Citrus Sinensis ID: 044686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
QHKNTKHLQNPRASLENMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHcccccccccccccHHH
Coil and Loop (DISEMBL)
qhkntkhlqnpraslenMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAyltgeakpsracctgveylkdntpttaDRQAACKCIKDAATRYRGikldkarqlpkecgvdigvpitpdidcsk
Flexible Loop (DISEMBL)
qhkntkhlqnpraslenmKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLkdntpttadrqAACKCIKDAATRYRgikldkarqlpkecgvdigvpitpdidcsk
Low Complexity Region (SEG)
QHKNTKHLQNPRASLENMKAGvvlavilmaaivmvERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK
Disordered region (IsUnstruct)
******************KAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITP******
Disordered Region (DISOPRED)
*******************AGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCS*
Disordered Region (DISEMBL)
***********RASLENMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK
Disordered Region (DISPRO)
******HLQNPRASLENMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPD*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
QHKNTKHLQNPRASLENMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P10973	92	Non-specific lipid-transf	N/A	no	0.669	0.945	0.556	3e-21
Q43766	118	Non-specific lipid-transf	N/A	no	0.823	0.906	0.444	7e-21
P86137	92	Non-specific lipid-transf	N/A	no	0.684	0.967	0.560	1e-20
P85206	92	Non-specific lipid-transf	N/A	no	0.676	0.956	0.555	4e-20
A2ZAT0	118	Non-specific lipid-transf	N/A	no	0.707	0.779	0.478	4e-20
Q7XJ39	118	Non-specific lipid-transf	no	no	0.707	0.779	0.478	4e-20
Q2QYL2	117	Non-specific lipid-transf	no	no	0.7	0.777	0.483	5e-20
Q43194	122	Non-specific lipid-transf	N/A	no	0.707	0.754	0.483	1e-19
Q43748	117	Non-specific lipid-transf	N/A	no	0.869	0.965	0.427	1e-19
Q0IQK9	116	Non-specific lipid-transf	no	no	0.684	0.767	0.494	2e-19

>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 42  ITCGQVDSFLAPCLAYLTGE-AKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           + CGQV+S LA C+ +LTG  A PS +CC GV+ LK   PT+ADR+AAC+CIK AA R+ 
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDC 128
            IK D A  LPK+CGVDI +PI+   +C
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Ricinus communis (taxid: 3988)

>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 24  LAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGE-AKPSRACCTGVEYLKDNTPTT 82
           L ++ M A +++    AAI+CGQV S L+PC++Y  G  AKP  ACC+GV+ L     +T
Sbjct: 9   LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQST 68

Query: 83  ADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           AD+QAAC+C+K  AT  +GI + K   +P +CGV +  PI+   DC+K
Sbjct: 69  ADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNK 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|P86137|NLTP1_ACTDE Non-specific lipid-transfer protein 1 OS=Actinidia deliciosa PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 41  AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTA-DRQAACKCIKDAATRY 99
           A++CGQVD+ L PCL YLT    PS  CC+GV  LK  T T   DRQAAC C+K AA RY
Sbjct: 1   AVSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARY 60

Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +GIK D A  L ++CGV + VPI+   DCSK
Sbjct: 61  QGIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|P85206|NLTP2_ACTDE Non-specific lipid-transfer protein 2 OS=Actinidia deliciosa PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTA-DRQAACKCIKDAATRYR 100
           ++CGQVD+ L PCL YLT    PS  CC+GV  LK  T T   DRQAAC C+K AA RY+
Sbjct: 2   VSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARYQ 61

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           GIK D A  L ++CGV + VPI+   DCSK
Sbjct: 62  GIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|A2ZAT0|NLTP2_ORYSI Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 58/92 (63%)

Query: 39  QAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
            AAI+CGQV+S ++PCL+Y  G + PS ACC+GV  L     TTADR+ AC C+K+ A  
Sbjct: 25  MAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGS 84

Query: 99  YRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
             G+    A  +P +CGV I   I+P IDCS 
Sbjct: 85  ISGLNAGNAASIPSKCGVSIPYTISPSIDCSS 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XJ39|NLT2A_ORYSJ Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 58/92 (63%)

Query: 39  QAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
            AAI+CGQV+S ++PCL+Y  G + PS ACC+GV  L     TTADR+ AC C+K+ A  
Sbjct: 25  MAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGS 84

Query: 99  YRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
             G+    A  +P +CGV I   I+P IDCS 
Sbjct: 85  ISGLNAGNAASIPSKCGVSIPYTISPSIDCSS 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QYL2|NLT2B_ORYSJ Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query: 40  AAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
           AAI+CGQV+S ++PCL+Y  G + PS ACC+GV  L     TTADR+ AC C+K+ A   
Sbjct: 25  AAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSI 84

Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            G+    A  +P +CGV I   I+P IDCS 
Sbjct: 85  SGLNAGNAASIPSKCGVSIPYTISPSIDCSS 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q43194|NLTP2_SORBI Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 39  QAAITCGQVDSFLAPCLAYLTGEAK-PSRACCTGVEYLKDNTPTTADRQAACKCIKDAAT 97
           +AA+TCGQV S + PCL+Y  G+   PS  CC+GV  L     TTADR+AAC C+K+AA 
Sbjct: 28  EAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAAR 87

Query: 98  RYRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
             RG+ + KA  +P +CGV I   I+   DCS+
Sbjct: 88  GIRGLNVGKAASIPSKCGVSIPYTISTSTDCSR 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

>sp|Q43748|NLTP_BETVU Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 4/117 (3%)

Query: 13  ASLENMKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGV 72
           AS   +K    L + +M A  + E    AITCG V S LAPC+ YL G   PS ACC G+
Sbjct: 2   ASSAFVKFTCALVMCMMVAAPLAE----AITCGLVASKLAPCIGYLQGAPGPSAACCGGI 57

Query: 73  EYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
           + L     + ADR+ AC C+K AAT  +GI   KA  LP++CGV +   I+P+ +C+
Sbjct: 58  KSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCN 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Also has fungicide activity.

