-VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 21  NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80
            L  L+  +E     + L+   P+            +  R+ F         +   ++ L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYL-------DDLRSKFLLENSVLKMEYADVRVL 446

Query: 81  DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIM 140
            ++H  LT  +          LE L      +  L LS NRL   +P  L  L  LE + 
Sbjct: 447 HLAHKDLT-VLC--------HLEQLL----LVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 141 MPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
             +N L+  +      L  L  L L NN +
Sbjct: 493 ASDNALEN-VD-GVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLS 59
           +  +  LD S N+L   + P L  L  L  L   +N L  ++   +     L    L L 
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE--LLLC 516

Query: 60  RNAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPER 94
            N     +          L  L++  N L  E   +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 10/172 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLC--ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNL 58
               +     S          L   +  +L+       +L+  +  E    LL  I L  
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ-ELEPENKWCLLTIILLMR 393

Query: 59  SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
           + +        +      LK++D         + +  +       +L +    ++ L+L+
Sbjct: 394 ALD-PLLYEKETLQYFSTLKAVDPMRA---AYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 119 DNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
              L   +   L  LL +  + + +N L+  +P     L  L +L  S+N +
Sbjct: 450 HKDL-TVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 30/199 (15%)

Query: 1   MTSLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF--- 53
             S+K +  S N +       +S N+     L      +    G +  EI   L +    
Sbjct: 31  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQA 89

Query: 54  -------IHLNLSRNAFNG----SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSL 102
                    + LS NAF       +         L+ L + +N L  +   ++A     L
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 103 EILALS--NNSLQGLYLSDNRLFGRIPRWLGNLLA----LEDIMMPNNNL-----QGPIP 151
            +   +     L+ +    NRL     +           L  + M  N +     +  + 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 152 IEFCQLELLTILDLSNNTI 170
                 + L +LDL +NT 
Sbjct: 210 EGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 38/213 (17%), Positives = 60/213 (28%), Gaps = 64/213 (30%)

Query: 2   TSLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFI--- 54
             L  +  S N         +   L +   L  LY+ NN L      +I   L       
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 55  ---------HLNLSRNAFNG----SIPSSFFDMKMLKSLDISHNQLTGE-IPERMATG-- 98
                     +   RN            +F   ++L ++ +  N +  E I   +  G  
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 99  -CFSLEILALSNN------------------SLQGLYLSDNRLFGRIPRWLGN--LLALE 137
            C  L++L L +N                  +L+ L L+D          L      A+ 
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--------LSARGAAAVV 265

Query: 138 DIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
           D      N+             L  L L  N I
Sbjct: 266 DAFSKLENIG------------LQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 44/185 (23%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL----LRELYIDNNDLRGH-IPVEIGTYLLVFIH- 55
             L+ +    N+L         +       L  + +  N +R   I   +   L      
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 56  --LNLSRNAFNG----SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSL-EILA-L 107
             L+L  N F      ++  +      L+ L ++   L+         G  ++ +  + L
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-------GAAAVVDAFSKL 271

Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGN--LLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
            N  LQ L L  N +            +  L+ ++                   L  L+L
Sbjct: 272 ENIGLQTLRLQYNEI--------ELDAVRTLKTVIDEKM-------------PDLLFLEL 310

Query: 166 SNNTI 170
           + N  
Sbjct: 311 NGNRF 315

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 27/127 (21%)

Query: 14  LTGNI---SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS- 69
           LT  +   +      V  REL +    +   +   +G  L  F  ++ S N     I   
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDN----EIRKL 57

Query: 70  -SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQ 113
             F  ++ LK+L +++N++   I E +      L  L L+NN               SL 
Sbjct: 58  DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 114 GLYLSDN 120
            L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 69  SSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR 128
           + + +    + LD+   ++   I E +       + +  S+N ++ L   D         
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DG-------- 59

Query: 129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
               L  L+ +++ NN +          L  LT L L+NN++
Sbjct: 60  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
             +L  L   + Q   ++    L  L  LR L I  + LR  +  +   +      LNLS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 60  RNAFNGSIPSSFFDMKMLKSLDISHNQLT 88
            NA   S+         L+ L +S N L 
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 38/125 (30%)

Query: 11  SNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS 70
           +     +   +L     L ELYI+N     H+                            
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLE------------------------LRD 51

Query: 71  FFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------------SLQGLYL 117
              +  L++L I  + L   +          L  L LS N             SLQ L L
Sbjct: 52  LRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

Query: 118 SDNRL 122
           S N L
Sbjct: 111 SGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------S 111
                    + L  L I + Q    +  R   G   L  L +  +               
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
           L  L LS N L   +       L+L+++++  N L 
Sbjct: 82  LSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 111 SLQGLYLSDNRLFGRIPRW-LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
           +L  LY+ + +    +    L  L  L ++ +  + L+   P  F     L+ L+LS N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 170 IFGTLPSCFRTSS 182
           +        +  S
Sbjct: 92  LESLSWKTVQGLS 104

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF----SLEILALSNN- 110
           L L  N      P  F  +  LK L +  NQL   +P     G F     L +L L  N 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----GVFDSLTQLTVLDLGTNQ 99

Query: 111 -------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQL 157
                         L+ L++  N+L   +PR +  L  L  + +  N L+      F +L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 158 ELLTILDLSNN 168
             LT   L  N
Sbjct: 159 SSLTHAYLFGN 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 37/195 (18%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLV---F 53
            +L+ L  S N L       LCE +L     L +L ++   L       + + L     F
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 54  IHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108
             L +S N  N +               L++L +    +T +        C  L  +  S
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVAS 225

Query: 109 NNSLQGLYLSDNRLFGRIPRWLGNLL-----ALEDIMMPNNNLQGPIPIEFCQ------- 156
             SL+ L L  N+L       L   L      L  + +    +      + C        
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA----KGCGDLCRVLR 281

Query: 157 -LELLTILDLSNNTI 170
             E L  L L+ N +
Sbjct: 282 AKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-LRELYIDNNDLRGHIPVEIGTYLLV---FIHLN 57
             ++ LD    +L+      L  L+   + + +D+  L      +I + L V      LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 58  LSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
           L  N                    ++ L + +  LTG        GC  L     +  +L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA-------GCGVLSSTLRTLPTL 115

Query: 113 QGLYLSDNRLFGRIPRWLGNLL-----ALEDIMMPNNNLQGPIPIEFCQL----ELLTIL 163
           Q L+LSDN L     + L   L      LE + +   +L          +         L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 164 DLSNNTI 170
            +SNN I
Sbjct: 176 TVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLVF--- 53
            SLK L  + N+L    +  LCE +L     L  L++ +            + L      
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 54  IHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108
           + L +S N    +              +L+ L ++   ++          C SL    L+
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS-------SCSSLAATLLA 396

Query: 109 NNSLQGLYLSDNRL 122
           N+SL+ L LS+N L
Sbjct: 397 NHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLV---F 53
            SL+ L   SN+L       LC  +L     LR L+I    +      ++   L      
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 54  IHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108
             L+L+ N           +        L+SL +     T          C     +   
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-------CCSHFSSVLAQ 339

Query: 109 NNSLQGLYLSDNRL 122
           N  L  L +S+NRL
Sbjct: 340 NRFLLELQISNNRL 353

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 34/165 (20%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            +++ L    N+L       L EL  L  L +  N L+  +P  +   L     L L  N
Sbjct: 63  PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119

Query: 62  AFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCF----SLEILALSNN------ 110
               S+P   FD +  L  L+++HNQL   +P+    G F    +L  L LS N      
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPK----GVFDKLTNLTELDLSYNQLQSLP 173

Query: 111 --------SLQGLYLSDNRLFGRIPRWLG---NLLALEDIMMPNN 144
                    L+ L L  N+L   +P   G    L +L+ I + +N
Sbjct: 174 EGVFDKLTQLKDLRLYQNQL-KSVPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 32/176 (18%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVF------I 54
           + S+  + A+++ +       +  L  +R L +  N L           +          
Sbjct: 40  LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKL---------HDISALKELTNLT 88

Query: 55  HLNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           +L L+ N    S+P+  FD +  LK L +  NQL   +P+ +     +L  L L++N LQ
Sbjct: 89  YLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNN 168
            L      +F +    L NL  L+   +  N LQ  +P   F +L  L  L L  N
Sbjct: 147 SL---PKGVFDK----LTNLTELD---LSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 2   TSLKVLDASSNQLTGNISPN-LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             L+ ++ S+N++T +I          + E+ + +N L   +  ++   L     L L  
Sbjct: 57  PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRS 114

Query: 61  NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL----QGL 115
           N     + +  F  +  ++ L +  NQ+T  +         SL  L L  N         
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172

Query: 116 YLSD 119
           +L +
Sbjct: 173 WLGE 176

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 23/121 (19%)

Query: 78  KSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLF 123
             L +++N+ T      +      L  +  SNN               +  + L+ NRL 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTI-------FGTLP 175
               +    L +L+ +M+ +N +   +  + F  L  + +L L +N I       F TL 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 176 S 176
           S
Sbjct: 154 S 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + + K L  S+N +   IS +L  +  LR L +  N ++    ++     L    L +S 
Sbjct: 47  LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE--ELWISY 102

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N    S+ S    +  L+ L +S+N++T    E        ++ LA + + L+ L L+ N
Sbjct: 103 NQIA-SL-SGIEKLVNLRVLYMSNNKIT-NWGE--------IDKLA-ALDKLEDLLLAGN 150

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 77  LKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFG 124
           +K L + +++      E +      LE L+  N              L+ L LSDNR+ G
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 125 RIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNN 168
            +         L  + +  N ++    IE   +LE L  LDL N 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 50/202 (24%)

Query: 27  LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK-MLKSLDISHN 85
           ++  +YI+  D R +   +      VF   N+SR          +  ++  L  L  + N
Sbjct: 107 MMTRMYIEQRD-RLYNDNQ------VFAKYNVSR-------LQPYLKLRQALLELRPAKN 152

Query: 86  -QLTGEIPERMATGC--FSLEILALSNNSLQGLYLSDNRLFGRIPRWL--GNLLALEDIM 140
             + G     +  G     + +    +  +Q     D ++F     WL   N  + E ++
Sbjct: 153 VLIDG-----VL-GSGKTWVALDVCLSYKVQCKM--DFKIF-----WLNLKNCNSPETVL 199

Query: 141 MPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLG 200
                L   I   +         D S+N          R  S ++ + RR +        
Sbjct: 200 EMLQKLLYQIDPNWTSRS-----DHSSNIK-------LRIHS-IQAELRRLLKSKPYENC 246

Query: 201 LDILPHLFRRRPRRLAVEGFDL 222
           L +L ++   +    A   F+L
Sbjct: 247 LLVLLNVQNAK----AWNAFNL 264

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 19/120 (15%)

Query: 29  RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQL 87
            EL +++N+L       +   L   + L L RN     I  + F+    ++ L +  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 88  TGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG---NLLALEDIMMPNN 144
             EI  +M  G   L+ L L +N +             +    G   +L +L  + + +N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS-----------CVMP--GSFEHLNSLTSLNLASN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
           +REL +DN          +    +    L+L       S+ S+   +  LK L++S N++
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83

Query: 88  TGEIPERMATGCFSLEILALSNNSLQGL 115
            G   + +A    +L  L LS N L+ +
Sbjct: 84  FG-GLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 77  LKSLDISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFG 124
           ++ L + + +      E +     +LE L+L N              L+ L LS+NR+FG
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 125 RIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNN 168
            +      L  L  + +  N L+    +E   +LE L  LDL N 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 24/149 (16%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
                LD  +N L    +    EL  L +LY+  N L+  +P  +   L    +LNLS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86

Query: 62  AFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCF----SLEILALSNNSLQGLY 116
               S+P+  FD +  LK L ++ NQL   +P+    G F     L+ L L  N L+   
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD----GVFDKLTQLKDLRLYQNQLK--- 137

Query: 117 LSDNRLFGRIPR-WLGNLLALEDIMMPNN 144
                    +P      L +L+ I + +N
Sbjct: 138 --------SVPDGVFDRLTSLQYIWLHDN 158

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 32/194 (16%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLVF--- 53
             +  LD S N L    +  L +        +  L +  N L      E+   L      
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 54  -IHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSL-EILA 106
              LNLS N  +                 +  LD+  N  +       +       +  +
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-------SKSSSEFKQAFS 134

Query: 107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLA-----LEDIMMPNNNLQGPIPIEFCQL---- 157
               S+  L L  N L  +    L  +LA     +  + +  NNL      E  +     
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 158 -ELLTILDLSNNTI 170
              +T LDLS N +
Sbjct: 195 PASVTSLDLSANLL 208

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 45/201 (22%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLVF--- 53
            ++ VLD   N  +   S    +        +  L +  NDL      E+   L      
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 54  -IHLNLSRNAFN-----------GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS 101
              LNL  N               SIP+S      + SLD+S N L  +           
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPAS------VTSLDLSANLLGLK-------SYAE 215

Query: 102 L-EILALSNNSLQGLYLSDNRLFGRIPRWLGNLLA----LEDIMMPNNNLQGPIPIE--- 153
           L  I +   N +  L L  N L G     L  L      L+ + +  + ++     +   
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 154 ----FCQLELLTILDLSNNTI 170
               F  ++ + ++D +   I
Sbjct: 276 LGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 31/193 (16%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLVF--- 53
            ++  L+ S N L+   S  L + +      +  L +  ND       E           
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 54  -IHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSL-EILA 106
              LNL  N            +       + SL++  N L  +        C  L + LA
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLA 192

Query: 107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLA-----LEDIMMPNNNLQGPIPIEFCQLEL-- 159
               S+  L LS N L  +    L  + +     +  + +  N L GP       L+   
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 160 --LTILDLSNNTI 170
             L  + L  + +
Sbjct: 253 KHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 19/130 (14%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDLRGHIPVEIGTYLLV---F 53
            S+  LD S+N L       L  +       +  L +  N L G     +          
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 54  IHLNLSRNAFNG-------SIPSSFFDMKMLKSLDISHNQLTGE----IPERMATGCFSL 102
             + L  +           ++ ++F +++ +  +D +  ++       I   +       
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 103 EILALSNNSL 112
           ++ +L N  L
Sbjct: 316 DVPSLLNQCL 325

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 30/110 (27%)

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS----LEILALSNN- 110
           L L  N F   +P    + K L  +D+S+N+++  +        FS    L  L LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYNR 89

Query: 111 -------------SLQGLYLSDNRLFGRIPRWLG---NLLALEDIMMPNN 144
                        SL+ L L  N +   +P   G   +L AL  + +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPE--GAFNDLSALSHLAIGAN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.1

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-31  Score=238.86  Aligned_cols=239  Identities=33%  Similarity=0.488  Sum_probs=168.2

Q ss_pred             CCcEEEccCCccccccCccccC--CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            3 SLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +|++|++++|.+++..+..+..  ++.|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            4555666666555555555544  556677777777776666666655 6777777777777776777777777777777


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ++++|.+.+.+|..+. .+++|+.+++++|.              ++.|++++|++++.+|.+++.+++|++|++++|.+
T Consensus       448 ~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             ECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            7777777766666554 37777777777773              34677777777777777777778888888888888


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCC-----------------------------------------------
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR-----------------------------------------------  179 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----------------------------------------------  179 (247)
                      ++.+|..++.+++|+.|++++|.+++.+|..+.                                               
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            777777777788888888888777765553221                                               


Q ss_pred             --------------------------CCCeEeccCCcccccCCCcc-------eeee--------ecchhcC--CCceEe
Q 044683          180 --------------------------TSSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--RPRRLA  216 (247)
Q Consensus       180 --------------------------~~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~L~~L~  216 (247)
                                                ....|++++|+++|.+|..+       .|++        +|..+..  +|+.||
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                                      11267777777777777655       3333        7777777  888888


Q ss_pred             ccCCeeeecCCccccCCCchhhhhccc
Q 044683          217 VEGFDLVLELPQIVCGLPTCFALGKLF  243 (247)
Q Consensus       217 l~~n~l~~~~~~~~~~l~~L~~l~~~~  243 (247)
                      +++|+++|.+|+.++++++|+.++--+
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcC
Confidence            888888888888888888887776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.9e-31  Score=214.96  Aligned_cols=227  Identities=26%  Similarity=0.299  Sum_probs=191.3

Q ss_pred             CCCcEEEccCCcccc--ccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCC
Q 044683            2 TSLKVLDASSNQLTG--NISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLK   78 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   78 (247)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            368899999999998  8899999999999999995 9998888888876 89999999999999888899999999999


Q ss_pred             EEeccCCcccccCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcC
Q 044683           79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN  143 (247)
Q Consensus        79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  143 (247)
                      +|++++|.+.+.+|..+. .+++|+.|++++|.               ++.+++++|.+++.+|..+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            999999999877777665 49999999998884               34788888888888888888887 99999999


Q ss_pred             CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccC
Q 044683          144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEG  219 (247)
Q Consensus       144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~  219 (247)
                      |.+++..+..+..+++|++|++++|.+++.++....  ....|++++|.+++.+|.         ++..  +|++|++++
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---------~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ---------GLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG---------GGGGCTTCCEEECCS
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh---------HHhcCcCCCEEECcC
Confidence            999888888888899999999999999866665222  334899999998877554         4455  899999999


Q ss_pred             CeeeecCCccccCCCchhhhhc
Q 044683          220 FDLVLELPQIVCGLPTCFALGK  241 (247)
Q Consensus       220 n~l~~~~~~~~~~l~~L~~l~~  241 (247)
                      |++++.+|.. +++++|+.+.-
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAY  298 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGT
T ss_pred             CcccccCCCC-ccccccChHHh
Confidence            9999998876 77777776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5e-30  Score=231.38  Aligned_cols=145  Identities=36%  Similarity=0.519  Sum_probs=74.6

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            4555566666555555555555555555555555555555544443 455555555555555555555555555555555


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++|.+++.+|..+. .+++|+.+++++|.              ++.|++++|.+++.+|..+..+++|++|++++|.+++
T Consensus       474 ~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          474 DFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             cCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            55555544444332 24555555555542              2244455555544444444444444444444444443


Q ss_pred             c
Q 044683          149 P  149 (247)
Q Consensus       149 ~  149 (247)
                      .
T Consensus       553 ~  553 (768)
T 3rgz_A          553 T  553 (768)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.9e-29  Score=203.20  Aligned_cols=214  Identities=25%  Similarity=0.331  Sum_probs=188.3

Q ss_pred             CCCCcEEEccC-CccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            1 MTSLKVLDASS-NQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         1 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++|++|++++ |.+.+..|..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..+..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            46899999995 9999999999999999999999999999889988876 899999999999999889999999999999


Q ss_pred             EeccCCcccccCchhHhhcCC-CccEEEccCCC-------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683           80 LDISHNQLTGEIPERMATGCF-SLEILALSNNS-------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        80 L~l~~n~~~~~~~~~~~~~~~-~L~~l~l~~n~-------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      |++++|.+++.+|..+.. ++ +|+.+++++|.             ++.+++++|.+++..+..+..+++|++|++++|.
T Consensus       154 L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            999999998888888765 66 99999999984             4589999999999999999999999999999999


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCe-
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFD-  221 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~-  221 (247)
                      +++.++. +..+++|++|++++|.+++..|..+..   ...|++++|+++|.+|...       .+. +|+.+++++|. 
T Consensus       233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~-------~l~-~L~~l~l~~N~~  303 (313)
T 1ogq_A          233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-------NLQ-RFDVSAYANNKC  303 (313)
T ss_dssp             ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST-------TGG-GSCGGGTCSSSE
T ss_pred             eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc-------ccc-ccChHHhcCCCC
Confidence            9966555 788999999999999999888887753   3399999999999877531       111 89999999996 


Q ss_pred             eeec
Q 044683          222 LVLE  225 (247)
Q Consensus       222 l~~~  225 (247)
                      +.|.
T Consensus       304 lc~~  307 (313)
T 1ogq_A          304 LCGS  307 (313)
T ss_dssp             EEST
T ss_pred             ccCC
Confidence            6653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=5.4e-29  Score=211.96  Aligned_cols=238  Identities=17%  Similarity=0.126  Sum_probs=121.7

Q ss_pred             CCCcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHh--hhcCCCCC
Q 044683            2 TSLKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS--FFDMKMLK   78 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~   78 (247)
                      ++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..  +..+++|+
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            45566666666554332 344555666666666666655333444433 555666666655555433333  55555555


Q ss_pred             EEeccCCcccccCchhHhhcCCCccEEEccCCC-----------------------------------------------
Q 044683           79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS-----------------------------------------------  111 (247)
Q Consensus        79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-----------------------------------------------  111 (247)
                      +|++++|.+.+..|..++..+++|+.+++++|.                                               
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            555555555533344333345555555555442                                               


Q ss_pred             -ccEEEccCCcCCCCCchhhhc---------------------------------------ccCcCeeeCcCCcccccCc
Q 044683          112 -LQGLYLSDNRLFGRIPRWLGN---------------------------------------LLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus       112 -l~~l~l~~n~~~~~~~~~~~~---------------------------------------~~~L~~L~l~~n~~~~~~~  151 (247)
                       ++.|++++|.+++..+..+..                                       .++|+++++++|.+++..+
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence             233444444443322222211                                       1344555555555554444


Q ss_pred             hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchhcC--C
Q 044683          152 IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--R  211 (247)
Q Consensus       152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~  211 (247)
                      ..+..+++|++|++++|.+++..+..+..   ...|++++|.+++..+..+       .|++        .|.++..  +
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            55555555555555555555444444432   1155555555544333222       1222        2444555  7


Q ss_pred             CceEeccCCeeeecCCccccCCCchhhhh
Q 044683          212 PRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       212 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      |++|++++|++++..+..+..+++|+.+.
T Consensus       373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          373 LKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccEEECCCCccccCCHhHhccCCcccEEE
Confidence            88888888888876666677777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.3e-28  Score=201.38  Aligned_cols=213  Identities=23%  Similarity=0.315  Sum_probs=182.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            56899999999999 77888999999999999999999 99988876 899999999999999 7899999999999999


Q ss_pred             ccCCcccccCchhHh--------hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchh
Q 044683           82 ISHNQLTGEIPERMA--------TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE  153 (247)
Q Consensus        82 l~~n~~~~~~~~~~~--------~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  153 (247)
                      +++|.+.+.+|..+.        ..+++|+.|++++          |.++ .+|..+..+++|++|++++|.++ .+|..
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~----------n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~  224 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW----------TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA  224 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE----------ECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcC----------CCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh
Confidence            999877768887543        2356666555555          4444 56888999999999999999999 46677


Q ss_pred             hhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCc
Q 044683          154 FCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQ  228 (247)
Q Consensus       154 l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~  228 (247)
                      +..+++|++|++++|.+.+.+|..+...   ..|++++|.+.+.+|..         +..  +|+.|++++|.+.+.+|+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~---------~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD---------IHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT---------GGGCTTCCEEECTTCTTCCCCCG
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh---------hhcCCCCCEEeCCCCCchhhccH
Confidence            9999999999999999998988877533   39999999998876654         444  899999999999999999


Q ss_pred             cccCCCchhhh
Q 044683          229 IVCGLPTCFAL  239 (247)
Q Consensus       229 ~~~~l~~L~~l  239 (247)
                      .++++++++.+
T Consensus       296 ~l~~L~~L~~l  306 (328)
T 4fcg_A          296 LIAQLPANCII  306 (328)
T ss_dssp             GGGGSCTTCEE
T ss_pred             HHhhccCceEE
Confidence            99999988766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.3e-28  Score=207.13  Aligned_cols=240  Identities=20%  Similarity=0.187  Sum_probs=197.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+.++...+..+++|++|++++|.++...|..++.+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            46899999999999888999999999999999999987677666666699999999999999988899999999999999


Q ss_pred             ccCCcccccCchh-HhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcc------------
Q 044683           82 ISHNQLTGEIPER-MATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNL------------  133 (247)
Q Consensus        82 l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~------------  133 (247)
                      +++|.+++.++.. .+..+++|+.|++++|.               ++.+++++|.+.+..+..+..+            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998544432 35568999999999984               4489999999988777665543            


Q ss_pred             ----------------------cCcCeeeCcCCcccccCchhhhC-----------------------------------
Q 044683          134 ----------------------LALEDIMMPNNNLQGPIPIEFCQ-----------------------------------  156 (247)
Q Consensus       134 ----------------------~~L~~L~l~~n~~~~~~~~~l~~-----------------------------------  156 (247)
                                            ++|++|++++|.+++..+..+..                                   
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                  67999999999887655544322                                   


Q ss_pred             ----CCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchhcC--CC
Q 044683          157 ----LELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--RP  212 (247)
Q Consensus       157 ----~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~L  212 (247)
                          .++|+.|++++|.+++..|..+..   ...|++++|.+++..+..+       .|++        .|.++..  +|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence                268999999999999888877753   3399999999998776554       3444        4566666  89


Q ss_pred             ceEeccCCeeeecCCccccCCCchhhhhc
Q 044683          213 RRLAVEGFDLVLELPQIVCGLPTCFALGK  241 (247)
Q Consensus       213 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~  241 (247)
                      ++|++++|++++..|..++++++|+.|+-
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcccccChhhccccccccEEEC
Confidence            99999999999888888998888887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=7.1e-28  Score=206.36  Aligned_cols=164  Identities=22%  Similarity=0.261  Sum_probs=99.9

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++...+..|..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4667777777777666667777777777777777776444444443 667777777777776444445666777777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++|.+. .++...+..+++|+.|++++|.              ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       112 s~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            777766 3333334456667777766663              3356666666665555556666666666666665554


Q ss_pred             cCchhhhCCCCCCEEEccCC
Q 044683          149 PIPIEFCQLELLTILDLSNN  168 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n  168 (247)
                      ..+..+..+++|+.|++++|
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECC
T ss_pred             eChhhcccCcccceeeCCCC
Confidence            44444444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.2e-26  Score=188.20  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=158.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..++   ++|++|++++|.++...+..+..+++|++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            45666666666666555566666666666666666665 5555443   4566666666666655566677778888888


Q ss_pred             ccCCcccc-cCchhHhhcCCCccEEEccCCC-----------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683           82 ISHNQLTG-EIPERMATGCFSLEILALSNNS-----------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP  149 (247)
Q Consensus        82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~-----------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  149 (247)
                      +++|.+.. .+....+..+++|+.+++++|.           ++.+++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            88877752 1233344557888888888773           45788888888877778888888899999999988877


Q ss_pred             CchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchh--cC-CCceEeccCCeee
Q 044683          150 IPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLF--RR-RPRRLAVEGFDLV  223 (247)
Q Consensus       150 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~--~~-~L~~L~l~~n~l~  223 (247)
                      .+..+..+++|++|++++|.++ .+|..+..   ...|++++|++++..+..+    -+...  .. .++.+++++|.+.
T Consensus       232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f----~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF----CPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS----SCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc----CCcccccccccccceEeecCccc
Confidence            6677888889999999999888 55555542   3388999998886554433    01000  11 6888999999876


Q ss_pred             e--cCCccccCCCchhhhh
Q 044683          224 L--ELPQIVCGLPTCFALG  240 (247)
Q Consensus       224 ~--~~~~~~~~l~~L~~l~  240 (247)
                      .  ..|..|..++.++.+.
T Consensus       307 ~~~i~~~~f~~~~~l~~l~  325 (330)
T 1xku_A          307 YWEIQPSTFRCVYVRAAVQ  325 (330)
T ss_dssp             GGGSCGGGGTTCCCGGGEE
T ss_pred             ccccCccccccccceeEEE
Confidence            3  4566777777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.6e-27  Score=200.81  Aligned_cols=238  Identities=22%  Similarity=0.178  Sum_probs=184.1

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|++|++++|.++...+..|..+++|++|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            467899999999999888889999999999999999998 7777766668899999999999987778888899999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ++++|.+. .++...+..+++|+.|++++|.              ++.|++++|.+.+..+..+..+++|++|++++|..
T Consensus       134 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             ECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            99999988 5554455668899999998884              44788999998877777888899999999999887


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcc-------eeee--------ecchh
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLF  208 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~  208 (247)
                      .+.++.......+|+.|++++|.+++..+..+.   ....|++++|.+++..+..+       .|++        .|.+|
T Consensus       213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            767776666677899999999999854434443   34488999998886655433       2222        34455


Q ss_pred             cC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          209 RR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       209 ~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      ..  +|++|++++|++++..+..|..+++|+.+.
T Consensus       293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI  326 (477)
T ss_dssp             TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred             cCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence            54  677777777777765555666666666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=1e-27  Score=212.14  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=109.0

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eee-cCCchhhhh-----cccccEEEccCCccccCChH--hh
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRG-HIPVEIGTY-----LLVFIHLNLSRNAFNGSIPS--SF   71 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~--~~   71 (247)
                      +++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++..     +++|++|++++|.++ .+|.  .+
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence            4679999999999999999999999999999999998 887 788888761     288999999999998 7787  88


Q ss_pred             hcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC-------------C-ccEEEccCCcCCCCCchhhhccc--C
Q 044683           72 FDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------------S-LQGLYLSDNRLFGRIPRWLGNLL--A  135 (247)
Q Consensus        72 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~-l~~l~l~~n~~~~~~~~~~~~~~--~  135 (247)
                      +.+++|++|++++|.++|.+| . +..+++|+.|++++|             . ++.|++++|.++ .+|..+...+  +
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            999999999999998887777 3 334566666666665             2 455555555555 4444443322  4


Q ss_pred             cCeeeCcCCcccccCchhhh
Q 044683          136 LEDIMMPNNNLQGPIPIEFC  155 (247)
Q Consensus       136 L~~L~l~~n~~~~~~~~~l~  155 (247)
                      |++|++++|.+++..|..+.
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSC
T ss_pred             cCEEECcCCcCCCcchhhhc
Confidence            44444444444444443333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7.7e-27  Score=205.42  Aligned_cols=234  Identities=21%  Similarity=0.146  Sum_probs=185.9

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|+.+++++|.+++..+..|..+++|++|++++|.++ .+|..+.. +++|++|++++|.++...|..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            5788999999999888888999999999999999998 88888765 889999999999998777888899999999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC----------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS----------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ++|.+.+.++...+..+++|+.+++++|.                ++.+++++|.+.+..+..+..+++|++|++++|.+
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            99988777777766678999999998874                34678888888877788888889999999999988


Q ss_pred             cccCc-hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCccccc-CC--Ccc-------eeee--------e
Q 044683          147 QGPIP-IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGK-PC--GSL-------GLDI--------L  204 (247)
Q Consensus       147 ~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~-~~--~~~-------~l~l--------~  204 (247)
                      ++..+ ..+..+++|++|++++|.+++..+..+..   ...|++++|.+++. ++  ..+       .+++        .
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            86654 34778889999999999988777776643   33889999988762 11  111       2332        3


Q ss_pred             cchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          205 PHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       205 p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      |.++..  +|++|++++|++++..|..+++++.| .+
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            555555  77777777777777777777777766 44

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=2.5e-26  Score=192.00  Aligned_cols=222  Identities=21%  Similarity=0.229  Sum_probs=122.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            44555555555555444445555555555555555555 33333222355555555555555532222344555555555


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC--------------------------------------------------
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------------------------------------------  111 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------------------------------------------  111 (247)
                      +++|.+. .++...+..+++|+.|++++|.                                                  
T Consensus       148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~  226 (390)
T 3o6n_A          148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  226 (390)
T ss_dssp             CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred             CCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence            5555554 3333333334555555555442                                                  


Q ss_pred             -ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCC--CCCCCeEeccC
Q 044683          112 -LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC--FRTSSFVKKQD  188 (247)
Q Consensus       112 -l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~l~~  188 (247)
                       ++.+++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.....  +.....|++++
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS
T ss_pred             cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC
Confidence             23344444444432  34566677777777777777666667777777777777777776432221  12333777777


Q ss_pred             CcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          189 RRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       189 n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      |++++          +|.++..  +|++|++++|++++..   +..+++|+.++
T Consensus       305 n~l~~----------~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~  345 (390)
T 3o6n_A          305 NHLLH----------VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT  345 (390)
T ss_dssp             SCCCC----------CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred             Cccee----------cCccccccCcCCEEECCCCccceeC---chhhccCCEEE
Confidence            77664          3333444  8888888888887543   45555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.6e-26  Score=189.28  Aligned_cols=227  Identities=18%  Similarity=0.186  Sum_probs=137.1

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            5677777777777665666777777777777777776444444443 667777777777766 3444332  56666666


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCc------------------------------------cEEEccCCcCCCCC
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSL------------------------------------QGLYLSDNRLFGRI  126 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l------------------------------------~~l~l~~n~~~~~~  126 (247)
                      ++|.+. .++...+..+++|+.+++++|.+                                    +.+++++|.+++..
T Consensus       131 ~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence            666666 55555555566666666666533                                    24555555555555


Q ss_pred             chhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeee
Q 044683          127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDI  203 (247)
Q Consensus       127 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l  203 (247)
                      +..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.   ....|++++|++++..+..+    
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~----  284 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF----  284 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS----
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc----
Confidence            556666666777777777666555556666677777777777666 4444443   22266777776665433322    


Q ss_pred             ecchhc--C-CCceEeccCCeee--ecCCccccCCCchhhh
Q 044683          204 LPHLFR--R-RPRRLAVEGFDLV--LELPQIVCGLPTCFAL  239 (247)
Q Consensus       204 ~p~~~~--~-~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l  239 (247)
                      -+..+.  . .++.|++++|.+.  +..|..|..+++|+.+
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred             cccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence            000000  1 5677777777765  4456666666666655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=6e-27  Score=206.07  Aligned_cols=227  Identities=19%  Similarity=0.253  Sum_probs=118.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L   80 (247)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+.+.++. .+..+++|++|
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            45666666666666 45555666666666666666665332333322 55555555555554432222 24445555555


Q ss_pred             eccCCcccc-------------------------cCchhHhhcCCCccEEEccCCC---------------ccEEEccCC
Q 044683           81 DISHNQLTG-------------------------EIPERMATGCFSLEILALSNNS---------------LQGLYLSDN  120 (247)
Q Consensus        81 ~l~~n~~~~-------------------------~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n  120 (247)
                      ++++|.+.+                         .++...+..+++|+.+++++|.               ++.+++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            555555441                         2222222234444444444441               224455555


Q ss_pred             cCCCCCchhhhcccCcCeeeCcCCccccc---CchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCccccc
Q 044683          121 RLFGRIPRWLGNLLALEDIMMPNNNLQGP---IPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGK  194 (247)
Q Consensus       121 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~  194 (247)
                      .+.+..+..+..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|..+...   ..|++++|++++.
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS  515 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence            55444444455555555555555555431   11334455555555555555554444444321   1555555555543


