Citrus Sinensis ID: 044718

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MASAYNDHENGIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccccccccccccccccccEEEEcccccEEEEEcccccEEEEEHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccHccccccccccccHHHHcccccccccccccccccccccHHHHccccEEcccccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
masayndhengihienhsgsgrsgdfmdvdlleeepcikcnrrdenllvcsqsgclisvhenclscgvefddvgnfyrpycwykcELMRTKELRKKAMETKKKLACfidsksfsgdkkkencrtdkanELSISSlheernygyggcedrmddvQVEDLIVEVEFElendgdnaktadsCDRFKRAlesqsdplavhshpgdkinnsrdktpgigslvnytskerpseenvcetyel
Flexible Loop (DISEMBL)
masayndhengihienhsgsgrsGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLacfidsksfsgdkkkencrtdkanelsisslheernygyggcEDRMDDVQVEDLIVEVEfelendgdnaktADSCDRFKRALEsqsdplavhshpgdkinnsrdktpgigslvnytskerpseenvcetyel
Low Complexity Region (SEG)
MASAYNDHENGIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL
Disordered region (IsUnstruct)
*************************FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRK*****KKKLACFI*******************************NYGYGGCEDRMDDVQVEDLIVEVEFEL**********************************************************************
Disordered Region (DISOPRED)
******************************LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTK********TKKKLAC**********************************************************************************************************************************
Disordered Region (DISEMBL)
********ENGIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYT****************
Disordered Region (DISPRO)
*****NDHENGIHIENH**********DVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSF***************************YGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQ***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASAYNDHENGIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
296085075	566	unnamed protein product [Vitis vinifera]	0.453	0.189	0.407	8e-21
224065645	472	predicted protein [Populus trichocarpa]	0.745	0.372	0.348	3e-16
449453762	510	PREDICTED: uncharacterized protein LOC10	0.487	0.225	0.388	3e-15
357462399	351	hypothetical protein MTR_3g082160 [Medic	0.449	0.301	0.419	5e-15
297739691	774	unnamed protein product [Vitis vinifera]	0.457	0.139	0.403	4e-13
147846688	774	hypothetical protein VITISV_016915 [Viti	0.457	0.139	0.403	4e-13
255539006	422	hypothetical protein RCOM_1598630 [Ricin	0.567	0.317	0.346	4e-12
356546362	466	PREDICTED: uncharacterized protein LOC10	0.309	0.156	0.461	1e-11
255571552	814	conserved hypothetical protein [Ricinus	0.5	0.144	0.336	3e-11
356555030	580	PREDICTED: uncharacterized protein LOC10	0.338	0.137	0.421	4e-11

>gi|296085075|emb|CBI28490.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 75/113 (66%), Gaps = 6/113 (5%)

Query: 17  HSGSGRSGD-----FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFD 71
            SG+  S D     +M+++  ++  CIKC    E +LVCS   C ++VHE C++C   FD
Sbjct: 107 QSGASGSWDMSTQAWMEIEWTQQSKCIKCGEGGE-VLVCSDRVCRLAVHEKCMNCSAAFD 165

Query: 72  DVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRT 124
           D+G+FY PYCWY+C + ++ E RK+AM +KK L+ F+D+K+  G+++KE  ++
Sbjct: 166 DMGDFYCPYCWYRCAIAKSNEARKRAMSSKKALSTFLDTKALCGNQQKEKTKS 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065645|ref|XP_002301900.1| predicted protein [Populus trichocarpa] gi|222843626|gb|EEE81173.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 104/221 (47%), Gaps = 45/221 (20%)

Query: 21  GRSGDFMDVDLLEEEPCIKCNRRDEN-LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRP 79
           G  GD+M+VD      C+ CN+R ++ LLVC   GC +S+HE C +  + FDD G F  P
Sbjct: 57  GNGGDWMEVDA-----CLSCNKRGKSKLLVCCVIGCPVSIHEKCANFKLAFDDSGRFCCP 111

Query: 80  YCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEER 139
           YC YK E+ R KEL +KAM  KK L  FID +   G+ K+                    
Sbjct: 112 YCSYKREVGRAKELFRKAMLAKKALLGFIDPEMVGGEAKRN------------------- 152