Beta vulgaris (taxid: 161934)

>sp|Q0IQK9|NLTP1_ORYSJ Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           ITCGQV+S + PCL Y  G A PS ACC+GV  LK    TTADR+ AC C+K+AA   +G
Sbjct: 26  ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85

Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +    A  +P +CGV +   I+  IDCS+
Sbjct: 86  LNAGNAASIPSKCGVSVPYTISASIDCSR 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255541060	113	Nonspecific lipid-transfer protein A, pu	0.830	0.955	0.513	1e-22
255541064	115	Nonspecific lipid-transfer protein A, pu	0.846	0.956	0.508	2e-22
359488913	115	PREDICTED: non-specific lipid-transfer p	0.830	0.939	0.504	2e-21
147833360	113	hypothetical protein VITISV_020613 [Viti	0.830	0.955	0.504	3e-21
225446753	116	PREDICTED: non-specific lipid-transfer p	0.692	0.775	0.522	2e-20
56713111	117	type 1 non-specific lipid transfer prote	0.830	0.923	0.418	6e-20
326491303	117	predicted protein [Hordeum vulgare subsp	0.730	0.811	0.458	2e-19
16903206	120	lipid transfer protein precursor [Davidi	0.861	0.933	0.465	2e-19
128378	92	RecName: Full=Non-specific lipid-transfe	0.669	0.945	0.556	2e-19
115483847	118	Os11g0116000 [Oryza sativa Japonica Grou	0.707	0.779	0.489	3e-19

>gi|255541060|ref|XP_002511594.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548774|gb|EEF50263.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 21  GVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGE-AKPSRACCTGVEYLKDNT 79
           GVV++++++ AIV       A+ CGQV+S LA C+ +LTG  A PS +CC GV+ LK   
Sbjct: 3   GVVISMLVVLAIVQFVMPGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLA 62

Query: 80  PTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDC 128
           PT+ADR+AAC+CIK AA R+  IK D A  LPK+CGVDI +PI+   +C
Sbjct: 63  PTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541064|ref|XP_002511596.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548776|gb|EEF50265.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 2/112 (1%)

Query: 18  MKAGVVLAVILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGE-AKPSRACCTGVEYLK 76
           MK  V+  ++++A +  V  G+A + CGQV+S LA C+ +LTG  A PS +CC GV+ LK
Sbjct: 1   MKGAVISMLVVLAIVQFVMPGEA-VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLK 59

Query: 77  DNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDC 128
              PTTADR+AAC CIK AA R+  IK D A  LPK+CGVDI +PI+   +C
Sbjct: 60  TLAPTTADRRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488913|ref|XP_002283359.2| PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 3/111 (2%)

Query: 21  GVVLAVILMAAIV--MVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDN 78
           GVV+A+++  A+V  M E  +A ITC  V+  LAPC++YLTG   P+ ACC GV  LK  
Sbjct: 3   GVVIALLVALAMVHFMAEPARA-ITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKSL 61

Query: 79  TPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
           +PTT+DRQ AC+C KDAA+R   I+ D A  LP +CGV   +PI+   DCS
Sbjct: 62  SPTTSDRQTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833360|emb|CAN72931.1| hypothetical protein VITISV_020613 [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 3/111 (2%)

Query: 21  GVVLAVILMAAIV--MVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDN 78
           GVV+A+++  A+V  M E  +A ITC  V+  LAPC++YLTG   P+ ACC GV  LK  
Sbjct: 3   GVVIALLVALAMVHFMAEPARA-ITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKSL 61

Query: 79  TPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
           +PTT+DRQ AC+C KDAA+R   I+ D A  LP +CGV   +PI+   DCS
Sbjct: 62  SPTTSDRQTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446753|ref|XP_002282792.1| PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 65/90 (72%)

Query: 41  AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           A+TCGQV++ LAPC+ YLTG   P+  CC GV+ LK  TPTT DR+ AC+C+K AA++++
Sbjct: 25  AVTCGQVETSLAPCMPYLTGGGNPAAPCCNGVQNLKLLTPTTTDRRDACRCVKAAASKFQ 84

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            IK D A  LP +CGV IG+PI+   +C +
Sbjct: 85  NIKEDAASALPTKCGVQIGIPISMTTNCDQ 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56713111|emb|CAH04986.1| type 1 non-specific lipid transfer protein precursor [Triticum aestivum]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 23  VLAVI-LMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAK-PSRACCTGVEYLKDNTP 80
           +LAV  ++AA+ + E    A+TC  V S +APC++Y TG+A  PS  CC+GV  L     
Sbjct: 6   LLAVFTVLAALAVAEMASGAVTCSDVTSAIAPCMSYATGQASSPSAGCCSGVRTLNGKAS 65

Query: 81  TTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           T+ADRQAAC+C+K+ A  + GI +  A  +P +CGV +  PI   ++C+ 
Sbjct: 66  TSADRQAACRCLKNLAGSFNGISMGNAANIPGKCGVSVSFPINNSVNCNN 115

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326491303|dbj|BAK05751.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 36  ERGQAAITCGQVDSFLAPCLAYLTGEAK-PSRACCTGVEYLKDNTPTTADRQAACKCIKD 94
           E    A+TCG V S +APC++Y TG+A  PS  CC+GV  L     T ADRQAAC+C+K+
Sbjct: 20  EMASGAVTCGDVTSSIAPCMSYATGKASAPSAGCCSGVRSLNGKASTAADRQAACRCLKN 79

Query: 95  AATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            A  ++GI +  A  +P +CGV +  PI+  +DC+K
Sbjct: 80  LAGSFKGISMGNAAGIPGKCGVSVSFPISTSVDCNK 115

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16903206|gb|AAL27855.1| lipid transfer protein precursor [Davidia involucrata]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 4/116 (3%)

Query: 19  KAGVVLAV----ILMAAIVMVERGQAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEY 74
           ++GVV+ V    +LM  +V     +AAITCG V   LAPCL YL        ACC G++ 
Sbjct: 3   RSGVVIKVGIVAVLMCMVVSAPHAEAAITCGTVTVSLAPCLNYLKKGGPVPPACCNGIKS 62

Query: 75  LKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           L     TTADRQAAC C+K A+T   GI L  A  LP +CGV++   I+P  DCSK
Sbjct: 63  LNAAAKTTADRQAACNCLKTASTSIAGINLSYASSLPGKCGVNVPYKISPSTDCSK 118

Source: Davidia involucrata

Species: Davidia involucrata

Genus: Davidia

Family: Cornaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128378|sp|P10973.1|NLTPA_RICCO RecName: Full=Non-specific lipid-transfer protein A; Short=NS-LTP A; AltName: Full=Phospholipid transfer protein; Short=PLTP gi|224909|prf||1204170A protein,nonspecific lipid transfer

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 42  ITCGQVDSFLAPCLAYLTGE-AKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           + CGQV+S LA C+ +LTG  A PS +CC GV+ LK   PT+ADR+AAC+CIK AA R+ 
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDC 128
            IK D A  LPK+CGVDI +PI+   +C
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115483847|ref|NP_001065585.1| Os11g0116000 [Oryza sativa Japonica Group] gi|77548426|gb|ABA91223.1| Nonspecific lipid-transfer protein precursor, putative, expressed [Oryza sativa Japonica Group] gi|113644289|dbj|BAF27430.1| Os11g0116000 [Oryza sativa Japonica Group] gi|125575987|gb|EAZ17209.1| hypothetical protein OsJ_32721 [Oryza sativa Japonica Group] gi|215686518|dbj|BAG87779.1| unnamed protein product [Oryza sativa Japonica Group] gi|215706958|dbj|BAG93418.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765385|dbj|BAG87082.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%)