Q ss_pred             CCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          195 PCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       195 ~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                               .|.++..  .| .|++++|++++..|..++.+++|+.++
T Consensus       516 ---------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          516 ---------SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             ---------GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred             ---------ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence                     3445555  67 888888888887777777776666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=3.5e-26  Score=201.03  Aligned_cols=222  Identities=21%  Similarity=0.229  Sum_probs=133.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            45666666666666555556666666666666666666 34433333366666666666666643333445666666666


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC--------------------------------------------------
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------------------------------------------  111 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------------------------------------------  111 (247)
                      +++|.+. .++...+..+++|+.|++++|.                                                  
T Consensus       154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            6666665 3333333345556666555553                                                  


Q ss_pred             -ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCC--CCCCCeEeccC
Q 044683          112 -LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC--FRTSSFVKKQD  188 (247)
Q Consensus       112 -l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~l~~  188 (247)
                       ++.|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.....  +.....|++++
T Consensus       233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence             2344555555543  345667777777777777777766777777777777777777777532222  22333777777


Q ss_pred             CcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          189 RRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       189 n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      |.+++          +|.++..  +|+.|++++|.+++..   +..+++|+.+.
T Consensus       311 N~l~~----------i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~  351 (597)
T 3oja_B          311 NHLLH----------VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT  351 (597)
T ss_dssp             SCCCC----------CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred             CCCCc----------cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEE
Confidence            77764          3444444  8888888888887643   44445554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=196.00  Aligned_cols=232  Identities=18%  Similarity=0.133  Sum_probs=161.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.++...+..++.+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46899999999999777778999999999999999998544444544 88999999999999866556688999999999


Q ss_pred             ccCCcccccCch-hHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683           82 ISHNQLTGEIPE-RMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        82 l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      +++|.++ .+|. ..+..+++|+.+++++|.               ++.+++++|.+++..|..+..+++|++|++++|.
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            9999998 7776 556668899999888772               2356666666666556666666666666666666


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC------CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEec
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR------TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAV  217 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~------~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l  217 (247)
                      ++......+..+++|++|++++|.+++..+..+.      ....++++++.+++..     +.-+|.++..  +|++|++
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~-----l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-----LFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH-----HHHHHHHHHTCTTCCEEEC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc-----hhhhHHHHhcccCCCEEEC
Confidence            6533223333466666666666666654333221      1224555555554321     1115666666  8999999


Q ss_pred             cCCeeeecCCccccCCCchhhhh
Q 044683          218 EGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       218 ~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      ++|++++..+..|+++++|+.+.
T Consensus       285 s~N~l~~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          285 SRNQLKSVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCccCHHHHhcCCCCCEEE
Confidence            99999854333468888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=6e-26  Score=185.64  Aligned_cols=214  Identities=19%  Similarity=0.244  Sum_probs=156.8

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            35778888888888766667888888888888888887444555554 788888888888877 4554432  6788888


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCc----------------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSL----------------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l----------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      +++|.+. .++...+..+++|+.+++++|.+                +.+++++|.++. +|..+.  ++|++|++++|.
T Consensus       128 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~  203 (330)
T 1xku_A          128 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK  203 (330)
T ss_dssp             CCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred             CCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence            8888887 66666666788888888887743                467777777763 444332  678888888888


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCC
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGF  220 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n  220 (247)
                      +++..+..+..+++|++|++++|.+++..+..+.   ....|++++|.++.          +|.++..  +|++|++++|
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----------VPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----------CCTTTTTCSSCCEEECCSS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----------CChhhccCCCcCEEECCCC
Confidence            8876677788888888888888888766665554   23388888888773          4444555  8999999999


Q ss_pred             eeeecCCccccCC
Q 044683          221 DLVLELPQIVCGL  233 (247)
Q Consensus       221 ~l~~~~~~~~~~l  233 (247)
                      ++++..+..|+..
T Consensus       274 ~i~~~~~~~f~~~  286 (330)
T 1xku_A          274 NISAIGSNDFCPP  286 (330)
T ss_dssp             CCCCCCTTSSSCS
T ss_pred             cCCccChhhcCCc
Confidence            9998777777644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=8.1e-27  Score=206.34  Aligned_cols=188  Identities=19%  Similarity=0.257  Sum_probs=159.2

Q ss_pred             CCCCcEEEccCCccccc-----------------cCcccc--CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC
Q 044683            1 MTSLKVLDASSNQLTGN-----------------ISPNLC--ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN   61 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n   61 (247)
                      +++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCC
Confidence            56899999999999985                 899988  9999999999999999899988876 999999999999


Q ss_pred             c-ccc-CChHhhhcC------CCCCEEeccCCcccccCch-hHhhcCCCccEEEccCCCcc-------------EEEccC
Q 044683           62 A-FNG-SIPSSFFDM------KMLKSLDISHNQLTGEIPE-RMATGCFSLEILALSNNSLQ-------------GLYLSD  119 (247)
Q Consensus        62 ~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~-------------~l~l~~  119 (247)
                      . +++ .+|..++.+      ++|++|++++|.++ .+|. ..+..+++|+.|++++|.++             .|++++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY  362 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence            8 887 789988876      99999999999999 8997 23446999999999999544             789999


Q ss_pred             CcCCCCCchhhhcccC-cCeeeCcCCcccccCchhhhCCC--CCCEEEccCCcCcCCCCCCCC----------CCCeEec
Q 044683          120 NRLFGRIPRWLGNLLA-LEDIMMPNNNLQGPIPIEFCQLE--LLTILDLSNNTIFGTLPSCFR----------TSSFVKK  186 (247)
Q Consensus       120 n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~----------~~~~L~l  186 (247)
                      |.++ .+|..+..+++ |++|++++|.++ .+|..+...+  +|++|++++|.+++..|..+.          ....|++
T Consensus       363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            9998 78888999999 999999999999 7787776654  889999999998877665554          1125566


Q ss_pred             cCCccc
Q 044683          187 QDRRTV  192 (247)
Q Consensus       187 ~~n~~~  192 (247)
                      ++|.++
T Consensus       441 s~N~l~  446 (636)
T 4eco_A          441 SNNQIS  446 (636)
T ss_dssp             CSSCCC
T ss_pred             cCCccC
Confidence            666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=3.8e-26  Score=201.43  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             chhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683          151 PIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       151 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                      |..+..+++|++|++++|++++..|..|...   ..|++++|++++..+         ..|..  +|++|++++|++++.
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~---------~~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---------FPYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC---------GGGTTCTTCCEEECTTSCCCBC
T ss_pred             chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh---------hHHhCCCCCCEEECCCCcCCCC
Confidence            3444555555555555555555555444322   255555555554332         33444  888899999998888


Q ss_pred             CCccccCC-Cchhhhh
Q 044683          226 LPQIVCGL-PTCFALG  240 (247)
Q Consensus       226 ~~~~~~~l-~~L~~l~  240 (247)
                      .|+.+..+ ++|+.++
T Consensus       558 ~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          558 KKQELQHFPSSLAFLN  573 (635)
T ss_dssp             CSSCTTCCCTTCCEEE
T ss_pred             CHHHHHhhhCcCCEEE
Confidence            88888777 4666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.5e-26  Score=193.39  Aligned_cols=209  Identities=22%  Similarity=0.186  Sum_probs=142.8

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++++.|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            35788999999999888888999999999999999998 55555555588999999999999866666788899999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCC---------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      +++|.+. .++...+..+++|+.|++++|               +++.|++++|.++. +| .+..+++|++|++++|.+
T Consensus       143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCC
T ss_pred             CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCcc
Confidence            9999988 777777777889998888874               34455555555552 23 245555566666666666


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD  221 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~  221 (247)
                      ++..+..+..+++|+.|++++|.+++..+..|...   ..|++++|++++..+..         +..  +|+.|++++|.
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL---------FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT---------TSSCTTCCEEECCSSC
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH---------hccccCCCEEEcCCCC
Confidence            55555555566666666666666655555444322   25666666655432221         222  56666666665


Q ss_pred             ee
Q 044683          222 LV  223 (247)
Q Consensus       222 l~  223 (247)
                      +.
T Consensus       291 ~~  292 (440)
T 3zyj_A          291 WN  292 (440)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.3e-26  Score=192.71  Aligned_cols=210  Identities=20%  Similarity=0.147  Sum_probs=169.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            468999999999998889999999999999999999984 4444444599999999999999977677788999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCC---------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      +++|.+. .++...+..+++|+.|++++|               +++.|++++|++++. | .+..+++|++|++++|.+
T Consensus       154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred             CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence            9999998 788777778999999999874               456788888888753 3 467778888888888888


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD  221 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~  221 (247)
                      ++..+..+..+++|+.|++++|.+++..+..|...   ..|++++|++++..+..         +..  +|+.|++++|.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL---------FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS---------STTCTTCCEEECCSSC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH---------hccccCCCEEEccCCC
Confidence            87777888888888888888888887777666532   38888888887644332         233  78888888887


Q ss_pred             eee
Q 044683          222 LVL  224 (247)
Q Consensus       222 l~~  224 (247)
                      +..
T Consensus       302 ~~C  304 (452)
T 3zyi_A          302 WNC  304 (452)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=6.6e-26  Score=201.97  Aligned_cols=236  Identities=24%  Similarity=0.222  Sum_probs=124.8

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.++...+.+|+.+++|++|++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            355555555555544444455555555555555555522232222 2555555555555555333334555555555555


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC--------------ccE--------------------------EEccCCcC
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQG--------------------------LYLSDNRL  122 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~--------------------------l~l~~n~~  122 (247)
                      ++|.+. .++...+..+++|++|++++|.              ++.                          +++++|.+
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            555554 3333333334455555554441              224                          44444444


Q ss_pred             CCCCchhhhcc---------------------------cCcCeeeCcCCcccccCchhhhCCC--CCCEEEccCCcCcCC
Q 044683          123 FGRIPRWLGNL---------------------------LALEDIMMPNNNLQGPIPIEFCQLE--LLTILDLSNNTIFGT  173 (247)
Q Consensus       123 ~~~~~~~~~~~---------------------------~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~  173 (247)
                      ++..+..+..+                           ++|+.|++++|.+++..+..+..++  +|++|++++|.+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            43333333221                           2334444444444444444444443  377777777777665


Q ss_pred             CCCCCCC---CCeEeccCCcccccCCCcc-------eeee-------------ecc----hhcC--CCceEeccCCeeee
Q 044683          174 LPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI-------------LPH----LFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       174 ~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l-------------~p~----~~~~--~L~~L~l~~n~l~~  224 (247)
                      .+..+..   ...|++++|.+++..|..+       .+++             +|.    ++..  +|++|++++|++++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            5555542   2277777777766555433       2221             222    4444  89999999999998


Q ss_pred             cCCccccCCCchhhhh
Q 044683          225 ELPQIVCGLPTCFALG  240 (247)
Q Consensus       225 ~~~~~~~~l~~L~~l~  240 (247)
                      ..+..|.++++|+.+.
T Consensus       344 ~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLS  359 (680)
T ss_dssp             CCTTTTTTCTTCCEEE
T ss_pred             CChhHhccccCCcEEE
Confidence            8888888888887765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.9e-26  Score=185.55  Aligned_cols=191  Identities=20%  Similarity=0.232  Sum_probs=112.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceee--cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG--HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++++|++++|.++...+..|..+++|++|++++|.++.  ..+..+.. +++|++|++++|.++ .+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            357788888888875444556778888888888887762  22444444 678888888888877 45666777888888


Q ss_pred             EeccCCcccccCch-hHhhcCCCccEEEccCCCc--------------cEEEccCCcCCC-CCchhhhcccCcCeeeCcC
Q 044683           80 LDISHNQLTGEIPE-RMATGCFSLEILALSNNSL--------------QGLYLSDNRLFG-RIPRWLGNLLALEDIMMPN  143 (247)
Q Consensus        80 L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l--------------~~l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~  143 (247)
                      |++++|.++ .++. ..+..+++|+.+++++|.+              +.|++++|.+.+ ..|..+..+++|++|++++
T Consensus       106 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            888888877 4443 3445577777777766633              244444444443 2344444445555555555


Q ss_pred             CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccC
Q 044683          144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKP  195 (247)
Q Consensus       144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~  195 (247)
                      |.+++..+..+..+++|++|++++|.+++..+..+.   ....|++++|++++..
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            555444444444455555555555555433333332   1124555555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.5e-26  Score=184.94  Aligned_cols=199  Identities=17%  Similarity=0.197  Sum_probs=171.1

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhc-------
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFD-------   73 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------   73 (247)
                      +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..+..       
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            468999999999999 88999999999999999999999 99988876 899999999998887788877654       


Q ss_pred             --CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683           74 --MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus        74 --l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  151 (247)
                        +++|++|++++|.++ .+|..+. .+++|+.|++++|.++           .+|..+..+++|++|++++|.+.+.+|
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-----------~l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-----------ALGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-----------CCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-----------cCchhhccCCCCCEEECcCCcchhhhH
Confidence              999999999999998 8988755 4888887777776654           356678999999999999999998999


Q ss_pred             hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          152 IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      ..+..+++|++|++++|.+.+.+|..+..   ...|++++|.+.+.+|.         ++..  +++.+++..+.+..
T Consensus       247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~---------~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---------LIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG---------GGGGSCTTCEEECCGGGSCC
T ss_pred             HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH---------HHhhccCceEEeCCHHHHHH
Confidence            99999999999999999999899987753   33999999999988655         4455  88899888776553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.6e-25  Score=177.38  Aligned_cols=202  Identities=19%  Similarity=0.195  Sum_probs=124.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L   80 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.. +++|++|++++|. ++...+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            35667777777776655566667777777777777776433444433 6677777777775 554446666667777777


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.++ .++...+..+++|+.+++++|.+          ++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus       111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL----------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ECCCCcCC-EECHhHhhCCcCCCEEECCCCcc----------cccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            77777766 44433444466666555555433          33334456666777777777777765545556667777


Q ss_pred             CEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          161 TILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      ++|++++|.+++..|..+...   ..|++++|.+++..+         .++..  +|++|++++|.+.+
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT---------EALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH---------HHHTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH---------HHcccCcccCEEeccCCCccC
Confidence            777777777766656555422   267777777665322         22333  67777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=6.6e-26  Score=189.46  Aligned_cols=224  Identities=20%  Similarity=0.174  Sum_probs=158.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++++.+++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...|..++.+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            57899999999999666666788999999999999998 55544444599999999999999987788899999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcc--------------
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNL--------------  133 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~--------------  133 (247)
                      +++|.++ .+|..++..+++|+.|++++|.              ++.|++++|.+++.....+..+              
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            9999998 8898887779999999999884              4488888888875432222111              


Q ss_pred             -----------------------cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEecc
Q 044683          134 -----------------------LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQ  187 (247)
Q Consensus       134 -----------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~  187 (247)
                                             ++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..   ...|+++
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence                                   1233334444444321  34455566666666666665554544432   2256666


Q ss_pred             CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|++++          +|..+..  +|++|++++|++++ +|..+..+++|+.|.
T Consensus       281 ~n~l~~----------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          281 NNRLVA----------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY  324 (390)
T ss_dssp             SSCCCE----------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred             CCcCcc----------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEE
Confidence            666554          2332333  78888888888874 566666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=194.14  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc--cCchhhhCCCCCCEEEccCCcCcCCCCC-CCC---CCCeEec
Q 044683          113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG--PIPIEFCQLELLTILDLSNNTIFGTLPS-CFR---TSSFVKK  186 (247)
Q Consensus       113 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~---~~~~L~l  186 (247)
                      +.+++++|.+++.+|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|. .+.   ....|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            356666666666666666777777777777777764  3445677777788888888877763443 233   2337888


Q ss_pred             cCCcccccCCCcc-----eeee-------ecchhcC--CCceEeccCCeeeecCCcc-ccCCCchhhhh
Q 044683          187 QDRRTVGKPCGSL-----GLDI-------LPHLFRR--RPRRLAVEGFDLVLELPQI-VCGLPTCFALG  240 (247)
Q Consensus       187 ~~n~~~~~~~~~~-----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~  240 (247)
                      ++|++++..|..+     .+++       +|.++..  +|++|++++|++++ +|.. +..+++|+.++
T Consensus       407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             cCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEE
Confidence            8888776554432     3333       6776656  88999999998885 4544 77777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3.6e-25  Score=194.80  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.. +++|++|++++|.++...+..++.+++|++|++
T Consensus        57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            4444444444444444444444444444444444444222333222 444444444444443222233333333333333


Q ss_pred             cCCcc
Q 044683           83 SHNQL   87 (247)
Q Consensus        83 ~~n~~   87 (247)
                      ++|.+
T Consensus       136 ~~n~l  140 (606)
T 3vq2_A          136 AHNFI  140 (606)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            33333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=5.2e-25  Score=192.27  Aligned_cols=83  Identities=24%  Similarity=0.241  Sum_probs=54.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L   80 (247)
                      ++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..   .+++|++|++++|.++. ..|..|+.+++|++|
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L  151 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL  151 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred             CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence            45666666666666655666666666666666666666 55555   26667777777777664 234667777777777


Q ss_pred             eccCCccc
Q 044683           81 DISHNQLT   88 (247)
Q Consensus        81 ~l~~n~~~   88 (247)
                      ++++|.+.
T Consensus       152 ~L~~n~l~  159 (562)
T 3a79_B          152 GLSAAKFR  159 (562)
T ss_dssp             EEECSBCC
T ss_pred             ecCCCccc
Confidence            77776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=3.8e-25  Score=197.12  Aligned_cols=232  Identities=24%  Similarity=0.266  Sum_probs=185.6

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      -+.++.+++.++ .+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.+++..|.+++.+++|++|+++
T Consensus         6 ~~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            6 HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SSEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             CCeeECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            357899999998 5666554  68999999999998 6666555559999999999999998889999999999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP  149 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  149 (247)
                      +|.++ .+|...+..+++|++|++++|              +++.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        82 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           82 HNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            99998 888876777999999999988              355899999999988888899999999999999999977


Q ss_pred             Cchhhh--CCCCCCEEEccCCcCcCCCCCCCC------------------------------CCCeEeccCCcccccCCC
Q 044683          150 IPIEFC--QLELLTILDLSNNTIFGTLPSCFR------------------------------TSSFVKKQDRRTVGKPCG  197 (247)
Q Consensus       150 ~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~------------------------------~~~~L~l~~n~~~~~~~~  197 (247)
                      .+..+.  .+++|++|++++|.+++..+..+.                              ....|++++|.+++..|.
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            666654  568999999999999877765443                              122677777777766554


Q ss_pred             cc---------eeee--------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          198 SL---------GLDI--------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       198 ~~---------~l~l--------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      .+         .+++        .|.++..  +|++|++++|++++..|..++++++|+.+.
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN  302 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence            33         2222        3455555  788888888888877777777777666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=204.14  Aligned_cols=149  Identities=20%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|...+.+++..+..+++|++|++++|.+....|.+|+.+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            46788888888888777777788888888888877554466444444477788888888877766677777777788888


Q ss_pred             ccCCcccccCchh-HhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcc--cCcCeeeCcC
Q 044683           82 ISHNQLTGEIPER-MATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNL--LALEDIMMPN  143 (247)
Q Consensus        82 l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~--~~L~~L~l~~  143 (247)
                      +++|.+++.++.. .+..+++|+.|++++|.               |+.|++++|.+++..+..+..+  ++|+.|++++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            8777776544433 34457777777777763               3366666666666555555444  4455555555


Q ss_pred             CcccccC
Q 044683          144 NNLQGPI  150 (247)
Q Consensus       144 n~~~~~~  150 (247)
                      |.+.+..
T Consensus       184 n~l~~~~  190 (844)
T 3j0a_A          184 NSLYSRV  190 (844)
T ss_dssp             SBSCCCC
T ss_pred             Ccccccc
Confidence            5444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2e-25  Score=178.05  Aligned_cols=203  Identities=21%  Similarity=0.210  Sum_probs=158.4

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ++++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            5889999999998777778888999999999999888 455444445888999999999988777778888999999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC-
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT-  161 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~-  161 (247)
                      ++|.+. .++...+..+++|+.|++++|.++.+         .+|..+..+++|++|++++|++++..+..+..+++|+ 
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC---------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCcccee---------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            999887 55554445577777666666655422         3578889999999999999999977667777666666 


Q ss_pred             ---EEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683          162 ---ILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       162 ---~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                         .|++++|.+++..+..+...+  .|++++|.+++..+..         +..  +|+.|++++|.+++.
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI---------FDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT---------TTTCCSCCEEECCSSCBCCC
T ss_pred             cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhH---------hcccccccEEEccCCccccc
Confidence               899999999977777766444  8999999998654322         343  899999999998853

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.8e-25  Score=178.08  Aligned_cols=207  Identities=20%  Similarity=0.149  Sum_probs=170.2

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|+.|++++|.++..  ..+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcC-CCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            5789999999988742  45788999999999999998 444 4444 88999999999999977777788999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ----------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccC----------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            9999998 677666666888887766666554          44566678899999999999999977777788999999


Q ss_pred             EEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCchhh
Q 044683          162 ILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFA  238 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  238 (247)
                      +|++++|.+++..+..+..   ...|++++|.+.+..|              .++.|++++|+++|.+|..++.++....
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--------------~l~~l~~~~n~~~g~ip~~~~~~~~~~~  250 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--------------GIRYLSEWINKHSGVVRNSAGSVAPDSA  250 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT--------------TTHHHHHHHHHTGGGBBCTTSCBCGGGS
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc--------------HHHHHHHHHHhCCCcccCcccccCCCCC
Confidence            9999999999877766643   3399999999988765              6889999999999999999888765443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.3e-25  Score=181.69  Aligned_cols=227  Identities=24%  Similarity=0.235  Sum_probs=182.3

Q ss_pred             CCCCcEEEccCCccccc--cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCC
Q 044683            1 MTSLKVLDASSNQLTGN--ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKML   77 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L   77 (247)
                      +++|++|++++|.++..  .+..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++...+ ..+..+++|
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCC
Confidence            46789999999988743  3667778899999999999998 67777655 8899999999999885443 578889999


Q ss_pred             CEEeccCCcccccCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCc
Q 044683           78 KSLDISHNQLTGEIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMP  142 (247)
Q Consensus        78 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  142 (247)
                      ++|++++|.+. ..+...+..+++|+.|++++|.               ++.|++++|.+++..+..+..+++|++|+++
T Consensus       129 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            99999999888 4444445568899999998883               4588999999998888899999999999999


Q ss_pred             CCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC----CCeEeccCCcccccCCCcceeeeecchhcCCCceEecc
Q 044683          143 NNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT----SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVE  218 (247)
Q Consensus       143 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~  218 (247)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..    ...|++++|.+++..+...    ++.|+. ..+.+.+.
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~----~~~~l~-~~~~~~~~  282 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS----FLQWIK-DQRQLLVE  282 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHH----HHHHHH-HTGGGBSC
T ss_pred             CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHH----HHHHHH-hhhhhhcc
Confidence            99999777778899999999999999999888876653    2399999999987643222    445555 55566677


Q ss_pred             CCeeeecCCccccCCCc
Q 044683          219 GFDLVLELPQIVCGLPT  235 (247)
Q Consensus       219 ~n~l~~~~~~~~~~l~~  235 (247)
                      .+.+....|..+.+.+-
T Consensus       283 ~~~~~C~~p~~~~g~~~  299 (306)
T 2z66_A          283 VERMECATPSDKQGMPV  299 (306)
T ss_dssp             GGGCBEEESGGGTTCBG
T ss_pred             ccccccCCchhhCCcee
Confidence            78888888988877643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.6e-25  Score=202.67  Aligned_cols=234  Identities=19%  Similarity=0.197  Sum_probs=168.1

Q ss_pred             CCCCcEEEccCCcccc-----------------ccCcccc--CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC
Q 044683            1 MTSLKVLDASSNQLTG-----------------NISPNLC--ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN   61 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n   61 (247)
                      |++|++|++++|.+++                 .+|..+.  .+++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence            4678999999999987                 3788877  8999999999999888888877776 889999999999


Q ss_pred             c-ccc-CChHhhhcCC-------CCCEEeccCCcccccCch-hHhhcCCCccEEEccCCC------------ccEEEccC
Q 044683           62 A-FNG-SIPSSFFDMK-------MLKSLDISHNQLTGEIPE-RMATGCFSLEILALSNNS------------LQGLYLSD  119 (247)
Q Consensus        62 ~-l~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~------------l~~l~l~~  119 (247)
                      . +++ .+|..++.++       +|++|++++|.++ .+|. ..+..+++|+.|++++|.            ++.|++++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence            7 876 6787776665       8999999999998 8887 234458899999988884            44778888


Q ss_pred             CcCCCCCchhhhcccC-cCeeeCcCCcccccCchhhhCCCC--CCEEEccCCcCcCCCCCCC------------------
Q 044683          120 NRLFGRIPRWLGNLLA-LEDIMMPNNNLQGPIPIEFCQLEL--LTILDLSNNTIFGTLPSCF------------------  178 (247)
Q Consensus       120 n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~------------------  178 (247)
                      |.++ .+|..+..+++ |++|++++|.++ .+|..+...+.  |+.|++++|.+++.+|...                  
T Consensus       605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            8888 77877888888 888888888887 66666555433  6666666666665433211                  


Q ss_pred             --------------CCCCeEeccCCcccccCCCc--------------c-eeee-------ecchhc--C--CCceEecc
Q 044683          179 --------------RTSSFVKKQDRRTVGKPCGS--------------L-GLDI-------LPHLFR--R--RPRRLAVE  218 (247)
Q Consensus       179 --------------~~~~~L~l~~n~~~~~~~~~--------------~-~l~l-------~p~~~~--~--~L~~L~l~  218 (247)
                                    .....|++++|.++ .+|..              + .|++       +|..+.  .  +|+.|+++
T Consensus       683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          683 NEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             SCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC
T ss_pred             CcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC
Confidence                          11225566666555 22221              1 2222       566654  3  77777777


Q ss_pred             CCeeeecCCccccCCCchhhhh
Q 044683          219 GFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       219 ~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|++++ +|..++++++|+.|.
T Consensus       762 ~N~L~~-lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          762 YNCFSS-FPTQPLNSSQLKAFG  782 (876)
T ss_dssp             SSCCSS-CCCGGGGCTTCCEEE
T ss_pred             CCCCCc-cchhhhcCCCCCEEE
Confidence            777775 566677777766664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.2e-25  Score=177.04  Aligned_cols=213  Identities=21%  Similarity=0.183  Sum_probs=172.6

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      ++++.++++++ .+|..+  .+++++|++++|.++ .++...+..+++|++|++++|.++...|.++..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            57888888888 455544  468999999999999 55554445589999999999999987788999999999999999


Q ss_pred             Cc-ccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683           85 NQ-LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL  163 (247)
Q Consensus        85 n~-~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  163 (247)
                      |. +. .++...+..+++|+.|++++|.+          ++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           90 NAQLR-SVDPATFHGLGRLHTLHLDRCGL----------QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCC-CCCTTTTTTCTTCCEEECTTSCC----------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcc-ccCHHHhcCCcCCCEEECCCCcC----------CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            97 76 66555555678887666666554          44557788899999999999999997767778999999999


Q ss_pred             EccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhh
Q 044683          164 DLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFA  238 (247)
Q Consensus       164 ~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~  238 (247)
                      ++++|.+++..+..+..   ...|++++|.+++..|.         ++..  +|+.|++++|++++..+..+..+++|+.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH---------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHh---------HccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence            99999999766665653   33999999999876544         3454  8999999999999877777899988887


Q ss_pred             hhc
Q 044683          239 LGK  241 (247)
Q Consensus       239 l~~  241 (247)
                      ++-
T Consensus       230 L~l  232 (285)
T 1ozn_A          230 LRL  232 (285)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=194.74  Aligned_cols=124  Identities=23%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            35777888888777666677777778888888888777444545544 777888888877777 45554  677777777


Q ss_pred             ccCCcccc-cCchhHhhcCCCccEEEccCCCc-------------cEEEccCCcC--CCCCchhh
Q 044683           82 ISHNQLTG-EIPERMATGCFSLEILALSNNSL-------------QGLYLSDNRL--FGRIPRWL  130 (247)
Q Consensus        82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~--~~~~~~~~  130 (247)
                      +++|.+++ .+|..+. .+++|+.|++++|.+             +.+++++|.+  .+..|..+
T Consensus        97 L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l  160 (520)
T 2z7x_B           97 LSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL  160 (520)
T ss_dssp             CCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred             ccCCccccccchhhhc-cCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccc
Confidence            77777763 2444443 477777777777744             6677777766  44444433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.9e-25  Score=200.98  Aligned_cols=233  Identities=18%  Similarity=0.253  Sum_probs=152.6

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eee-cCCchhhhhcc-------cccEEEccCCccccCChH--
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRG-HIPVEIGTYLL-------VFIHLNLSRNAFNGSIPS--   69 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--   69 (247)
                      +++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..++. ++       +|++|++++|.++ .+|.  
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            4678888888888888888888888888888888887 776 67776654 44       7888888888877 6666  


Q ss_pred             hhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC-------------C-ccEEEccCCcCCCCCchhhh----
Q 044683           70 SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------------S-LQGLYLSDNRLFGRIPRWLG----  131 (247)
Q Consensus        70 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~-l~~l~l~~n~~~~~~~~~~~----  131 (247)
                      .++.+++|++|++++|.++ .+|  .+..+++|+.|++++|             . ++.|++++|.++ .+|..+.    
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence            7777777777777777776 666  2333555555555555             1 334444444444 2332221    


Q ss_pred             ---------------------------cccCcCeeeCcCCcccccCchh-hhCCCCCCEEEccCCcCcCCCCCCCC----
Q 044683          132 ---------------------------NLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTIFGTLPSCFR----  179 (247)
Q Consensus       132 ---------------------------~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~----  179 (247)
                                                 ..++|+.|++++|.++ .+|.. +..+++|+.|++++|.++...+..+.    
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG  722 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence                                       1235666666666666 34433 34678888888888888733333333    


Q ss_pred             ------CCCeEeccCCcccccCCCcc---------eeee-------ecchhcC--CCceEeccC------CeeeecCCcc
Q 044683          180 ------TSSFVKKQDRRTVGKPCGSL---------GLDI-------LPHLFRR--RPRRLAVEG------FDLVLELPQI  229 (247)
Q Consensus       180 ------~~~~L~l~~n~~~~~~~~~~---------~l~l-------~p~~~~~--~L~~L~l~~------n~l~~~~~~~  229 (247)
                            ....|++++|+++ .+|..+         .|++       +|.++..  +|+.|++++      |++.+.+|..
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence                  2337778887777 333322         3333       6666666  788888865      6777778888


Q ss_pred             ccCCCchhhhhc
Q 044683          230 VCGLPTCFALGK  241 (247)
Q Consensus       230 ~~~l~~L~~l~~  241 (247)
                      ++++++|+.|+-
T Consensus       802 l~~L~~L~~L~L  813 (876)
T 4ecn_A          802 ITTCPSLIQLQI  813 (876)
T ss_dssp             GGGCSSCCEEEC
T ss_pred             HhcCCCCCEEEC
Confidence            888877776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=4.8e-25  Score=200.80  Aligned_cols=229  Identities=18%  Similarity=0.129  Sum_probs=129.6

Q ss_pred             CCCcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHh--hhcCCCCC
Q 044683            2 TSLKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS--FFDMKMLK   78 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~   78 (247)
                      ++|++|++++|...+.+ |..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..  ++.+++|+
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            45666666666433333 556666666666666666666444444443 666666666666665444433  55666666


Q ss_pred             EEeccCCcccccCchhHhhcCCCccEEEccCCC----------------------------------------------c
Q 044683           79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS----------------------------------------------L  112 (247)
Q Consensus        79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------------------------------------------l  112 (247)
                      +|++++|.+++..+...+..+++|+.|++++|.                                              +
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            666666666533333334446666666666552                                              3


Q ss_pred             cEEEccCCcCCCCCchhhhc--------------------------------------ccCcCeeeCcCCcccccCchhh
Q 044683          113 QGLYLSDNRLFGRIPRWLGN--------------------------------------LLALEDIMMPNNNLQGPIPIEF  154 (247)
Q Consensus       113 ~~l~l~~n~~~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~~~~~~~~~l  154 (247)
                      +.+++++|.+++..+..+..                                      .++++.|++++|.+++..+..+
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence            34444444443333222211                                      1345555666665555555555


Q ss_pred             hCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCcc
Q 044683          155 CQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQI  229 (247)
Q Consensus       155 ~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~  229 (247)
                      ..+++|+.|++++|.+++..+..|...   ..|++++|.+++..+         .++..  +|+.|++++|++++..+..
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---------SNFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---------CSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---------HHhcCCCCCCEEECCCCCCCccChhh
Confidence            666666666666666665555544322   266666666654433         33444  7888888888777766667


Q ss_pred             ccCCCchhhhh
Q 044683          230 VCGLPTCFALG  240 (247)
Q Consensus       230 ~~~l~~L~~l~  240 (247)
                      |..+++|+.|+
T Consensus       358 ~~~l~~L~~L~  368 (844)
T 3j0a_A          358 FKFLEKLQTLD  368 (844)
T ss_dssp             SCSCCCCCEEE
T ss_pred             hcCCCCCCEEE
Confidence            77777776664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-25  Score=195.76  Aligned_cols=224  Identities=20%  Similarity=0.175  Sum_probs=162.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      .+++.+++++|.+....+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            5689999999999977777788899999999999999954444554 499999999999999988888889999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcc--------------
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNL--------------  133 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~--------------  133 (247)
                      +++|.++ .+|..++..+++|+.|++++|.              ++.|++++|.+++.....+..+              
T Consensus       130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            9999998 8888877779999999999984              4478888888875432222111              


Q ss_pred             -----------------------cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEecc
Q 044683          134 -----------------------LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQ  187 (247)
Q Consensus       134 -----------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~  187 (247)
                                             ++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+...   ..|+++
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                                   123334444444432  2345566666666666666665555555322   266666


Q ss_pred             CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|.+++          +|..+..  +|+.|++++|.++ .+|..++.+++|+.|+
T Consensus       287 ~N~l~~----------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          287 NNRLVA----------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             TSCCCE----------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCCC----------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            666665          2333333  8999999999888 4677777777776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=3.2e-25  Score=193.63  Aligned_cols=124  Identities=23%  Similarity=0.220  Sum_probs=99.5

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            46899999999999877789999999999999999999555555554 899999999999998 56655  799999999