Query: 140 NYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSD---PLAVH 196
               GG     D  +  D +VE         D  K +D CDR +  ++ + D   P AV 
Sbjct: 153 ----GGERAEFDGAENRDALVE---------DGLKVSD-CDRCEVMVDDEMDGALPGAVD 198

Query: 197 -SHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYEL 236
            S  G K  +  +K  GI SL +  S E   E N+ ET+E 
Sbjct: 199 GSDNGHK--SQEEKIQGIESLEDSISNEIRDERNISETHEF 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453762|ref|XP_004144625.1| PREDICTED: uncharacterized protein LOC101213119 [Cucumis sativus] gi|449520068|ref|XP_004167056.1| PREDICTED: uncharacterized LOC101213119 [Cucumis sativus]

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 6/121 (4%)

Query: 1   MASAYNDHENGIHIEN---HSGSGR-SGDFMD-VDLLEEEPCIKCNRRDENLLVCSQSGC 55
           MAS+    ++  ++E+   H  S + + D +D +D  +++ C +C+    +LLVC++ GC
Sbjct: 25  MASSPLPDQDVPNVEDNTLHDASNKETDDVLDKIDCFQKDTCTRCDESG-DLLVCTEPGC 83

Query: 56  LISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSG 115
            I++HE C+SC   FD+ G FY PYC YK  L+R  ELR+K M  K+ L+ FID++   G
Sbjct: 84  PIALHELCMSCEPSFDEDGRFYCPYCSYKRALIRVNELRRKTMVAKRALSDFIDTRMVGG 143

Query: 116 D 116
           D
Sbjct: 144 D 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462399|ref|XP_003601481.1| hypothetical protein MTR_3g082160 [Medicago truncatula] gi|355490529|gb|AES71732.1| hypothetical protein MTR_3g082160 [Medicago truncatula]

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)

Query: 2   ASAYNDHENGIHIENHSGSGRSGD----FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLI 57
           A+ YN + +G   +NH       D     + VD L++  CI CN+    LLVCSQ+ C +
Sbjct: 36  ATVYNSNSDGD--DNHHTHTPFPDSVPETVPVDSLDDNICITCNKLGGELLVCSQTDCPV 93

Query: 58  SVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFID 109
           SVH  C+    +FDD GNF+ PYC YK  L +T+ELR+KA+  KK L+ F++
Sbjct: 94  SVHVTCIGSEPKFDDSGNFFCPYCAYKRALKKTRELREKAVLAKKALSSFLE 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739691|emb|CBI29873.3| unnamed protein product [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 2   ASAYNDHENGIHIENHSGSGRSGDFMDVDL-----LEEEPCIKCNRRDENLLVCSQSGCL 56
           ++ Y+D E+GI +E  +       F    L      E+  C+KC + D  LLVCS SGC 
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTK-DGQLLVCSSSGCP 526

Query: 57  ISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDS 110
           + VHENCL C   FD++GNFY P+C Y   +    E +KK    KK+LA FI++
Sbjct: 527 LVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINA 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846688|emb|CAN80644.1| hypothetical protein VITISV_016915 [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 2   ASAYNDHENGIHIENHSGSGRSGDFMDVDL-----LEEEPCIKCNRRDENLLVCSQSGCL 56
           ++ Y+D E+GI +E  +       F    L      E+  C+KC + D  LLVCS SGC 
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTK-DGQLLVCSSSGCP 526

Query: 57  ISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDS 110
           + VHENCL C   FD++GNFY P+C Y   +    E +KK    KK+LA FI++
Sbjct: 527 LVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFINA 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539006|ref|XP_002510568.1| hypothetical protein RCOM_1598630 [Ricinus communis] gi|223551269|gb|EEF52755.1| hypothetical protein RCOM_1598630 [Ricinus communis]

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 13/147 (8%)

Query: 37  CIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKK 96
           C+KCN+  + LL+C  +GC I +H  C+    ++D+ GNF+ PYCWYK +  R +E +K 
Sbjct: 24  CLKCNKGGK-LLICCGAGCAICLHVECIPRKPKYDEEGNFHCPYCWYKLQQARAQEWKKM 82