Query: 39  QAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
            AAITCGQV S +APC++Y+TG    ++ CC GV+ L +   TTADRQAAC+C+K  A  
Sbjct: 25  SAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGT 84

Query: 99  YRGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            + + L  A  +P +CGV++G PI+   DCSK
Sbjct: 85  IKSLNLGAAAGIPGKCGVNVGFPISLSTDCSK 116

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.684	0.747	0.494	1.2e-19
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.692	0.737	0.439	4.6e-18
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.661	0.945	0.444	2.6e-15
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.661	0.767	0.461	3.3e-15
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.676	0.765	0.445	8.8e-15
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.692	0.775	0.402	1.1e-14
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.615	0.650	0.445	1.4e-14
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.676	0.745	0.439	4.9e-14
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.692	0.756	0.4	6.2e-14
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.692	0.762	0.406	1.3e-13

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query:    41 AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
             AI C QV+ +LA CL YL     PS  CC G+  LK   P  ADRQ AC C+K  A    
Sbjct:    28 AIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIP 87

Query:   101 GIKLDKARQLPKECGVDIGVPITPDIDCS 129
             GI  D A+QLP +CGV+IGVP +  +DC+
Sbjct:    88 GINDDFAKQLPAKCGVNIGVPFSKTVDCN 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 40/91 (43%), Positives = 60/91 (65%)

Query:    40 AAITCGQVDSFLAPCLAYLTGEAKP-SRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
             AA++CGQVDS LAPC+AY+TG A   S+ CC+GV+ L     ++ DR+ AC+C+K  AT 
Sbjct:    29 AALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLATS 88

Query:    99 YRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
              + I + K   +P +CGV +  PI+   +C+
Sbjct:    89 IKSINMGKVSGVPGKCGVSVPFPISMSTNCN 119

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 40/90 (44%), Positives = 56/90 (62%)

Query:    42 ITCGQVDSFLAPCLAYLT--GEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
             +TCGQV   LA C+ +L   G   PS  CCTGV+ + +++ TTADR+A C C+K AA   
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58

Query:   100 RGIKLDKARQLPKECGVDIGVPITPDIDCS 129
             RGI  + A  LP +CGV+I   I+   +C+
Sbjct:    59 RGINPNNAEALPGKCGVNIPYKISTSTNCN 88

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%)

Query:    40 AAITCGQVDSFLAPCLAYLT-GEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
             AAITCG V S L+PCL YL+ G   P   CC GV+ L     TT DRQ AC+C++ AA  
Sbjct:    23 AAITCGTVASSLSPCLGYLSKGGVVPP-PCCAGVKKLNGMAQTTPDRQQACRCLQSAA-- 79

Query:    99 YRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
              +G+    A  LP +CGV I  PI+   +C+
Sbjct:    80 -KGVNPSLASGLPGKCGVSIPYPISTSTNCA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 41/92 (44%), Positives = 51/92 (55%)

Query:    40 AAITCGQVDSFLAPCLAYLT--GEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAAT 97
             AAI+CG V   LAPC  YL+  G   PS  CC GV+ L     TT DRQ AC+CI+  A 
Sbjct:    23 AAISCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTPDRQQACRCIQSTAK 80

Query:    98 RYRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
                G+    A  LP +CGV I  PI+   +C+
Sbjct:    81 SISGLNPSLASGLPGKCGVSIPYPISMSTNCN 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 37/92 (40%), Positives = 54/92 (58%)

Query:    39 QAAITCGQVDSFLAPCLAYLT-GEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAAT 97
             ++AI+C  V   L PC++YLT G   P   CC GV+ L   T T+AD++AAC+CIK  A 
Sbjct:    23 ESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVAN 82

Query:    98 RYRGIKLDKARQLPKECGVDIGVPITPDIDCS 129
                 +K + A+ L   CG  + V  +P +DC+
Sbjct:    83 SVT-VKPELAQALASNCGASLPVDASPTVDCT 113

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/83 (44%), Positives = 50/83 (60%)

Query:    39 QAAITCGQVDSFLAPCLAYLT--GEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAA 96
             +AA++CG+V+S L PC  YLT  G   P   CC GV  L     TT DR+ AC+CIK+AA
Sbjct:    24 KAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAA 83

Query:    97 TRYR-GIKLDKARQLPKECGVDI 118
                  G+  D+A  +P+ CG+ I
Sbjct:    84 RNVGPGLNADRAAGIPRRCGIKI 106

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/91 (43%), Positives = 53/91 (58%)

Query:    40 AAITCGQVDSFLAPCLAY-LTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
             AA++CG V+S LA C+ Y L G   P  ACC+GV+ L     TT DRQ AC CI+ AA  
Sbjct:    25 AALSCGSVNSNLAACIGYVLQGGVIPP-ACCSGVKNLNSIAKTTPDRQQACNCIQGAARA 83

Query:    99 Y-RGIKLDKARQLPKECGVDIGVPITPDIDC 128
                G+   +A  +PK CGV+I   I+   +C
Sbjct:    84 LGSGLNAGRAAGIPKACGVNIPYKISTSTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/90 (40%), Positives = 46/90 (51%)

Query:    39 QAAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATR 98
             ++ I CG V S LA CL YLT        CC GV+ L     TT DR+  C+C+K A   
Sbjct:    23 ESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKE 82

Query:    99 YRGIKLDKARQLPKECGVDIGVPITPDIDC 128
              +G+  D    LP  CGV I  PI+   +C
Sbjct:    83 IKGLNTDLVAALPTTCGVSIPYPISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/91 (40%), Positives = 53/91 (58%)

Query:    40 AAITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
             A ++CG V+  LA C+AYLT  A  ++ CC GV  LK+   TT DRQ AC+C++ AA   
Sbjct:    25 ALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAV 84

Query:   100 R-GIKLDKARQLPKECGVDIGVPITPDIDCS 129
               G+   +A  LP  C V+I   I+   +C+
Sbjct:    85 GPGLNTARAAGLPSACKVNIPYKISASTNCN 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V3C1	NLTPB_ARATH	No assigned EC number	0.4150	0.8153	0.8907	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020938001 RecName- Full=Non-specific lipid-transfer protein;; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (113 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	1e-33
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	5e-08
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	5e-07
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	1e-06
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	1e-04