Q ss_pred             ccCCcccccCch-hHhhcCCCccEEEccCCCc-------------cEEEccCCcC--CCCCchhh
Q 044683           82 ISHNQLTGEIPE-RMATGCFSLEILALSNNSL-------------QGLYLSDNRL--FGRIPRWL  130 (247)
Q Consensus        82 l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~--~~~~~~~~  130 (247)
                      +++|.++ .++. ..+..+++|+.|++++|.+             +.+++++|.+  ++..|..+
T Consensus       128 Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l  191 (562)
T 3a79_B          128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL  191 (562)
T ss_dssp             CCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred             CCCCCcc-ccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccc
Confidence            9999998 5442 3344699999999998854             6788888877  44444333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.5e-24  Score=188.59  Aligned_cols=111  Identities=17%  Similarity=0.038  Sum_probs=62.3

Q ss_pred             hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc---eeee---
Q 044683          130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL---GLDI---  203 (247)
Q Consensus       130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~---~l~l---  203 (247)
                      +..+++|++|++++|+++ .+|..+..+++|++|++++|.+++...........|++++|++++.+...-   .|++   
T Consensus       383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN  461 (549)
T ss_dssp             GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence            444455555555555554 344444445555555555555542211111233356666666654322111   3333   


Q ss_pred             ----ecchhcC-CCceEeccCCeeeecCCccccCCCchhhhhc
Q 044683          204 ----LPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPTCFALGK  241 (247)
Q Consensus       204 ----~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~  241 (247)
                          +|.+... +|++|++++|++++.+|..+..+++|+.++-
T Consensus       462 ~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence                6654333 8999999999999888888888888877653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=2.5e-24  Score=176.13  Aligned_cols=219  Identities=21%  Similarity=0.218  Sum_probs=150.1

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +++.++++++.++ .+|..+.  +.+++|++++|.+++..+..+. .+++|++|++++|.++...|.+++.+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4889999999988 5666553  6899999999999844444554 4899999999999999877899999999999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCC--CCchhhhcccCcCeeeCcCCcc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFG--RIPRWLGNLLALEDIMMPNNNL  146 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~  146 (247)
                      ++|.++ .+|..++   ++|+.+++++|.              ++.+++++|.++.  ..+..+..+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999998 8887654   689999988884              4477888887753  445555544 555555555555


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee-------ecchhc
Q 044683          147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI-------LPHLFR  209 (247)
Q Consensus       147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l-------~p~~~~  209 (247)
                      ++ +|..+.  ++|++|++++|.+++..+..+..   ...|++++|.+++..+..+       .+++       +|.++.
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~  261 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP  261 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence            52 332221  45555555555555444444432   1255556655555443222       1222       555565


Q ss_pred             C--CCceEeccCCeeeecCCccccCC
Q 044683          210 R--RPRRLAVEGFDLVLELPQIVCGL  233 (247)
Q Consensus       210 ~--~L~~L~l~~n~l~~~~~~~~~~l  233 (247)
                      .  +|+.|++++|++++..+..|+..
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             cCccCCEEECCCCCCCccChhHcccc
Confidence            5  78888888888887666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.5e-25  Score=189.38  Aligned_cols=170  Identities=16%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +. .+++|++|++++|.+++. +    ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            367888888888887777788888888888888888875443  33 377888888888887743 2    237788888


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhh-CCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELL  160 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L  160 (247)
                      +++|.++ .++..   .+++|+.|++++|          .+++..|..+..+++|++|++++|.+++..|..+. .+++|
T Consensus       106 L~~N~l~-~~~~~---~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          106 AANNNIS-RVSCS---RGQGKKNIYLANN----------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             CCSSCCC-CEEEC---CCSSCEEEECCSS----------CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CcCCcCC-CCCcc---ccCCCCEEECCCC----------CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence            8888887 34332   2455665555555          44444454555555555666666655554444443 45555


Q ss_pred             CEEEccCCcCcCCCCCCC-CCCCeEeccCCcccc
Q 044683          161 TILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVG  193 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~  193 (247)
                      +.|++++|.+++..+... .....|++++|.+++
T Consensus       172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE
T ss_pred             cEEecCCCccccccccccCCCCCEEECCCCCCCC
Confidence            566666655554322221 223355555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=3.1e-24  Score=182.68  Aligned_cols=193  Identities=22%  Similarity=0.177  Sum_probs=170.8

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            468999999999999888899999999999999999998 7777766669999999999999997767789999999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++++|...+.++...+..+++|+.|++++|.            ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence            9999544347888777789999999999984            5589999999999889999999999999999999998


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCccccc
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGK  194 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~  194 (247)
                      ..+..+..+++|+.|++++|++++..+..+..   ...|++++|.+.-.
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            88899999999999999999999777766653   33999999997643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2.9e-24  Score=182.24  Aligned_cols=192  Identities=22%  Similarity=0.205  Sum_probs=170.0

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            468999999999999888899999999999999999998 7777666669999999999999997777789999999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++++|...+.++...+..+++|+.|++++|.            ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence            9999544447888778889999999999984            5589999999998889999999999999999999998


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccc
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVG  193 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~  193 (247)
                      ..+..+..+++|++|++++|++++..+..+..   ...|++++|.+.-
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            88889999999999999999999777766653   3399999999763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.8e-24  Score=186.78  Aligned_cols=38  Identities=24%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCcee
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLR   39 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~   39 (247)
                      ++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence            44555555555555444455555555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.2e-25  Score=178.71  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+  + ..+++|++|++++|.+++. +    ..++|++|++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l  106 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA  106 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence            56666666666665555566666666666666666653222  2 2356666666666666532 2    2356666666


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhh-CCCCCC
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELLT  161 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~  161 (247)
                      ++|.++ .++..   .+++|+.+++++          |.+++..+..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus       107 ~~n~l~-~~~~~---~~~~L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  172 (317)
T 3o53_A          107 ANNNIS-RVSCS---RGQGKKNIYLAN----------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (317)
T ss_dssp             CSSCCS-EEEEC---CCSSCEEEECCS----------SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCCccC-CcCcc---ccCCCCEEECCC----------CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence            666665 33322   134455555544          444444444455555555555555555544444332 455555


Q ss_pred             EEEccCCcCcCCCCCC-CCCCCeEeccCCcccc
Q 044683          162 ILDLSNNTIFGTLPSC-FRTSSFVKKQDRRTVG  193 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~-~~~~~~L~l~~n~~~~  193 (247)
                      +|++++|.+++..... +.....|++++|++++
T Consensus       173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECCSSCCCE
T ss_pred             EEECCCCcCcccccccccccCCEEECCCCcCCc
Confidence            5555555555332211 1223355555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-25  Score=181.08  Aligned_cols=206  Identities=20%  Similarity=0.186  Sum_probs=159.1

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..+  +..+++|++|++++|.++ .++.     .++|++|++++|.++...+.   .+++|++|
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L  125 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNI  125 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEE
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEE
Confidence            4689999999999986554  899999999999999998 4443     47899999999999865433   47889999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhh-hcccCcCeeeCcCCcccccCchhhhCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIEFCQLEL  159 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~  159 (247)
                      ++++|.++ .++...+..+++|+.|++++|.++.+          .+..+ ..+++|++|++++|.+++. + ....+++
T Consensus       126 ~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~  192 (317)
T 3o53_A          126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV----------NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAK  192 (317)
T ss_dssp             ECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEE----------EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTT
T ss_pred             ECCCCCCC-CccchhhhccCCCCEEECCCCCCCcc----------cHHHHhhccCcCCEEECCCCcCccc-c-ccccccc
Confidence            99999998 56554455577888777777766644          34444 4678999999999999854 3 2335899


Q ss_pred             CCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeee-ecCCccccCC
Q 044683          160 LTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLV-LELPQIVCGL  233 (247)
Q Consensus       160 L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~-~~~~~~~~~l  233 (247)
                      |++|++++|.+++..+. +.   ....|++++|.+++          +|.++..  +|+.|++++|.++ +.++..+..+
T Consensus       193 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~----------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             CCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE----------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             CCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc----------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            99999999999865554 43   33499999999885          2333444  8999999999998 6677788888


Q ss_pred             Cchhhhhc
Q 044683          234 PTCFALGK  241 (247)
Q Consensus       234 ~~L~~l~~  241 (247)
                      ++|+.+..
T Consensus       262 ~~L~~l~l  269 (317)
T 3o53_A          262 QRVQTVAK  269 (317)
T ss_dssp             HHHHHHHH
T ss_pred             ccceEEEC
Confidence            87777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=3.3e-24  Score=188.66  Aligned_cols=229  Identities=18%  Similarity=0.153  Sum_probs=121.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+|. +  .+++|++|++++|......  .+..+++|++|+
T Consensus       285 ~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  356 (606)
T 3vq2_A          285 ANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD  356 (606)
T ss_dssp             TTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred             CCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence            45666777777665 334 5666667777777777663 6662 2  2556666666655333222  344555555555


Q ss_pred             ccCCccccc--CchhHhhcCCCccEEEccCCC-------------ccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCCc
Q 044683           82 ISHNQLTGE--IPERMATGCFSLEILALSNNS-------------LQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        82 l~~n~~~~~--~~~~~~~~~~~L~~l~l~~n~-------------l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~  145 (247)
                      +++|.+++.  ++..+ ..+++|+.+++++|.             ++.+++++|.+.+..+ ..+..+++|++|++++|.
T Consensus       357 ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCCCcchhhhh-ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence            555555421  13322 235555555555552             2345555555554444 345555555555555555


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCC-CCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecc
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGT-LPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPH  206 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~  206 (247)
                      +++..|..+..+++|++|++++|.+++. +|..+..   ...|++++|.+++..|..+       .+++        .|.
T Consensus       436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            5555555555555555555555555542 3444332   2255555555555443322       1111        344


Q ss_pred             hhcC--CCceEeccCCeeeecCCccccCCC-chhhhh
Q 044683          207 LFRR--RPRRLAVEGFDLVLELPQIVCGLP-TCFALG  240 (247)
Q Consensus       207 ~~~~--~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~  240 (247)
                      ++..  +|++|++++|+++ .+|..+..++ +|+.+.
T Consensus       516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred             HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence            4555  6777777777777 3555566664 355543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=176.51  Aligned_cols=192  Identities=18%  Similarity=0.112  Sum_probs=89.2

Q ss_pred             CCCCCcEEEccCCceeecCCchhh-hhcccccEEEccCCccccCChHhhhcC-----CCCCEEeccCCcccccCchhHhh
Q 044683           24 ELVLLRELYIDNNDLRGHIPVEIG-TYLLVFIHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMAT   97 (247)
Q Consensus        24 ~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~   97 (247)
                      .+++|++|++++|.+++.+|..++ ..+++|++|++++|.+++. |..++.+     ++|++|++++|.+. .++...+.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc
Confidence            455556666666655555555442 2355556666666655543 4444444     55666666665555 33322333


Q ss_pred             cCCCccEEEccCCCccEEEccCCcCCCC--Cchhh--hcccCcCeeeCcCCcccc---cCchhhhCCCCCCEEEccCCcC
Q 044683           98 GCFSLEILALSNNSLQGLYLSDNRLFGR--IPRWL--GNLLALEDIMMPNNNLQG---PIPIEFCQLELLTILDLSNNTI  170 (247)
Q Consensus        98 ~~~~L~~l~l~~n~l~~l~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~n~l  170 (247)
                      .+++|+.|++++|.+.          +.  .+..+  ..+++|++|++++|.+++   .....+..+++|++|++++|.+
T Consensus       171 ~l~~L~~L~Ls~N~l~----------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          171 VFPALSTLDLSDNPEL----------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             CCSSCCEEECCSCTTC----------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             cCCCCCEEECCCCCcC----------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence            3555554444444321          11  11222  445555555555555542   1112223445555555555555


Q ss_pred             cCCCC-CCCC---CCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCchhhh
Q 044683          171 FGTLP-SCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       171 ~~~~~-~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      ++..| ..+.   ....|++++|.++ .+|..+         ..+|++|++++|++++. |. +..+++|+.+
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~---------~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L  301 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---------PAKLSVLDLSYNRLDRN-PS-PDELPQVGNL  301 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC---------CSEEEEEECCSSCCCSC-CC-TTTSCEEEEE
T ss_pred             CcccchhhhhhcCCCCEEECCCCccC-hhhhhc---------cCCceEEECCCCCCCCC-hh-HhhCCCCCEE
Confidence            54332 1111   2225555555555 222221         11455555555555543 33 5555554444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4e-23  Score=164.30  Aligned_cols=198  Identities=24%  Similarity=0.261  Sum_probs=140.8

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ..+.++++++.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3577888888888 4555544  57888888888887 566544445888888888888888555556677888888888


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      ++|.+. .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK----------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccC----------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            888887 677666666777776666655443          344556677788888888888887655566777888888


Q ss_pred             EEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          163 LDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       163 L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      |++++|.+++..+..|..   ...|++++|++++..+..         +..  +|+.|++++|.+..
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA---------FDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---------TTTCTTCCEEECCSSCBCC
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH---------hccccCCCEEEecCCCeeC
Confidence            888888887666655542   237888888877543321         333  78888888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=3.5e-25  Score=179.75  Aligned_cols=202  Identities=17%  Similarity=0.133  Sum_probs=160.2

Q ss_pred             CCCCcEEEccCCccccccCccc--cCCCCCcEEEccCCceeecCCchhhhhc-----ccccEEEccCCccccCChHhhhc
Q 044683            1 MTSLKVLDASSNQLTGNISPNL--CELVLLRELYIDNNDLRGHIPVEIGTYL-----LVFIHLNLSRNAFNGSIPSSFFD   73 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~   73 (247)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.++ .+|..+.. +     ++|++|++++|.+++..|..++.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4679999999999998888876  88999999999999999 44776665 5     89999999999999887789999


Q ss_pred             CCCCCEEeccCCcccccC--chhH-hhcCCCccEEEccCCCccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCCccccc
Q 044683           74 MKMLKSLDISHNQLTGEI--PERM-ATGCFSLEILALSNNSLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNNLQGP  149 (247)
Q Consensus        74 l~~L~~L~l~~n~~~~~~--~~~~-~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~  149 (247)
                      +++|++|++++|.+.+.+  +..+ +..+++|+.|++++|.++.+.        .++ ..+..+++|++|++++|.+++.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            999999999999976442  3232 245777877777666654210        122 3345779999999999999976


Q ss_pred             Cc-hhhhCCCCCCEEEccCCcCcCCCCCCCC-CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          150 IP-IEFCQLELLTILDLSNNTIFGTLPSCFR-TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       150 ~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      .| ..+..+++|++|++++|.++ .+|..+. ....|++++|++++. |.          +..  +|++|++++|++++
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~-p~----------~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRN-PS----------PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSC-CC----------TTTSCEEEEEECTTCTTTC
T ss_pred             cchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCC-hh----------HhhCCCCCEEeccCCCCCC
Confidence            64 45567899999999999999 6666554 334999999999975 32          233  89999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=2.2e-23  Score=183.78  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             CchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceee
Q 044683          126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLD  202 (247)
Q Consensus       126 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~  202 (247)
                      .|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|..   ...|++++|++++..|..+   
T Consensus       486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---  562 (635)
T 4g8a_A          486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL---  562 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT---
T ss_pred             CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH---
Confidence            4556777889999999999999888999999999999999999999888877753   3399999999998766543   


Q ss_pred             eecchhcC---CCceEeccCCeeee
Q 044683          203 ILPHLFRR---RPRRLAVEGFDLVL  224 (247)
Q Consensus       203 l~p~~~~~---~L~~L~l~~n~l~~  224 (247)
                            ..   +|+.|++++|.+..
T Consensus       563 ------~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          563 ------QHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             ------TCCCTTCCEEECTTCCBCC
T ss_pred             ------HhhhCcCCEEEeeCCCCcc
Confidence                  32   79999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=2.9e-24  Score=186.88  Aligned_cols=169  Identities=18%  Similarity=0.138  Sum_probs=140.2

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            46899999999999888889999999999999999999555555554 89999999999999987777899999999999


Q ss_pred             ccCCcccc-cCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683           82 ISHNQLTG-EIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      +++|.+++ ..|. .+..+++|+.|++++|.               ++.|++++|.+++..|..+..+++|++|++++|.
T Consensus       105 Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            99999973 2333 34568999999998874               4478888999988888888888888888888888


Q ss_pred             ccccCchh-hhCCCCCCEEEccCCcCcCC
Q 044683          146 LQGPIPIE-FCQLELLTILDLSNNTIFGT  173 (247)
Q Consensus       146 ~~~~~~~~-l~~~~~L~~L~l~~n~l~~~  173 (247)
                      +. .++.. +..+++|++|++++|.+++.
T Consensus       184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          184 SA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             ST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             cc-ccchhhHhhcccccEEEccCCccccc
Confidence            76 33433 45688899999999988763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=8e-23  Score=168.06  Aligned_cols=223  Identities=19%  Similarity=0.226  Sum_probs=140.7

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.++..  +.+..+++|++|++++|.++ .++. +. .+++|++|++++|...... ..+..+++|+++
T Consensus        87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L  160 (347)
T 4fmz_A           87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYL  160 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCC-GGGTTCTTCCEE
T ss_pred             CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCcccc-cchhhCCCCcEE
Confidence            46789999999988753  46888899999999999887 5555 33 3788888888888555333 337777788888


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++++|.+. .++.  +..+++|+.+++++|.            ++.+++++|.+.+..+  +..+++|++|++++|.+++
T Consensus       161 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          161 TVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             ECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             EecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence            88887776 4443  3457777777777763            3356666666654333  5566667777777776663


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCC--CCCCCCeEeccCCcccccCCCcc------eeee--------ecchhcC--
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPS--CFRTSSFVKKQDRRTVGKPCGSL------GLDI--------LPHLFRR--  210 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~l~~n~~~~~~~~~~------~l~l--------~p~~~~~--  210 (247)
                      . +. +..+++|++|++++|.+++. +.  .+.....|++++|.+++. +...      .+++        .|.++..  
T Consensus       236 ~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          236 L-SP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             C-GG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             C-cc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            3 22 56666666666666666632 21  111223666666666543 1100      1221        3334444  


Q ss_pred             CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          211 RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|++|++++|++++..|  +..+++|+.++
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             cCCEEEccCCccccccC--hhhhhccceee
Confidence            77777777777776544  66666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.2e-23  Score=163.18  Aligned_cols=183  Identities=26%  Similarity=0.281  Sum_probs=155.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|.++ .++..++..+++|++|++++|.++...+..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            35899999999999777778999999999999999998 88888777799999999999999977677788999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       116 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ----------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCccC-eeCHHHhCcCcCCCEEECCCCcCC----------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence            9999998 677666666888887777666554          34455678899999999999999977777788999999


Q ss_pred             EEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCC
Q 044683          162 ILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPC  196 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~  196 (247)
                      +|++++|.+++..+..+..   ...|++++|++....+
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            9999999999766666653   3399999999876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1e-22  Score=167.44  Aligned_cols=226  Identities=22%  Similarity=0.309  Sum_probs=177.2

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++.. . +..+++|++|++++|.++ .++ .+. .+++|++|++++|.++. .+. +..+++|+++
T Consensus        65 ~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLRELYLNEDNISD-ISP-LANLTKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCccEEEccCCccccch-h-hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEEECcCCcccC-chh-hccCCceeEE
Confidence            578999999999998543 3 899999999999999998 565 344 48999999999999984 444 8899999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++++|.....++.  +..+++|+.+++++|.            ++.+++++|.+.+..+  +..+++|+++++++|.+++
T Consensus       138 ~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          138 NLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             ECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence            9999965535444  4569999999999884            5689999999985433  7889999999999999985


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCC----cc-eeee-------ecchhcC--CCc
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCG----SL-GLDI-------LPHLFRR--RPR  213 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~----~~-~l~l-------~p~~~~~--~L~  213 (247)
                      ..+  +..+++|++|++++|.+++..+ ..+.....|++++|.+++....    .+ .+++       +| ++..  +|+
T Consensus       214 ~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~  290 (347)
T 4fmz_A          214 ITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLN  290 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred             Cch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCC
Confidence            433  7889999999999999986544 1222344999999998864111    01 3333       33 3444  899


Q ss_pred             eEeccCCeeeecCCccccCCCchhhhh
Q 044683          214 RLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       214 ~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|++++|++++..+..++.+++|+.++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEE
Confidence            999999998888888888888887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1e-23  Score=168.13  Aligned_cols=211  Identities=21%  Similarity=0.177  Sum_probs=165.8

Q ss_pred             EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683            6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus         6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      .++..+..++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4555666666 4565554  57999999999999 455434444899999999999999777778999999999999999


Q ss_pred             cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc-CchhhhCCCCCCEEE
Q 044683           86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP-IPIEFCQLELLTILD  164 (247)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~  164 (247)
                      .++ .++...+..+++|+.+++++|.++          +..+..+..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           87 PIQ-SLALGAFSGLSSLQKLVAVETNLA----------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             CCC-EECTTTTTTCTTCCEEECTTSCCC----------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccC-ccChhhhcCCccccEEECCCCCcc----------ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            998 566555566888887776666554          33455688899999999999999863 588999999999999


Q ss_pred             ccCCcCcCCCCCCCC---CCC----eEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCeeeecCCccccCCCch
Q 044683          165 LSNNTIFGTLPSCFR---TSS----FVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPTC  236 (247)
Q Consensus       165 l~~n~l~~~~~~~~~---~~~----~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L  236 (247)
                      +++|++++..+..+.   ...    .+++++|.+++..+..         +.. +|++|++++|++++..+..++.+++|
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---------FKEIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS---------SCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc---------cCCCcccEEECCCCceeecCHhHhcccccc
Confidence            999999977665553   222    7999999998754432         333 89999999999998777778888888


Q ss_pred             hhhh
Q 044683          237 FALG  240 (247)
Q Consensus       237 ~~l~  240 (247)
                      +.+.
T Consensus       227 ~~L~  230 (276)
T 2z62_A          227 QKIW  230 (276)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            8765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=5.1e-24  Score=172.74  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=36.3

Q ss_pred             CCCcEEEccCCceeecCCchhh-hhcccccEEEccCCccccCCh----HhhhcCCCCCEEeccCCcccccCchhHhhcCC
Q 044683           26 VLLRELYIDNNDLRGHIPVEIG-TYLLVFIHLNLSRNAFNGSIP----SSFFDMKMLKSLDISHNQLTGEIPERMATGCF  100 (247)
Q Consensus        26 ~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  100 (247)
                      +.|++|++++|.+++..|..++ ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+. .++...+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCC
Confidence            3355555555555444444431 224455555555555443222    22233445555555555554 33322233344


Q ss_pred             CccEEEccCC
Q 044683          101 SLEILALSNN  110 (247)
Q Consensus       101 ~L~~l~l~~n  110 (247)
                      +|+.|++++|
T Consensus       170 ~L~~L~Ls~N  179 (310)
T 4glp_A          170 ALTSLDLSDN  179 (310)
T ss_dssp             TCCEEECCSC
T ss_pred             CCCEEECCCC
Confidence            4444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=181.58  Aligned_cols=177  Identities=21%  Similarity=0.220  Sum_probs=137.5

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...|.+|+.+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            35889999999998877888999999999999999988 45444444588999999999998877778888999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC-
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL-  160 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L-  160 (247)
                      +++|.++ .++...+..+++|++|++++|.++.+         .+|..+..+++|++|++++|.+++..+..+..+++| 
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~---------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  176 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCC---------CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred             ccccccc-cCCCccccccccccEEecCCCcccee---------cChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence            9999888 66654455677888777666655422         357788888888999998888887767777777777 


Q ss_pred             ---CEEEccCCcCcCCCCCCCCCCC--eEeccCC
Q 044683          161 ---TILDLSNNTIFGTLPSCFRTSS--FVKKQDR  189 (247)
Q Consensus       161 ---~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n  189 (247)
                         +.+++++|.+++..+..+...+  .+++++|
T Consensus       177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             hhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence               7888888888877776665433  6666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=5.6e-23  Score=161.75  Aligned_cols=211  Identities=20%  Similarity=0.227  Sum_probs=157.6

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ..++++++++.++ .+|..+.  +.++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4678999999998 5666555  58999999999998 455544445899999999999999887888899999999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      ++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK----------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCC----------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            999998 777777667888887776666554          344566788999999999999999776678999999999


Q ss_pred             EEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCeeeecCCcccc
Q 044683          163 LDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDLVLELPQIVC  231 (247)
Q Consensus       163 L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~  231 (247)
                      |++++|.+++..+..+..   ...|++++|++.+..+...   -++.|+.. ..+..+..++.+.+..+...|
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C  229 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL---YLSQWIRENSNKVKDGTGQNLHESPDGVTC  229 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHH---HHHHHHHHSGGGBCC-------CCGGGCBB
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccH---HHHHHHHhcccceeeccCcccccCCCcCcc
Confidence            999999999777766653   3399999999987644321   14556555 444445566666554433333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=9.5e-23  Score=163.75  Aligned_cols=196  Identities=21%  Similarity=0.163  Sum_probs=139.8

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      ++++++++++++.++ .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.++.. +.. +.+++|++|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence            457888899888888 4555554  5788899999988844344444 488899999999988843 332 678889999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.++ .+|..+ ..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        83 ~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~----------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLT----------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             ECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCC----------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ECCCCcCC-cCchhh-ccCCCCCEEECCCCcCc----------ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            99999887 777644 34777776666655444          3445667778888888888888886666667788888


Q ss_pred             CEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          161 TILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      +.|++++|++++..+..|.   ....|++++|+++. +         |.++..  .|+.+++++|.+..
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-i---------p~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I---------PKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C---------CTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-c---------ChhhcccccCCeEEeCCCCccC
Confidence            8888888888865555554   23388888888874 2         223333  78888888887753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.8e-22  Score=171.91  Aligned_cols=174  Identities=17%  Similarity=0.168  Sum_probs=110.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.+++. | .+..+++|++|++++|.++ .+|  +. .+++|++|++++|.+++. +  ++.+++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            5678888888888754 4 5777888888888888887 444  33 377788888888887743 3  67777888888


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCc-----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSL-----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI  150 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  150 (247)
                      +++|.++ .++   +..+++|+.+++++|.+           +.+++++|...+.+  .+..+++|++|++++|.+++ +
T Consensus       113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l  185 (457)
T 3bz5_A          113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L  185 (457)
T ss_dssp             CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred             CCCCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence            8888777 454   33467777777777643           35555555433333  35556666666666666664 2


Q ss_pred             chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccc
Q 044683          151 PIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVG  193 (247)
Q Consensus       151 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~  193 (247)
                      +  +..+++|+.|++++|.+++..-..+.....|++++|++++
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred             c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc
Confidence            3  4556666666666666654321222233366666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=2.4e-22  Score=171.13  Aligned_cols=177  Identities=23%  Similarity=0.189  Sum_probs=140.7

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++. +  +..+++|++|++++|.++ .++  +. .+++|++|++++|.+++ ++  ++.+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            46899999999999864 3  888999999999999998 454  44 48899999999999985 44  7889999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++++|.++ .++   +..+++|+.+++++|            .++.+++++|.+++ +|  +..+++|+.|++++|.+++
T Consensus       133 ~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLT-EID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCccc-eec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence            99999998 454   345888999999888            46688999998886 34  7778888999999998885


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCC
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCG  197 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~  197 (247)
                      .   .+..+++|++|++++|++++.....+.....|++++|++++..+.
T Consensus       206 ~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          206 L---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             C---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCT
T ss_pred             e---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHH
Confidence            4   367788888899998888864322223444888888888876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.8e-23  Score=164.00  Aligned_cols=181  Identities=24%  Similarity=0.255  Sum_probs=152.1

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|
T Consensus        62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            57899999999999863  57899999999999999998 6666655559999999999999997777778999999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus       139 ~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ECCCCccC-ccCHHHhccCccCCEEECCCCCcC----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence            99999998 777766666888887766666554          4456667889999999999999998777888999999


Q ss_pred             CEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc
Q 044683          161 TILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL  199 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~  199 (247)
                      +.|++++|.+.+..|    ....++++.|.++|.+|.++
T Consensus       208 ~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          208 QYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             CEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCTT
T ss_pred             CEEEccCCCccccCc----HHHHHHHHHHhCCCcccCcc
Confidence            999999999986544    24478889999999877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=173.47  Aligned_cols=174  Identities=20%  Similarity=0.224  Sum_probs=122.8

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ....+.+++.++ .+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.++...+.+|..+++|++|+++
T Consensus        33 ~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            445778888888 5666554  48999999999998 5666444559999999999999998778889999999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCC-cccccCchhhhCCCCCC
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNN-NLQGPIPIEFCQLELLT  161 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~  161 (247)
                      +|.++ .++...+..+++|+.|++++|.++.+          .+ ..+..+++|++|++++| .+++..+..+..+++|+
T Consensus       109 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTL----------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             SSCCS-SCCHHHHTTCTTCSEEECTTCCCSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCcCC-cCCHhHhCCCccCCEEECCCCCCccc----------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            99998 78888777789999888888755411          11 24455566666666665 34444445555666666


Q ss_pred             EEEccCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683          162 ILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTV  192 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~  192 (247)
                      +|++++|.+++..|..+....   .|++++|.++
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            666666666555555554322   5556665553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=3.3e-22  Score=170.79  Aligned_cols=225  Identities=24%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..+  +..+++|++|++++|.++ .++. +. .+++|++|++++|.++.. +. +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence            4567888888888775433  777888888888888877 4444 43 377888888888887743 33 7777888888


Q ss_pred             eccCCcccccCchh-------------------HhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchh
Q 044683           81 DISHNQLTGEIPER-------------------MATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRW  129 (247)
Q Consensus        81 ~l~~n~~~~~~~~~-------------------~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~  129 (247)
                      ++++|.+. .++..                   .+..+++|+.+++++|            .++.+++++|.+.+..+  
T Consensus       140 ~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          140 ELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             EEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence            88887776 44320                   0122444555555554            23355555555554333  


Q ss_pred             hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCCcc-----eeee
Q 044683          130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSL-----GLDI  203 (247)
Q Consensus       130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~-----~l~l  203 (247)
                      +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+ ..+.....|++++|.+++..+...     .+++
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  294 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEc
Confidence            44455555555555555422  234555566666666665554332 011122255666665554322100     1222


Q ss_pred             -------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          204 -------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       204 -------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                             ++. +..  +|+.|++++|++++..|  +..+++|+.+.
T Consensus       295 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          295 NENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             CSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             CCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence                   222 222  67777777777766444  55555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=6.5e-23  Score=160.19  Aligned_cols=190  Identities=17%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcCCCCCEEeccC-CcccccCchhHhhcCCCccE
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDMKMLKSLDISH-NQLTGEIPERMATGCFSLEI  104 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~  104 (247)
                      .+++|++++|.++ .++...+..+++|++|++++|. ++...+.+|..+++|++|++++ |.++ .++...+..+++|+.
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            6677777777776 4444434446677777777775 6644455666677777777776 6666 555555555666665


Q ss_pred             EEccCCCccEEEccCCcCCCCCchhhhcccCcC---eeeCcCC-cccccCchhhhCCCCCC-EEEccCCcCcCCCCCCCC
Q 044683          105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALE---DIMMPNN-NLQGPIPIEFCQLELLT-ILDLSNNTIFGTLPSCFR  179 (247)
Q Consensus       105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~  179 (247)
                      +++++|.++.           +|. +..+++|+   +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.
T Consensus       110 L~l~~n~l~~-----------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          110 LGIFNTGLKM-----------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             EEEEEECCCS-----------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             EeCCCCCCcc-----------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            5555554432           233 45555555   7777777 66655555566677777 777777777644444444


Q ss_pred             CCC--eEeccCCc-ccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCch
Q 044683          180 TSS--FVKKQDRR-TVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTC  236 (247)
Q Consensus       180 ~~~--~L~l~~n~-~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  236 (247)
                      ..+  .|++++|+ +++..+..+     . .+..+|+.|++++|++++..+..+.+++.|
T Consensus       178 ~~~L~~L~L~~n~~l~~i~~~~~-----~-~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L  231 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYLTVIDKDAF-----G-GVYSGPSLLDVSQTSVTALPSKGLEHLKEL  231 (239)
T ss_dssp             TCEEEEEECTTCTTCCEECTTTT-----T-TCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred             CCCCCEEEcCCCCCcccCCHHHh-----h-ccccCCcEEECCCCccccCChhHhccCcee
Confidence            322  66777774 654333221     0 000167777777777775444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=9.1e-22  Score=168.06  Aligned_cols=119  Identities=19%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCccc
Q 044683          114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTV  192 (247)
Q Consensus       114 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~  192 (247)
                      .+++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+ ..+.....|++++|.++
T Consensus       247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence            45555555543322  4455555555555555553322  4555555555555555553322 11122235666666655


Q ss_pred             ccCCCcc-----eeee-------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          193 GKPCGSL-----GLDI-------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       193 ~~~~~~~-----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      +..|...     .+++       ++ .+..  +|+.|++++|++++..|  +..+++|+.+
T Consensus       323 ~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          323 DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             CchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence            5433111     1222       21 2333  66677777776666544  5555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.6e-23  Score=176.92  Aligned_cols=207  Identities=19%  Similarity=0.136  Sum_probs=160.9

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..+  +..+++|++|++++|.++ .++.     .++|++|++++|.+++..+.   .+++|++|
T Consensus        57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L  125 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNI  125 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEE
T ss_pred             CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEE
Confidence            4689999999999987655  899999999999999998 4443     37899999999999865443   46899999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh-cccCcCeeeCcCCcccccCchhhhCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG-NLLALEDIMMPNNNLQGPIPIEFCQLEL  159 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~  159 (247)
                      ++++|.+++..|.. +..+++|+.|++++|.++          +..|..+. .+++|++|++++|.+++. + ....+++
T Consensus       126 ~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~  192 (487)
T 3oja_A          126 YLANNKITMLRDLD-EGCRSRVQYLDLKLNEID----------TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAK  192 (487)
T ss_dssp             ECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCC----------EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTT
T ss_pred             ECCCCCCCCCCchh-hcCCCCCCEEECCCCCCC----------CcChHHHhhhCCcccEEecCCCccccc-c-ccccCCC
Confidence            99999998444443 344777776666666555          44566665 789999999999999965 3 2346999


Q ss_pred             CCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeee-ecCCccccCCC
Q 044683          160 LTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLV-LELPQIVCGLP  234 (247)
Q Consensus       160 L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~-~~~~~~~~~l~  234 (247)
                      |+.|++++|.+++.++....  ....|++++|.+++.          |.++..  +|+.|++++|.+. +.+|..+..++
T Consensus       193 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l----------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI----------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE----------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             CCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc----------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence            99999999999976665222  344999999999962          333444  8999999999998 56777788888