Query: 97  AMETKKKLACFIDSKS--FSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQ 154
           A+  KK L+ F+DS+      DK K N R     + S+     ERN     C +    + 
Sbjct: 83  ALLAKKALSDFMDSRQVEVGNDKAKLNDRRINGADTSVGP---ERN-----CCEHFTKMD 134

Query: 155 VEDLIVEVEFELENDGD--NAKTADSC 179
           V+D +     E+E D +  N K +D C
Sbjct: 135 VDDEVRNETGEVEEDQNEKNVKISDGC 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546362|ref|XP_003541595.1| PREDICTED: uncharacterized protein LOC100787956 [Glycine max]

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 37  CIKCNRRDE-----NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTK 91
           CI CN + E      LL+CS  GC ++VH  CL+ G +FD  GNF  PYCWYK  +   +
Sbjct: 37  CIHCNNKGEEAKEDGLLICSGRGCPVAVHATCLATGPKFDGSGNFCCPYCWYKRAVDTCR 96

Query: 92  ELRKKAMETKKKLACFID 109
            LR+KA+E K  L+ F+D
Sbjct: 97  RLREKALEAKGDLSRFLD 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571552|ref|XP_002526722.1| conserved hypothetical protein [Ricinus communis] gi|223533911|gb|EEF35636.1| conserved hypothetical protein [Ricinus communis]

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 37  CIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKK 96
           C++C++ D  LLVC+  GC   VHE CL C  +FD+ GNFY P+C Y   + +  E +K 
Sbjct: 469 CVQCSK-DGQLLVCNAVGCPFVVHEKCLGCSPKFDEKGNFYCPFCAYSYAISKYLEAKKT 527

Query: 97  AMETKKKLACFIDSKSFSGDKKKENCRTDKANELSISSLHEERNYGYGGCEDRMDDVQV 155
           A   +K+L+ FI  +      +K +      +E +I  +HE  + G  G + + D V+ 
Sbjct: 528 ATLARKELSAFIHKRPERSHLQKLSNLGHNEDEDNICKIHETADLGERGSDKKNDKVRA 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555030|ref|XP_003545842.1| PREDICTED: uncharacterized protein LOC100806195 [Glycine max]

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 29  VDLLEEEPCIKCNRRDE---NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC 85
           VD+ ++  CI C+ + E    +L+C   GC ++VH  CL    EFDD GNF  PYCWYK 
Sbjct: 68  VDIFDKTICIHCDNKGEEAEGVLICGGRGCPVAVHATCLGFEPEFDDSGNFCCPYCWYKR 127

Query: 86  ELMRTKELRKKAMETKKKLACFI 108
            +   + LR+KAM+ K +L+ F 
Sbjct: 128 AVDTCRRLREKAMKAKGELSRFF 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2035372	345	AT1G01150 [Arabidopsis thalian	0.487	0.333	0.316	2.9e-12
TAIR|locus:2006792	429	AT1G14770 [Arabidopsis thalian	0.309	0.170	0.413	4.5e-09
TAIR|locus:2144568	420	TRFL10 "TRF-like 10" [Arabidop	0.508	0.285	0.300	1.1e-07
TAIR|locus:2200201	314	AT1G68030 [Arabidopsis thalian	0.343	0.257	0.304	1.2e-05

TAIR|locus:2035372 AT1G01150 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 38/120 (31%), Positives = 63/120 (52%)

Query:    21 GRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPY 80
             G S  F   + L E  CI C+  D+ ++ CS + C ++VH  C+   ++ +D   FY PY
Sbjct:    71 GTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVE--LDCEDPATFYCPY 128

Query:    81 CWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGD--KKKENCRTDKANELSIS-SLHE 137
             CW+K +  R+  LR + +   K L  +  S+  SGD    +EN + +  ++ S+   LHE
Sbjct:   129 CWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHE 188

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2006792 AT1G14770 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 31/75 (41%), Positives = 41/75 (54%)

Query:    34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKEL 93
             E  C KC + +  LL+CS+S C   VH+ CL+C V  D+ GNF  P CWY    M   E 
Sbjct:   345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query:    94 RKKAMETKKKLA-CF 107
             +K     K++L  CF
Sbjct:   404 QKLISCAKRRLVKCF 418

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2144568 TRFL10 "TRF-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 40/133 (30%), Positives = 61/133 (45%)