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score =  112 bits (282), Expect = 1e-33
 Identities = 50/89 (56%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 42  ITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           I+CGQV S LAPCL YLTG    PS ACC+GV+ L     TTADRQAAC C+K AA    
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCS 129
           G+   +A  LP +CGV I  PI+P  DCS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 17/88 (19%)

Query: 44  CGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYR 100
           CGQV   LAPC  YL G    PS+ CC+ +  L          QA C+C  I+       
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL----------QAQCRCTAIRAIVLGIE 50

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDC 128
           GI    A  LP  C    GV +   IDC
Sbjct: 51  GINPQAAASLPSMC----GVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 51  LAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIK-LDKAR 108
           LAPCL+YLTG    P   CC+G++ +  + P     +  C  +        G+K   +A 
Sbjct: 1   LAPCLSYLTGGATAPPSDCCSGLKSVVKSDP-----KCLCAALNGPGASLLGLKNATRAL 55

Query: 109 QLPKECGV 116
            LP  CG+
Sbjct: 56  ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 23  VLAVILMAAIVMVERGQAAITCGQVDSFLAPCL--AYLTGEAKPSRACCTGVEYLKDNTP 80
           VLAV+L +A        +A +C      L PCL   Y+ G A PS ACC  ++       
Sbjct: 1   VLAVLLASAAAAPPAPASAASCADS---LLPCLGYCYVNGTAAPSPACCAALKAA----- 52

Query: 81  TTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDI 118
             AD    C  +        GI L +A  LPK CG+  
Sbjct: 53  VKADVPCLCDLVTSPLAAGFGINLTRAVALPKACGLTS 90

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 17/83 (20%)

Query: 44  CGQVDSFLAPCLAYLTG---EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           CGQV   LAPCL+YL G    A PS+ CC+ +  L           A C+C+   A    
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGL---------NSAQCRCLALRAAVLG 51

Query: 101 GIKLD-----KARQLPKECGVDI 118
            +++       A  LP  CGV  
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPP 74

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.92
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.5
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.35
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.31
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.28
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.84
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.83
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	93.28
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	91.11

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.92  E-value=8.5e-26  Score=152.54  Aligned_cols=88  Identities=57%  Similarity=1.039  Sum_probs=81.7

Q ss_pred             cCccccccCcccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV  120 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~  120 (130)
                      .+|..+...|.||++|++| +..|+++||++++++++.++++.|++..|+|+++....+++||++++++||++||++++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            3688999999999999998 568999999999999999999999999999998877777569999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          121 PITPDIDCS  129 (130)
Q Consensus       121 ~is~~~dC~  129 (130)
                      +|+++|||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.50  E-value=6.4e-15  Score=96.25  Aligned_cols=67  Identities=34%  Similarity=0.660  Sum_probs=53.7

Q ss_pred             ccccccCcccchhhhcCCC---CCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686           44 CGQVDSFLAPCLAYLTGEA---KPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV  120 (130)
Q Consensus        44 C~~~~~~L~pCl~yl~g~~---~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~  120 (130)
                      |+..+..|.||++|++++.   .|++.||++|+++        |+  .|+|.+.....++.||.++|.+||++||+++|.
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~   70 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DL--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP   70 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------Cc--CCEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence            5555678999999999743   5888999999985        22  499976554445569999999999999999875

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.35  E-value=7.6e-14  Score=94.02  Aligned_cols=71  Identities=32%  Similarity=0.811  Sum_probs=44.3

Q ss_pred             ccccCccccccCcccc---hhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccch-hccCCCCHHHHhhccc
Q 044686           39 QAAITCGQVDSFLAPC---LAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAA-TRYRGIKLDKARQLPK  112 (130)
Q Consensus        39 ~a~~~C~~~~~~L~pC---l~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~in~~~a~~LP~  112 (130)
                      ....+|..   +|.||   +.|+.++..|+++||++++++.+.       +..|+|  +++.. ..+ +||.+++..||+
T Consensus        17 ~~~~~c~~---~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~-------~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~   85 (96)
T PF14368_consen   17 ACCCSCAN---SLLPCCPCLCYVTGGPAPSAACCSALKSVVQA-------DPPCLCQLLNSPGAPGF-GINVTRALALPA   85 (96)
T ss_dssp             -BTTB-HC---CCCHH--HHHHHCC-----HHHHHHHCC-----------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHH
T ss_pred             CCcchhHH---HHhccccchhccCCCCCCCHHHHHHHHHhccC-------CCCCHHHhcCccccccC-CcCHHHHHHHHH
Confidence            34456654   46666   788887789999999999998532       356777  44433 344 799999999999


Q ss_pred             ccCCCCCC
Q 044686          113 ECGVDIGV  120 (130)
Q Consensus       113 ~Cgv~~p~  120 (130)
                      +||+++|+
T Consensus        86 ~Cg~~~~~   93 (96)
T PF14368_consen   86 ACGVPVPP   93 (96)
T ss_dssp             HCTSS-S-
T ss_pred             HcCCCCCC
Confidence            99999876

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.31  E-value=5.3e-13  Score=84.10  Aligned_cols=61  Identities=34%  Similarity=0.844  Sum_probs=46.0

Q ss_pred             cccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCC-CHHHHhhcccccCC
Q 044686           51 LAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGI-KLDKARQLPKECGV  116 (130)
Q Consensus        51 L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv  116 (130)
                      |.||++|++| +..|+++||++++++++.     |++..|.++++......++ |.+++..||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            6799999998 478999999999999753     3333333366544433345 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.28  E-value=1.5e-12  Score=83.96  Aligned_cols=58  Identities=33%  Similarity=0.749  Sum_probs=48.3

Q ss_pred             cCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee-ec-c-chhccCCCCHHHHhhcccccCCCCC
Q 044686           49 SFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC-IK-D-AATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        49 ~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C-l~-~-~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      ..|.+|++|++++.+||++||+.+|+           +..|+| ++ + .+..+  ||.++|++||++||+++|
T Consensus         4 ~~L~~C~~ai~~~~~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGGSPPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCCCCCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence            38999999999878999999999998           347999 33 3 33344  999999999999999985

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.84  E-value=1.7e-09  Score=69.12  Aligned_cols=68  Identities=43%  Similarity=0.795  Sum_probs=51.9