Q ss_pred             chhhhhc
Q 044683          235 TCFALGK  241 (247)
Q Consensus       235 ~L~~l~~  241 (247)
                      .+..+..
T Consensus       263 ~L~~l~~  269 (487)
T 3oja_A          263 RVQTVAK  269 (487)
T ss_dssp             HHHHHHH
T ss_pred             CCcEEec
Confidence            7776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.1e-22  Score=159.04  Aligned_cols=177  Identities=27%  Similarity=0.281  Sum_probs=148.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +.++.|++++|.+++..+..|..+++|++|++++|.++ .++..  ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            46899999999999888899999999999999999998 55544  34889999999999998 6788889999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus       107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          107 VSFNRLT-SLPLGALRGLGELQELYLKGNELK----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCC----------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence            9999999 777666667888887776666554          44566678899999999999999966667778899999


Q ss_pred             EEEccCCcCcCCCCCCCCC--CCeEeccCCcccc
Q 044683          162 ILDLSNNTIFGTLPSCFRT--SSFVKKQDRRTVG  193 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~~--~~~L~l~~n~~~~  193 (247)
                      .|++++|.++..+...+..  ...+++++|.+.-
T Consensus       176 ~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             EEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             EEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            9999999999544444443  3399999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=6e-23  Score=169.95  Aligned_cols=222  Identities=17%  Similarity=0.142  Sum_probs=152.2

Q ss_pred             CCCcEEEccCCccccccC----ccccCCC-CCcEEEccCCceeecCCchhhhh----cccccEEEccCCccccCChHhhh
Q 044683            2 TSLKVLDASSNQLTGNIS----PNLCELV-LLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGSIPSSFF   72 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~   72 (247)
                      ++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+...    .++|++|++++|.++...+..++
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            358999999999987666    6777888 89999999999986556555552    27899999999999876666544


Q ss_pred             c----C-CCCCEEeccCCcccccCchhHhh---c-CCCccEEEccCCC-------------------ccEEEccCCcCCC
Q 044683           73 D----M-KMLKSLDISHNQLTGEIPERMAT---G-CFSLEILALSNNS-------------------LQGLYLSDNRLFG  124 (247)
Q Consensus        73 ~----l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~l~l~~n~-------------------l~~l~l~~n~~~~  124 (247)
                      .    . ++|++|++++|.+++..+..+..   . ..+|+.|++++|.                   ++.|++++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence            4    3 78999999999988433333322   2 2588999888773                   4477888888876


Q ss_pred             CCchhhhc----c-cCcCeeeCcCCccccc----CchhhhC-CCCCCEEEccCCcCcCCCC-------CCCCCCCeEecc
Q 044683          125 RIPRWLGN----L-LALEDIMMPNNNLQGP----IPIEFCQ-LELLTILDLSNNTIFGTLP-------SCFRTSSFVKKQ  187 (247)
Q Consensus       125 ~~~~~~~~----~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~l~  187 (247)
                      ..+..+..    . ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+       ........|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            66654433    3 5788888888888752    3445554 4588888888888875433       122234478888


Q ss_pred             CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683          188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                      +|.+.+..+..  +..++..+..  +|+.||+++|++.+.
T Consensus       262 ~n~l~~i~~~~--~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          262 YDIVKNMSKEQ--CKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTCCHHH--HHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCccccCHHH--HHHHHHHhccCCceEEEecCCCcCCCc
Confidence            88755332211  1113333444  688999999988765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.6e-21  Score=157.97  Aligned_cols=188  Identities=19%  Similarity=0.250  Sum_probs=142.8

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            578999999999884 44 6888999999999999998 6666 44 48999999999999984 44 688999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++.  +..+++|+.|++++|.++          +. +. +..+++|++|++++|.+++. +. +..+++|+
T Consensus       114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~----------~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~  176 (308)
T 1h6u_A          114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQIT----------NI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLT  176 (308)
T ss_dssp             CTTSCCC-CCGG--GTTCTTCCEEECCSSCCC----------CC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred             CCCCCCC-Cchh--hcCCCCCCEEECCCCccC----------cC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCC
Confidence            9999998 5654  456888887777776554          22 22 67788888888888888743 33 77888888


Q ss_pred             EEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          162 ILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       162 ~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      +|++++|.+++..+ ..+.....|++++|++++..+           +..  +|+.|++++|.+++
T Consensus       177 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----------l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----------LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----------GTTCTTCCEEEEEEEEEEC
T ss_pred             EEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-----------ccCCCCCCEEEccCCeeec
Confidence            88888888875443 112234488888888876432           233  78888888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.5e-21  Score=153.64  Aligned_cols=160  Identities=23%  Similarity=0.217  Sum_probs=138.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +.++.|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            46899999999999888889999999999999999999 55555555599999999999999977777889999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++...+..+++|+.|++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ----------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCCCcCC-CcChhHhccCCcccEEECcCCcCC----------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            9999998 788777666888887766666554          44456788999999999999999977777899999999


Q ss_pred             EEEccCCcCcCC
Q 044683          162 ILDLSNNTIFGT  173 (247)
Q Consensus       162 ~L~l~~n~l~~~  173 (247)
                      .|++++|.++..
T Consensus       183 ~L~l~~N~~~c~  194 (251)
T 3m19_A          183 TITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSCCBCTT
T ss_pred             EEEeeCCceeCC
Confidence            999999999855

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.8e-22  Score=156.52  Aligned_cols=195  Identities=16%  Similarity=0.185  Sum_probs=155.3

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++++|++++|.+++..+..|..+++|++|++++|. ++ .++...+..+++|++|++++ |.++...+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            368999999999998777789999999999999997 87 67765555699999999998 9999776778999999999


Q ss_pred             EeccCCcccccCchhHhhcCCCcc---EEEccCC-CccEEEccCCcCCCCCchhhhcccCcC-eeeCcCCcccccCchhh
Q 044683           80 LDISHNQLTGEIPERMATGCFSLE---ILALSNN-SLQGLYLSDNRLFGRIPRWLGNLLALE-DIMMPNNNLQGPIPIEF  154 (247)
Q Consensus        80 L~l~~n~~~~~~~~~~~~~~~~L~---~l~l~~n-~l~~l~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l  154 (247)
                      |++++|.++ .+|.  +..+++|+   .+++++| .+          ++..+..+..+++|+ ++++++|.++...+..+
T Consensus       110 L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l----------~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYM----------TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             EEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTC----------CEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             EeCCCCCCc-cccc--cccccccccccEEECCCCcch----------hhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            999999998 6776  45577777   5555555 44          444456688899999 99999999994444444


Q ss_pred             hCCCCCCEEEccCCc-CcCCCCCCCCCC----CeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCe
Q 044683          155 CQLELLTILDLSNNT-IFGTLPSCFRTS----SFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFD  221 (247)
Q Consensus       155 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~  221 (247)
                      .. ++|+.|++++|+ +++..+..|...    ..|++++|++++..+..         +. +++.|+++++.
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~---------~~-~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG---------LE-HLKELIARNTW  237 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT---------CT-TCSEEECTTC-
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH---------hc-cCceeeccCcc
Confidence            44 899999999995 987767777543    39999999998643321         22 89999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=3.7e-21  Score=163.65  Aligned_cols=77  Identities=23%  Similarity=0.380  Sum_probs=46.9

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..    ..+|++|++++|.+++ +| .++.+++|++|++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            56677777777764 44 4677777777777777776 45543    2356666666666653 34 3555555555555


Q ss_pred             cCCccc
Q 044683           83 SHNQLT   88 (247)
Q Consensus        83 ~~n~~~   88 (247)
                      ++|.++
T Consensus       203 ~~N~l~  208 (454)
T 1jl5_A          203 DNNSLK  208 (454)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=9e-22  Score=150.49  Aligned_cols=158  Identities=20%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             cccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh
Q 044683           52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG  131 (247)
Q Consensus        52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~  131 (247)
                      ++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.++          +..+..+.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~   97 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ----------SLPNGVFD   97 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTT
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCC----------ccCHhHhc
Confidence            4444444444444333333444444444444444444 333333333444443333333222          12223334


Q ss_pred             cccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchh
Q 044683          132 NLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLF  208 (247)
Q Consensus       132 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~  208 (247)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..   ...|++++|.+.+..+            
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------------  165 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------------  165 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT------------
T ss_pred             CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC------------
Confidence            4444555555555554333333444555555555555554333333321   1145555555444333            


Q ss_pred             cCCCceEeccCCeeeecCCccccCCC
Q 044683          209 RRRPRRLAVEGFDLVLELPQIVCGLP  234 (247)
Q Consensus       209 ~~~L~~L~l~~n~l~~~~~~~~~~l~  234 (247)
                        .++.|+++.|+++|.+|+.++.++
T Consensus       166 --~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          166 --GIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             --TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             --CHHHHHHHHHhCCceeeccCcccc
Confidence              355555555555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=5.7e-23  Score=171.44  Aligned_cols=221  Identities=15%  Similarity=0.109  Sum_probs=158.5

Q ss_pred             CCCCcEEEccCCccccccC----ccccCCCCCcEEEccCCc---eeecCCchhh------hhcccccEEEccCCcccc--
Q 044683            1 MTSLKVLDASSNQLTGNIS----PNLCELVLLRELYIDNND---LRGHIPVEIG------TYLLVFIHLNLSRNAFNG--   65 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---i~~~~~~~~~------~~l~~L~~L~l~~n~l~~--   65 (247)
                      +++|++|++++|.++...+    ..+..+++|++|++++|.   +++.+|..+.      ..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4679999999999987644    346689999999999964   4445565552      337899999999999986  


Q ss_pred             --CChHhhhcCCCCCEEeccCCcccccCchhHhh---cC---------CCccEEEccCCCc------------------c
Q 044683           66 --SIPSSFFDMKMLKSLDISHNQLTGEIPERMAT---GC---------FSLEILALSNNSL------------------Q  113 (247)
Q Consensus        66 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~---------~~L~~l~l~~n~l------------------~  113 (247)
                        .+|..+..+++|++|++++|.+++..+..+..   .+         ++|+.|++++|.+                  +
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              36778889999999999999986333332222   13         7899999988844                  4


Q ss_pred             EEEccCCcCCC-----CCchhhhcccCcCeeeCcCCccc----ccCchhhhCCCCCCEEEccCCcCcCC----CCCC---
Q 044683          114 GLYLSDNRLFG-----RIPRWLGNLLALEDIMMPNNNLQ----GPIPIEFCQLELLTILDLSNNTIFGT----LPSC---  177 (247)
Q Consensus       114 ~l~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~---  177 (247)
                      .|++++|+++.     ..+..+..+++|++|++++|.++    ..++..+..+++|+.|++++|.+++.    ++..   
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            78888888763     23336777888888888888885    45677778888888888888888754    2333   


Q ss_pred             --CCCCCeEeccCCcccccCCCcceeeeecchh-cC--CCceEeccCCeeeecC
Q 044683          178 --FRTSSFVKKQDRRTVGKPCGSLGLDILPHLF-RR--RPRRLAVEGFDLVLEL  226 (247)
Q Consensus       178 --~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~-~~--~L~~L~l~~n~l~~~~  226 (247)
                        ......|++++|.+++..     +..+|.++ ..  +|++|++++|.+++..
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g-----~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDA-----VRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHH-----HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHH-----HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              233448888888887620     00133333 22  8888888888888654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=1.1e-20  Score=166.00  Aligned_cols=212  Identities=25%  Similarity=0.235  Sum_probs=102.8

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|.    .+++|++|++++|.++ .+|.   .+++|++|+++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            455566666555 4444333  45555555555555 4444    1445555555555555 2333   34555555555


Q ss_pred             CCcccccCchhH----------------hhcCCCccEEEccCCCc----------cEEEccCCcCCCCCchhhhcccCcC
Q 044683           84 HNQLTGEIPERM----------------ATGCFSLEILALSNNSL----------QGLYLSDNRLFGRIPRWLGNLLALE  137 (247)
Q Consensus        84 ~n~~~~~~~~~~----------------~~~~~~L~~l~l~~n~l----------~~l~l~~n~~~~~~~~~~~~~~~L~  137 (247)
                      +|.++ .+|...                ...+++|+.|++++|.+          +.|++++|.+++ +|   ..+++|+
T Consensus       110 ~N~l~-~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~  184 (622)
T 3g06_A          110 SNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQ  184 (622)
T ss_dssp             SCCCC-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred             CCcCC-CCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCc
Confidence            55554 333300                00123444444444422          233444444432 22   2236677


Q ss_pred             eeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc----eeee-------ecc
Q 044683          138 DIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL----GLDI-------LPH  206 (247)
Q Consensus       138 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~----~l~l-------~p~  206 (247)
                      .|++++|.+++ +|..   .++|+.|++++|.++ .+|..+.....|++++|.+++. |...    .|++       +|.
T Consensus       185 ~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~l-p~~l~~L~~L~Ls~N~L~~lp~  258 (622)
T 3g06_A          185 ELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSL-PVLPSELKELMVSGNRLTSLPM  258 (622)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCC
T ss_pred             EEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCcC-CCCCCcCcEEECCCCCCCcCCc
Confidence            77777777663 3322   234444444444444 2222223333555555555431 1111    2222       333


Q ss_pred             hhcCCCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          207 LFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       207 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      .+. +|+.|++++|+++ .+|..++++++|+.++
T Consensus       259 ~~~-~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          259 LPS-GLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             CCT-TCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             ccc-cCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            111 7888888888877 5677777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=5.1e-22  Score=160.95  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=142.0

Q ss_pred             CCCcEEEccCCccccccCccc--cCCCCCcEEEccCCceeecCC----chhhhhcccccEEEccCCccccCChHhhhcCC
Q 044683            2 TSLKVLDASSNQLTGNISPNL--CELVLLRELYIDNNDLRGHIP----VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK   75 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   75 (247)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+. .+++|++|++++|.++...+..++.++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence            458889999998888888777  788889999999998885444    2223 377889999999988877777888888


Q ss_pred             CCCEEeccCCccccc--CchhH-hhcCCCccEEEccCCCccEEEccCCcCCCCCch-hhhcccCcCeeeCcCCcccccCc
Q 044683           76 MLKSLDISHNQLTGE--IPERM-ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus        76 ~L~~L~l~~n~~~~~--~~~~~-~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~  151 (247)
                      +|++|++++|.+.+.  ++... ...+++|+.|++++|.++.+.        ..+. .+..+++|++|++++|.+++..|
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--------GVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--------HHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--------HHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            999999999886532  22111 134566665555555543210        1112 24677888999999998887667


Q ss_pred             hhhhCC---CCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeee
Q 044683          152 IEFCQL---ELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVL  224 (247)
Q Consensus       152 ~~l~~~---~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~  224 (247)
                      ..+..+   ++|++|++++|+++ .+|..+ .....|++++|++++. |.       +..+. +|+.|++++|+++.
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~-~~-------~~~l~-~L~~L~L~~N~l~~  308 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA-PQ-------PDELP-EVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC-CC-------TTSCC-CCSCEECSSTTTSC
T ss_pred             hhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC-ch-------hhhCC-CccEEECcCCCCCC
Confidence            666665   68889999999888 445444 3455888888888863 11       11111 78888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=1.4e-20  Score=160.12  Aligned_cols=211  Identities=27%  Similarity=0.346  Sum_probs=94.2

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..    .++|++|++++|.++ .+| .++.+++|++|++
T Consensus       174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l  244 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYA  244 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred             cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEEC
Confidence            34455555555543 23 3555566666666666555 34432    235666666666665 444 3666666777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCC----------ccEEEccCCcCCC--CCchhh-------------hcc-cCc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNS----------LQGLYLSDNRLFG--RIPRWL-------------GNL-LAL  136 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------l~~l~l~~n~~~~--~~~~~~-------------~~~-~~L  136 (247)
                      ++|.++ .+|.    ..++|+.+++++|.          ++.+++++|.+++  .+|..+             ..+ ++|
T Consensus       245 ~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L  319 (454)
T 1jl5_A          245 DNNLLK-TLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  319 (454)
T ss_dssp             CSSCCS-SCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             CCCcCC-cccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence            776666 4443    13455666655553          3345555555554  122111             111 355


Q ss_pred             CeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccc--cCCCcc-eeee------ecch
Q 044683          137 EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVG--KPCGSL-GLDI------LPHL  207 (247)
Q Consensus       137 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~--~~~~~~-~l~l------~p~~  207 (247)
                      ++|++++|++++ +|..   +++|++|++++|.+++ +|..+.....|++++|++++  .+|.++ .+..      +|..
T Consensus       320 ~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~  394 (454)
T 1jl5_A          320 EELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL  394 (454)
T ss_dssp             CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred             CEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence            566666666553 3322   4566666666666663 33333344467777777766  444443 1211      2221


Q ss_pred             hcCCCceEeccCCeeee--cCCccccCC
Q 044683          208 FRRRPRRLAVEGFDLVL--ELPQIVCGL  233 (247)
Q Consensus       208 ~~~~L~~L~l~~n~l~~--~~~~~~~~l  233 (247)
                      +. +|+.|++++|++++  .+|.++..+
T Consensus       395 ~~-~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          395 PQ-NLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             ----------------------------
T ss_pred             cC-cCCEEECCCCcCCccccchhhHhhe
Confidence            11 67777777777776  556555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.3e-21  Score=160.11  Aligned_cols=220  Identities=14%  Similarity=0.114  Sum_probs=151.0

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeec-CCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGH-IPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+. .+++|++|++++|.++...+..++.+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            4678888888888865554 55788899999999888754 554444 48889999999988887777888888899999


Q ss_pred             eccCC-cccccCchhHhhcCCCccEEEccCC-----------------CccEEEccCC--cCC-CCCchhhhcccCcCee
Q 044683           81 DISHN-QLTGEIPERMATGCFSLEILALSNN-----------------SLQGLYLSDN--RLF-GRIPRWLGNLLALEDI  139 (247)
Q Consensus        81 ~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~n-----------------~l~~l~l~~n--~~~-~~~~~~~~~~~~L~~L  139 (247)
                      ++++| .+++......+..+++|+.|++++|                 .++.|++++|  .++ +.++..+..+++|++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99888 5663222233445888888888887                 5567777777  444 3455666777888888


Q ss_pred             eCcCCc-ccccCchhhhCCCCCCEEEccCCc-CcCCCCCCC---CCCCeEeccCCcccccCCCcceeeeecchhcCCCce
Q 044683          140 MMPNNN-LQGPIPIEFCQLELLTILDLSNNT-IFGTLPSCF---RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRR  214 (247)
Q Consensus       140 ~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~---~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~  214 (247)
                      ++++|. +++..+..+..+++|++|++++|. ++......+   .....|++++| ++...        +. .+...+..
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~--------~~-~l~~~l~~  297 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT--------LQ-LLKEALPH  297 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC--------HH-HHHHHSTT
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH--------HH-HHHhhCcc
Confidence            888887 665666677778888888888874 322111122   23337788877 33211        00 01115788


Q ss_pred             EeccCCeeeecCCccccCC
Q 044683          215 LAVEGFDLVLELPQIVCGL  233 (247)
Q Consensus       215 L~l~~n~l~~~~~~~~~~l  233 (247)
                      |++++|++++..|..+++-
T Consensus       298 L~l~~n~l~~~~~~~~~~~  316 (336)
T 2ast_B          298 LQINCSHFTTIARPTIGNK  316 (336)
T ss_dssp             SEESCCCSCCTTCSSCSST
T ss_pred             eEEecccCccccCCccccc
Confidence            8899999998888877653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=8.2e-22  Score=163.11  Aligned_cols=230  Identities=17%  Similarity=0.097  Sum_probs=158.1

Q ss_pred             EEEccCCccccccCccccCCCCCcEEEccCCceeecCCc---hhhhhcc-cccEEEccCCccccCChHhhhcC-----CC
Q 044683            6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPV---EIGTYLL-VFIHLNLSRNAFNGSIPSSFFDM-----KM   76 (247)
Q Consensus         6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~   76 (247)
                      .+.+++|.+++.+|..+...+.|++|++++|.+++..+.   ..+..++ +|++|++++|.++...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            468899999988887777777799999999999843331   2333366 89999999999998778888775     99


Q ss_pred             CCEEeccCCcccccCchhHhh---cC-CCccEEEccCCC-------------------ccEEEccCCcCCCCCch----h
Q 044683           77 LKSLDISHNQLTGEIPERMAT---GC-FSLEILALSNNS-------------------LQGLYLSDNRLFGRIPR----W  129 (247)
Q Consensus        77 L~~L~l~~n~~~~~~~~~~~~---~~-~~L~~l~l~~n~-------------------l~~l~l~~n~~~~~~~~----~  129 (247)
                      |++|++++|.+++..+..+..   .. ++|+.|++++|.                   ++.|++++|.+++..+.    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998554443332   23 789999998873                   45788888887754433    3


Q ss_pred             hhccc-CcCeeeCcCCcccccCch----hhhCC-CCCCEEEccCCcCcCC----CCCCC----CCCCeEeccCCcccccC
Q 044683          130 LGNLL-ALEDIMMPNNNLQGPIPI----EFCQL-ELLTILDLSNNTIFGT----LPSCF----RTSSFVKKQDRRTVGKP  195 (247)
Q Consensus       130 ~~~~~-~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~----~~~~~----~~~~~L~l~~n~~~~~~  195 (247)
                      +...+ +|++|++++|.+++..+.    .+..+ ++|++|++++|.+++.    ++..+    .....|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34444 788888888888765543    33444 5888888888888753    22222    13348888888877643


Q ss_pred             CCcceeeeecchhcC--CCceEeccCCeeeec-------CCccccCCCchhhhh
Q 044683          196 CGSLGLDILPHLFRR--RPRRLAVEGFDLVLE-------LPQIVCGLPTCFALG  240 (247)
Q Consensus       196 ~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~l~  240 (247)
                      +..     ++..+..  +|+.|++++|.+.+.       ++..+..+++|+.++
T Consensus       242 ~~~-----l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld  290 (362)
T 3goz_A          242 LEN-----LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD  290 (362)
T ss_dssp             HHH-----HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred             HHH-----HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence            321     1222233  788888888874432       233455666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.4e-20  Score=165.20  Aligned_cols=199  Identities=27%  Similarity=0.279  Sum_probs=108.5

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.++. +|.   .+++|++|++++|.++ .+|.    .+++|++|++++|.++. +|..   +++|++|+
T Consensus        81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~  147 (622)
T 3g06_A           81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS  147 (622)
T ss_dssp             TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence            345555555555542 332   3455555555555555 4444    14455666666665552 3332   36777777


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCC----------ccEEEccCCcCCCCCchhh-----------------hccc
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNS----------LQGLYLSDNRLFGRIPRWL-----------------GNLL  134 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------l~~l~l~~n~~~~~~~~~~-----------------~~~~  134 (247)
                      +++|.++ .+|.    ..++|+.|++++|.          ++.|++++|.+++ +|..+                 ..++
T Consensus       148 Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~  221 (622)
T 3g06_A          148 VSDNQLA-SLPA----LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPS  221 (622)
T ss_dssp             CCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred             CcCCcCC-CcCC----ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCC
Confidence            7777776 4543    23455566555542          3355555555553 22211                 0124


Q ss_pred             CcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CC
Q 044683          135 ALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RP  212 (247)
Q Consensus       135 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L  212 (247)
                      +|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|..+.....|++++|.++ .         +|.++..  +|
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~---------lp~~l~~l~~L  286 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-R---------LPESLIHLSSE  286 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-S---------CCGGGGGSCTT
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-c---------CCHHHhhcccc
Confidence            45555555555553 23   23455555555555555 23333333445555555555 2         5556666  99


Q ss_pred             ceEeccCCeeeecCCccccCCC
Q 044683          213 RRLAVEGFDLVLELPQIVCGLP  234 (247)
Q Consensus       213 ~~L~l~~n~l~~~~~~~~~~l~  234 (247)
                      +.|++++|.+++..|..+..++
T Consensus       287 ~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHHhcc
Confidence            9999999999988877665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.3e-20  Score=144.03  Aligned_cols=176  Identities=22%  Similarity=0.236  Sum_probs=141.7

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.++.+++.++ .+|..+  .+++++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56788888887 445444  358999999999998 67776666689999999999999966666788999999999999


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD  164 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  164 (247)
                      |.++ .++...+..+++|+.+++++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQ----------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCc----------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            9998 777776666888887776666554          34456678899999999999999976667788999999999


Q ss_pred             ccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc
Q 044683          165 LSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL  199 (247)
Q Consensus       165 l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~  199 (247)
                      +++|.+.+..+    ....|+++.|.++|.+|.++
T Consensus       155 l~~N~~~~~~~----~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          155 LHDNPWDCTCP----GIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             CCSCCBCCCTT----TTHHHHHHHHHCTTTBBCTT
T ss_pred             ecCCCeecCCC----CHHHHHHHHHhCCceeeccC
Confidence            99998875543    34578899999999877543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=8.6e-21  Score=164.84  Aligned_cols=186  Identities=26%  Similarity=0.313  Sum_probs=144.5

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++ .+| .   .+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            68999999999986 666553  78999999999998 888 2   26799999999999985 666 544  8999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      ++|.++ .+|.    .+++|+.|++++|.++          + +|.   .+++|++|++++|.+++ +|. +.  ++|+.
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~----------~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~  184 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLT----------M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA  184 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCS----------C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccC----------c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence            999998 5776    3677777776666554          2 343   46789999999999985 565 55  89999


Q ss_pred             EEccCCcCcCCCCCCCCCC-------CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCC
Q 044683          163 LDLSNNTIFGTLPSCFRTS-------SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGL  233 (247)
Q Consensus       163 L~l~~n~l~~~~~~~~~~~-------~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l  233 (247)
                      |++++|.|+ .+|......       ..|++++|.++.          +|.++..  +|+.|++++|.+++.+|..++.+
T Consensus       185 L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~----------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH----------IPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             EECCSSCCS-SCCCCC--------CCEEEECCSSCCCC----------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             EECcCCCCC-chhhHHHhhhcccccceEEecCCCccee----------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            999999999 555522345       689999999984          3343444  89999999999999888877665


Q ss_pred             C
Q 044683          234 P  234 (247)
Q Consensus       234 ~  234 (247)
                      .
T Consensus       254 ~  254 (571)
T 3cvr_A          254 T  254 (571)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=7.2e-20  Score=148.18  Aligned_cols=169  Identities=22%  Similarity=0.306  Sum_probs=132.7

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.+++..+  +..+++|++|++++|.++ .++ .+.. +++|++|++++|.++. ++. +..+++|++|
T Consensus        62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIKTLDLTSTQITD-VTP-LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence            4789999999999986544  899999999999999998 555 4444 8999999999999985 443 8899999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.++ .++.  +..+++|+.|++++|.++          + ++. +..+++|++|++++|.+++. +. +..+++|
T Consensus       135 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~----------~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L  197 (308)
T 1h6u_A          135 YLDLNQIT-NISP--LAGLTNLQYLSIGNAQVS----------D-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNL  197 (308)
T ss_dssp             ECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC----------C-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred             ECCCCccC-cCcc--ccCCCCccEEEccCCcCC----------C-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCC
Confidence            99999998 5655  445888887777777654          2 233 77888899999999988854 32 7788899


Q ss_pred             CEEEccCCcCcCCCCC-CCCCCCeEeccCCcccc
Q 044683          161 TILDLSNNTIFGTLPS-CFRTSSFVKKQDRRTVG  193 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~-~~~~~~~L~l~~n~~~~  193 (247)
                      ++|++++|.+++..+- .+.....|++++|++++
T Consensus       198 ~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          198 IEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             CEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            9999999998855431 11233388999998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=3.8e-22  Score=169.89  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=41.3

Q ss_pred             CcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCC--------CCCCCeEeccCCcccccCCCcceee
Q 044683          135 ALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSC--------FRTSSFVKKQDRRTVGKPCGSLGLD  202 (247)
Q Consensus       135 ~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~l~~n~~~~~~~~~~~l~  202 (247)
                      +|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..        ......|++++|.+++...     .
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~-----~  388 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC-----S  388 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----H
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH-----H
Confidence            455555555554432    2334444555555555555554321111        1122255555555543100     0


Q ss_pred             eecchhcC--CCceEeccCCeeeec
Q 044683          203 ILPHLFRR--RPRRLAVEGFDLVLE  225 (247)
Q Consensus       203 l~p~~~~~--~L~~L~l~~n~l~~~  225 (247)
                      .+|.++..  +|++|++++|++++.
T Consensus       389 ~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          389 SLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHhCCCccEEECCCCCCCHH
Confidence            13444443  778888888877653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1.2e-20  Score=155.39  Aligned_cols=186  Identities=18%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccE-EEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH-LNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++++|++++|.|+...+.+|.++++|++|++++|.+.+.+|...+..++++++ +.+..|+++...|.+|..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            357888888888886555678888888888888888765677766666777665 5566677876667778888888888


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCC----------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcC-
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNN----------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN-  143 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n----------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~-  143 (247)
                      ++++|.+. .++...+....++..+++.++                .++.+++++|+++. ++.......+++.+++.+ 
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence            88888887 555544433455666665432                23356677777663 344344455667777654 


Q ss_pred             CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCC
Q 044683          144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDR  189 (247)
Q Consensus       144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n  189 (247)
                      |.++...+++|..+++|++||+++|+++..++..+.....|...++
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  233 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence            5555333355667777777777777777555555555555554444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.5e-22  Score=172.32  Aligned_cols=238  Identities=19%  Similarity=0.107  Sum_probs=125.6

Q ss_pred             CCcEEEccCCcccc----ccCccccCCCCCcEEEccCCceeecCCchhhhh----cccccEEEccCCccccCC----hHh
Q 044683            3 SLKVLDASSNQLTG----NISPNLCELVLLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGSI----PSS   70 (247)
Q Consensus         3 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~----~~~   70 (247)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...    .++|++|++++|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46666666666663    335556666677777777766654333333322    234666666666665422    444


Q ss_pred             hhcCCCCCEEeccCCcccccCchhHh----hcCCCccEEEccCCC------------------ccEEEccCCcCCCCCch
Q 044683           71 FFDMKMLKSLDISHNQLTGEIPERMA----TGCFSLEILALSNNS------------------LQGLYLSDNRLFGRIPR  128 (247)
Q Consensus        71 ~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~l~l~~n~------------------l~~l~l~~n~~~~~~~~  128 (247)
                      +..+++|++|++++|.+.+..+..+.    ...++|+.|++++|.                  ++.+++++|.+++....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            45566666777666666522222221    123466666666552                  33566666655432211


Q ss_pred             -----hhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCCC--------CCCCeEeccCCcc
Q 044683          129 -----WLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSCF--------RTSSFVKKQDRRT  191 (247)
Q Consensus       129 -----~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~l~~n~~  191 (247)
                           .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+        .....|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence                 112355666666666666532    34555556666666666666643211111        1233666666665


Q ss_pred             cccCC----Cc------c-eeee------------ecchhc--C-CCceEeccCCeeee----cCCccccCCCchhhhh
Q 044683          192 VGKPC----GS------L-GLDI------------LPHLFR--R-RPRRLAVEGFDLVL----ELPQIVCGLPTCFALG  240 (247)
Q Consensus       192 ~~~~~----~~------~-~l~l------------~p~~~~--~-~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~  240 (247)
                      ++...    ..      + .+++            +..++.  . +|++|++++|++++    .+|..+..+++|+.++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence            54311    00      0 2222            122222  2 77777777777775    5666666677776664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=4.6e-20  Score=142.23  Aligned_cols=152  Identities=25%  Similarity=0.367  Sum_probs=95.9

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.++++++.++ .+|..+.  +.++.|++++|.++ .++...+..+++|++|++++|.++...|.+|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            35666666666 3444443  46677777777776 44443334466777777777777666666677777777777777


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD  164 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  164 (247)
                      |.++ .+|...+..+++|+.|++++|.+          ++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           90 NKIT-ELPKSLFEGLFSLQLLLLNANKI----------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCC-ccCHhHccCCCCCCEEECCCCCC----------CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            7776 66666555566666554444443          334455666667777777777777655555666667777777


Q ss_pred             ccCCcCc
Q 044683          165 LSNNTIF  171 (247)
Q Consensus       165 l~~n~l~  171 (247)
                      +++|.+.
T Consensus       159 L~~N~~~  165 (220)
T 2v9t_B          159 LAQNPFI  165 (220)
T ss_dssp             CCSSCEE
T ss_pred             eCCCCcC
Confidence            7777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=9.4e-20  Score=140.49  Aligned_cols=153  Identities=21%  Similarity=0.227  Sum_probs=85.8

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+..++..+++|++|++++|.++...+.+|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            45666666665 3444332  23456666666666333444344466666666666666655555566666666666666


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD  164 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  164 (247)
                      |.++ .++...+..+++|+.|++++|.+          ++..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus        91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           91 NRLE-NVQHKMFKGLESLKTLMLRSNRI----------TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             SCCC-CCCGGGGTTCSSCCEEECTTSCC----------CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CccC-ccCHhHhcCCcCCCEEECCCCcC----------CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            6665 44444444455555444443333          333455555566666666666666655555666666666666


Q ss_pred             ccCCcCc
Q 044683          165 LSNNTIF  171 (247)
Q Consensus       165 l~~n~l~  171 (247)
                      +++|.++
T Consensus       160 L~~N~l~  166 (220)
T 2v70_A          160 LLANPFN  166 (220)
T ss_dssp             CCSCCEE
T ss_pred             ecCcCCc
Confidence            6666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=5.2e-20  Score=151.59  Aligned_cols=104  Identities=20%  Similarity=0.146  Sum_probs=82.6

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCCCE-Eec
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKMLKS-LDI   82 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l   82 (247)
                      ++++.++++++ .+|..+.  +++++|++++|+++ .+|+..+..+++|++|++++|.+...+| .+|..++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888888 5676653  58999999999998 8888777779999999999999854444 56788888776 556


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ  113 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  113 (247)
                      ..|.++ .++...+..+++|+.+++++|.++
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cCCccc-ccCchhhhhccccccccccccccc
Confidence            678888 777777777899998888887655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.5e-20  Score=153.83  Aligned_cols=196  Identities=15%  Similarity=0.136  Sum_probs=155.5

Q ss_pred             CCCCcEEEccCCccccc-cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-cccc-CChHhhhcCCCC
Q 044683            1 MTSLKVLDASSNQLTGN-ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNG-SIPSSFFDMKML   77 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L   77 (247)
                      +++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. +++|++|++++| .++. .++..+..+++|
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            46799999999998865 7778889999999999999998777777766 899999999999 6764 256678889999