Query:    31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCL---------SCGVEFDDVGNFYRPYC 81
             LL+ + CI C   DE +  C    CL+S H  CL         S     +DV N + PYC
Sbjct:    67 LLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYADLGSTSSSSSSSSEDVSNPFCPYC 126

Query:    82 WYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKENCRTDKANE---LSISSLHEE 138
             W K   +++K LR+K +E +K +  ++D +  S D+       +  N+     I S HE 
Sbjct:   127 WLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDEDITLSGDEIGNQEQSTDIVSDHEL 186

Query:   139 RNYGYGGCEDRMD 151
             +     GC  + D
Sbjct:   187 QGEK-DGCSSKPD 198

GO:0003677 "DNA binding" evidence=IEA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2200201 AT1G68030 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%)

Query:    37 CIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKK 96
             C+ C +    LL CS  GC + VH+ CL     + D G+FY   C   C      + + +
Sbjct:   229 CVNC-KESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDE 287

Query:    97 AMETKKKLACFIDSKSFSGDKK 118
               + K+KL  F+   S    KK
Sbjct:   288 VAKAKRKLVSFLRLMSEVNKKK 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       236   0.00089  113 3  11 23  0.48    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  208 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.72u 0.12s 24.84t   Elapsed:  00:00:01
  Total cpu time:  24.72u 0.12s 24.84t   Elapsed:  00:00:01
  Start:  Fri May 10 07:04:31 2013   End:  Fri May 10 07:04:32 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000043 hypothetical protein (472 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG4299	613	consensus PHD Zn-finger protein [General function	98.45
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.28
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.15
KOG0383	696	consensus Predicted helicase [General function pre	97.68
KOG1973	274	consensus Chromatin remodeling protein, contains P	97.63
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	97.5
COG5141	669	PHD zinc finger-containing protein [General functi	97.24
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	97.13
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.72
KOG1244	336	consensus Predicted transcription factor Requiem/N	96.56
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	96.43
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	96.11
KOG0956	900	consensus PHD finger protein AF10 [General functio	95.13
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	95.01
KOG0957	707	consensus PHD finger protein [General function pre	94.98
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	94.08
KOG1512	381	consensus PHD Zn-finger protein [General function	93.51
KOG0954	893	consensus PHD finger protein [General function pre	93.04
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	92.55
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	91.56
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	91.38
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	90.77
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	87.88
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	84.2
KOG0956	900	consensus PHD finger protein AF10 [General functio	82.81

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.45  E-value=4.8e-08  Score=96.50  Aligned_cols=50  Identities=32%  Similarity=0.633  Sum_probs=44.2

Q ss_pred             CccceecCCCCCeE---EeeCCCCccccccccccCCC--CccCCCCCcccccchhchH
Q 044718           34 EEPCIKCNRRDENL---LVCSQSGCLISVHENCLSCG--VEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        34 qD~CikC~kdGq~L---L~CSg~GCPlsvH~sCLgss--p~fDD~GnFYCPyC~YKka   86 (236)
                      +++|-.|++.|. .   |+|+  +||.+||+.||.+|  +.--|.|.||||.|.++--
T Consensus       253 ~~fCsaCn~~~~-F~~~i~CD--~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~  307 (613)
T KOG4299|consen  253 EDFCSACNGSGL-FNDIICCD--GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV  307 (613)
T ss_pred             HHHHHHhCCccc-cccceeec--CCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence            789999999999 6   9999  89999999999976  3444999999999998843

>smart00249 PHD PHD zinc finger

Probab=98.28  E-value=7e-07  Score=56.12  Aligned_cols=43  Identities=35%  Similarity=0.738  Sum_probs=36.6

Q ss_pred             cceecCC---CCCeEEeeCCCCccccccccccCCCCc-cCCCCCcccccc
Q 044718           36 PCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYC   81 (236)
Q Consensus        36 ~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC   81 (236)
                      .|..|+.   ++. +|.|+  +|+..||..|++.+.. ..+...|+||.|
T Consensus         1 ~C~~C~~~~~~~~-~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGE-LLQCD--GCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCC-EEECC--CCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            4778887   444 99999  9999999999997666 668999999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.15  E-value=8.3e-07  Score=59.28  Aligned_cols=45  Identities=22%  Similarity=0.580  Sum_probs=35.4