Q ss_pred             ccccccCcccchhhhcCC---CCCccccccchhhhhhcCCCcccccccceeecc--chhccCC---CCHHHHhhcccccC
Q 044686           44 CGQVDSFLAPCLAYLTGE---AKPSRACCTGVEYLKDNTPTTADRQAACKCIKD--AATRYRG---IKLDKARQLPKECG  115 (130)
Q Consensus        44 C~~~~~~L~pCl~yl~g~---~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~--~~~~~~~---in~~~a~~LP~~Cg  115 (130)
                      |..+...+.+|.+|++++   ..|+..||++++.+.         ...|+|...  ....+..   ++..++..||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            556666778999999973   478899999999984         247999533  2222211   58999999999999


Q ss_pred             CCCCC
Q 044686          116 VDIGV  120 (130)
Q Consensus       116 v~~p~  120 (130)
                      +.+++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99876

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.83  E-value=5.4e-11  Score=79.54  Aligned_cols=65  Identities=35%  Similarity=0.794  Sum_probs=50.8

Q ss_pred             cCcccchhhhcC-CCCCccccccchhhhhhcCCCccccccccee--eccchhcc----------CCCCHHHHhhcccccC
Q 044686           49 SFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRY----------RGIKLDKARQLPKECG  115 (130)
Q Consensus        49 ~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~----------~~in~~~a~~LP~~Cg  115 (130)
                      ..+.+|.+|+++ ...|+..||++|+.+.          ..|+|  ++......          .+++..+|..||+.||
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~----------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD----------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHHh----------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence            458999999998 4578999999999993          35666  55544431          2588999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 044686          116 VDIGVPITPDIDC  128 (130)
Q Consensus       116 v~~p~~is~~~dC  128 (130)
                      +++++     +||
T Consensus        83 v~~~~-----~~C   90 (90)
T PF00234_consen   83 VSPPY-----TDC   90 (90)
T ss_dssp             SSSSS-----S-G
T ss_pred             CCCCC-----CCC
Confidence            99998     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=93.28  E-value=0.032  Score=37.56  Aligned_cols=73  Identities=23%  Similarity=0.443  Sum_probs=45.2

Q ss_pred             ccccccCcccchhhhc--C---CCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHH-HHhhcccccC
Q 044686           44 CGQVDSFLAPCLAYLT--G---EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLD-KARQLPKECG  115 (130)
Q Consensus        44 C~~~~~~L~pCl~yl~--g---~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~-~a~~LP~~Cg  115 (130)
                      |.....+|.-|.+.+.  +   +.++..+||.-++.+.+.      --+.|+|  +|...-++.++|.+ ....|-..||
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG   75 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG   75 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence            5444457788998881  1   245678999999998642      1357999  44322221133333 3455778899


Q ss_pred             CCCCCCC
Q 044686          116 VDIGVPI  122 (130)
Q Consensus       116 v~~p~~i  122 (130)
                      ...|..+
T Consensus        76 k~~p~gf   82 (85)
T PF14547_consen   76 KTVPSGF   82 (85)
T ss_pred             CcCcCCC
Confidence            8876443

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=91.11  E-value=0.13  Score=34.74  Aligned_cols=72  Identities=26%  Similarity=0.420  Sum_probs=44.6

Q ss_pred             CccccccCcccchhhhcC-----CCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHH-Hhhccccc
Q 044686           43 TCGQVDSFLAPCLAYLTG-----EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDK-ARQLPKEC  114 (130)
Q Consensus        43 ~C~~~~~~L~pCl~yl~g-----~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~-a~~LP~~C  114 (130)
                      .|.....+|.-|..-+..     +.+|..+||.-++.+.+.     | -+.|+|  +|...-++ .+|.+- ..-|-..|
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi-~~~~pv~l~llln~C   75 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGI-SINIPVALSLLLNSC   75 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCc-ccccChhHHHHHHHH
Confidence            455555567788887743     246678999999998653     1 358999  44322222 233333 44466679


Q ss_pred             CCCCCCC
Q 044686          115 GVDIGVP  121 (130)
Q Consensus       115 gv~~p~~  121 (130)
                      |...|..
T Consensus        76 Gk~~P~g   82 (85)
T cd01958          76 GRNVPPG   82 (85)
T ss_pred             cCcCCCC
Confidence            9987753

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		3e-20
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		2e-19
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		2e-18
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		2e-17
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		2e-17
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		4e-17
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		1e-16
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		5e-16
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		6e-15
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		1e-14

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           ITCGQV+S + PCL Y  G A PS ACC+GV  LK    TTADR+ AC C+K+AA   +G
Sbjct: 1   ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +    A  +P +CGV +   I+  IDCS+
Sbjct: 61  LNAGNAASIPSKCGVSVPYTISASIDCSR 89

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 41  AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           AITCGQV S LAPCLAYL       R CC GV+ L ++  TT DRQ AC C+K AA    
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           GI L KA  LP  CGV+I   I+P  DCSK
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 41  AITCGQVDSFLAPCLAYLTGEAK-PSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
           AI+CGQV S +APC++Y  G+   PS  CC+GV  L +   TTADR+AAC C+K+AA   
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            G+    A  +P +CGV I   I+   DCS+
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           + CGQVDS + PCL Y+ G   PS  CC GV  L +   ++ DRQ  C C+K  A     
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           + L+ A  +P +C V++   I+PDIDCS+
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           + CGQVDS + PCL Y+ G   PS  CC GV  L +   ++ DRQ  C C+K  A     
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           + L+ A  +P +C V++   I+PDIDCS+
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           I CG VDS + PCL+Y+ G   PS  CC GV+ L +   + +DRQ+AC C+K  A     
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +  D AR +P +CGV++   I+ +IDCS+
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 44  CGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIK 103
           CG VDS + PCL+Y+ G   PS  CC GV+ L +   + +DRQ+AC C+K  A     + 
Sbjct: 3   CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 104 LDKARQLPKECGVDIGVPITPDIDCSK 130
            D AR +P +CGV++   I+ +IDCS+
Sbjct: 63  EDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 53/89 (59%)
Query: 41  AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           AI+CG V S L+PCL YLTG   PS  CC GV+ L     TT DRQAAC C+K AA    
Sbjct: 1   AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCS 129
            +  + A  LP +CGV+I   I+   +C+
Sbjct: 61  KLNTNNAAALPGKCGVNIPYKISTTTNCN 89

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           ITCGQV S LAPC+ Y+ G      ACC G+  + +   TT DRQAAC C+K  +    G
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCS 129
           +  + A  LP +CGV I   I+   +C+
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCA 89

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           +TCGQV   LA C+ +L        +CCTGV+ + +++ TTADR+A C C+K AA   RG
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           I  + A  LP +CGV+I   I+   +C+ 
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNCNS 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	1e-35
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	1e-34
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-34
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	4e-34
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	7e-34
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	4e-05

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  116 bits (293), Expect = 1e-35
 Identities = 38/89 (42%), Positives = 55/89 (61%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           I CG VDS + PCL+Y+ G   PS  CC GV+ L +   + +DRQ+AC C+K  A     
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60

Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +  D AR +P +CGV++   I+ +IDCS+
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  114 bits (287), Expect = 1e-34
 Identities = 37/89 (41%), Positives = 50/89 (56%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           ITCGQV S LAPC+ Y+ G      ACC G+  + +   TT DRQAAC C+K  +    G
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61

Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           +  + A  LP +CGV I   I+   +C+ 
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCAT 90

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score =  113 bits (284), Expect = 3e-34
 Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 41  AITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
           AI+CGQV S +APC++Y  G  + PS  CC+GV  L +   TTADR+AAC C+K+AA   
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            G+    A  +P +CGV I   I+   DCS+
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score =  113 bits (283), Expect = 4e-34
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           +TCGQV   LA C+ +L        +CCTGV+ + +++ TTADR+A C C+K AA   RG
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           I  + A  LP +CGV+I   I+   +C+ 
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNCNS 89

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score =  112 bits (282), Expect = 7e-34
 Identities = 50/90 (55%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 41  AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
           AITCGQV S LAPCLAYL     P   CC GV+ L ++  TT DRQ AC C+K AA    
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59

Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCSK 130
           GI L KA  LP  CGV+I   I+P  DCSK
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 38.5 bits (89), Expect = 4e-05
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 40  AAITCGQVDSFLAPCLAYLTG--EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAAT 97
           A   CG     L  C   ++      PS+ CCT ++         AD    C        
Sbjct: 1   AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQ--------HADFACLCGYKNSPWL 52

Query: 98  RYRGIKLDKARQLPKECGV 116
              G+  + A  LPK+CG+
Sbjct: 53  GSFGVDPELASALPKQCGL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.95
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.94
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.94
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.94
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.94
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.94
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.58
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.44
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.42
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	89.08
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	82.15

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.95  E-value=2.9e-30  Score=175.68  Aligned_cols=90  Identities=47%  Similarity=0.860  Sum_probs=85.0

Q ss_pred             ccCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686           41 AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV  120 (130)
Q Consensus        41 ~~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~  120 (130)
                      +++|+++...|.||++||+|++.|++.||+|+++|++.++|+.|||..|.|+++....+++||.++|.+||++||+++||
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~   80 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY   80 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCC
Confidence            46899999999999999999778999999999999999999999999999999877777789999999999999999999


Q ss_pred             CCCCCCCCCC
Q 044686          121 PITPDIDCSK  130 (130)
Q Consensus       121 ~is~~~dC~~  130 (130)
                      +||+++||++
T Consensus        81 ~Is~~~dC~~   90 (93)
T 2ljo_A           81 KISTTTNCNT   90 (93)
T ss_dssp             CCSTTCCGGG
T ss_pred             CCCCCCCCCC
Confidence            9999999985

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.94  E-value=1.6e-29  Score=170.95  Aligned_cols=89  Identities=43%  Similarity=0.943  Sum_probs=82.7

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP  121 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~  121 (130)
                      ++|+++...|.||++|++|++.|+++||++|+++++.|+|+.|||..|+|+++....+++||+++|++||++||+++||+
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~   80 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT   80 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSSC
T ss_pred             CCHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCCC
Confidence            46999999999999999985459999999999999999999999999999988777777899999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          122 ITPDIDCSK  130 (130)
Q Consensus       122 is~~~dC~~  130 (130)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (90)
T 1bwo_A           81 ISLNIDCSR   89 (90)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999985

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.94  E-value=3.6e-29  Score=170.04  Aligned_cols=90  Identities=47%  Similarity=0.936  Sum_probs=83.6

Q ss_pred             ccCccccccCcccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCC
Q 044686           41 AITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        41 ~~~C~~~~~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      +++|+++...|.||++|++| +..|+++||+||+++++.|+|+.|||..|+|++.....+++||+++|++||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            36899999999999999998 55788899999999999999999999999999877777778999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 044686          120 VPITPDIDCSK  130 (130)
Q Consensus       120 ~~is~~~dC~~  130 (130)
                      |+||++|||++
T Consensus        81 ~~is~~~dC~~   91 (93)
T 1afh_A           81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCSSS
T ss_pred             CCCCCCCCCcc
Confidence            99999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.94  E-value=5.5e-29  Score=168.50  Aligned_cols=89  Identities=42%  Similarity=0.824  Sum_probs=82.8

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP  121 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~  121 (130)
                      ++|+++...|.||++|++|++.|+++||++|+++++.|+|+.|||..|+|+++.+..+++||+++|++||++||+++||+
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~~   80 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYK   80 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSSC
T ss_pred             CCHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCCC
Confidence            47999999999999999985459999999999999999999999999999988777777899999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          122 ITPDIDCSK  130 (130)
Q Consensus       122 is~~~dC~~  130 (130)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T 1siy_A           81 ISTSTNCNS   89 (91)
T ss_dssp             SCTTSCSST
T ss_pred             CCCCCCCcc
Confidence            999999986

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.94  E-value=7e-29  Score=168.10  Aligned_cols=88  Identities=55%  Similarity=0.937  Sum_probs=81.7

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP  121 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~  121 (130)
                      ++|+++...|.||++|++|+..|+ +||+||+++++.|+|+.|||..|+|+++.+..+++||+++|++||++||+++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~   80 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYK   80 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCSSC
T ss_pred             CChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCCCC
Confidence            689999999999999999843388 9999999999999999999999999988777787899999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          122 ITPDIDCSK  130 (130)
Q Consensus       122 is~~~dC~~  130 (130)
                      ||++|||++
T Consensus        81 is~~~dC~~   89 (91)
T 1t12_A           81 ISPSTDCSK   89 (91)
T ss_dssp             SSSSSCCTT
T ss_pred             CCCCCCCcc
Confidence            999999986

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.94  E-value=5.3e-29  Score=168.88  Aligned_cols=89  Identities=42%  Similarity=0.851  Sum_probs=83.1

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP  121 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~  121 (130)
                      ++|+++...|.||++|++|++.|+++||++|++|++.|+|+.|||..|+|++.....+++||+++|++||++||+++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~~   81 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPYK   81 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSSC
T ss_pred             CChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCCC
Confidence            67999999999999999986678899999999999999999999999999987777777899999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          122 ITPDIDCSK  130 (130)
Q Consensus       122 is~~~dC~~  130 (130)
                      ||++|||++
T Consensus        82 is~~~dC~~   90 (92)
T 2alg_A           82 ISASTNCAT   90 (92)
T ss_dssp             SSTTSCGGG
T ss_pred             CCCCCCCcc
Confidence            999999985