Q ss_pred             CEEeccCC-ccccc-CchhHhhcCC-CccEEEccCC-----------------CccEEEccCCc-CCCCCchhhhcccCc
Q 044683           78 KSLDISHN-QLTGE-IPERMATGCF-SLEILALSNN-----------------SLQGLYLSDNR-LFGRIPRWLGNLLAL  136 (247)
Q Consensus        78 ~~L~l~~n-~~~~~-~~~~~~~~~~-~L~~l~l~~n-----------------~l~~l~l~~n~-~~~~~~~~~~~~~~L  136 (247)
                      ++|++++| .+++. ++.. +..++ +|+.|++++|                 +++.|++++|. +++..+..+..+++|
T Consensus       171 ~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            99999999 88743 3443 44588 9999999998                 34589999999 777778889999999


Q ss_pred             CeeeCcCCc-ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC-CCCeEeccCCcccccCCCcc
Q 044683          137 EDIMMPNNN-LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR-TSSFVKKQDRRTVGKPCGSL  199 (247)
Q Consensus       137 ~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~l~~n~~~~~~~~~~  199 (247)
                      ++|++++|. ++......+..+++|+.|++++| ++...-..+. ....|++++|.+++..|..+
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcc
Confidence            999999995 43222236788999999999999 5432222221 24478899999999877643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=4.4e-19  Score=137.59  Aligned_cols=154  Identities=21%  Similarity=0.173  Sum_probs=112.3

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA  106 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  106 (247)
                      .-+.++.+++.++ .+|..+.   ++|++|++++|.+++..|..|..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            3466788888777 7777653   57888888888888776777888888888888888887 77766666677777666


Q ss_pred             ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCe
Q 044683          107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSF  183 (247)
Q Consensus       107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~  183 (247)
                      +++|.++          +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..   ...
T Consensus        95 Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           95 LGTNQLT----------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             CCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCC----------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            6555554          334555677888888888888887 66777788888888888888888665555542   337


Q ss_pred             EeccCCcccccCC
Q 044683          184 VKKQDRRTVGKPC  196 (247)
Q Consensus       184 L~l~~n~~~~~~~  196 (247)
                      |++++|.+....+
T Consensus       164 L~l~~N~~~c~c~  176 (229)
T 3e6j_A          164 AYLFGNPWDCECR  176 (229)
T ss_dssp             EECTTSCBCTTBG
T ss_pred             EEeeCCCccCCcc
Confidence            8888888776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=2.2e-19  Score=136.02  Aligned_cols=151  Identities=15%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683           24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE  103 (247)
Q Consensus        24 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  103 (247)
                      .++++++|++++|.++ .+| .+.. +++|++|++++|.++ .. ..+..+++|++|++++|.+++..+..+ ..+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence            3445555555555554 444 2322 455555555555443 11 244555555555555555543223222 2244444


Q ss_pred             EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc-ccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCC
Q 044683          104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN-LQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTS  181 (247)
Q Consensus       104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~  181 (247)
                      .|++++|          .+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++..+ ..+...
T Consensus       116 ~L~Ls~n----------~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L  183 (197)
T 4ezg_A          116 LLDISHS----------AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKL  183 (197)
T ss_dssp             EEECCSS----------BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSC
T ss_pred             EEEecCC----------ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCC
Confidence            3333332          2223334445555555555555554 33 333 34555555555555555553211 111122


Q ss_pred             CeEeccCCccc
Q 044683          182 SFVKKQDRRTV  192 (247)
Q Consensus       182 ~~L~l~~n~~~  192 (247)
                      ..|++++|++.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            25555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=149.85  Aligned_cols=173  Identities=23%  Similarity=0.234  Sum_probs=125.2

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhh-hcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      +.++++++.++ .+|..+.  ..++.|++++|.++ .++...+. .+++|++|++++|.++...+.+|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56788888887 4565544  35788888888888 55555443 57888888888888887666778888888888888


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhh---hCCCCC
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEF---CQLELL  160 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L  160 (247)
                      +|.++ .++...+..+++|+.|++++|.++.+          .+..+..+++|++|++++|.+++..+..+   ..+++|
T Consensus        97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV----------DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             SSCCC-EECTTTTTTCTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCcCC-cCCHHHhCCCcCCCEEECCCCcccEE----------CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            88887 67766666677887777666666543          36677888888888888888885444444   568888


Q ss_pred             CEEEccCCcCcCCCCCCCCCC-----CeEeccCCccc
Q 044683          161 TILDLSNNTIFGTLPSCFRTS-----SFVKKQDRRTV  192 (247)
Q Consensus       161 ~~L~l~~n~l~~~~~~~~~~~-----~~L~l~~n~~~  192 (247)
                      +.|++++|.+++..+..+...     ..|++++|.+.
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            888888888885544444322     35788888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=2.9e-20  Score=155.06  Aligned_cols=195  Identities=18%  Similarity=0.167  Sum_probs=148.9

Q ss_pred             CCCCcEEEccCCc---cccccCccc-------cCCCCCcEEEccCCceee----cCCchhhhhcccccEEEccCCccccC
Q 044683            1 MTSLKVLDASSNQ---LTGNISPNL-------CELVLLRELYIDNNDLRG----HIPVEIGTYLLVFIHLNLSRNAFNGS   66 (247)
Q Consensus         1 l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~l~~n~l~~~   66 (247)
                      +++|++|++++|.   +++.+|..+       ..+++|++|++++|.+++    .++..+.. +++|++|++++|.++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHH
Confidence            4678999999964   444445444       688999999999999985    25555554 78999999999998754


Q ss_pred             ChHhhh----cC---------CCCCEEeccCCcccc-cCch--hHhhcCCCccEEEccCCC-------------------
Q 044683           67 IPSSFF----DM---------KMLKSLDISHNQLTG-EIPE--RMATGCFSLEILALSNNS-------------------  111 (247)
Q Consensus        67 ~~~~~~----~l---------~~L~~L~l~~n~~~~-~~~~--~~~~~~~~L~~l~l~~n~-------------------  111 (247)
                      .+..+.    .+         ++|++|++++|.+++ .++.  ..+..+++|+.|++++|.                   
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            444443    33         899999999999862 3332  233458899999998884                   


Q ss_pred             ccEEEccCCcCC----CCCchhhhcccCcCeeeCcCCccccc----CchhhhC--CCCCCEEEccCCcCcC----CCCCC
Q 044683          112 LQGLYLSDNRLF----GRIPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQ--LELLTILDLSNNTIFG----TLPSC  177 (247)
Q Consensus       112 l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~--~~~L~~L~l~~n~l~~----~~~~~  177 (247)
                      ++.|++++|.++    ..++..+..+++|++|++++|.+++.    ++..+..  +++|+.|++++|.+++    .+|..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            448899999986    56778889999999999999999865    4566644  8999999999999996    35544


Q ss_pred             C----CCCCeEeccCCcccccCC
Q 044683          178 F----RTSSFVKKQDRRTVGKPC  196 (247)
Q Consensus       178 ~----~~~~~L~l~~n~~~~~~~  196 (247)
                      +    .....|++++|.+++..+
T Consensus       298 l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHhcCCCceEEEccCCcCCcchh
Confidence            3    345599999999997654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.1e-18  Score=140.04  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=102.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|+.|++++|.+...  +.+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            4577777777777643  23667777777777777776 4444 33 37777777777777763 33 367777777777


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.++ .++.  +..+++|+.|++++|.++          +.  ..+..+++|++|++++|.+++..+  +..+++|+
T Consensus       119 L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~----------~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          119 LEHNGIS-DING--LVHLPQLESLYLGNNKIT----------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCCEEECCSSCCC----------CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             CCCCcCC-CChh--hcCCCCCCEEEccCCcCC----------cc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence            7777776 4432  334666666666555443          21  345566667777777776664332  56666777


Q ss_pred             EEEccCCcCcCCCCCCCC---CCCeEeccCCcccc
Q 044683          162 ILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVG  193 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~  193 (247)
                      +|++++|.+++. +. +.   ....|++++|+++.
T Consensus       182 ~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          182 NLYLSKNHISDL-RA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EEECCCCcCCCC-hh-hccCCCCCEEECcCCcccC
Confidence            777777766632 22 22   22266666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=7.5e-19  Score=141.10  Aligned_cols=181  Identities=18%  Similarity=0.208  Sum_probs=140.7

Q ss_pred             ccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683            9 ASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus         9 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      +..+.+++.  ..+..+++|+.|++++|.++ .++. +.. +++|++|++++|.++.. +. +..+++|++|++++|.++
T Consensus        31 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           31 LKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             TTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence            444444433  22456789999999999998 6654 444 89999999999999954 44 889999999999999998


Q ss_pred             ccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCC
Q 044683           89 GEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN  168 (247)
Q Consensus        89 ~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  168 (247)
                       .++.  +..+++|+.|++++|.++.           + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus       104 -~~~~--l~~l~~L~~L~L~~n~i~~-----------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          104 -DLSS--LKDLKKLKSLSLEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             -CGGG--GTTCTTCCEEECTTSCCCC-----------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             -CChh--hccCCCCCEEECCCCcCCC-----------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence             5554  4458888877777776653           2 3577899999999999999954  67889999999999999


Q ss_pred             cCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecC
Q 044683          169 TIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLEL  226 (247)
Q Consensus       169 ~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~  226 (247)
                      .+++..+  +.   ....|++++|.+++.          |. +..  +|+.|++++|+++...
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l----------~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISDL----------RA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC----------GG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCCC----------hh-hccCCCCCEEECcCCcccCCc
Confidence            9996654  33   334999999999863          21 333  8999999999998643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.5e-18  Score=152.16  Aligned_cols=168  Identities=24%  Similarity=0.331  Sum_probs=104.9

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|+.|++++|.+.. ++ .+..+++|+.|++++|.++ .++. +. .+++|+.|++++|.+.. ++ .+..+++|++|+
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            456777777777763 22 4667777777777777776 4444 33 37777777777777763 33 566777777777


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.+. .++.  +..+++|+.|++++|.++          +.  ..+..+++|+.|+|++|.+++..+  +..+++|+
T Consensus       116 Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~----------~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~  178 (605)
T 1m9s_A          116 LEHNGIS-DING--LVHLPQLESLYLGNNKIT----------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  178 (605)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCSEEECCSSCCC----------CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ecCCCCC-CCcc--ccCCCccCEEECCCCccC----------Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence            7777776 4432  334666666665555443          21  345666777777777777765433  66677777


Q ss_pred             EEEccCCcCcCCCCCC--CCCCCeEeccCCccccc
Q 044683          162 ILDLSNNTIFGTLPSC--FRTSSFVKKQDRRTVGK  194 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~--~~~~~~L~l~~n~~~~~  194 (247)
                      .|++++|.+++. +..  +..+..|++++|++++.
T Consensus       179 ~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          179 NLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             EEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             EEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            777777777643 221  12233677777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=134.40  Aligned_cols=154  Identities=22%  Similarity=0.250  Sum_probs=128.1

Q ss_pred             CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683           28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA  106 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  106 (247)
                      -+.+++++|.++ .+|..+.   ..+++|++++|.++...+ ..|..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence            368999999998 8898764   467999999999986644 45889999999999999998 67766666688887666


Q ss_pred             ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---Ce
Q 044683          107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SF  183 (247)
Q Consensus       107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~  183 (247)
                      +++|.+          ++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|...   ..
T Consensus        88 Ls~N~l----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           88 LTSNRL----------ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             CCSSCC----------CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCcc----------CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            655554          45567778999999999999999998888999999999999999999998888877633   39


Q ss_pred             EeccCCcccccCC
Q 044683          184 VKKQDRRTVGKPC  196 (247)
Q Consensus       184 L~l~~n~~~~~~~  196 (247)
                      |++++|.+.+..+
T Consensus       158 L~L~~N~l~c~c~  170 (220)
T 2v70_A          158 LNLLANPFNCNCY  170 (220)
T ss_dssp             EECCSCCEECSGG
T ss_pred             EEecCcCCcCCCc
Confidence            9999999987654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.9e-18  Score=132.94  Aligned_cols=155  Identities=23%  Similarity=0.249  Sum_probs=129.1

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      -+.++.+++.++ .+|..+.  +++++|++++|.+++..|..+ ..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            357888888888 5565554  789999999999994445444 448999999999999986666778999999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL  163 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  163 (247)
                      +|.++ .++...+..+++|+.|++++|.++           .+|..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-----------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCC-----------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCC-ccChhHhCcchhhCeEeccCCccc-----------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            99999 788777777888887777777665           457778899999999999999997666788999999999


Q ss_pred             EccCCcCcCCC
Q 044683          164 DLSNNTIFGTL  174 (247)
Q Consensus       164 ~l~~n~l~~~~  174 (247)
                      ++++|.+....
T Consensus       165 ~l~~N~~~c~c  175 (229)
T 3e6j_A          165 YLFGNPWDCEC  175 (229)
T ss_dssp             ECTTSCBCTTB
T ss_pred             EeeCCCccCCc
Confidence            99999998543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=5.9e-19  Score=154.65  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=147.1

Q ss_pred             EEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCc
Q 044683            7 LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ   86 (247)
Q Consensus         7 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   86 (247)
                      +.++.+.+.+..+  +..+..|+.|++++|.+. .++ .+.. +++|+.|++++|.++.. +. +..+++|+.|++++|.
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC
Confidence            3455555554433  456889999999999998 676 3444 89999999999999854 43 8899999999999999


Q ss_pred             ccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEcc
Q 044683           87 LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS  166 (247)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  166 (247)
                      +. .++.  +..+++|+.|++++|.++.           + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+++
T Consensus        99 l~-~l~~--l~~l~~L~~L~Ls~N~l~~-----------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           99 IK-DLSS--LKDLKKLKSLSLEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             CC-CCTT--STTCTTCCEEECTTSCCCC-----------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             CC-CChh--hccCCCCCEEEecCCCCCC-----------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            98 5652  4457888877777766552           2 3478899999999999999954  678899999999999


Q ss_pred             CCcCcCCCCC-CCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCC
Q 044683          167 NNTIFGTLPS-CFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLP  234 (247)
Q Consensus       167 ~n~l~~~~~~-~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~  234 (247)
                      +|.+++..|- .+..+..|++++|.+++. +          .+..  +|+.|++++|.+++.....+..+.
T Consensus       162 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~----------~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~  221 (605)
T 1m9s_A          162 DNQISDIVPLAGLTKLQNLYLSKNHISDL-R----------ALAGLKNLDVLELFSQECLNKPINHQSNLV  221 (605)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCBC-G----------GGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred             CCcCCCchhhccCCCCCEEECcCCCCCCC-h----------HHccCCCCCEEEccCCcCcCCcccccccEE
Confidence            9999976661 112344999999999863 2          1333  899999999999876544444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4.1e-18  Score=131.28  Aligned_cols=151  Identities=20%  Similarity=0.268  Sum_probs=126.1

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS  108 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  108 (247)
                      +.++++++.++ .+|..+.   +++++|++++|.++...+..|..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence            67999999998 8998764   58999999999999777778999999999999999998 5544455668888877777


Q ss_pred             CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEe
Q 044683          109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVK  185 (247)
Q Consensus       109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~  185 (247)
                      +|.++          ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..   ...|+
T Consensus        89 ~N~l~----------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           89 GNKIT----------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             SSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCcCC----------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            66665          334556788999999999999999888889999999999999999999777776753   33999


Q ss_pred             ccCCccccc
Q 044683          186 KQDRRTVGK  194 (247)
Q Consensus       186 l~~n~~~~~  194 (247)
                      +++|.+...
T Consensus       159 L~~N~~~c~  167 (220)
T 2v9t_B          159 LAQNPFICD  167 (220)
T ss_dssp             CCSSCEECS
T ss_pred             eCCCCcCCC
Confidence            999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=8.8e-19  Score=144.85  Aligned_cols=158  Identities=22%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             CCCcEEEccCCccccccCcccc-CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +.++.|++++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            3578999999999987777787 8999999999999999 5555544559999999999999997777789999999999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhh---hcccCcCeeeCcCCcccccCchhhhCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL---GNLLALEDIMMPNNNLQGPIPIEFCQL  157 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~~  157 (247)
                      ++++|.++ .++...+..+++|+.|++++|.++.          ..+..+   ..+++|++|++++|.+++..+..+..+
T Consensus       118 ~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~----------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR----------FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCS----------CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             ECCCCccc-EECHHHhCCcccCCEEECCCCcCCe----------eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence            99999998 6665566678888877777776653          223333   568899999999999996666778888


Q ss_pred             CC--CCEEEccCCcCc
Q 044683          158 EL--LTILDLSNNTIF  171 (247)
Q Consensus       158 ~~--L~~L~l~~n~l~  171 (247)
                      +.  ++.|++++|.+.
T Consensus       187 ~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          187 PAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHTTEECCSSCEE
T ss_pred             cHhhcceEEecCCCcc
Confidence            76  488999999876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1.1e-18  Score=138.01  Aligned_cols=164  Identities=22%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.++++++.+++..  .+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++. +. +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCC-hh-hccCCCCCEEECC
Confidence            344566677776433  4667778888888888877 666 3443 77888888888887743 33 7778888888888


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL  163 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  163 (247)
                      +|.++ .++...  . ++|+.|++++|.+          ++ + ..+..+++|++|++++|++++. + .+..+++|++|
T Consensus        94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l----------~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L  155 (263)
T 1xeu_A           94 RNRLK-NLNGIP--S-ACLSRLFLDNNEL----------RD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL  155 (263)
T ss_dssp             SSCCS-CCTTCC--C-SSCCEEECCSSCC----------SB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred             CCccC-CcCccc--c-CcccEEEccCCcc----------CC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence            88877 555421  1 4555444444433          32 2 2466777777777777777743 3 56777777777


Q ss_pred             EccCCcCcCCCCCCCC---CCCeEeccCCccccc
Q 044683          164 DLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGK  194 (247)
Q Consensus       164 ~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~  194 (247)
                      ++++|.+++.  ..+.   ....|++++|.+++.
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            7777777754  2232   233777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=1.8e-19  Score=161.31  Aligned_cols=136  Identities=24%  Similarity=0.308  Sum_probs=90.9

Q ss_pred             hhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc
Q 044683           48 TYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP  127 (247)
Q Consensus        48 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~  127 (247)
                      ..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|.++           .+|
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-----------~lp  286 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-----------SLP  286 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-----------SCC
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-----------ccC
Confidence            33677777777777776 55666667777777777777777 6776553 3666665555555443           446


Q ss_pred             hhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC----eEeccCCcccccCCCc
Q 044683          128 RWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS----FVKKQDRRTVGKPCGS  198 (247)
Q Consensus       128 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~L~l~~n~~~~~~~~~  198 (247)
                      ..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+....    .+++++|.++|.+|..
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            66777777777777777776 5566677777777777777777766665553222    4667777777766653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.5e-17  Score=131.59  Aligned_cols=149  Identities=19%  Similarity=0.317  Sum_probs=122.7

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++. +.. ++|++|
T Consensus        40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEE
T ss_pred             cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCCCccCC-cCc-ccc-CcccEE
Confidence            3679999999999984 44 7889999999999999998 6666 44 48999999999999985 444 333 899999


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL  160 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  160 (247)
                      ++++|.++ .++.  +..+++|+.|++++|.++.           ++ .+..+++|++|++++|.+++.  ..+..+++|
T Consensus       112 ~L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~-----------~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L  174 (263)
T 1xeu_A          112 FLDNNELR-DTDS--LIHLKNLEILSIRNNKLKS-----------IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV  174 (263)
T ss_dssp             ECCSSCCS-BSGG--GTTCTTCCEEECTTSCCCB-----------CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred             EccCCccC-CChh--hcCcccccEEECCCCcCCC-----------Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence            99999998 5653  4458888877777776653           23 578899999999999999965  678899999


Q ss_pred             CEEEccCCcCcCCC
Q 044683          161 TILDLSNNTIFGTL  174 (247)
Q Consensus       161 ~~L~l~~n~l~~~~  174 (247)
                      +.|++++|.+++..
T Consensus       175 ~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          175 NWIDLTGQKCVNEP  188 (263)
T ss_dssp             CEEEEEEEEEECCC
T ss_pred             CEEeCCCCcccCCc
Confidence            99999999998553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.1e-17  Score=124.17  Aligned_cols=147  Identities=14%  Similarity=0.082  Sum_probs=89.6

Q ss_pred             cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683           50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW  129 (247)
Q Consensus        50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~  129 (247)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ . +..+++|+.|++++|.+          ++..+..
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l----------~~~~~~~  107 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDV----------TSDKIPN  107 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTC----------BGGGSCC
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCcc----------CcccChh
Confidence            667777777777776 445 4667777777777777665 333 2 33466666555444433          3344556


Q ss_pred             hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCc-CcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeec
Q 044683          130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT-IFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILP  205 (247)
Q Consensus       130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p  205 (247)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+.   ....|++++|.+++..+         
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~---------  176 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRG---------  176 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTT---------
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHH---------
Confidence            6677777777777777776566677777777777777776 54 333 222   23377777777765221         


Q ss_pred             chhcC--CCceEeccCCeeee
Q 044683          206 HLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       206 ~~~~~--~L~~L~l~~n~l~~  224 (247)
                        +..  +|+.|++++|++.+
T Consensus       177 --l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          177 --IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             --GGGCSSCCEEEECBC----
T ss_pred             --hccCCCCCEEEeeCcccCC
Confidence              222  67777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=2.4e-17  Score=143.20  Aligned_cols=161  Identities=25%  Similarity=0.323  Sum_probs=123.5

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.++ .+|   ..+++|++|++++|.++ .+|. +..   +|++|++++|.+++ +|.   .+++|++|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            56999999999999 566   45789999999999999 5888 543   89999999999995 665   689999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC-
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL-  160 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L-  160 (247)
                      +++|.++ .+|.    .+++|+.|++++|.++          + +|. +.  ++|++|++++|.++ .+|. +..  +| 
T Consensus       147 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~----------~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~  203 (571)
T 3cvr_A          147 ADNNQLT-MLPE----LPTSLEVLSVRNNQLT----------F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNH  203 (571)
T ss_dssp             CCSSCCS-CCCC----CCTTCCEEECCSSCCS----------C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC------
T ss_pred             CCCCccC-cCCC----cCCCcCEEECCCCCCC----------C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhh
Confidence            9999998 5776    3667776666666554          3 444 44  78999999999998 5565 443  66 


Q ss_pred             ------CEEEccCCcCcCCCCCCC-CC--CCeEeccCCcccccCCCcc
Q 044683          161 ------TILDLSNNTIFGTLPSCF-RT--SSFVKKQDRRTVGKPCGSL  199 (247)
Q Consensus       161 ------~~L~l~~n~l~~~~~~~~-~~--~~~L~l~~n~~~~~~~~~~  199 (247)
                            +.|++++|.|+ .+|..+ ..  ...|++++|.+++.+|..+
T Consensus       204 ~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             ----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             cccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence                  99999999998 455533 32  2389999999988765543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.7e-16  Score=117.02  Aligned_cols=134  Identities=24%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             CCCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683           25 LVLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE  103 (247)
Q Consensus        25 l~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  103 (247)
                      .+.+++|++++|.++ +.+|..+.. +++|++|++++|.++..  ..+..+++|++|++++|.+.+.+|... ..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCC
Confidence            478899999999987 577777554 88999999999998854  678889999999999999984455544 3488888


Q ss_pred             EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc---hhhhCCCCCCEEEccCCcCc
Q 044683          104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP---IEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~  171 (247)
                      .|++++|.++.+         ..+..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDI---------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSS---------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcc---------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            777776665421         112678889999999999999996544   47889999999999999987

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=7.3e-17  Score=118.95  Aligned_cols=136  Identities=21%  Similarity=0.151  Sum_probs=111.2

Q ss_pred             CCCcEEEccCCccc-cccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLT-GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+.. +++|++|++++|.++...|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            57999999999998 677888899999999999999998 55 44544 8999999999999997688888889999999


Q ss_pred             eccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCc---hhhhcccCcCeeeCcCCcccccCch
Q 044683           81 DISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP---RWLGNLLALEDIMMPNNNLQGPIPI  152 (247)
Q Consensus        81 ~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~  152 (247)
                      ++++|.++ .++. ..+..+++|+.+++++|.++          +..+   ..+..+++|++|++++|.+. ..|+
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~----------~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT----------NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG----------TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc----------chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999998 6553 34455788887776666554          3333   47888999999999999987 4443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.6e-18  Score=152.90  Aligned_cols=154  Identities=23%  Similarity=0.331  Sum_probs=118.7

Q ss_pred             ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHh
Q 044683           17 NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA   96 (247)
Q Consensus        17 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~   96 (247)
                      ..+..+..+..|+.|++++|.+. .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            34777889999999999999998 99999886 999999999999999 78999999999999999999999 8988765


Q ss_pred             hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCC-CCEEEccCCcCcCCCC
Q 044683           97 TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL-LTILDLSNNTIFGTLP  175 (247)
Q Consensus        97 ~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~  175 (247)
                      . +++|+.|++++|.++           .+|..++.+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|
T Consensus       291 ~-l~~L~~L~L~~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          291 S-CFQLKYFYFFDNMVT-----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             G-GTTCSEEECCSSCCC-----------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             C-CCCCCEEECCCCCCC-----------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            4 888887777766654           46777999999999999999999888877754322 2347899999998888


Q ss_pred             CCCCCCCeEeccCC
Q 044683          176 SCFRTSSFVKKQDR  189 (247)
Q Consensus       176 ~~~~~~~~L~l~~n  189 (247)
                      ..+.   .++++.|
T Consensus       359 ~~l~---~l~l~~n  369 (727)
T 4b8c_D          359 HERR---FIEINTD  369 (727)
T ss_dssp             CC------------
T ss_pred             cccc---eeEeecc
Confidence            7554   3455555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1e-19  Score=158.53  Aligned_cols=197  Identities=15%  Similarity=0.111  Sum_probs=138.7

Q ss_pred             cCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-------------cccCChHhhhcCCCCCEEe-ccCCccc
Q 044683           23 CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-------------FNGSIPSSFFDMKMLKSLD-ISHNQLT   88 (247)
Q Consensus        23 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~   88 (247)
                      ..++.|+.|++++|.++ .+|..++. +++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45678888888888887 88888876 7888888887664             3445667777777888777 5555544


Q ss_pred             ccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCC
Q 044683           89 GEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN  168 (247)
Q Consensus        89 ~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  168 (247)
                       .++...... ..+..  +....++.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus       424 -~L~~l~l~~-n~i~~--l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          424 -DLRSKFLLE-NSVLK--MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             -HHHHHHHHH-HHHHH--HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             -hhhhhhhhc-ccccc--cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence             333211100 00000  000124466666666665 565 899999999999999999 78899999999999999999


Q ss_pred             cCcCCCCCCCC---CCCeEeccCCcccccC-CCcceeeeecchhcC--CCceEeccCCeeeecCCcc---ccCCCchhhh
Q 044683          169 TIFGTLPSCFR---TSSFVKKQDRRTVGKP-CGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQI---VCGLPTCFAL  239 (247)
Q Consensus       169 ~l~~~~~~~~~---~~~~L~l~~n~~~~~~-~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~---~~~l~~L~~l  239 (247)
                      .+++ +| .+.   ....|++++|.+++.. |.         .+..  +|+.|++++|.+++.+|..   +..+++|+.|
T Consensus       497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~---------~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ---------PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG---------GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH---------HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            9996 55 454   2339999999999864 43         3455  9999999999999765432   2346666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.2e-17  Score=123.65  Aligned_cols=130  Identities=23%  Similarity=0.295  Sum_probs=83.0

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      +.++++++.++ .+|..++.   ++++|++++|.++...+. .+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEEC
Confidence            56667777665 66665532   667777777776644332 3666777777777777776 333333344666665555


Q ss_pred             cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCC
Q 044683          108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT  173 (247)
Q Consensus       108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  173 (247)
                      ++|.++.+          .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus        86 s~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           86 GENKIKEI----------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCCCCEE----------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCcCCcc----------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            55554432          344566677777777777777776677777777777888877777644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=1.4e-16  Score=115.06  Aligned_cols=129  Identities=22%  Similarity=0.243  Sum_probs=86.8

Q ss_pred             CCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccE
Q 044683           26 VLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEI  104 (247)
Q Consensus        26 ~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  104 (247)
                      ++++.|++++|.++ +.+|..+.. +++|++|++++|.++..  ..+..+++|++|++++|.+++.+|... ..+++|+.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCE
Confidence            56777777777776 566665444 67777777777777644  556777777777777777774355433 33666666


Q ss_pred             EEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc---hhhhCCCCCCEEEccC
Q 044683          105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP---IEFCQLELLTILDLSN  167 (247)
Q Consensus       105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~  167 (247)
                      +++++|.++.+         ..+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~---------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDL---------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSH---------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCCh---------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            66555554421         123567778888888888888886554   4677888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=4e-19  Score=154.77  Aligned_cols=177  Identities=19%  Similarity=0.157  Sum_probs=134.8

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCc-------------eeecCCchhhhhcccccEEE-ccCCccccCC
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-------------LRGHIPVEIGTYLLVFIHLN-LSRNAFNGSI   67 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~   67 (247)
                      ++|+.|++++|.++ .+|..+..+++|+.|++++|.             ..+..|..+.. +++|+.|+ ++.|.+.. +
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~~~-L  425 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLDD-L  425 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHHHH-H
T ss_pred             ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhcccch-h
Confidence            56888999999998 789999999999999997764             33344444444 78888888 56554431 1


Q ss_pred             hH------hhhc--CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCee
Q 044683           68 PS------SFFD--MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDI  139 (247)
Q Consensus        68 ~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  139 (247)
                      +.      .+..  ...|+.|++++|.++ .+|.  +..+++|+.|++++|.++           .+|..++.+++|++|
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-----------~lp~~~~~l~~L~~L  491 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-----------ALPPALAALRCLEVL  491 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-----------CCCGGGGGCTTCCEE
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-----------ccchhhhcCCCCCEE
Confidence            11      1111  235999999999998 6886  445888887766666554           568889999999999


Q ss_pred             eCcCCcccccCchhhhCCCCCCEEEccCCcCcCCC-CCCCCC---CCeEeccCCcccccCCC
Q 044683          140 MMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL-PSCFRT---SSFVKKQDRRTVGKPCG  197 (247)
Q Consensus       140 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~---~~~L~l~~n~~~~~~~~  197 (247)
                      ++++|.+++ +| .+..+++|++|++++|.+++.. |..+..   ...|++++|.+++.++.
T Consensus       492 ~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          492 QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999995 56 8899999999999999999775 776653   33999999999987654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.4e-16  Score=120.00  Aligned_cols=132  Identities=22%  Similarity=0.346  Sum_probs=95.5

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.++++++.++ .+|..+..  .+++|++++|.+++..+..++..+++|++|++++|.+++..|.+|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57888888886 55655543  7888888888887333333344588888888888888877788888888888888888


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI  150 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  150 (247)
                      |.++ .++...+..+++|+.|++++|.++          +..|..+..+++|++|++++|.+++..
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIK-EISNKMFLGLHQLKTLNLYDNQIS----------CVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCC----------EECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCC-ccCHHHhcCCCCCCEEECCCCcCC----------eeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            8887 555554555777776665555554          345677778888888888888887553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=4.6e-16  Score=117.32  Aligned_cols=127  Identities=24%  Similarity=0.325  Sum_probs=91.7

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS  108 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  108 (247)
                      +.++++++.++ .+|..++   +++++|++++|.++ .+|..|..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence            56788888877 7776653   47888888888887 56677888888888888888887 5665555567777655555


Q ss_pred             CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCc
Q 044683          109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      +|.++          +..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        87 ~N~l~----------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLR----------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCC----------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccC----------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55444          344566777778888888888887555556777888888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=8.4e-16  Score=114.21  Aligned_cols=131  Identities=23%  Similarity=0.253  Sum_probs=78.9

Q ss_pred             CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683           28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      .+.++++++.++ .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence            356666666666 6665442   46777777777776554555666677777777777766 555554444555555544


Q ss_pred             cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCC
Q 044683          108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT  173 (247)
Q Consensus       108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  173 (247)
                      ++|.++          +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        84 ~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           84 HENKLQ----------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcc----------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            444433          23344455666677777777766644444456666777777776666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=4.1e-16  Score=115.82  Aligned_cols=135  Identities=22%  Similarity=0.253  Sum_probs=109.9

Q ss_pred             ccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcC
Q 044683           20 PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGC   99 (247)
Q Consensus        20 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~   99 (247)
                      ..+..+.++++|++++|.++ .++. +....++|++|++++|.+++.  ..+..+++|++|++++|.++ .+|..++..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence            45677889999999999998 6754 555345999999999999854  57888999999999999998 7777766668


Q ss_pred             CCccEEEccCCCccEEEccCCcCCCCCch--hhhcccCcCeeeCcCCcccccCch----hhhCCCCCCEEEccCCcCc
Q 044683          100 FSLEILALSNNSLQGLYLSDNRLFGRIPR--WLGNLLALEDIMMPNNNLQGPIPI----EFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       100 ~~L~~l~l~~n~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~l~  171 (247)
                      ++|+.+++++|.++           .+|.  .+..+++|++|++++|.++ ..|.    .+..+++|+.||+++|.+.
T Consensus        88 ~~L~~L~L~~N~i~-----------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLV-----------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCC-----------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCC-----------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888777777664           3344  6788999999999999998 4455    4888999999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.6e-15  Score=113.21  Aligned_cols=128  Identities=27%  Similarity=0.342  Sum_probs=107.1

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.++++++.++ .+|..+.  +.+++|++++|.++ .+|..+.. +++|++|++++|.++...+.+|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57899999998 5666554  58999999999998 89976655 89999999999999987778899999999999999


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      |.++ .++...+..+++|+.|++++|.++          ...+..+..+++|+++++++|.+..
T Consensus        88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLR-CIPPRTFDGLKSLRLLSLHGNDIS----------VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCC-BCCTTTTTTCTTCCEEECCSSCCC----------BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccC-EeCHHHhCCCCCCCEEECCCCCCC----------eeChhhhhcCccccEEEeCCCCeec
Confidence            9999 677666667888887777776665          3345568889999999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.1e-15  Score=124.76  Aligned_cols=184  Identities=11%  Similarity=0.068  Sum_probs=120.0

Q ss_pred             CCchhhhh--------cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCC--
Q 044683           42 IPVEIGTY--------LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS--  111 (247)
Q Consensus        42 ~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--  111 (247)
                      +|...|.+        +++|+++++.. .++.+.+.+|..+++|+.++++.|.+. .++...|..+.++..+....+.  
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh
Confidence            44555555        66777777766 566555666777777777777777666 5666656555555544433310  


Q ss_pred             ------------------------------------------ccEEEccCCcCCCCCchhh-hcccCcCeeeCcCCcccc
Q 044683          112 ------------------------------------------LQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQG  148 (247)
Q Consensus       112 ------------------------------------------l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~  148 (247)
                                                                ++.+.+.++ +.......+ ..+++|+.+++.+|.++.
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~  240 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATT  240 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred             hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence                                                      111111111 000001111 137899999999999997