Q ss_pred             cceecCC---CCCeEEeeCCCCccccccccccCCCCcc--CCCCCcccccchh
Q 044718           36 PCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEF--DDVGNFYRPYCWY   83 (236)
Q Consensus        36 ~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~f--DD~GnFYCPyC~Y   83 (236)
                      .|.+|+.   +++ +|.|+  +|...||..|++.+...  ...+.|+||.|.-
T Consensus         1 ~C~vC~~~~~~~~-~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGD-MIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSS-EEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCC-eEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            3677777   455 99999  99999999999976542  2456999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=97.68  E-value=1.4e-05  Score=80.24  Aligned_cols=52  Identities=35%  Similarity=0.652  Sum_probs=46.7

Q ss_pred             CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ++-+++.|..|...|. ||+|+  .||.+||.+|++.+..=.+.|+|.||.|...
T Consensus        43 ~~~~~e~c~ic~~~g~-~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p   94 (696)
T KOG0383|consen   43 DDAEQEACRICADGGE-LLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFCP   94 (696)
T ss_pred             chhhhhhhhhhcCCCc-EEEec--cccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence            3568999999999999 99999  9999999999998877778899999999554

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=97.63  E-value=3.7e-05  Score=68.54  Aligned_cols=56  Identities=25%  Similarity=0.434  Sum_probs=43.5

Q ss_pred             CCCCCCCCCcccee-cCCCCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhc
Q 044718           26 FMDVDLLEEEPCIK-CNRRDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        26 ~~~~e~~~qD~Cik-C~kdGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ....+..+...|+= |..-|+ ..-|+..+|| ==||..|+|  +...|.|.||||.|.-.
T Consensus       211 ~~~~d~~e~~yC~Cnqvsyg~-Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~  268 (274)
T KOG1973|consen  211 EEAVDPDEPTYCICNQVSYGK-MIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAE  268 (274)
T ss_pred             ccccCCCCCEEEEeccccccc-ccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhh
Confidence            34444556666664 455566 9999999999 668999999  78899999999999744

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=97.50  E-value=1.7e-05  Score=66.99  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=41.9

Q ss_pred             cccccccCCCCccCCCCCcccccchhchHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhhh
Q 044718           58 SVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFIDSKSFSGDKKKE  120 (236)
Q Consensus        58 svH~sCLgssp~fDD~GnFYCPyC~YKkav~~y~eaKKkA~~AKKeLssFL~s~qv~gd~~k~  120 (236)
                      +||..||.++++-.|+|+|+||.|..++....+......  .+|.+-..||...+.-+.+++-
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~vArIeki   61 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAMPQLPP--TSRSACEKLLSGDLWLARIEKL   61 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcccccCCC--cchhhhhhhccCchHHHHHHHH
Confidence            589999999999899999999999988666555432211  2233445566666655555543

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=97.24  E-value=0.00011  Score=72.80  Aligned_cols=48  Identities=29%  Similarity=0.766  Sum_probs=42.8

Q ss_pred             CCccceecCCCCCe----EEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           33 EEEPCIKCNRRDEN----LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kdGq~----LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      =.++|.+|.....+    +++|+  ||.++||.+|-|  -+|-|+|.|+|-.|-|.
T Consensus       192 ~d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYG--I~f~peG~WlCrkCi~~  243 (669)
T COG5141         192 FDDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYG--IQFLPEGFWLCRKCIYG  243 (669)
T ss_pred             hhhhhHhccccccCCcceEEEec--Ccchhhhhhccc--ceecCcchhhhhhhccc
Confidence            35799999887652    99999  999999999999  78999999999999886

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=97.13  E-value=0.00028  Score=73.95  Aligned_cols=68  Identities=21%  Similarity=0.423  Sum_probs=53.3

Q ss_pred             ccccccccCCCCCCCCCCCCCCCCccceecCCCCC----eEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718           11 GIHIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDE----NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        11 ~~~i~n~s~~g~S~~~~~~e~~~qD~CikC~kdGq----~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka   86 (236)
                      -+.|+|+.-....+    .+......|-.|...--    -+|+|+  +|-++||..|.|  .+|.++|.|+|--|-++.+
T Consensus       200 e~~f~~~e~~~~~~----~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~  271 (1051)
T KOG0955|consen  200 ESYFKNYELGDPKD----ALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ  271 (1051)
T ss_pred             HHHhhhhhccCCCc----cccCCCccceeecccccCCCceEEEcC--CCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence            34556665555554    44557788999986543    299999  999999999999  7899999999999998754