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.58  E-value=1.1e-16  Score=104.62  Aligned_cols=70  Identities=30%  Similarity=0.606  Sum_probs=59.4

Q ss_pred             ccCccccccCcccchhhhcCC--CCCccccccchhhhhhcCCCcccccccceeeccc---hhccCCCCHHHHhhcccccC
Q 044686           41 AITCGQVDSFLAPCLAYLTGE--AKPSRACCTGVEYLKDNTPTTADRQAACKCIKDA---ATRYRGIKLDKARQLPKECG  115 (130)
Q Consensus        41 ~~~C~~~~~~L~pCl~yl~g~--~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg  115 (130)
                      ..+|+++...|.||++|++++  ..|+++||++||+.        |  ..|+|.+..   +..+ +||+++|++||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~--~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------D--FACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------C--HHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------C--cCCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            468999999999999999973  68999999999982        3  389996543   5667 799999999999999


Q ss_pred             CCCCCC
Q 044686          116 VDIGVP  121 (130)
Q Consensus       116 v~~p~~  121 (130)
                      +++||.
T Consensus        71 v~~p~~   76 (77)
T 2rkn_A           71 LANAPT   76 (77)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            999874

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.44  E-value=4.8e-15  Score=94.70  Aligned_cols=59  Identities=34%  Similarity=0.586  Sum_probs=48.9

Q ss_pred             cCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhhcccccCCCCC
Q 044686           49 SFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        49 ~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      +.|.||++|+++++.||++||++||+           +..|+|  +++..... +||.++|++||++||+++|
T Consensus         5 ~~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTCCCCCHHHHHHHHH-----------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            37999999999877899999999997           358999  55522221 5999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.42  E-value=7.6e-15  Score=94.28  Aligned_cols=63  Identities=29%  Similarity=0.618  Sum_probs=50.7

Q ss_pred             CccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhhcccccCCCCC
Q 044686           43 TCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        43 ~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      +|...  .|.||++|++++.+||++||++||+           +..|+|  +++..... +||.++|.+||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            35543  8999999999877899999999997           358999  55522222 5999999999999999876

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=89.08  E-value=0.037  Score=45.55  Aligned_cols=50  Identities=18%  Similarity=0.583  Sum_probs=32.0

Q ss_pred             cccccchhhhhhcCCCccccccccee--eccchhc----------cCCCCHHHHhhcccccCCCCC--CCCCC
Q 044686           66 RACCTGVEYLKDNTPTTADRQAACKC--IKDAATR----------YRGIKLDKARQLPKECGVDIG--VPITP  124 (130)
Q Consensus        66 ~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~----------~~~in~~~a~~LP~~Cgv~~p--~~is~  124 (130)
                      .+||+.|+.+.+        ..-|+|  ++..+..          ...+ ..+|..||..||+..|  .+|+.
T Consensus       429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCCCccCCccC
Confidence            579999998731        256888  5443321          0012 3459999999999866  45554

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=82.15  E-value=0.4  Score=31.01  Aligned_cols=67  Identities=25%  Similarity=0.513  Sum_probs=45.2

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhh-cccccCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQ-LPKECGVDI  118 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~-LP~~Cgv~~  118 (130)
                      +.|.    +|.-|.+-+.|...|..+||.-++.+.+.     | -+.|+|  +|  +-++  +|.+...+ |-..||..+
T Consensus         6 ~~CP----kLgvCanvL~g~~~~~~~CC~Ll~GL~dl-----e-AAvCLCtaik--~Lgi--lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGSLGTVDDCCALIGGLGDI-----E-AIVCLCIQLR--ALGI--LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             CCSC----CCGGGGGGGGTCCTTHHHHHHHHHTSCHH-----H-HHHHHHHHHH--HHTC--SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhHHHHHhCcCCCCCCccchhhhCcchh-----h-hhhhhhhhcc--ccce--eecChhHHHHHHHhCCcC
Confidence            4577    68889998865333678999999998643     1 358999  44  2122  46665555 667899987


Q ss_pred             CCCC
Q 044686          119 GVPI  122 (130)
Q Consensus       119 p~~i  122 (130)
                      |..|
T Consensus        72 P~gF   75 (80)
T 1hyp_A           72 PSNA   75 (80)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            7543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-31
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-30

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  105 bits (263), Expect = 2e-31
 Identities = 37/89 (41%), Positives = 52/89 (58%)

Query: 42  ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
           + CGQVDS + PCL Y+ G   PS  CC GV  L +   ++ DRQ  C C+K  A     
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60

Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
           + L+ A  +P +C V++   I+PDIDCS+
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score =  103 bits (257), Expect = 2e-30
 Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 41  AITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
           AI+CGQV S +APC++Y  G  + PS  CC+GV  L +   TTADR+AAC C+K+AA   
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
            G+    A  +P +CGV I   I+   DCS+
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.94
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.94
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.06
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.05
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	88.03
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	85.24
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	80.44
d1hssa_	120	0.19 alpha-amylase inhibitor {Wheat (Triticum aest	80.28

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.94  E-value=1.8e-29  Score=170.00  Aligned_cols=90  Identities=47%  Similarity=0.936  Sum_probs=83.9

Q ss_pred             ccCccccccCcccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCC
Q 044686           41 AITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        41 ~~~C~~~~~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      +++|+++...|.||++||+| +..|++.||+|+++|++.++|+.|||..|.|+++....+++||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            46899999999999999998 56899999999999999999999999999999987766658999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 044686          120 VPITPDIDCSK  130 (130)
Q Consensus       120 ~~is~~~dC~~  130 (130)
                      |||+++|||++
T Consensus        81 ~pis~~~dCs~   91 (93)
T d1fk5a_          81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCGGG
T ss_pred             CCCCCCCCCCc
Confidence            99999999985

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.94  E-value=2.1e-29  Score=169.16  Aligned_cols=89  Identities=42%  Similarity=0.942  Sum_probs=83.5

Q ss_pred             cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686           42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP  121 (130)
Q Consensus        42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~  121 (130)
                      ++|+++...|.||++|++|+++|++.||+|+++|++.++|+.||+..|+|+++....+++||.+|+.+||++||+++|||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~p   80 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYT   80 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCSC
T ss_pred             CCHHHHHHHHHhhHHHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCCC
Confidence            47999999999999999997789999999999999999999999999999998776666899999999999999999999


Q ss_pred             CCCCCCCCC
Q 044686          122 ITPDIDCSK  130 (130)
Q Consensus       122 is~~~dC~~  130 (130)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T d1mida_          81 ISPDIDCSR   89 (91)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999985

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.06  E-value=7.6e-12  Score=78.17  Aligned_cols=61  Identities=34%  Similarity=0.683  Sum_probs=52.7