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CC-eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCee
Q 044683          149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SS-FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDL  222 (247)
Q Consensus       149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~-~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l  222 (247)
                      ..+.+|.++++|+.+++.+| ++...+.+|..   .. .+++.+ .++...+         .+|..  +|+.+++++|++
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~---------~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF---------GAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT---------TTTTTCTTEEEEEECSSCC
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch---------hhhhCCccCCEEEeCCCcc
Confidence            77788999999999999998 77667777763   33 677776 5543222         23455  899999999999


Q ss_pred             eecCCccccCCCchhhh
Q 044683          223 VLELPQIVCGLPTCFAL  239 (247)
Q Consensus       223 ~~~~~~~~~~l~~L~~l  239 (247)
                      +...+.+|.++++|+.+
T Consensus       310 ~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          310 TTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             CEECTTTTCTTCCCCEE
T ss_pred             CccchhhhcCCcchhhh
Confidence            98888899999998865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=8.2e-17  Score=141.07  Aligned_cols=101  Identities=19%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             hhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccC-----------CcCCCC
Q 044683           71 FFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSD-----------NRLFGR  125 (247)
Q Consensus        71 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~-----------n~~~~~  125 (247)
                      +..+++|++|++++|.+++.....+...+++|+.|++.++              .++.|++++           +.+++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            3344455555555555432222222334555666555422              345666662           334322


Q ss_pred             Cc-hhhhcccCcCeeeCcCCcccccCchhhhC-CCCCCEEEcc----CCcCc
Q 044683          126 IP-RWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLTILDLS----NNTIF  171 (247)
Q Consensus       126 ~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~n~l~  171 (247)
                      .. .....+++|++|+++.+.+++.....+.. +++|+.|+++    .|.++
T Consensus       369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence            11 12234566666666666665444444443 6666666664    44555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=5.2e-15  Score=109.89  Aligned_cols=133  Identities=22%  Similarity=0.277  Sum_probs=106.8

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      .+.++++++.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            467899999988 4554443  68999999999998 6776665568999999999999997666678899999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP  151 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  151 (247)
                      +|.++ .++...+..+++|+.+++++|.++          +..+..+..+++|+++++++|.+++..+
T Consensus        85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLK----------SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCS----------CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCcc-ccCHHHhhCCcccCEEECcCCcce----------EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99998 777766666888887776666654          3345556789999999999999986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=2.8e-16  Score=137.63  Aligned_cols=209  Identities=14%  Similarity=0.029  Sum_probs=105.5

Q ss_pred             CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccc-cCChHhhhcCCCCCEEeccC-----------Cc
Q 044683           19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN-GSIPSSFFDMKMLKSLDISH-----------NQ   86 (247)
Q Consensus        19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-----------n~   86 (247)
                      +..+..+++|++|++++|.+++.....+...+++|++|+++ +.+. ..++.....+++|++|++++           +.
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            33344455555555555554432222222335555555555 2222 12222224455566666652           33


Q ss_pred             ccccCchhHhhcCCCccEEEccCC---------------CccEEEcc----CCcCCCC-----CchhhhcccCcCeeeCc
Q 044683           87 LTGEIPERMATGCFSLEILALSNN---------------SLQGLYLS----DNRLFGR-----IPRWLGNLLALEDIMMP  142 (247)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~  142 (247)
                      +++.....+...+++|+.|++..+               +++.|+++    .|.+++.     ++..+..+++|++|+++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            332212222333556666665433               24455554    4455542     23335556777777776


Q ss_pred             CCc--ccccCchhhh-CCCCCCEEEccCCcCcCC-CC---CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCc
Q 044683          143 NNN--LQGPIPIEFC-QLELLTILDLSNNTIFGT-LP---SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPR  213 (247)
Q Consensus       143 ~n~--~~~~~~~~l~-~~~~L~~L~l~~n~l~~~-~~---~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~  213 (247)
                      .|.  +++.....+. .+++|+.|++++|.+++. ++   ........|++++|.+++..        ++..+..  +|+
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~~~~~l~~L~  516 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA--------IAAAVTKLPSLR  516 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH--------HHHHHHHCSSCC
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH--------HHHHHHhcCccC
Confidence            432  4433333333 477788888888877642 12   22233447888888876432        1222222  899


Q ss_pred             eEeccCCeeeecCCccc-cCCCch
Q 044683          214 RLAVEGFDLVLELPQIV-CGLPTC  236 (247)
Q Consensus       214 ~L~l~~n~l~~~~~~~~-~~l~~L  236 (247)
                      +|++++|++++.....+ ..++.+
T Consensus       517 ~L~ls~n~it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          517 YLWVQGYRASMTGQDLMQMARPYW  540 (592)
T ss_dssp             EEEEESCBCCTTCTTGGGGCCTTE
T ss_pred             eeECcCCcCCHHHHHHHHHhCCCc
Confidence            99999999886533333 344443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=2.5e-17  Score=124.78  Aligned_cols=151  Identities=25%  Similarity=0.270  Sum_probs=101.7

Q ss_pred             CCcEEEccCCccccccCc------cccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCC
Q 044683            3 SLKVLDASSNQLTGNISP------NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKM   76 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   76 (247)
                      .++.++++.+.+++..|.      .+..+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCc
Confidence            455566666666665555      7777888888888888887 566 4444 778888888888887 56666667778


Q ss_pred             CCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCch----
Q 044683           77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI----  152 (247)
Q Consensus        77 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----  152 (247)
                      |++|++++|.++ .+| . +..+++|+.+++++|.++.+.         ....+..+++|++|++++|.+++..|.    
T Consensus        95 L~~L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N~i~~~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  162 (198)
T 1ds9_A           95 LEELWISYNQIA-SLS-G-IEKLVNLRVLYMSNNKITNWG---------EIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             CSEEEEEEEECC-CHH-H-HHHHHHSSEEEESEEECCCHH---------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred             CCEEECcCCcCC-cCC-c-cccCCCCCEEECCCCcCCchh---------HHHHHhcCCCCCEEEecCCccccccccccch
Confidence            888888888887 455 2 333666766665555444210         113567778888888888887755443    


Q ss_pred             ------hhhCCCCCCEEEccCCcCc
Q 044683          153 ------EFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       153 ------~l~~~~~L~~L~l~~n~l~  171 (247)
                            .+..+++|+.||  +|.++
T Consensus       163 ~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          163 SEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHHHhCCCcEEEC--CcccC
Confidence                  366778888776  56555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=7.4e-15  Score=109.00  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             CCCCcEEEccCCccccccCccccCCC-CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++|++|++++|.++. ++. +..+. +|++|++++|.+++ + ..+.. +++|++|++++|.++...+..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3578999999999994 444 55554 99999999999984 4 44544 899999999999999655556689999999


Q ss_pred             EeccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCch----hhhcccCcCeeeCcCCccc
Q 044683           80 LDISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR----WLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        80 L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~  147 (247)
                      |++++|.+. .+|. ..+..+++|+.+++++|.++           .+|.    .+..+++|++|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-----------~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-----------NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-----------GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-----------CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999997 7776 23445888887777777665           2344    4888999999999999876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=1.7e-15  Score=132.65  Aligned_cols=167  Identities=17%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             CCCcEEEccCCccccccCcccc-CCCCCcEEEccCC-ceeecCCchhhhhcccccEEEccCCccccCChHhhh----cCC
Q 044683            2 TSLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF----DMK   75 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~   75 (247)
                      ++|++|++++|.+++..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.++...+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            4677777777777665555554 4677777777777 444222233333467777777777776644443333    455


Q ss_pred             CCCEEeccCCc--ccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCc------------------
Q 044683           76 MLKSLDISHNQ--LTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNR------------------  121 (247)
Q Consensus        76 ~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~------------------  121 (247)
                      +|++|++++|.  +.......+...+++|+.|++++|              .++.+++..+.                  
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            77777777765  211111122233677777777765              35566543331                  


Q ss_pred             --------CCC----CCchhhhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCC
Q 044683          122 --------LFG----RIPRWLGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNN  168 (247)
Q Consensus       122 --------~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n  168 (247)
                              +.+    .++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence                    111    12333345677888888887766432 233456777888877776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.6e-14  Score=104.18  Aligned_cols=113  Identities=22%  Similarity=0.162  Sum_probs=86.7

Q ss_pred             cccccEEEccCCccc-cCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCch
Q 044683           50 LLVFIHLNLSRNAFN-GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR  128 (247)
Q Consensus        50 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~  128 (247)
                      .+++++|++++|.++ +.+|..+..+++|++|++++|.++ .+  ..+..+++|+.+++++|          .+++.+|.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n----------~i~~~~~~   82 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDN----------RVSGGLEV   82 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSS----------CCCSCTHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCC----------cccchHHH
Confidence            467999999999998 667777888999999999999988 44  23344666665554444          44455777


Q ss_pred             hhhcccCcCeeeCcCCccccc-CchhhhCCCCCCEEEccCCcCcCCCC
Q 044683          129 WLGNLLALEDIMMPNNNLQGP-IPIEFCQLELLTILDLSNNTIFGTLP  175 (247)
Q Consensus       129 ~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~  175 (247)
                      .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus        83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            777889999999999998853 23778889999999999998885544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.53  E-value=1.2e-15  Score=126.40  Aligned_cols=165  Identities=18%  Similarity=0.132  Sum_probs=105.1

Q ss_pred             CCCcEEEccCCccccccCccccC-----CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhh----
Q 044683            2 TSLKVLDASSNQLTGNISPNLCE-----LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF----   72 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----   72 (247)
                      +.|+.|++++|.++......+..     .+.|++|++++|.+++.....+...+++|++|++++|.++......++    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            46788888888887654444333     268888888888887554555555567888888888888754444442    


Q ss_pred             -cCCCCCEEeccCCcccccCchhH---hhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683           73 -DMKMLKSLDISHNQLTGEIPERM---ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus        73 -~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                       ..++|++|++++|.+++.....+   ....++|+.|++++|.++....      ..++..+...++|++|++++|.+++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------ELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------HHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------HHHHHHHhcCCCcCeEECCCCCCCH
Confidence             35778888888888762111111   1235556655555554431100      0224455666788888888888874


Q ss_pred             c----CchhhhCCCCCCEEEccCCcCcC
Q 044683          149 P----IPIEFCQLELLTILDLSNNTIFG  172 (247)
Q Consensus       149 ~----~~~~l~~~~~L~~L~l~~n~l~~  172 (247)
                      .    +...+...++|++|++++|.|++
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            3    33455567888888888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.52  E-value=8.5e-15  Score=128.25  Aligned_cols=30  Identities=17%  Similarity=0.015  Sum_probs=17.6

Q ss_pred             CCceEeccCCeeeecCCc-cccCCCchhhhh
Q 044683          211 RPRRLAVEGFDLVLELPQ-IVCGLPTCFALG  240 (247)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~  240 (247)
                      +|++|++++|.+++.... ....+++|+.|.
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            788888888877544333 233455555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.8e-13  Score=101.00  Aligned_cols=106  Identities=25%  Similarity=0.271  Sum_probs=60.2

Q ss_pred             CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683           28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      .+.+++++|.++ .+|..+.   +++++|++++|.+++..|..|..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            355666666665 5555442   45666666666666555555666666666666666666 555555444555554444


Q ss_pred             cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683          108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus       108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      ++|.++          +..+..+..+++|++|++++|.++.
T Consensus        86 ~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLK----------SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCC----------CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccC----------EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            444433          2233445566666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=3.8e-13  Score=99.55  Aligned_cols=105  Identities=26%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS  108 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  108 (247)
                      +.++++++.++ .+|..+.   ++|++|++++|.+++..|..|..+++|++|++++|.++ .+|...+..+++|+.|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            66777777776 7777653   57778888888877666777777788888888888877 6676666557777766655


Q ss_pred             CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683          109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus       109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      +|.++          +..+..+..+++|++|++++|.+..
T Consensus        90 ~N~l~----------~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLK----------SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCC----------CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccc----------eeCHHHhccccCCCEEEeCCCCccc
Confidence            55544          2334456777788888888887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=4e-13  Score=99.07  Aligned_cols=104  Identities=22%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      .+++++++|.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456777777777 3555443  67777788877777 4443333347777778888777776555566777777788887


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCc
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSL  112 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l  112 (247)
                      +|.++ .++...+..+++|+.+++++|.+
T Consensus        87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence            77777 66665555566666655555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.9e-15  Score=113.38  Aligned_cols=137  Identities=26%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             ccCCCCCcEEEccCCceeecCCc------hhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhH
Q 044683           22 LCELVLLRELYIDNNDLRGHIPV------EIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM   95 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n~i~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   95 (247)
                      +.....++.++++.+.+.+.+|.      .+.. +++|++|++++|.++. +| .+..+++|++|++++|.++ .+|...
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            34455666666666666655554      6655 8899999999999885 56 7888899999999999988 777654


Q ss_pred             hhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc-hhhhCCCCCCEEEccCCcCcCCC
Q 044683           96 ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP-IEFCQLELLTILDLSNNTIFGTL  174 (247)
Q Consensus        96 ~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~  174 (247)
                      . .+++|+.|++++|.++          + +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..
T Consensus        90 ~-~~~~L~~L~L~~N~l~----------~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           90 A-VADTLEELWISYNQIA----------S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             H-HHHHCSEEEEEEEECC----------C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             h-cCCcCCEEECcCCcCC----------c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            3 3567776666665554          2 34 57788889999999998884322 46788889999999888887554


Q ss_pred             C
Q 044683          175 P  175 (247)
Q Consensus       175 ~  175 (247)
                      |
T Consensus       157 ~  157 (198)
T 1ds9_A          157 K  157 (198)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=6.5e-13  Score=98.32  Aligned_cols=103  Identities=19%  Similarity=0.300  Sum_probs=52.8

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      +.+++++|.++ .+|..+.  +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34555555554 3444332  45566666666665 33322222355666666666666543333445556666666666


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCc
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSL  112 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l  112 (247)
                      |.++ .+|...+..+++|+.+++++|.+
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence            6655 45544444455555444444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=6.5e-13  Score=108.21  Aligned_cols=166  Identities=12%  Similarity=0.114  Sum_probs=98.8

Q ss_pred             CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcc-----------------
Q 044683           25 LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL-----------------   87 (247)
Q Consensus        25 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-----------------   87 (247)
                      +++|+.+++.+ .++ .+++..|.++++|+++++.+|.+....+.+|..+.++..+....+..                 
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            66666666666 565 55666555566666666666666545555555555554444433110                 


Q ss_pred             ---------cccCchhHhhc---CCCccEEEccC--------------CCccEEEccCCcCCCCCchhhhcccCcCeeeC
Q 044683           88 ---------TGEIPERMATG---CFSLEILALSN--------------NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMM  141 (247)
Q Consensus        88 ---------~~~~~~~~~~~---~~~L~~l~l~~--------------n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  141 (247)
                               .+.++..++..   ..++..+.+.+              .+++.+++.+|+++...+.+|..+++|+.+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence                     00122222211   11222232222              24555555555555444667888888999999


Q ss_pred             cCCcccccCchhhhCCCCCC-EEEccCCcCcCCCCCCCCCCC---eEeccCCccccc
Q 044683          142 PNNNLQGPIPIEFCQLELLT-ILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTVGK  194 (247)
Q Consensus       142 ~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~  194 (247)
                      .+| ++...+.+|.++++|+ .+++.+ .++...+.+|....   .++++.|.++..
T Consensus       258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            887 6656678888898898 898888 67656677776433   788888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=8.8e-12  Score=104.14  Aligned_cols=212  Identities=13%  Similarity=0.109  Sum_probs=111.7

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      |+.+.+..+ ++.....+|.++ .|+.+.+.. .++ .++...|..+.+|+.+++..|.++.....+|. ..+|+.+.+.
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            444444433 333334444442 455555554 344 44444444455566666655555533333443 4555555555


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc----
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ----  147 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~----  147 (247)
                      .+ +. .++...|..+++|+.+.+..+            .++.+.+. +++......+|..+++|+.+.+.++.+.    
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence            33 44 455555555556666655443            23344442 2233233455666677777777666543    


Q ss_pred             -ccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC-C--eEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCee
Q 044683          148 -GPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS-S--FVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDL  222 (247)
Q Consensus       148 -~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l  222 (247)
                       ...+.+|.++++|+.+++.+ .++.....+|... +  .+.+..+ ++..         -+.+|.. +|+.+++++|.+
T Consensus       289 ~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I---------~~~aF~~~~L~~l~l~~n~~  357 (401)
T 4fdw_A          289 AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI---------NFSAFNNTGIKEVKVEGTTP  357 (401)
T ss_dssp             CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE---------CTTSSSSSCCCEEEECCSSC
T ss_pred             cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE---------cHHhCCCCCCCEEEEcCCCC
Confidence             23446666777777777763 3554445555432 2  5555433 2211         1223455 888899988877


Q ss_pred             eecCCccccCCC
Q 044683          223 VLELPQIVCGLP  234 (247)
Q Consensus       223 ~~~~~~~~~~l~  234 (247)
                      .......|.+++
T Consensus       358 ~~l~~~~F~~~~  369 (401)
T 4fdw_A          358 PQVFEKVWYGFP  369 (401)
T ss_dssp             CBCCCSSCCCSC
T ss_pred             cccccccccCCC
Confidence            766666777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=5.8e-11  Score=99.18  Aligned_cols=203  Identities=13%  Similarity=0.069  Sum_probs=141.4

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|+.+.+.. .++.....+|.+|.+|+.+++.+|.++ .++...|. ..+|+.+.+..+ ++.+...+|..+++|+.+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            467777775 566566678888888999999888887 77777776 578888888744 55566677888888888888


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCC-------------CccEEEccCCcCC-----CCCchhhhcccCcCeeeCcCC
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNN-------------SLQGLYLSDNRLF-----GRIPRWLGNLLALEDIMMPNN  144 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~l~~l~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n  144 (247)
                      ..+ ++ .++...|.. .+|+.+.+..+             +|+.+.+.++.+.     .....+|..+++|+.+.+.. 
T Consensus       234 ~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          234 PEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             CTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             CCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            764 44 566666654 56666665433             4556666655443     23456788999999999984 


Q ss_pred             cccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCCCcceeeeecchhcC---CCceEeccC
Q 044683          145 NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPCGSLGLDILPHLFRR---RPRRLAVEG  219 (247)
Q Consensus       145 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~---~L~~L~l~~  219 (247)
                      .++.....+|.++++|+.+.+..| ++.....+|...+  .+++++|.........         |..   .++.+.+..
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~---------F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKV---------WYGFPDDITVIRVPA  379 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSS---------CCCSCTTCCEEEECG
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCccccccc---------ccCCCCCccEEEeCH
Confidence            477566788999999999999665 6656667775334  8899888765432221         222   577787777


Q ss_pred             Ceee
Q 044683          220 FDLV  223 (247)
Q Consensus       220 n~l~  223 (247)
                      +.+.
T Consensus       380 ~~~~  383 (401)
T 4fdw_A          380 ESVE  383 (401)
T ss_dssp             GGHH
T ss_pred             HHHH
Confidence            6543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=6.6e-12  Score=102.88  Aligned_cols=103  Identities=26%  Similarity=0.329  Sum_probs=85.6

Q ss_pred             EEEccCC-ccccccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            6 VLDASSN-QLTGNISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         6 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      .++.+++ .++ .+|. +..+.+|++|+|++ |.++ .++...+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            5688887 888 5777 99999999999996 9998 5665555559999999999999998888899999999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQ  113 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  113 (247)
                      +|.++ .+|...+..++ |+.|++.+|.++
T Consensus        89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            99998 78877776444 777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=9e-13  Score=109.11  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=19.1

Q ss_pred             cCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683          134 LALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       134 ~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      ++|++|++++|.++..    ++..+...++|++|++++|.++
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            4455555555555421    2233344555555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=5.7e-11  Score=97.31  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             cEEEccCC-ceeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683           29 RELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA  106 (247)
Q Consensus        29 ~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  106 (247)
                      ..++++++ .++ .+|. +.. +.+|++|++++ |.++...+..|..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence            45688887 888 8888 655 78899999996 9999777788999999999999999998 56666666788888777


Q ss_pred             ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683          107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG  148 (247)
Q Consensus       107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  148 (247)
                      +++|.|+.          ..+..+..++ |+.|++.+|.+..
T Consensus        87 l~~N~l~~----------~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALES----------LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSC----------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccce----------eCHHHcccCC-ceEEEeeCCCccC
Confidence            77766652          2344444444 9999999998874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=2.1e-09  Score=88.37  Aligned_cols=165  Identities=16%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             ccCCCCCcEEEccCCcee---------ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCc
Q 044683           22 LCELVLLRELYIDNNDLR---------GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIP   92 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n~i~---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~   92 (247)
                      ...+++|+.|.+......         +.+.. +...+|+|+.|.+++|.-. ..+. + .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence            445566777766543211         01222 2233567777777666211 1222 2 36677777777666542222


Q ss_pred             hhHh-hcCCCccEEEccCCCccEEEccCCcCCCCCchhh--hcccCcCeeeCcCCcccccCchhhh---CCCCCCEEEcc
Q 044683           93 ERMA-TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL--GNLLALEDIMMPNNNLQGPIPIEFC---QLELLTILDLS  166 (247)
Q Consensus        93 ~~~~-~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~---~~~~L~~L~l~  166 (247)
                      ..+. ..+|+|+.|++..+.-..  .....+. .+...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+++
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~--~~~~~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDY--GFDGDMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGG--TCCSCGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHccCCCCcEEEEecccccc--ccchhHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            2222 136667766543110000  0000000 011111  2356777777777766543332332   35667777777


Q ss_pred             CCcCcCC----CCCC---CCCCCeEeccCCcccc
Q 044683          167 NNTIFGT----LPSC---FRTSSFVKKQDRRTVG  193 (247)
Q Consensus       167 ~n~l~~~----~~~~---~~~~~~L~l~~n~~~~  193 (247)
                      .|.+++.    ++..   +.....|++++|.++.
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            7776642    1211   2233467777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.71  E-value=4.4e-07  Score=75.46  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-------------------
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-------------------   62 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-------------------   62 (247)
                      .+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .++...+.++.+|+.+.+..+-                   
T Consensus        71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred             CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence            45666666532 55444566666777777776543 43 4444444445555444332210                   


Q ss_pred             --cccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccC
Q 044683           63 --FNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN  109 (247)
Q Consensus        63 --l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  109 (247)
                        .......+|..+.+|+.+.+..+. . .++...|..+.+|+.+.+..
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCT
T ss_pred             ccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCC
Confidence              011123345555666666665432 2 34555555555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=4.7e-08  Score=80.33  Aligned_cols=176  Identities=13%  Similarity=0.133  Sum_probs=111.3

Q ss_pred             CCCCcEEEccCCccc---------cccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhh
Q 044683            1 MTSLKVLDASSNQLT---------GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSF   71 (247)
Q Consensus         1 l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   71 (247)
                      +++|+.|.+......         +.+...+..+++|+.|.++++.-. .++. + . +++|++|++..+.++......+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHH
Confidence            367899988665321         123355677899999999987422 4444 2 3 7899999999998875444445


Q ss_pred             h--cCCCCCEEeccC--Cccccc-----CchhHh-hcCCCccEEEccCCCccEEEccCCcCCCCCchhh---hcccCcCe
Q 044683           72 F--DMKMLKSLDISH--NQLTGE-----IPERMA-TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL---GNLLALED  138 (247)
Q Consensus        72 ~--~l~~L~~L~l~~--n~~~~~-----~~~~~~-~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~---~~~~~L~~  138 (247)
                      +  .+++|++|+++.  +...+.     +...+. ..+++|+.|.+.+|          .+.+..+..+   ..+++|++
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~----------~i~~~~~~~la~a~~~~~L~~  283 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA----------EEQNVVVEMFLESDILPQLET  283 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC----------TTHHHHHHHHHHCSSGGGCSE
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC----------CCchHHHHHHHhCccCCCCCE
Confidence            4  789999999864  221111     111110 12456666655544          4433333333   25789999


Q ss_pred             eeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCCCCC--CCeEeccCCc
Q 044683          139 IMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSCFRT--SSFVKKQDRR  190 (247)
Q Consensus       139 L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~L~l~~n~  190 (247)
                      |+++.|.+++.    ++..+..+++|+.|++++|.++......+..  -..++++++.
T Consensus       284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred             EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence            99999999854    2334456799999999999987443333321  2267888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=2.2e-08  Score=74.51  Aligned_cols=119  Identities=14%  Similarity=0.029  Sum_probs=78.5

Q ss_pred             CccccCCCCCcEEEccCC-ceeecCCchhhhh---cccccEEEccCCccccC----ChHhhhcCCCCCEEeccCCccccc
Q 044683           19 SPNLCELVLLRELYIDNN-DLRGHIPVEIGTY---LLVFIHLNLSRNAFNGS----IPSSFFDMKMLKSLDISHNQLTGE   90 (247)
Q Consensus        19 ~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~   90 (247)
                      ...+...+.|++|++++| .+.+.....+...   .++|++|++++|.++..    +...+...++|++|++++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            445667888999999998 8874333333322   46799999999998743    344455668899999999998743


Q ss_pred             CchhHhh---cCCCccEEEccCCCccEEEc--cCCcCCCC----CchhhhcccCcCeeeCcCCccc
Q 044683           91 IPERMAT---GCFSLEILALSNNSLQGLYL--SDNRLFGR----IPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        91 ~~~~~~~---~~~~L~~l~l~~n~l~~l~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      -...+..   ..++|+          +|++  ++|.++..    +...+...+.|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~----------~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLI----------ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCC----------EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCce----------EEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2222222   233444          5555  45555543    3345566689999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=1.5e-08  Score=75.44  Aligned_cols=112  Identities=13%  Similarity=0.044  Sum_probs=73.0

Q ss_pred             cccccEEEccCC-ccccC----ChHhhhcCCCCCEEeccCCcccccCchhHhh---cCCCccEEEccCCCccEEEccCCc
Q 044683           50 LLVFIHLNLSRN-AFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPERMAT---GCFSLEILALSNNSLQGLYLSDNR  121 (247)
Q Consensus        50 l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~l~l~~n~l~~l~l~~n~  121 (247)
                      .++|++|++++| .++..    +...+...++|++|++++|.+.+.....+..   ..++|+          +|++++|.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~----------~L~L~~N~  104 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK----------SLNVESNF  104 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC----------EEECCSSC
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC----------EEECcCCc
Confidence            567899999998 87642    3445556788999999999886322222211   234455          44444444


Q ss_pred             CCCC----CchhhhcccCcCeeeC--cCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683          122 LFGR----IPRWLGNLLALEDIMM--PNNNLQGP----IPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       122 ~~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                      +++.    +...+...+.|++|++  ++|.++..    +...+...++|++|++++|.+.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4432    3455666778888888  77888743    3455666788888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.49  E-value=5.2e-06  Score=68.96  Aligned_cols=99  Identities=16%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCc---eeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNND---LRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      |+.+.+... ++.....+|.++.+|+.+.+..+.   ++ .+....|..+.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            556666543 444556677777778877776542   44 455555555556665555433 232334455566666666


Q ss_pred             eccCCcccccCchhHhhcCCCccEEEc
Q 044683           81 DISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      .+..+ +. .++...+..+..|+.+.+
T Consensus       143 ~lp~~-~~-~I~~~~F~~c~~L~~i~~  167 (394)
T 4gt6_A          143 TIPEG-VT-SVADGMFSYCYSLHTVTL  167 (394)
T ss_dssp             ECCTT-CC-EECTTTTTTCTTCCEEEC
T ss_pred             cccce-ee-eecccceecccccccccc
Confidence            66433 22 334444444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.3e-07  Score=69.28  Aligned_cols=58  Identities=7%  Similarity=0.028  Sum_probs=26.1

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcC----CCCCEEeccCC
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDM----KMLKSLDISHN   85 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n   85 (247)
                      .|+.|+++++.+++..-..+. .+++|++|++++|. ++...-..++.+    ++|++|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            455555555555433333332 25555555555552 333222233332    24555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.43  E-value=3.2e-06  Score=70.25  Aligned_cols=65  Identities=9%  Similarity=0.065  Sum_probs=40.2

Q ss_pred             cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683           18 ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN   85 (247)
Q Consensus        18 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   85 (247)
                      ...+|.++.+|+.+.+.++. . .++...+..+.+|+.+.+..+ ++.....+|..+..|+.+.+..+
T Consensus       154 ~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          154 GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             chhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            34567777788888876553 3 455666666777777777655 33344556666666666555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=1.6e-07  Score=73.60  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             hcccccEEEccCCcccc--CChHhhhcCCCCCEEeccCCccc
Q 044683           49 YLLVFIHLNLSRNAFNG--SIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus        49 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      .+++|++|++++|.+++  .++..+..+++|+.|++++|.++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            36677777777777765  23455567777777777777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=4.9e-07  Score=70.91  Aligned_cols=81  Identities=21%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             cCCCCCcEEEccCCceee--cCCchhhhhcccccEEEccCCccccCChHhhhcCC--CCCEEeccCCcccccCch-----
Q 044683           23 CELVLLRELYIDNNDLRG--HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK--MLKSLDISHNQLTGEIPE-----   93 (247)
Q Consensus        23 ~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~-----   93 (247)
                      ..++.|+.|++++|.+++  .++..+. .+++|+.|++++|.+.+.  ..+..+.  +|++|++++|.+.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            457899999999999984  3334443 489999999999999854  3344444  899999999999865652     


Q ss_pred             -hHhhcCCCccEEE
Q 044683           94 -RMATGCFSLEILA  106 (247)
Q Consensus        94 -~~~~~~~~L~~l~  106 (247)
                       .+...+|+|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             3455689998886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.13  E-value=3.8e-05  Score=63.28  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=15.7

Q ss_pred             hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683          129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL  165 (247)
Q Consensus       129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  165 (247)
                      +|..+.+|+.+.+..+ ++.....+|.++.+|+.+.+
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            3444445555544332 32222344444455544444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.11  E-value=3e-05  Score=63.92  Aligned_cols=138  Identities=17%  Similarity=0.123  Sum_probs=93.9

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      ++.+.+..+ +......++..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +......+|..+.+|+.+.+.
T Consensus       219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred             cceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence            444444332 33344556677788888888665 55 566666666778888888654 443555678888899999988


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCC
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE  158 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~  158 (247)
                      ++.+. .++...|.++.+|+.+.+..+ ++.+          ...+|..+.+|+.+.+..+ ++..-..+|.+++
T Consensus       295 ~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I----------~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          295 NSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTI----------QVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CTTCC-EECTTTTTTCTTCCEEECCTT-CCEE----------CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccc-eehhhhhcCCCCCCEEEcCcc-ccEE----------HHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            88787 788888888888888877643 4443          2567888999999988654 4434456666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.99  E-value=3.2e-05  Score=64.16  Aligned_cols=138  Identities=18%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             cccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCch
Q 044683           14 LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE   93 (247)
Q Consensus        14 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~   93 (247)
                      ++.....+|..+..|+.+.+..+..  .+....+..+.+|+.+.+. +.++.....+|..+.+|+.+.+..+ ++ .+..
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~  327 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILD  327 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             ceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence            3434567788999999999987654  4556666668899999996 4455466778999999999999765 55 7888


Q ss_pred             hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcC
Q 044683           94 RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI  170 (247)
Q Consensus        94 ~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  170 (247)
                      ..|.++.+|+.+.+..+ ++.          ....+|..+++|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~----------I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTK----------IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCB----------CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hHhhCCCCCCEEEECcc-cCE----------EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            88888999998887543 332          236778999999999999886542   4567788888888776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=9.4e-06  Score=59.33  Aligned_cols=88  Identities=6%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             ccccEEEccCCccccCChHhhhcCCCCCEEeccCCc-ccccCchhHhhc---CCCccEEEccCCCccEEEccCCcCCCCC
Q 044683           51 LVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ-LTGEIPERMATG---CFSLEILALSNNSLQGLYLSDNRLFGRI  126 (247)
Q Consensus        51 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~l~l~~n~l~~l~l~~n~~~~~~  126 (247)
                      ..|++|+++++.++...-..+..+++|++|++++|. +++..-..+...   .++|+.|++++|.         ++++..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~---------~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG---------NVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT---------TCCHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC---------cCCHHH
Confidence            368899999998876656667788999999999884 553222222210   1245555544432         244444


Q ss_pred             chhhhcccCcCeeeCcCCc-cc
Q 044683          127 PRWLGNLLALEDIMMPNNN-LQ  147 (247)
Q Consensus       127 ~~~~~~~~~L~~L~l~~n~-~~  147 (247)
                      -..+..+++|++|++++|. ++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCC
Confidence            5567778899999999885 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=8.8e-05  Score=55.20  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=66.7

Q ss_pred             ccCCCCCcEEEccCC-ceeecCCchhhhh---cccccEEEccCCccccC----ChHhhhcCCCCCEEeccCCcccccCch
Q 044683           22 LCELVLLRELYIDNN-DLRGHIPVEIGTY---LLVFIHLNLSRNAFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPE   93 (247)
Q Consensus        22 ~~~l~~L~~L~l~~n-~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~   93 (247)
                      +..-+.|++|+++++ .+.+.....+...   -..|++|++++|.++..    +...+..-..|++|+++.|.+.+.-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344577888888875 6653332333322   34688888888888743    334444557888999999888743333


Q ss_pred             hHhhcCCCccEEEccCCCccEEEccCC---cCCC----CCchhhhcccCcCeeeCcCCccc
Q 044683           94 RMATGCFSLEILALSNNSLQGLYLSDN---RLFG----RIPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        94 ~~~~~~~~L~~l~l~~n~l~~l~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      .+.+.+..       +..|++|+++++   .+..    .+.+.+..-+.|+.|+++.|.+.
T Consensus       117 ala~aL~~-------N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLV-------TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTT-------TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhh-------CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            33332211       112445555433   2222    12334455566777777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.36  E-value=6e-05  Score=56.10  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             ccccEEEccCC-cccc----CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCC
Q 044683           51 LVFIHLNLSRN-AFNG----SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGR  125 (247)
Q Consensus        51 ~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~  125 (247)
                      +.|++|+++++ .+..    .+..++..-+.|+.|++++|.+.+.....+...+   +    .+..|+.|++++|.|++.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL---~----~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI---E----TSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH---H----HCSSCCEEECCSSBCCHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH---h----cCCccCeEecCCCcCCHH
Confidence            45777777764 5542    2233444456677777777766522111111100   0    112233444444444432