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.72  E-value=0.0019  Score=67.14  Aligned_cols=56  Identities=27%  Similarity=0.458  Sum_probs=46.1

Q ss_pred             CCCCCCCCccceecCCCCCe--EEeeCCCCcccc-ccccccCCCCccCCCCCcccccchhc
Q 044718           27 MDVDLLEEEPCIKCNRRDEN--LLVCSQSGCLIS-VHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        27 ~~~e~~~qD~CikC~kdGq~--LL~CSg~GCPls-vH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ......+..-|..|....-+  ||.|+  +|..+ ||..||...+.--+.+-|||+-|..-
T Consensus       208 ~~~~~~E~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  208 ISGLSQEEVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL  266 (1134)
T ss_pred             ccCcccccccceeeccCChHHhheeec--ccccceeeccccCcccccccccceecCcchhh
Confidence            34445677789999998875  99999  99999 99999996554468999999999854

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=96.56  E-value=0.0012  Score=61.79  Aligned_cols=46  Identities=28%  Similarity=0.511  Sum_probs=38.7

Q ss_pred             CccceecC---CCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           34 EEPCIKCN---RRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        34 qD~CikC~---kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      ...|-.|+   .++| ||+|+  .|-..||..||.+|..--|+|-|-|-.|-
T Consensus       281 ck~csicgtsenddq-llfcd--dcdrgyhmyclsppm~eppegswsc~KOG  329 (336)
T KOG1244|consen  281 CKYCSICGTSENDDQ-LLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCL  329 (336)
T ss_pred             cceeccccCcCCCce-eEeec--ccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence            34455554   4567 99999  99999999999998888899999999995

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=96.43  E-value=0.00092  Score=44.20  Aligned_cols=32  Identities=28%  Similarity=0.699  Sum_probs=17.9

Q ss_pred             EEeeCCCCccccccccccCCCCccCCCCCcccccc
Q 044718           47 LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYC   81 (236)
Q Consensus        47 LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC   81 (236)
                      ||.|+  +|.++||.+|-|.... .+..+|+|-.|
T Consensus         4 ll~C~--~C~v~VH~~CYGv~~~-~~~~~W~C~~C   35 (36)
T PF13831_consen    4 LLFCD--NCNVAVHQSCYGVSEV-PDGDDWLCDRC   35 (36)
T ss_dssp             EEE-S--SS--EEEHHHHT-SS---SS-----HHH
T ss_pred             eEEeC--CCCCcCChhhCCcccC-CCCCcEECCcC
Confidence            99999  9999999999997543 34446999877

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=96.11  E-value=0.003  Score=58.15  Aligned_cols=46  Identities=26%  Similarity=0.672  Sum_probs=37.9

Q ss_pred             CCccceecCC--CCCeEEeeCCCCcccc-ccccccCCCCccCCCCCcccccch
Q 044718           33 EEEPCIKCNR--RDENLLVCSQSGCLIS-VHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        33 ~qD~CikC~k--dGq~LL~CSg~GCPls-vH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      ++-.| .|..  =|| .+-||+..|++- ||..|+|  +.--|.|.||||-|.
T Consensus       220 e~lYC-fCqqvSyGq-MVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk  268 (271)
T COG5034         220 EELYC-FCQQVSYGQ-MVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK  268 (271)
T ss_pred             ceeEE-Eeccccccc-ceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence            44455 4664  377 899999999997 6999999  677799999999996

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=95.13  E-value=0.011  Score=60.92  Aligned_cols=62  Identities=21%  Similarity=0.494  Sum_probs=44.4