Q ss_pred             ccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--ecc-chhccCCCCHHHHhhcccccCCCCC
Q 044686           44 CGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKD-AATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        44 C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~-~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      |+..  .|+||++.+++|.+||.+||+-+|+           |..|+|  +++ ....|  ||..++..+-..||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~y--v~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQY--IRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCCCCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHH--HTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCCCCcHHHHHHHHh-----------cCCccceecCCccHHHH--cCCHHHHHHHHhcCCCCC
Confidence            5544  7999999999988999999999998           789999  455 55566  899999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.05  E-value=6.7e-12  Score=78.85  Aligned_cols=62  Identities=32%  Similarity=0.723  Sum_probs=53.5

Q ss_pred             CccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--ecc-chhccCCCCHHHHhhcccccCCCCC
Q 044686           43 TCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKD-AATRYRGIKLDKARQLPKECGVDIG  119 (130)
Q Consensus        43 ~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~-~~~~~~~in~~~a~~LP~~Cgv~~p  119 (130)
                      .|+..  .|+||++.+++|.+||.+||+-+|+           |..|+|  +++ ....|  |+..++..+-..||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~y--v~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGRY--VNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHHH--TTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCCCCCcHHHHHHHHh-----------cCCccceeccCccHHHH--cCCHHHHHHHHhcCCCCC
Confidence            46655  7999999999988999999999998           778999  455 55566  899999999999999987

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=85.24  E-value=0.12  Score=34.43  Aligned_cols=72  Identities=26%  Similarity=0.547  Sum_probs=45.2

Q ss_pred             ccCcccc--ccCcccchhhhcC--C-C---CC-----c-----------cccccchhhhhhcCCCccccccccee--ecc
Q 044686           41 AITCGQV--DSFLAPCLAYLTG--E-A---KP-----S-----------RACCTGVEYLKDNTPTTADRQAACKC--IKD   94 (130)
Q Consensus        41 ~~~C~~~--~~~L~pCl~yl~g--~-~---~P-----s-----------~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~   94 (130)
                      ...|...  -..|..|..||.-  . .   .+     .           ..||+.|+.+.          ..|.|  |+.
T Consensus        15 ~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~~----------~~CrC~~l~~   84 (125)
T d1psya_          15 SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVR----------DECQCEAIKY   84 (125)
T ss_dssp             SSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTCC----------SSHHHHHHHH
T ss_pred             cccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhCC----------cCCcCHHHHH
Confidence            3456553  2479999999973  1 1   11     0           25999999983          46888  554


Q ss_pred             chhc------cCCCC----HHHHhhcccccCCCCCCCC
Q 044686           95 AATR------YRGIK----LDKARQLPKECGVDIGVPI  122 (130)
Q Consensus        95 ~~~~------~~~in----~~~a~~LP~~Cgv~~p~~i  122 (130)
                      .+..      +-+-.    +.+|..||..||+...=.+
T Consensus        85 ~v~~~~qq~~~~~~~~~~~~q~Ak~LPs~C~i~~~~~~  122 (125)
T d1psya_          85 IAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQT  122 (125)
T ss_dssp             HHHHHHHHTTCCTTCSHHHHHHHHHHHHHHTCSTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhcCCcchhhh
Confidence            3321      11111    5688999999999755443

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=80.44  E-value=0.25  Score=30.10  Aligned_cols=63  Identities=24%  Similarity=0.484  Sum_probs=41.7

Q ss_pred             CcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhh-cccccCCCCCCCC
Q 044686           50 FLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQ-LPKECGVDIGVPI  122 (130)
Q Consensus        50 ~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~-LP~~Cgv~~p~~i  122 (130)
                      +|.-|.+-+.+...+..+||.-++.+.+.     | -+.|+|  +|.  ..+  +|...... |-..||...|..|
T Consensus         5 Klg~C~nvLg~~~~~~~~CC~Ll~GL~dl-----e-AAvCLCtaika--~~l--lnvpv~l~llln~Cgk~~P~gF   70 (75)
T d1hypa_           5 DLSICLNILGGSLGTVDDCCALIGGLGDI-----E-AIVCLCIQLRA--LGI--LNLNRNLQLILNSCGRSYPSNA   70 (75)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHH-----H-HHHHHHHHHHH--HTC--SCHHHHHHHHHHHTTCSSCCCC
T ss_pred             chhhHHHHhcCccCCCCCcchHHhhHHHH-----H-HHHHHHHHHHH--hhh--ccccchHHHHHHHcCCcCcCCC
Confidence            57778887776445678899999888643     1 257999  443  223  55554444 5668999877544

>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Proteinase/alpha-amylase inhibitors
domain: 0.19 alpha-amylase inhibitor
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=80.28  E-value=0.086  Score=35.01  Aligned_cols=65  Identities=18%  Similarity=0.399  Sum_probs=41.7

Q ss_pred             cCcccchhhhcC---CCCCc----cccccchhhhhhcCCCccccccccee--eccch----------------hccCC--
Q 044686           49 SFLAPCLAYLTG---EAKPS----RACCTGVEYLKDNTPTTADRQAACKC--IKDAA----------------TRYRG--  101 (130)
Q Consensus        49 ~~L~pCl~yl~g---~~~Ps----~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~----------------~~~~~--  101 (130)
                      .-|..|..|+..   |..++    ..||..+..+.          .-|.|  +...+                ..||+  
T Consensus        11 ~pL~~CR~yv~~q~~G~~~~~~~k~~CC~eLa~i~----------~~CRCeALr~~~~~~~~e~G~~~g~~~~e~~PgC~   80 (120)
T d1hssa_          11 PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHIS----------EWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCR   80 (120)
T ss_dssp             SCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTSC----------TTTHHHHHHHHHHHHHHHCCC---------STTCC
T ss_pred             CccHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC----------cccchHHHHHHHhhhccccCCCCCccccccCCCCC
Confidence            357789999974   33333    67999999873          36888  32211                12332  


Q ss_pred             --CCHHHHhhcccccCCCCCCCCC
Q 044686          102 --IKLDKARQLPKECGVDIGVPIT  123 (130)
Q Consensus       102 --in~~~a~~LP~~Cgv~~p~~is  123 (130)
                        .-...|..||..||++++-..+
T Consensus        81 re~~~~~aa~Lpa~CNl~tv~~~~  104 (120)
T d1hssa_          81 REVVKLTAASITAVCRLPIVVDAS  104 (120)
T ss_dssp             HHHHHHHHTTHHHHTTCCEECSTT
T ss_pred             hHHHHHHHhhcccccCCCccCCCC
Confidence              2235678899999999875443