Q ss_pred             ----CchhhhcccCcCeeeCcCC---cccc----cCchhhhCCCCCCEEEccCCcC
Q 044683          126 ----IPRWLGNLLALEDIMMPNN---NLQG----PIPIEFCQLELLTILDLSNNTI  170 (247)
Q Consensus       126 ----~~~~~~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~l  170 (247)
                          +.+.+..-+.|+.|+|++|   .+..    .+.+.+...+.|+.|+++.|.+
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                2223344455666666543   2221    1334555556666666655543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.25  E-value=0.00067  Score=47.00  Aligned_cols=56  Identities=14%  Similarity=0.185  Sum_probs=33.6

Q ss_pred             EEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683           30 ELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus        30 ~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      .++.+++.++ ..+|..+   .+++++|+|++|.++...+..|..+++|++|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5555665553 2455443   235667777777776555555666667777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.10  E-value=0.00086  Score=46.43  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=19.1

Q ss_pred             CCcEEEccCCceeecCCchhhhhcccccEEEccCCcc
Q 044683           27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF   63 (247)
Q Consensus        27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l   63 (247)
                      +++.|+|++|.|+ .++...+..+++|++|+|.+|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3555555555555 55555544455555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 7e-13
 Identities = 38/188 (20%), Positives = 62/188 (32%), Gaps = 42/188 (22%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +T+L  L  + NQL       L  L  L +L + NN +    P+   T L     L L  
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKL---TELKLGA 272

Query: 61  NAFNGSIP--------------------SSFFDMKMLKSLDISHNQLTGEIPERMATGCF 100
           N  +   P                    S   ++K L  L +  N ++   P    +   
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLT 329

Query: 101 SLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160
            L+ L  +NN +                 L NL  +  +   +N +    P     L  +
Sbjct: 330 KLQRLFFANNKVSD------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 375

Query: 161 TILDLSNN 168
           T L L++ 
Sbjct: 376 TQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 9e-11
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 20/178 (11%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS 66
           L A++NQ++      +     L EL ++ N L+    +   T L     L+L+ N  +  
Sbjct: 202 LIATNNQISDITPLGILTN--LDELSLNGNQLKDIGTLASLTNL---TDLDLANNQISNL 256

Query: 67  IPSSFFDMKMLKSLDISHNQLTGEIP---------ERMATGCFSLEILALSNNSLQGLYL 117
            P     +  L  L +  NQ++   P           +            +  +L  L L
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 118 SDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
             N +    P  + +L  L+ +   NN +          L  +  L   +N I    P
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP 368

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 8e-10
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 53  FIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
              L+L  N   G++P     +K L SL++S N L GEIP+         ++ A +NN  
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 116 YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF--GT 173
            L +NR++G +P+ L  L  L  + +  NNL G IP +   L+   +   +NN       
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Query: 174 LPSC 177
           LP+C
Sbjct: 309 LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 140 MMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSF 183
            + NN + G +P    QL+ L  L++S N + G +P       F
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 11/177 (6%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
            + + +    N+++   + +      L  L++ +N L            L+         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNR 121
                 P++F  +  L +L +    L    P                  +LQ LYL DN 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-----------ALQYLYLQDNA 140

Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
           L         +L  L  + +  N +       F  L  L  L L  N +    P  F
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 17/182 (9%)

Query: 12  NQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSF 71
            QL          L  L  L++D       +   +   L    +L L  NA       +F
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 72  FDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL--------------YL 117
            D+  L  L +  N+++  +PER   G  SL+ L L  N +  +              YL
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 118 SDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC 177
             N L       L  L AL+ + + +N               L     S++ +  +LP  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQR 267

Query: 178 FR 179
             
Sbjct: 268 LA 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + SL  L    N++         +L  L  LY+  N+    +P E    L    +L L+ 
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND 234

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
           N +     +       L+    S +++   +P+R+A      ++  L+ N LQG
Sbjct: 235 NPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 16/177 (9%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
               +LD  +N++T     +   L  L  L + NN +    P      L+    L LS+N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89

Query: 62  AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNR 121
                       ++ L+  +    ++   +               L+   +  L  +  +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNG------------LNQMIVVELGTNPLK 137

Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
             G        +  L  I + + N+     I       LT L L  N I     +  
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
           LR +   +  L   +P ++         L+L  N         F ++K L +L + +N++
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 88  TGEIPERMATGCFSLEILALSNNSLQG-----------LYLSDNRLFGRIPRWLGNLLA- 135
           +   P   A     LE L LS N L+            L + +N +          L   
Sbjct: 68  SKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 136 -LEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
            + ++        G     F  ++ L+ + +++  I
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 39/221 (17%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           + +L  L   +N+++         LV L  LY+  N L+  +P ++         L +  
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT---LQELRVHE 109

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA-TGCFSLEILALSNN--------- 110
           N       S F  +  +  +++  N L     E  A  G   L  + +++          
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169

Query: 111 --SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI------------------ 150
             SL  L+L  N++       L  L  L  + +  N++                      
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 151 -----PIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKK 186
                P      + + ++ L NN I     + F    +  K
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
             SL  L    N++T   + +L  L  L +L +  N +       +       +      
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--PHLRELHLN 227

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
           N     +P    D K ++ + + +N ++  I        F          S  G+ L  N
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGS----NDFCPPGYNTKKASYSGVSLFSN 282

Query: 121 RL 122
            +
Sbjct: 283 PV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 13/142 (9%)

Query: 66  SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGR 125
            +P           LD+ +N++T         G F       +  +L  L L +N++   
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKD-----GDFK------NLKNLHTLILINNKISKI 70

Query: 126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVK 185
            P     L+ LE + +  N L+         L+ L + +     +  ++ +       V+
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 186 KQDRRTVGKPCGSLGLDILPHL 207
                       +     +  L
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKL 152

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 24/181 (13%)

Query: 7   LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS 66
           L  +  + +G  +     +  L  + I + ++   IP  +   L     L+L  N     
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---TELHLDGNKITKV 186

Query: 67  IPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRI 126
             +S   +  L  L +S N ++      +      L  L L+NN L            ++
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV-----------KV 234

Query: 127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL------LTILDLSNN--TIFGTLPSCF 178
           P  L +   ++ + + NNN+      +FC           + + L +N    +   PS F
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 179 R 179
           R
Sbjct: 295 R 295

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 5   KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN 64
           +VL  +   LT  +  +L +L+L+  L + +N LR   P       L  +  +       
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS----DNA 54

Query: 65  GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFG 124
                   ++  L+ L + +N+L      +    C  L +L L  NSL        RL  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 125 RIPR 128
            +P 
Sbjct: 115 MLPS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  +  LD S N+L          L  LR L +          V+    L     L L  
Sbjct: 19  LLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 74

Query: 61  NAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPER 94
           N     +          L  L++  N L  E   +
Sbjct: 75  NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 56  LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           L+L+      ++      + ++  LD+SHN+L    P              L+      +
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-------------LAALRCLEV 47

Query: 116 YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
             + +     +          E ++  N   Q            L +L+L  N++
Sbjct: 48  LQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-06
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 55  HLNLSRNAFNG----SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
            L L+    +     S+ ++      L+ LD+S+N L      ++       E +     
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV------ESVRQPGC 426

Query: 111 SLQGLYLSDNRLFGRIPRWLGNLL 134
            L+ L L D      +   L  L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-06
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 10/106 (9%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG----SIPSSFFDMKMLKSLDIS 83
           ++ L I   +L      E+   L     + L            I S+      L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 84  HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW 129
            N+L       +  G      L   +  +Q L L +  L G     
Sbjct: 64  SNELGDVGVHCVLQG------LQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 77  LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLAL 136
           ++SLDI   +L+      +       +++ L +  L      D      I   L    AL
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD------ISSALRVNPAL 57

Query: 137 EDIMMPNNNLQGPIPIEFCQL-----ELLTILDLSNN 168
            ++ + +N L         Q        +  L L N 
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 8/103 (7%)

Query: 55  HLNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
            L++     + +  +     ++  + + +    LT          C  +      N +L 
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-------RCKDISSALRVNPALA 58

Query: 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ 156
            L L  N L       +   L      +   +LQ         
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 4e-04
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 68  PSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP 127
                   +L+ L ++   ++          C SL    L+N+SL+ L LS+N L     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDS-------SCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 128 RWLGNLL-----ALEDIMMPNNNLQGPIPIEFCQLEL----LTIL 163
             L   +      LE +++ +      +      LE     L ++
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 33/118 (27%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
            + L+VL  +   ++ +   +L   +      + N+ LR                L+LS 
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATL------LANHSLR---------------ELDLSN 406

Query: 61  NAFNGSIPSSFFD-----MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
           N    +      +       +L+ L +     + E+ +        L+ L     SL+
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 3   SLKVLDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVF---IHLNL 58
            ++ LD    +L+      L   L   + + +D+  L      +I + L V      LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 59  SRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS 111
             N                    ++ L + +  LTG     +++   +L  L   + S
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 32/176 (18%), Positives = 51/176 (28%), Gaps = 10/176 (5%)

Query: 2   TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
               +L  S N L       L     L +L +D  +L           L      +    
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 62  AFNG------SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
           +         ++         L SL +   +  GE+ E    G     +          L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 116 YL---SDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
                ++N L       L  L  L+ +++  N+L   IP  F    LL    L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 38/189 (20%)

Query: 28  LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
             E+  D  +L   +P ++         L+LS N       ++      L  L++   +L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 88  TGEIPERMATGCFSLEILALSNNSLQG--------------------------------- 114
           T    +       +L++      SL                                   
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 115 -LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
            LYL  N L    P  L     LE + + NNNL          LE L  L L  N+++  
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 174 LPSCFRTSS 182
               F +  
Sbjct: 188 PKGFFGSHL 196

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 17  NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKM 76
            + P L       E     N+    +P  +   L     L L  N+   +IP  FF   +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 77  LKSLDISHNQL 87
           L    +  N  
Sbjct: 197 LPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 17/93 (18%)

Query: 53  FIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-- 110
                   NA +  I S       L+ L++S+N+L  E+P         LE L  S N  
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHL 316

Query: 111 --------SLQGLYLSDNRL--FGRIPRWLGNL 133
                   +L+ L++  N L  F  IP  + +L
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/133 (12%), Positives = 43/133 (32%), Gaps = 13/133 (9%)

Query: 27  LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ 86
           L + L +   +L   +   + +  +  I     R+  +  +   F   + ++ +D+S++ 
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGV--IAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSV 57

Query: 87  LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
           +       + + C  L+ L+L    L             I   L     L  + +   + 
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLS----------DPIVNTLAKNSNLVRLNLSGCSG 107

Query: 147 QGPIPIEFCQLEL 159
                ++      
Sbjct: 108 FSEFALQTLLSSC 120

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 6/177 (3%)

Query: 1   MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
           +  +  L A    +T      +  L  L  L + +N +    P++  T +          
Sbjct: 40  LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 61  NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA--TGCFSLEILALSNNSLQGLYLS 118
              +            L S  I+       +            +  ++         YLS
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 119 DNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
                      L NL  L  +   +N +    P     L  L  + L NN I    P
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=7.9e-28  Score=193.51  Aligned_cols=225  Identities=26%  Similarity=0.302  Sum_probs=187.8

Q ss_pred             CCcEEEccCCcccc--ccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            3 SLKVLDASSNQLTG--NISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         3 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      .++.|+++++.+++  .+|..+.+++.|++|++++ |.++|.+|+.+++ +++|++|++++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcc
Confidence            47889999999987  4789999999999999986 8899899999887 999999999999999888888999999999


Q ss_pred             EeccCCcccccCchhHhhcCCCccEEEccCCCc---------------cEEEccCCcCCCCCchhhhcccCcCeeeCcCC
Q 044683           80 LDISHNQLTGEIPERMATGCFSLEILALSNNSL---------------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNN  144 (247)
Q Consensus        80 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l---------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  144 (247)
                      ++++.|.+.+.+|..+. .+++++.+++++|.+               +.++++.|++++..+..+..+.. ..++++.+
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999998878887765 499999999998844               36778888888877877776654 46888999


Q ss_pred             cccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCC
Q 044683          145 NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGF  220 (247)
Q Consensus       145 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n  220 (247)
                      ...+.++..+..++.++.+++++|.+++.++....  ....|++++|+++|.+|.         ++..  +|++|+|++|
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~---------~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ---------GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG---------GGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCccCeecccCCh---------HHhCCCCCCEEECcCC
Confidence            88888888888999999999999999877664322  344999999999987654         4555  8999999999


Q ss_pred             eeeecCCccccCCCchhhhh
Q 044683          221 DLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       221 ~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +++|.+|+ ++++++|+.+.
T Consensus       279 ~l~g~iP~-~~~L~~L~~l~  297 (313)
T d1ogqa_         279 NLCGEIPQ-GGNLQRFDVSA  297 (313)
T ss_dssp             EEEEECCC-STTGGGSCGGG
T ss_pred             cccccCCC-cccCCCCCHHH
Confidence            99999885 56666665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=4.5e-26  Score=183.15  Aligned_cols=214  Identities=25%  Similarity=0.345  Sum_probs=182.8

Q ss_pred             CCCCcEEEccC-CccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683            1 MTSLKVLDASS-NQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS   79 (247)
Q Consensus         1 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   79 (247)
                      +++|++|++++ |.+++.+|..|.++++|++|++++|.+.+..+..+.. +..|++++++.|.+...+|..+..++++++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhcccccccccccccCchhhccCcccce
Confidence            57899999987 7999999999999999999999999999666655554 889999999999999899999999999999


Q ss_pred             EeccCCcccccCchhHhhcCCC-ccEEEccCCCcc-------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683           80 LDISHNQLTGEIPERMATGCFS-LEILALSNNSLQ-------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN  145 (247)
Q Consensus        80 L~l~~n~~~~~~~~~~~~~~~~-L~~l~l~~n~l~-------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  145 (247)
                      +++++|.+.+.+|..+.. +.. ++.+++++|+++             .+++..+...+.+|..+..+++++.+++++|.
T Consensus       154 l~l~~n~l~~~ip~~~~~-l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eecccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998889987765 555 588888888654             67888888888899999999999999999999


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCe-
Q 044683          146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFD-  221 (247)
Q Consensus       146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~-  221 (247)
                      +++.++ .+..+++|+.|++++|++++.+|..+..   ..+|++++|+++|.+|....       +. +|+.+++++|+ 
T Consensus       233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~-------L~-~L~~l~l~~N~~  303 (313)
T d1ogqa_         233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-------LQ-RFDVSAYANNKC  303 (313)
T ss_dssp             ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT-------GG-GSCGGGTCSSSE
T ss_pred             cccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc-------CC-CCCHHHhCCCcc
Confidence            986654 6788999999999999999999987753   33999999999998775211       11 88899999996 


Q ss_pred             eeec
Q 044683          222 LVLE  225 (247)
Q Consensus       222 l~~~  225 (247)
                      +.|.
T Consensus       304 l~g~  307 (313)
T d1ogqa_         304 LCGS  307 (313)
T ss_dssp             EEST
T ss_pred             ccCC
Confidence            5654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=160.32  Aligned_cols=200  Identities=20%  Similarity=0.203  Sum_probs=113.7

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEcc-CCccccCChHhhhcCCCCCEEec
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS-RNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +++|++++|.|+...+..|.++++|++|++++|.+. .++...+..+..++.+... .+.++...+..|+.+++|+++++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            455555555555444444555555555555555555 3333333334444444432 33333333444555555555555


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      ++|.+. .++...+....+|+          .+++++|.+++..+..+..+++|+.|++++|.+++..+.++.++++|+.
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~----------~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQ----------YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCC----------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCcccc-cccccccchhcccc----------hhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            555554 33333333344444          4455555555445566667777777777777777666677777777777


Q ss_pred             EEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683          163 LDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL  224 (247)
Q Consensus       163 L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~  224 (247)
                      +++++|++++..|..|...   ..|++++|.+.+..+         .+|..  +|++|++++|.+.+
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~---------~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT---------EALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH---------HHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhhhccccccChhHhhhhhhcccccccccccccccc---------cccccccccCEEEecCCCCCC
Confidence            7777777776666666533   277777777765432         23444  67777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=6.7e-22  Score=157.89  Aligned_cols=228  Identities=18%  Similarity=0.188  Sum_probs=139.6

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.|+...+.+|.++++|++|++++|.+. .+++..+..+++|++|++++|+++ .+|..  ..+.+..++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccC-cCccc--hhhhhhhhh
Confidence            35777777777777554556777777777777777777 454444444777777777777776 33432  234566666


Q ss_pred             ccCCcccccCchhHh--------------------------hcCCCccEEEccCCC-----------ccEEEccCCcCCC
Q 044683           82 ISHNQLTGEIPERMA--------------------------TGCFSLEILALSNNS-----------LQGLYLSDNRLFG  124 (247)
Q Consensus        82 l~~n~~~~~~~~~~~--------------------------~~~~~L~~l~l~~n~-----------l~~l~l~~n~~~~  124 (247)
                      +..|.+. .++...+                          ..+++|+.+++.+|.           ++.+++++|...+
T Consensus       107 ~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         107 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE
T ss_pred             ccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCC
Confidence            6666554 3333222                          234455666665553           3466777777776


Q ss_pred             CCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCccee
Q 044683          125 RIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGL  201 (247)
Q Consensus       125 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l  201 (247)
                      ..+..+..++.+++|++++|.+++..+..+.++++|++|++++|.++ .+|..+..   ..+|++++|+++......+. 
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~-  263 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC-  263 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS-
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc-
Confidence            66777777777777777777777666677777778888888888777 44544442   22777877777743222220 


Q ss_pred             eeecchhcC--CCceEeccCCeee--ecCCccccCCCchhh
Q 044683          202 DILPHLFRR--RPRRLAVEGFDLV--LELPQIVCGLPTCFA  238 (247)
Q Consensus       202 ~l~p~~~~~--~L~~L~l~~n~l~--~~~~~~~~~l~~L~~  238 (247)
                        .+.....  +|+.|++++|.+.  ...|.+|..+....+
T Consensus       264 --~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         264 --PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             --CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             --CcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence              0111111  6777888887664  234555555544433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.5e-22  Score=157.44  Aligned_cols=211  Identities=21%  Similarity=0.195  Sum_probs=171.3

Q ss_pred             EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC-
Q 044683            6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH-   84 (247)
Q Consensus         6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-   84 (247)
                      .++.++++++ .+|..+.  +.+++|++++|+++ .+|...+..+++|+++++++|.+....+..+..+..++.+.... 
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4677777787 5666554  57899999999998 77877666799999999999999987788888889999987754 


Q ss_pred             CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683           85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD  164 (247)
Q Consensus        85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  164 (247)
                      +.++ .++...+..+++|+.+++++|.+.          ...+..+...++|+.+++++|.+++..+.++..+++|++|+
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~----------~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQ----------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccc-cccchhhcccccCCEEecCCcccc----------cccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            4565 777766777888887766665543          34456677788999999999999977778899999999999


Q ss_pred             ccCCcCcCCCCCCCCCCC---eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          165 LSNNTIFGTLPSCFRTSS---FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       165 l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      +++|.+++..+..|....   .+++++|++++..|.         +|..  ++++|++++|++++..+..|..+++|+.+
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~---------~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH---------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChh---------HhhhhhhcccccccccccccccccccccccccCEE
Confidence            999999987787776433   999999999976554         3455  89999999999998888899999988876


Q ss_pred             h
Q 044683          240 G  240 (247)
Q Consensus       240 ~  240 (247)
                      .
T Consensus       231 ~  231 (284)
T d1ozna_         231 R  231 (284)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-22  Score=155.33  Aligned_cols=172  Identities=22%  Similarity=0.201  Sum_probs=110.5

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .+.+++.++++++ .+|+.+.  +.+++|++++|.++ .+|...+..+++|++|++++|.++. ++ .++.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            4566788888888 4666554  47888999999888 6666655568889999999998873 44 3567888999999


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      ++|+++ ..+.. +..+++|+.+++++|.+.          +..+..+..+.+++++++++|.++...+..+..++.++.
T Consensus        85 s~N~l~-~~~~~-~~~l~~L~~L~l~~~~~~----------~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          85 SHNQLQ-SLPLL-GQTLPALTVLDVSFNRLT----------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             CSSCCS-SCCCC-TTTCTTCCEEECCSSCCC----------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccc-ccccc-cccccccccccccccccc----------eeeccccccccccccccccccccceeccccccccccchh
Confidence            998887 55543 345777877777666443          222333444555555555555555444444455555556


Q ss_pred             EEccCCcCcCCCCCCCCC---CCeEeccCCccc
Q 044683          163 LDLSNNTIFGTLPSCFRT---SSFVKKQDRRTV  192 (247)
Q Consensus       163 L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~  192 (247)
                      +++++|++++..+..|..   ...|++++|+++
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccCccccccccccceeecccCCCc
Confidence            666666555444444432   125555655555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1e-21  Score=156.77  Aligned_cols=207  Identities=21%  Similarity=0.210  Sum_probs=140.6

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      .++++-++++++ .+|..+.  +.+++|++++|+++ .+|+..+..+++|++|++++|.+....|.+|..+++|++++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            467888888888 5676664  68999999999998 8887666669999999999999997778889999999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCcc----------------------------------------EEEccCCcCC
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQ----------------------------------------GLYLSDNRLF  123 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~----------------------------------------~l~l~~n~~~  123 (247)
                      +|+++ .+|...   ...++.+...+|.+.                                        .+++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            99998 788754   346777877777433                                        3444444443


Q ss_pred             CCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcce
Q 044683          124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLG  200 (247)
Q Consensus       124 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~  200 (247)
                      . ++..  ..++++.|++++|..++..+..+..++.+++|++++|.+++..+..+.   ....|++++|+++.       
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-------  233 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-------  233 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-------
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-------
Confidence            1 2221  134555555555555544455555555666666666666554444443   12256666665553       


Q ss_pred             eeeecchhcC--CCceEeccCCeeeecCCcccc
Q 044683          201 LDILPHLFRR--RPRRLAVEGFDLVLELPQIVC  231 (247)
Q Consensus       201 l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~  231 (247)
                         +|.++..  +|+.|++++|+|+.....+|.
T Consensus       234 ---lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         234 ---VPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ---CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ---cccccccccCCCEEECCCCccCccChhhcc
Confidence               4445555  888888888888865444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.6e-22  Score=155.02  Aligned_cols=175  Identities=29%  Similarity=0.324  Sum_probs=145.5

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.|++..+..|..+++|++|++++|.++ .++..  ..+++|++|++++|+++ ..+..+..+++|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccccccccccc-cccccccccccccccc
Confidence            36899999999999777788999999999999999998 66643  34899999999999998 5577888999999999


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      ++++.+. .++...+..+.+++.+++.+|.++          ...+..+..+++++.+++++|++++..+..+..+++|+
T Consensus       107 l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~----------~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         107 VSFNRLT-SLPLGALRGLGELQELYLKGNELK----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             ccccccc-eeeccccccccccccccccccccc----------eeccccccccccchhcccccccccccCccccccccccc
Confidence            9999998 677666666778877666666554          34466677889999999999999977778899999999


Q ss_pred             EEEccCCcCcCCCCC-CCCCC--CeEeccCCccc
Q 044683          162 ILDLSNNTIFGTLPS-CFRTS--SFVKKQDRRTV  192 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~-~~~~~--~~L~l~~n~~~  192 (247)
                      +|++++|+|+ .+|. .+...  ..|++++|.+.
T Consensus       176 ~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             eeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999 5554 44433  38999999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=3.9e-19  Score=145.57  Aligned_cols=225  Identities=21%  Similarity=0.215  Sum_probs=138.7

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      .+|++|++++++|+..  +.+..+++|++|++++|.++ .+++ +. .+++|++|++++|.+... + .++.+++|+.++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCcccccccccccccccc-c-cccccccccccc
Confidence            4688899999988743  45778889999999999988 6664 44 388899999999988743 3 377888888888


Q ss_pred             ccCCcccccCch--------------------------------------------------------------hHhhcC
Q 044683           82 ISHNQLTGEIPE--------------------------------------------------------------RMATGC   99 (247)
Q Consensus        82 l~~n~~~~~~~~--------------------------------------------------------------~~~~~~   99 (247)
                      ++++.+++..+.                                                              .....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            887665410000                                                              112234


Q ss_pred             CCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccC
Q 044683          100 FSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN  167 (247)
Q Consensus       100 ~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  167 (247)
                      ++++.+++.+|.            ++++++++|.+++  ...+..+++++.+++++|.+++..  .+..+++|+++++++
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~  272 (384)
T d2omza2         197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGA  272 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCS
T ss_pred             cccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccC
Confidence            566677766653            3366677776653  234556666677777766666432  245566666666666


Q ss_pred             CcCcCCCC--------------------CCC---CCCCeEeccCCcccccCCCcc-----eeee-------ecchhcC--
Q 044683          168 NTIFGTLP--------------------SCF---RTSSFVKKQDRRTVGKPCGSL-----GLDI-------LPHLFRR--  210 (247)
Q Consensus       168 n~l~~~~~--------------------~~~---~~~~~L~l~~n~~~~~~~~~~-----~l~l-------~p~~~~~--  210 (247)
                      |.+++..+                    ..+   .....+++++|++++..+...     .+++       +| ++..  
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~  351 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLT  351 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred             cccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCC
Confidence            66553211                    001   111266777777665422110     2222       33 3444  


Q ss_pred             CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683          211 RPRRLAVEGFDLVLELPQIVCGLPTCFALG  240 (247)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  240 (247)
                      +|++|++++|++++..|  ++++++|+.|.
T Consensus       352 ~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         352 NINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             CCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            78888888888876443  66776666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=4e-18  Score=139.52  Aligned_cols=216  Identities=21%  Similarity=0.256  Sum_probs=153.4

Q ss_pred             ccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683            9 ASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus         9 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      ++...+++.+.  ...+.++++|+++++.|+ .+. ++.. +++|++|++++|.++. ++ .++.+++|++|++++|.+.
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~-gl~~-L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCC-Ccc-cccc-CCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence            44555555433  345678999999999998 663 4544 8999999999999995 44 3899999999999999998


Q ss_pred             ccCchhHhhcCCCccEEEccCCCcc-------------------------------------------------------
Q 044683           89 GEIPERMATGCFSLEILALSNNSLQ-------------------------------------------------------  113 (247)
Q Consensus        89 ~~~~~~~~~~~~~L~~l~l~~n~l~-------------------------------------------------------  113 (247)
                       .++.  +..+++|+.+++.++.++                                                       
T Consensus       102 -~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (384)
T d2omza2         102 -DITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE  178 (384)
T ss_dssp             -CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred             -cccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence             5554  446899999998877322                                                       


Q ss_pred             ----------------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCc
Q 044683          114 ----------------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF  171 (247)
Q Consensus       114 ----------------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  171 (247)
                                            .+++++|.+++..+  +..+++|+.+++++|.++. + ..+..+++|+.+++++|.++
T Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC
Confidence                                  66777777775443  4567899999999999984 3 46788999999999999998


Q ss_pred             CCCCCC-CCCCCeEeccCCcccccCCCcc---------------------------eeee-------ecchhcC--CCce
Q 044683          172 GTLPSC-FRTSSFVKKQDRRTVGKPCGSL---------------------------GLDI-------LPHLFRR--RPRR  214 (247)
Q Consensus       172 ~~~~~~-~~~~~~L~l~~n~~~~~~~~~~---------------------------~l~l-------~p~~~~~--~L~~  214 (247)
                      +..+.. ......++++++++++..+..-                           .+++       ++. +..  +|++
T Consensus       255 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~  333 (384)
T d2omza2         255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR  333 (384)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred             CCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCE
Confidence            654321 2234488888888775432110                           1111       221 333  7788


Q ss_pred             EeccCCeeeecCCccccCCCchhhhhc
Q 044683          215 LAVEGFDLVLELPQIVCGLPTCFALGK  241 (247)
Q Consensus       215 L~l~~n~l~~~~~~~~~~l~~L~~l~~  241 (247)
                      |++++|++++ + +.++++++|+.|+-
T Consensus       334 L~L~~n~l~~-l-~~l~~l~~L~~L~l  358 (384)
T d2omza2         334 LFFANNKVSD-V-SSLANLTNINWLSA  358 (384)
T ss_dssp             EECCSSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             EECCCCCCCC-C-hhHcCCCCCCEEEC
Confidence            8888887764 2 35777777766653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=6e-20  Score=136.82  Aligned_cols=171  Identities=19%  Similarity=0.190  Sum_probs=104.0

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL  107 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l  107 (247)
                      +.++.++++++ .+|+.+.   +++++|++++|.++. ..+..|..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeee
Confidence            45677777776 6776553   467777777777754 33455667777777777777776 555555555666666666


Q ss_pred             cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCC-C-CCCeEe
Q 044683          108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF-R-TSSFVK  185 (247)
Q Consensus       108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~-~~~~L~  185 (247)
                      ++|+++.+          .+.+|..+++|++|+|++|++++..+++|..+++|+++++++|.+.......+ . ......
T Consensus        86 s~N~l~~l----------~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~  155 (192)
T d1w8aa_          86 GENKIKEI----------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS  155 (192)
T ss_dssp             CSCCCCEE----------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred             cccccccc----------CHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhc
Confidence            66555543          35556677777777777777776666777777777777777777763322111 0 111334


Q ss_pred             ccCCcccccCCCcceeeeecchhcCCCceEeccCCeeee
Q 044683          186 KQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVL  224 (247)
Q Consensus       186 l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~  224 (247)
                      +..+.++...|.         .+. .++.++++.|.++.
T Consensus       156 l~~~~~~c~~p~---------~l~-~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         156 LNGGAARCGAPS---------KVR-DVQIKDLPHSEFKC  184 (192)
T ss_dssp             CSGGGCBBCSST---------TTT-TSBGGGSCTTTCCC
T ss_pred             ccCCCeEeCCCh---------hhc-CCEeeecCHhhCcC
Confidence            444554433332         222 45566777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-18  Score=132.59  Aligned_cols=214  Identities=18%  Similarity=0.092  Sum_probs=152.5

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccC-ChHhhhcCCCCCEEecc
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGS-IPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~   83 (247)
                      +.++.++.+++ .+|+.+.  +++++|++++|.++ .+|...+.++++|++|++++|.+... .+.+|..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777887 5665553  47899999999998 78877666689999999999987643 34567888999999876


Q ss_pred             C-CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCC-CCC
Q 044683           84 H-NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE-LLT  161 (247)
Q Consensus        84 ~-n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~  161 (247)
                      . |.+. ..+...+..+++|+.+++.+|.++...         ....+..++.+..+...++.+....+..+..++ .++
T Consensus        87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~---------~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          87 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLP---------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             CCTTCC-EECTTSEECCTTCCEEEEESCCCCSCC---------CCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             cccccc-ccccccccccccccccccchhhhcccc---------cccccccccccccccccccccccccccccccccccce
Confidence            5 5665 566666667888888887777665221         112234455566666677777755556666554 788


Q ss_pred             EEEccCCcCcCCCCCCCCCCC---eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCch
Q 044683          162 ILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTC  236 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L  236 (247)
                      .+++++|+++...+..+...+   .+++++|.++.. |..        .|..  +|++|++++|+++...+..|.++++|
T Consensus       157 ~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l-~~~--------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL-PND--------VFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             EEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCC-CTT--------TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             eeecccccccccccccccchhhhccccccccccccc-cHH--------HhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence            899999999866666666554   456777887743 221        1344  99999999999997666678888888


Q ss_pred             hhhhc
Q 044683          237 FALGK  241 (247)
Q Consensus       237 ~~l~~  241 (247)
                      +.++.
T Consensus       228 ~~l~~  232 (242)
T d1xwdc1         228 RARST  232 (242)
T ss_dssp             ESSSE
T ss_pred             ccCcC
Confidence            87653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.4e-18  Score=129.22  Aligned_cols=174  Identities=20%  Similarity=0.277  Sum_probs=133.6

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS   83 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   83 (247)
                      .++++.++++++ .+|..+.  +.+++|++++|.++..++...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467888999988 5666554  5889999999999756777777778999999999999988888888899999999999


Q ss_pred             CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683           84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL  163 (247)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  163 (247)
                      +|+++ .++...|.++++|+.|++++|.++.+          .+.+|..+++|+++++++|.+....... .-...++.+
T Consensus        87 ~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i----------~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~  154 (192)
T d1w8aa_          87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCV----------MPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKK  154 (192)
T ss_dssp             SCCCC-EECSSSSTTCTTCCEEECCSSCCCEE----------CTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHH
T ss_pred             ccccc-ccCHHHHhCCCcccccccCCcccccc----------CHHHhcCCcccccccccccccccccchH-HHhhhhhhh
Confidence            99998 78877788888888777777777654          3667888899999999999887443211 111234555


Q ss_pred             EccCCcCcCCCCCCCCCCCeEeccCCccc
Q 044683          164 DLSNNTIFGTLPSCFRTSSFVKKQDRRTV  192 (247)
Q Consensus       164 ~l~~n~l~~~~~~~~~~~~~L~l~~n~~~  192 (247)
                      .+..+.++...|..+.....++++.|.++
T Consensus       155 ~l~~~~~~c~~p~~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         155 SLNGGAARCGAPSKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CCSGGGCBBCSSTTTTTSBGGGSCTTTCC
T ss_pred             cccCCCeEeCCChhhcCCEeeecCHhhCc
Confidence            66777777666766666667788887765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.6e-17  Score=122.67  Aligned_cols=160  Identities=25%  Similarity=0.312  Sum_probs=111.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      .+|++|++++|.++...  .+..+++|++|++++|.++ .++. +. .+++|++|++++|+++. ++ .+..+++|+.++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-cc-cCccccccccccccccc-cc-cccccccccccc
Confidence            35777888888777432  3667788888888888887 4553 33 37788888888888773 44 467788888888


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      +++|.+. .++.  +..++.++.+++++|.++          +  +..+..+++|+++++++|.+++ ++ .+.++++|+
T Consensus       119 l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~----------~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~  181 (210)
T d1h6ta2         119 LEHNGIS-DING--LVHLPQLESLYLGNNKIT----------D--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQ  181 (210)
T ss_dssp             CTTSCCC-CCGG--GGGCTTCCEEECCSSCCC----------C--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCC
T ss_pred             ccccccc-cccc--cccccccccccccccccc----------c--cccccccccccccccccccccc-cc-cccCCCCCC
Confidence            8888776 4443  334667776666665543          2  3346678899999999999984 33 378899999


Q ss_pred             EEEccCCcCcCCCCCCCC---CCCeEecc
Q 044683          162 ILDLSNNTIFGTLPSCFR---TSSFVKKQ  187 (247)
Q Consensus       162 ~L~l~~n~l~~~~~~~~~---~~~~L~l~  187 (247)
                      +|++++|.+++ ++. +.   ....|+++
T Consensus       182 ~L~Ls~N~i~~-l~~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         182 NLYLSKNHISD-LRA-LAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCB-CGG-GTTCTTCSEEEEE
T ss_pred             EEECCCCCCCC-Chh-hcCCCCCCEEEcc
Confidence            99999999984 442 33   33377765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.7e-17  Score=125.12  Aligned_cols=180  Identities=14%  Similarity=0.093  Sum_probs=121.2

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCEE
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++++|++++|.|+...+.+|.++++|++|++++|.+...++...+..++.++++.+.. |.+....+..|..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            36899999999999666678999999999999999987667777666688999998764 57776777888999999999


Q ss_pred             eccCCcccccCchh-HhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcc-cCcCeeeCcCCcccccCchhhhCCC
Q 044683           81 DISHNQLTGEIPER-MATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNL-LALEDIMMPNNNLQGPIPIEFCQLE  158 (247)
Q Consensus        81 ~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~~~  158 (247)
                      ++++|.+. ..+.. ....+..+......++.+..+.          +..+..+ ..++.+++.+|+++...+.. ....
T Consensus       109 ~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~----------~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~  176 (242)
T d1xwdc1         109 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE----------RNSFVGLSFESVILWLNKNGIQEIHNCA-FNGT  176 (242)
T ss_dssp             EEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEEC----------TTSSTTSBSSCEEEECCSSCCCEECTTT-TTTC
T ss_pred             ccchhhhc-cccccccccccccccccccccccccccc----------ccccccccccceeeeccccccccccccc-ccch
Confidence            99999987 44432 2222334444444444443321          2233333 35667777777777433333 3344


Q ss_pred             CCCEE-EccCCcCcCCCCCCCCC---CCeEeccCCcccc
Q 044683          159 LLTIL-DLSNNTIFGTLPSCFRT---SSFVKKQDRRTVG  193 (247)
Q Consensus       159 ~L~~L-~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~  193 (247)
                      +++.+ ++++|.++...+..|..   ..+|++++|+++.
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence            44444 45667777444445542   2277777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-16  Score=120.84  Aligned_cols=182  Identities=20%  Similarity=0.260  Sum_probs=103.2

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      +|+.|++.+|.++. + +.+..+++|++|++++|.++ .+++ + ..+++++++++++|.++. ++ .++.+++|+.+++
T Consensus        42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~-l-~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP-L-KNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred             CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc-c-cccccccccccccccccc-cc-ccccccccccccc
Confidence            34555555555542 2 23445555555555555554 2221 2 224455555555554442 22 2444555555555


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI  162 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  162 (247)
                      +++... .++.  +...+.+.          .+.+..+.+..  ...+..+++|++|++++|.++..  ..+.++++|++
T Consensus       115 ~~~~~~-~~~~--~~~~~~~~----------~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~  177 (227)
T d1h6ua2         115 TSTQIT-DVTP--LAGLSNLQ----------VLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT  177 (227)
T ss_dssp             TTSCCC-CCGG--GTTCTTCC----------EEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             cccccc-ccch--hccccchh----------hhhchhhhhch--hhhhccccccccccccccccccc--hhhccccccee
Confidence            554443 2211  11233333          44555555443  23467788999999999998743  34788999999


Q ss_pred             EEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccC
Q 044683          163 LDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEG  219 (247)
Q Consensus       163 L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~  219 (247)
                      |++++|++++..+ ..+.....|++++|++++..|           +..  +|+.|++++
T Consensus       178 L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~-----------l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----------LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----------GTTCTTCCEEEEEE
T ss_pred             cccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc-----------cccCCCCCEEEeeC
Confidence            9999999985332 122344499999999886432           333  899999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.1e-16  Score=121.88  Aligned_cols=198  Identities=16%  Similarity=0.209  Sum_probs=147.8

Q ss_pred             EEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCc
Q 044683            7 LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ   86 (247)
Q Consensus         7 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   86 (247)
                      ++++.+.+++..  .++.+.+|+.|++.+|.++ .++ .+.. +++|++|++++|.++...|  +..+++++++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~-l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhc-CCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            345566666543  4466789999999999998 674 4554 9999999999999985433  8899999999999999


Q ss_pred             ccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEcc
Q 044683           87 LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS  166 (247)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  166 (247)
                      ++ .++.  +..+++|+.+.++++...          +  ...+...+.++.+.++++.+...  ..+...++|++|+++
T Consensus        97 ~~-~i~~--l~~l~~L~~l~l~~~~~~----------~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          97 LK-NVSA--IAGLQSIKTLDLTSTQIT----------D--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIG  159 (227)
T ss_dssp             CS-CCGG--GTTCTTCCEEECTTSCCC----------C--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECC
T ss_pred             cc-cccc--cccccccccccccccccc----------c--cchhccccchhhhhchhhhhchh--hhhcccccccccccc
Confidence            87 6653  345888887777666443          1  23356678899999999988743  346789999999999


Q ss_pred             CCcCcCCCC-CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhhc
Q 044683          167 NNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALGK  241 (247)
Q Consensus       167 ~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~  241 (247)
                      +|.+++..+ ..+.....|++++|++++..+           +..  +|++|++++|++++. + .++++++|+.++-
T Consensus       160 ~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-----------l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         160 NAQVSDLTPLANLSKLTTLKADDNKISDISP-----------LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL  224 (227)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred             ccccccchhhcccccceecccCCCccCCChh-----------hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence            999974433 223344599999999886321           333  899999999999964 3 3788888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.3e-16  Score=116.89  Aligned_cols=147  Identities=22%  Similarity=0.303  Sum_probs=109.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      +++++|++++|.++..  +.+..+++|++|++++|.++ .+++ +. .+++|++|++++|.+.. ++ .+..+++|++++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-cc-CCccccccccccccccc-cc-cccccccccccc
Confidence            4678888888888743  34777888888888888887 4543 43 37888888888888773 33 377888888888


Q ss_pred             ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683           82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT  161 (247)
Q Consensus        82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  161 (247)
                      ++++... .++.  +..+++|+.+++++|.++           . .+.+..+++++.|++.+|++++. + .+.++++|+
T Consensus       113 l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~-----------~-~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~  175 (199)
T d2omxa2         113 LFNNQIT-DIDP--LKNLTNLNRLELSSNTIS-----------D-ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLE  175 (199)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCSEEECCSSCCC-----------C-CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             ccccccc-cccc--cchhhhhHHhhhhhhhhc-----------c-cccccccccccccccccccccCC-c-cccCCCCCC
Confidence            8888776 4332  334677776666665543           2 23577889999999999999853 3 578999999


Q ss_pred             EEEccCCcCcC
Q 044683          162 ILDLSNNTIFG  172 (247)
Q Consensus       162 ~L~l~~n~l~~  172 (247)
                      +|++++|++++
T Consensus       176 ~L~ls~N~i~~  186 (199)
T d2omxa2         176 RLDISSNKVSD  186 (199)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCCCCC
Confidence            99999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=1.6e-15  Score=122.16  Aligned_cols=92  Identities=23%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      ++++|++++++++ .+|+.   .++|++|++++|+++ .+|+.    +.+|+.|++.+|.++ .++.   -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~---lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSD---LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCS---CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhh---hccccccccc
Confidence            4788899888887 46653   457888888888888 77764    346777788877776 3332   1235777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCC
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNN  110 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n  110 (247)
                      ++|.+. .+|..  ..+++|+.+++.++
T Consensus       106 ~~n~l~-~lp~~--~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         106 SNNQLE-KLPEL--QNSSFLKIIDVDNN  130 (353)
T ss_dssp             CSSCCS-SCCCC--TTCTTCCEEECCSS
T ss_pred             cccccc-cccch--hhhccceeeccccc
Confidence            777776 66642  24667777777666

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5.9e-16  Score=115.50  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=20.5

Q ss_pred             CCceEeccCCeeeecCCccccCCCchhhh
Q 044683          211 RPRRLAVEGFDLVLELPQIVCGLPTCFAL  239 (247)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  239 (247)
                      +|++|++++|++++ + +.++++++|+.|
T Consensus       173 ~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         173 TLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             CCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            89999999999885 3 357777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.7e-15  Score=113.86  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=131.0

Q ss_pred             ccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683            9 ASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus         9 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      +..+.+++..+.  ..+..+++|+++++.++ .++. +. .+++|++|++++|.++. ++ .++.+++|++|++++|+++
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~-l~-~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh-Hh-hCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence            444555544332  34678999999999998 5553 44 48999999999999985 44 3678999999999999998


Q ss_pred             ccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCC
Q 044683           89 GEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN  168 (247)
Q Consensus        89 ~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  168 (247)
                       .++.  +..+++|+.+++.+|.+..            ...+..++.++.+++++|.+++.  ..+..+++|+++++++|
T Consensus       104 -~l~~--l~~l~~L~~L~l~~~~~~~------------~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         104 -DLSS--LKDLKKLKSLSLEHNGISD------------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             -CGGG--GTTCTTCCEEECTTSCCCC------------CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             -cccc--ccccccccccccccccccc------------ccccccccccccccccccccccc--ccccccccccccccccc
Confidence             6764  4458888888877776542            23477788999999999999843  35678999999999999


Q ss_pred             cCcCCCC-CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccC
Q 044683          169 TIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEG  219 (247)
Q Consensus       169 ~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~  219 (247)
                      ++++..+ ..+.....|++++|++++ ++.          +..  +|+.|++++
T Consensus       167 ~l~~i~~l~~l~~L~~L~Ls~N~i~~-l~~----------l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         167 QISDIVPLAGLTKLQNLYLSKNHISD-LRA----------LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCB-CGG----------GTTCTTCSEEEEEE
T ss_pred             cccccccccCCCCCCEEECCCCCCCC-Chh----------hcCCCCCCEEEccC
Confidence            9985433 122344499999999975 221          333  899999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-16  Score=112.28  Aligned_cols=131  Identities=24%  Similarity=0.239  Sum_probs=102.9

Q ss_pred             cccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCC
Q 044683           21 NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF  100 (247)
Q Consensus        21 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  100 (247)
                      .+.++..+++|++++|+|+ .++.. +..+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++..++..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCcccccccc
Confidence            4567778999999999998 77754 4448899999999999984 33 4788999999999999998 77777776788


Q ss_pred             CccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEc
Q 044683          101 SLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDL  165 (247)
Q Consensus       101 ~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l  165 (247)
                      +|+.+++++|.++.+.         ....+..+++|+++++++|.++...   +..+..+++|+.||-
T Consensus        88 ~L~~L~L~~N~i~~~~---------~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccc---------cccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9998888887766321         1245778899999999999997432   235778999998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=4.5e-15  Score=101.98  Aligned_cols=101  Identities=28%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683            5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH   84 (247)
Q Consensus         5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   84 (247)
                      |+|++++|.++ ..+ .+..++.|++|++++|.++ .+|+.+.. +++|++|++++|.++. +| .++.+++|+++++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~-l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhh-hhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            45666666666 333 3566666666666666666 56655544 6666666666666663 33 356666666666666


Q ss_pred             CcccccCch-hHhhcCCCccEEEccCCCc
Q 044683           85 NQLTGEIPE-RMATGCFSLEILALSNNSL  112 (247)
Q Consensus        85 n~~~~~~~~-~~~~~~~~L~~l~l~~n~l  112 (247)
                      |+++ .++. ..+..+++|+.+++++|.+
T Consensus        75 N~i~-~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          75 NRLQ-QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCC-SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CccC-CCCCchhhcCCCCCCEEECCCCcC
Confidence            6665 3332 1222344444444444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=119.11  Aligned_cols=200  Identities=16%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC-cccccCchhHhhcCCCcc
Q 044683           25 LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN-QLTGEIPERMATGCFSLE  103 (247)
Q Consensus        25 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~  103 (247)
                      ..+|++|+++++.+++.....++..+++|++|++.++.++...+..++.+++|++|+++++ .+++..-..+...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4567777777776664433444455677777777777776656666777777777777774 344222223344567777


Q ss_pred             EEEccCC-----------------CccEEEccCC--cCCCC-CchhhhcccCcCeeeCcCC-cccccCchhhhCCCCCCE
Q 044683          104 ILALSNN-----------------SLQGLYLSDN--RLFGR-IPRWLGNLLALEDIMMPNN-NLQGPIPIEFCQLELLTI  162 (247)
Q Consensus       104 ~l~l~~n-----------------~l~~l~l~~n--~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~  162 (247)
                      +++++++                 .++.++++++  .+++. +......+++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            7777764                 2446666653  23322 2223356788999999886 466666677788889999


Q ss_pred             EEccCC-cCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCC
Q 044683          163 LDLSNN-TIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLP  234 (247)
Q Consensus       163 L~l~~n-~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  234 (247)
                      |+++++ .+++.....+.   ....|+++++ ++...        ++. +...+..|++..+++++..++.++..+
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~--------l~~-l~~~lp~L~i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT--------LQL-LKEALPHLQINCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC--------HHH-HHHHSTTSEESCCCSCCTTCSSCSSTT
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHH--------HHH-HHHhCccccccCccCCCCCCCccCccc
Confidence            999884 56644333332   2337888776 22110        000 111455566777788877676666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=108.70  Aligned_cols=128  Identities=14%  Similarity=0.062  Sum_probs=100.1

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ..+++|++++|.|+. ++..+..+++|++|++++|.++ .++. +. .+++|++|++++|.++...+..+..+++|++|+
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~~-~~-~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDG-FP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EECC-CC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccCC-cc-cCcchhhhhcccccccCCCccccccccccccce
Confidence            468999999999994 5677788999999999999998 6653 43 489999999999999966566677899999999


Q ss_pred             ccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeC
Q 044683           82 ISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMM  141 (247)
Q Consensus        82 l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  141 (247)
                      +++|.++ .++. ..+..+++|+.+++.+|.++.+       .+.-+..+..+++|++||-
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~-------~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-------KHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-------TTHHHHHHHHCTTCSEETT
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccccc-------cchHHHHHHHCCCcCeeCC
Confidence            9999998 5554 3455688888888877776522       1111335778899998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=9e-15  Score=100.45  Aligned_cols=119  Identities=24%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683           29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS  108 (247)
Q Consensus        29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~  108 (247)
                      |+|++++|+++ .++. +.. +++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|.  +..+++|+.++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~-l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCcc-ccc-CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECC
Confidence            57888888887 6664 444 788888888888887 56777888888888888888887 6654  3447777766666


Q ss_pred             CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc---CchhhhCCCCCCEE
Q 044683          109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP---IPIEFCQLELLTIL  163 (247)
Q Consensus       109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L  163 (247)
                      +|.++.+         .....+..+++|+++++++|++++.   .......+|+|+.+
T Consensus        74 ~N~i~~~---------~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQS---------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSS---------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCC---------CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6655422         1124566777888888888877632   12334446666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.2e-15  Score=115.87  Aligned_cols=193  Identities=16%  Similarity=0.133  Sum_probs=137.8

Q ss_pred             CCCcEEEccCCccccc-cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-ccccC-ChHhhhcCCCCC
Q 044683            2 TSLKVLDASSNQLTGN-ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNGS-IPSSFFDMKMLK   78 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~   78 (247)
                      ..|++||++++.++.. ....+..+++|++|+++++.+++..+..+.. +++|++|+++++ .++.. +......+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhcc
Confidence            4689999999988754 3455678899999999999988766677765 789999999986 55532 122345689999


Q ss_pred             EEeccCC-ccccc-CchhHhhcCCCccEEEccCC-----------------CccEEEccCC-cCCCCCchhhhcccCcCe
Q 044683           79 SLDISHN-QLTGE-IPERMATGCFSLEILALSNN-----------------SLQGLYLSDN-RLFGRIPRWLGNLLALED  138 (247)
Q Consensus        79 ~L~l~~n-~~~~~-~~~~~~~~~~~L~~l~l~~n-----------------~l~~l~l~~n-~~~~~~~~~~~~~~~L~~  138 (247)
                      +|+++++ .+++. +...+....++|+.++++++                 +++.|++++| .+++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            9999986 34321 22233344578999998764                 4669999886 477777788889999999


Q ss_pred             eeCcCC-cccccCchhhhCCCCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCC
Q 044683          139 IMMPNN-NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPC  196 (247)
Q Consensus       139 L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~  196 (247)
                      |++++| .+++.....++.+++|+.|+++++ ++...-..+ .....|++..+++++..+
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~~~  263 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIAR  263 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCCCC
Confidence            999996 677665667888999999999887 432211111 122356667777775543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=5.3e-13  Score=107.09  Aligned_cols=209  Identities=24%  Similarity=0.245  Sum_probs=130.4

Q ss_pred             CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683            2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD   81 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   81 (247)
                      ++|++|++++|.|+ .+|..+   .+|+.|++++|.++ .++.-    .+.|++|++++|.++ .+|. ++.+++|++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l----p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID  126 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh----ccccccccccccccc-cccc-hhhhccceeec
Confidence            57999999999998 667553   57889999999887 66531    346999999999988 4554 57788999999


Q ss_pred             ccCCcccccCchhH------------------hhcCCCccEEEccCCC--------------------------------
Q 044683           82 ISHNQLTGEIPERM------------------ATGCFSLEILALSNNS--------------------------------  111 (247)
Q Consensus        82 l~~n~~~~~~~~~~------------------~~~~~~L~~l~l~~n~--------------------------------  111 (247)
                      ++++.+. ..+...                  ...++.++.+.+.+|.                                
T Consensus       127 l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  205 (353)
T d1jl5a_         127 VDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF  205 (353)
T ss_dssp             CCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred             ccccccc-ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc
Confidence            9888765 222210                  1123445555555442                                


Q ss_pred             ccEEEccCCcCCCCCchhh-----------------hcccCcCeeeCcCCcccc----------------cCchhhhCCC
Q 044683          112 LQGLYLSDNRLFGRIPRWL-----------------GNLLALEDIMMPNNNLQG----------------PIPIEFCQLE  158 (247)
Q Consensus       112 l~~l~l~~n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~~~~----------------~~~~~l~~~~  158 (247)
                      ++.+++++|.... ++...                 .....+...++..+.+.+                .+......++
T Consensus       206 L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T d1jl5a_         206 LTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP  284 (353)
T ss_dssp             CCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCC
Confidence            1234444333221 11100                 001112222222221111                0111123357


Q ss_pred             CCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCch
Q 044683          159 LLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTC  236 (247)
Q Consensus       159 ~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  236 (247)
                      +|++|++++|+++ .+|..+.....|++++|+++. +|..         .. +|++|++++|+++ .+|.....+..|
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~L~~-l~~~---------~~-~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPALPPRLERLIASFNHLAE-VPEL---------PQ-NLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCCC---------CT-TCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CCCEEECCCCccC-ccccccCCCCEEECCCCcCCc-cccc---------cC-CCCEEECcCCcCC-CCCccccccCee
Confidence            9999999999998 667777777799999999984 3321         12 8999999999998 567655555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.8e-14  Score=116.23  Aligned_cols=218  Identities=16%  Similarity=0.095  Sum_probs=146.3

Q ss_pred             CCCcEEEccCCcccccc----CccccCCCCCcEEEccCCcee---ecCCchh---h---hhcccccEEEccCCccccCC-
Q 044683            2 TSLKVLDASSNQLTGNI----SPNLCELVLLRELYIDNNDLR---GHIPVEI---G---TYLLVFIHLNLSRNAFNGSI-   67 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~---~~~~~~~---~---~~l~~L~~L~l~~n~l~~~~-   67 (247)
                      .++++|++++|.+....    ...+...+.++.+.++++...   ...+..+   +   ...++|++|++++|.++... 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            56899999999886543    344566789999999877543   1112111   1   12567999999999887543 


Q ss_pred             ---hHhhhcCCCCCEEeccCCcccccCchh------------HhhcCCCccEEEccCCC------------------ccE
Q 044683           68 ---PSSFFDMKMLKSLDISHNQLTGEIPER------------MATGCFSLEILALSNNS------------------LQG  114 (247)
Q Consensus        68 ---~~~~~~l~~L~~L~l~~n~~~~~~~~~------------~~~~~~~L~~l~l~~n~------------------l~~  114 (247)
                         ...+...++|++|++++|.+.......            .....+.++.+.+++|.                  +++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence               334456789999999999875211111            11246788899888873                  448


Q ss_pred             EEccCCcCCCC-----CchhhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCC----CCC---
Q 044683          115 LYLSDNRLFGR-----IPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLP----SCF---  178 (247)
Q Consensus       115 l~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~---  178 (247)
                      +++++|.++..     +...+...++|++|++++|.++..    +...+..+++|++|++++|.+++...    ..+   
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            89999888742     233456778899999999988632    34567788999999999999874311    111   


Q ss_pred             --CCCCeEeccCCcccccCCCcceeeeecchhc--C-CCceEeccCCeeee
Q 044683          179 --RTSSFVKKQDRRTVGKPCGSLGLDILPHLFR--R-RPRRLAVEGFDLVL  224 (247)
Q Consensus       179 --~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~--~-~L~~L~l~~n~l~~  224 (247)
                        .....|++++|.++......     +...+.  . .|++|++++|.+..
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~-----l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRT-----LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHH-----HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCCCCCEEECCCCcCChHHHHH-----HHHHHHccCCCCCEEECCCCcCCC
Confidence              22338999999887432111     223332  1 79999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-15  Score=125.74  Aligned_cols=87  Identities=23%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             CCCcEEEccCCccccc----cCccccCCCCCcEEEccCCceeecCCchhhhh----cccccEEEccCCccccC----ChH
Q 044683            2 TSLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGS----IPS   69 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~----~~~   69 (247)
                      ++++.|+|++|.++..    ++..+..+++|++|++++|.+++.....+...    ..+|++|++++|.++..    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            4566666666666532    23344556667777777666652211122211    23566777776666532    233


Q ss_pred             hhhcCCCCCEEeccCCccc
Q 044683           70 SFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus        70 ~~~~l~~L~~L~l~~n~~~   88 (247)
                      ++..+++|++|++++|.+.
T Consensus       107 ~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCH
T ss_pred             hhhccccccccccccccch
Confidence            4455666777777666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=2.7e-15  Score=111.66  Aligned_cols=131  Identities=24%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhh
Q 044683           18 ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMAT   97 (247)
Q Consensus        18 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   97 (247)
                      .+..+..+++|++|++++|.|+ .++ .+.. +++|++|++++|.++ .++..+..+++|++|++++|.++ .++.  +.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~-l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~--~~  112 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG--IE  112 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHH-HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHH--HH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccC-CccccChhhcccccc-ccccccccccccccccccccccc-cccc--cc
Confidence            3455666777777777777776 554 3433 677777777777776 34444444556777777777776 4432  22


Q ss_pred             cCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCch----------hhhCCCCCCEEE
Q 044683           98 GCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI----------EFCQLELLTILD  164 (247)
Q Consensus        98 ~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------~l~~~~~L~~L~  164 (247)
                      .+++|+.+++++|.++.+.         ....+..+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~---------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWG---------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHH---------HHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhcccc---------ccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3556665555554443210         013456677777777777766533221          145567777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.6e-13  Score=95.48  Aligned_cols=105  Identities=25%  Similarity=0.278  Sum_probs=67.4

Q ss_pred             CcEEEccCCccccccCccccCCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683            4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI   82 (247)
Q Consensus         4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   82 (247)
                      .+.++.+++.+. ..|..+..++++++|++++++ ++ .++...+.++++|+.|++++|+++...+.+|..+++|++|++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            345666666666 445666667777777776553 66 566555555777777777777777666666777777777777


Q ss_pred             cCCcccccCchhHhhcCCCccEEEccCCCc
Q 044683           83 SHNQLTGEIPERMATGCFSLEILALSNNSL  112 (247)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l  112 (247)
                      ++|+++ .+|.+++. ..+++.+++++|.+
T Consensus        88 s~N~l~-~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALE-SLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCS-CCCSTTTC-SCCCCEEECCSSCC
T ss_pred             cCCCCc-ccChhhhc-cccccccccCCCcc
Confidence            777776 66666654 33455554444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.5e-14  Score=116.23  Aligned_cols=109  Identities=19%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             CCcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhh---hhcccccEEEccCCccccCChHhhh-----c
Q 044683            3 SLKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIG---TYLLVFIHLNLSRNAFNGSIPSSFF-----D   73 (247)
Q Consensus         3 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~-----~   73 (247)
                      +|+.||++++.+++.. ...+..++++++|++++|.++......++   ...++|++|++++|.++......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788899998887643 34455678888999999887732222221   2367899999998888632222222     1


Q ss_pred             CCCCCEEeccCCcccccCch---hHhhcCCCccEEEccCCC
Q 044683           74 MKMLKSLDISHNQLTGEIPE---RMATGCFSLEILALSNNS  111 (247)
Q Consensus        74 l~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~l~l~~n~  111 (247)
                      ..+|++|++++|.+++..-.   ..+...++|+.+++++|.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            24789999998888632111   123347788999888873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=7.7e-15  Score=109.13  Aligned_cols=138  Identities=23%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683            1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL   80 (247)
Q Consensus         1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   80 (247)
                      +++|++|++++|.|+. ++ .+..+++|+.|++++|.++ .++..... +++|++|++++|.++. + ..+..+++|++|
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-L-SGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCC-H-HHHHHHHHSSEE
T ss_pred             ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc-cccccccccccccccc-c-cccccccccccc
Confidence            5689999999999984 43 5889999999999999998 78765443 6789999999999984 3 457889999999


Q ss_pred             eccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc
Q 044683           81 DISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        81 ~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      ++++|.++ .++. ..+..+++|+.+++++|.++......+.........+..+++|+.||  +..++
T Consensus       121 ~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            99999998 5554 34566899999998888776433222111100112356788999886  44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.1e-12  Score=89.53  Aligned_cols=110  Identities=15%  Similarity=0.062  Sum_probs=63.4

Q ss_pred             CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-ccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCc
Q 044683           24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSL  102 (247)
Q Consensus        24 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  102 (247)
                      .+...+.++.+++.+. .+|..+.. +++|++|++.+| .++...+.+|..+++|+.|++++|+++ .++...|..+++|
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~-l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L   82 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL   82 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccC-ccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccc
Confidence            3344455666666666 56666544 566777777544 466555556666777777777777776 5655555556666


Q ss_pred             cEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc
Q 044683          103 EILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus       103 ~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      +.+++++|+++++           +........++.|++++|.+.
T Consensus        83 ~~L~Ls~N~l~~l-----------~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALESL-----------SWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCSCC-----------CSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCccc-----------ChhhhccccccccccCCCccc
Confidence            6555555554422           222222234666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=7e-12  Score=100.71  Aligned_cols=192  Identities=17%  Similarity=0.096  Sum_probs=112.1

Q ss_pred             CCCcEEEccCCccccc----------cCccccCCCCCcEEEccCCceeecCCchhh---hhcccccEEEccCCccccCCh
Q 044683            2 TSLKVLDASSNQLTGN----------ISPNLCELVLLRELYIDNNDLRGHIPVEIG---TYLLVFIHLNLSRNAFNGSIP   68 (247)
Q Consensus         2 ~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~   68 (247)
                      ++|+.++++++.....          +...+..+++|+.|++++|.+.+.....+.   ...++|++|++++|.++....
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            4566777766543211          123344566777777777766532222221   124567777777776542111


Q ss_pred             Hh-------------hhcCCCCCEEeccCCcccccCchh---HhhcCCCccEEEccCCC-------------------cc
Q 044683           69 SS-------------FFDMKMLKSLDISHNQLTGEIPER---MATGCFSLEILALSNNS-------------------LQ  113 (247)
Q Consensus        69 ~~-------------~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~l~l~~n~-------------------l~  113 (247)
                      ..             ....+.|+.+.+++|.+.......   .....+.++.+++++|.                   ++
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~  218 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  218 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhc
Confidence            11             123456667777666654211111   12235567777766663                   33


Q ss_pred             EEEccCCcCCCC----CchhhhcccCcCeeeCcCCcccccC----chhhhC--CCCCCEEEccCCcCcCC----CCCC--
Q 044683          114 GLYLSDNRLFGR----IPRWLGNLLALEDIMMPNNNLQGPI----PIEFCQ--LELLTILDLSNNTIFGT----LPSC--  177 (247)
Q Consensus       114 ~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~--~~~L~~L~l~~n~l~~~----~~~~--  177 (247)
                      .|++++|.++..    +...+..+++|++|++++|.+++..    ...+..  .+.|++|++++|.|+..    +...  
T Consensus       219 ~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~  298 (344)
T d2ca6a1         219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  298 (344)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHH
Confidence            677777776542    3455678899999999999998542    334443  46799999999998742    1121  


Q ss_pred             --CCCCCeEeccCCcccc
Q 044683          178 --FRTSSFVKKQDRRTVG  193 (247)
Q Consensus       178 --~~~~~~L~l~~n~~~~  193 (247)
                        .....+|++++|.+..
T Consensus       299 ~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         299 EKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHCTTCCEEECTTSBSCT
T ss_pred             ccCCCCCEEECCCCcCCC
Confidence              2234489999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-08  Score=71.42  Aligned_cols=88  Identities=24%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             CChHhhhcCCCCCEEeccCCcccccCch--hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcC
Q 044683           66 SIPSSFFDMKMLKSLDISHNQLTGEIPE--RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN  143 (247)
Q Consensus        66 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  143 (247)
                      .++..+..++.|++|++++|+++ .++.  ..+..+++|+.|++++|.++.+          .+-..-....++.+++++
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l----------~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSE----------RELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCG----------GGHHHHTTCCCSSCCCTT
T ss_pred             hhHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccc----------hhhhhhhccccceeecCC
Confidence            34445556778888888888877 4432  2334467777666555555422          121222344678888888


Q ss_pred             CcccccCc-------hhhhCCCCCCEEE
Q 044683          144 NNLQGPIP-------IEFCQLELLTILD  164 (247)
Q Consensus       144 n~~~~~~~-------~~l~~~~~L~~L~  164 (247)
                      |.+.....       ..+..+|+|+.||
T Consensus       125 Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         125 NSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             STTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            88874432       3356788888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.6e-08  Score=69.41  Aligned_cols=86  Identities=20%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             ccccCCCCCcEEEccCCceeecCCc--hhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCch----
Q 044683           20 PNLCELVLLRELYIDNNDLRGHIPV--EIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE----   93 (247)
Q Consensus        20 ~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----   93 (247)
                      ..+..++.|++|++++|+++ .++.  ..+..+++|+.|++++|.++...+..+....+|+.+++++|.+.+....    
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            33456899999999999998 5543  3344589999999999999854443455667899999999998743331    


Q ss_pred             --hHhhcCCCccEEE
Q 044683           94 --RMATGCFSLEILA  106 (247)
Q Consensus        94 --~~~~~~~~L~~l~  106 (247)
                        .++..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              3455689999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.02  E-value=2.9e-06  Score=60.08  Aligned_cols=64  Identities=17%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             CCCCcEEEccCC-ceeecCCchhhhh---cccccEEEccCCcccc----CChHhhhcCCCCCEEeccCCccc
Q 044683           25 LVLLRELYIDNN-DLRGHIPVEIGTY---LLVFIHLNLSRNAFNG----SIPSSFFDMKMLKSLDISHNQLT   88 (247)
Q Consensus        25 l~~L~~L~l~~n-~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~   88 (247)
                      .+.|++|+++++ .++...-..++..   .++|++|++++|.++.    .+...+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            455666666653 3432211122211   2446666666666652    22333444566777777777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=3.1e-06  Score=59.95  Aligned_cols=111  Identities=11%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             hcccccEEEccCC-ccccC----ChHhhhcCCCCCEEeccCCcccccCchhH---hhcCCCccEEEccCCCccEEEccCC
Q 044683           49 YLLVFIHLNLSRN-AFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPERM---ATGCFSLEILALSNNSLQGLYLSDN  120 (247)
Q Consensus        49 ~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~l~l~~n~l~~l~l~~n  120 (247)
                      ..++|++|+++++ .++..    +..++...+.|++|++++|.+.......+   ....+.|+.++          +++|
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~----------L~~n   82 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN----------VESN   82 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE----------CCSS
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhccccccee----------eehh
Confidence            3577888998864 45432    23345566788888888887762211111   11234444444          4444


Q ss_pred             cCCCC----CchhhhcccCcCeeeCcCCcccc-------cCchhhhCCCCCCEEEccCCc
Q 044683          121 RLFGR----IPRWLGNLLALEDIMMPNNNLQG-------PIPIEFCQLELLTILDLSNNT  169 (247)
Q Consensus       121 ~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~l~~~~~L~~L~l~~n~  169 (247)
                      .+++.    +...+...+.|++|++++|.+..       .+...+...++|+.|+++.+.
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            44322    23345556678888887775441       134555667777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=3e-05  Score=54.55  Aligned_cols=40  Identities=13%  Similarity=0.062  Sum_probs=19.6

Q ss_pred             hhcccCcCeeeC--cCCcccc----cCchhhhCCCCCCEEEccCCc
Q 044683          130 LGNLLALEDIMM--PNNNLQG----PIPIEFCQLELLTILDLSNNT  169 (247)
Q Consensus       130 ~~~~~~L~~L~l--~~n~~~~----~~~~~l~~~~~L~~L~l~~n~  169 (247)
                      +...++++.+++  ++|.+..    .+.+.+...+.|+.|++..+.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            344455554333  3444432    233445556666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=4.4e-05  Score=53.64  Aligned_cols=117  Identities=15%  Similarity=0.029  Sum_probs=65.6

Q ss_pred             cCCCCCcEEEccC-CceeecCCchhhh---hcccccEEEccCCccccC----ChHhhhcCCCCCEEeccCCcccccCchh
Q 044683           23 CELVLLRELYIDN-NDLRGHIPVEIGT---YLLVFIHLNLSRNAFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPER   94 (247)
Q Consensus        23 ~~l~~L~~L~l~~-n~i~~~~~~~~~~---~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~   94 (247)
                      .+.+.|++|++++ +.++...-..++.   ..++|++|++++|.++..    +...+...++++.++++++.+.+.....
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4457777787776 4455322222222   245678888888877542    2334455677888888887765322222


Q ss_pred             Hh---hcCCCccEEEccCCCccEEEccCCcCCC----CCchhhhcccCcCeeeCcCCccc
Q 044683           95 MA---TGCFSLEILALSNNSLQGLYLSDNRLFG----RIPRWLGNLLALEDIMMPNNNLQ  147 (247)
Q Consensus        95 ~~---~~~~~L~~l~l~~n~l~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~  147 (247)
                      +.   ...++++.++        |++..|.+..    .+...+...+.|+.|++..+...
T Consensus        94 l~~~l~~~~~L~~l~--------L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEALQSNTSLIELR--------IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGGGGCSSCCEEE--------CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCccccEEe--------eccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            22   2234455443        2333444443    23445667788888888776543