Q ss_pred             cceecCCCCC----eEEeeCCCCccccccccccCCCCccCCCCCcccccchhchHHHHHHHHHHHHHHHHHHHHhhhc
Q 044718           36 PCIKCNRRDE----NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCELMRTKELRKKAMETKKKLACFID  109 (236)
Q Consensus        36 ~CikC~kdGq----~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKkav~~y~eaKKkA~~AKKeLssFL~  109 (236)
                      -|.+|.-.--    -|+.|||-.|.++||.-|-+  ----|.|-|||-.|.-          ++.++.-|=+|.=|-|
T Consensus         7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCes----------qeraarvrCeLCP~kd   72 (900)
T KOG0956|consen    7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCES----------QERAARVRCELCPHKD   72 (900)
T ss_pred             ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhh----------hhhhccceeecccCcc
Confidence            5777754322    29999999999999999999  3446899999999963          3444444555554433

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=95.01  E-value=0.0062  Score=65.64  Aligned_cols=57  Identities=23%  Similarity=0.527  Sum_probs=49.4

Q ss_pred             CCCCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718           26 FMDVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        26 ~~~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka   86 (236)
                      |.+..  .+-.|-.|...++  .++.|+  +|.-.+|..|+.+.+...+.|+|+||-|.-.+-
T Consensus      1102 w~~s~--~~~~c~~cr~k~~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1102 WDRSA--VNALCKVCRRKKQDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred             hcccc--chhhhhhhhhcccchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence            65555  7889999998887  489999  999999999999988889999999999985443

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=94.98  E-value=0.015  Score=58.35  Aligned_cols=67  Identities=21%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             ccccccCCCCCCCCCCCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCC----cccccc
Q 044718           13 HIENHSGSGRSGDFMDVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGN----FYRPYC   81 (236)
Q Consensus        13 ~i~n~s~~g~S~~~~~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~Gn----FYCPyC   81 (236)
                      -+.|+..+..|++-.+...-....|..|.+.-+  -|+.|+  .|-+.||--||.+|++--|.-+    |-|..|
T Consensus       523 ~~~~rk~g~~st~~~s~~~a~~ysCgiCkks~dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  523 DFNNRKSGSRSTPAISAPKAMNYSCGICKKSTDQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             ccccccccccCCcccccccccceeeeeeccchhhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence            466777777777777777778899999999876  388999  9999999999998887777766    999999

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=94.08  E-value=0.026  Score=57.43  Aligned_cols=50  Identities=20%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             CCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718           32 LEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        32 ~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      .....|..|+..|+  ++|+|+  +|-++||-.|+-++..--+.|-|+||.|.-
T Consensus        66 ~~crvCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~  117 (694)
T KOG4443|consen   66 PSCRVCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCTR  117 (694)
T ss_pred             CCceeeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHHh
Confidence            34567777776666  599999  999999999999887778999999999974

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=93.51  E-value=0.037  Score=52.53  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             CCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccc-cch
Q 044718           32 LEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRP-YCW   82 (236)
Q Consensus        32 ~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCP-yC~   82 (236)
                      .+..+|+.|+++-.  +.|+|+  -|-.++|.-|+|  +.-.|.|.|.|- ||.
T Consensus       312 ~~C~lC~IC~~P~~E~E~~FCD--~CDRG~HT~CVG--L~~lP~G~WICD~~C~  361 (381)
T KOG1512|consen  312 SSCELCRICLGPVIESEHLFCD--VCDRGPHTLCVG--LQDLPRGEWICDMRCR  361 (381)
T ss_pred             cccHhhhccCCcccchheeccc--cccCCCCccccc--cccccCccchhhhHHH
Confidence            35678999998876  499999  999999999999  777899999997 665

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=93.04  E-value=0.051  Score=56.37  Aligned_cols=48  Identities=23%  Similarity=0.507  Sum_probs=41.4

Q ss_pred             CCccceecCCC----CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           33 EEEPCIKCNRR----DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kd----Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      +.-+|-+|-.+    +.++++|+  -|.+.||..|-|  ..-+|+|-|.|--|+.-
T Consensus       270 edviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg  321 (893)
T KOG0954|consen  270 EDVICDVCRSPDSEEANEMVFCD--KCNICVHQACYG--ILEVPEGPWLCRTCALG  321 (893)
T ss_pred             ccceeceecCCCccccceeEEec--cchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence            67788888887    55699999  999999999999  56678999999988753

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=92.55  E-value=0.058  Score=39.38  Aligned_cols=48  Identities=29%  Similarity=0.636  Sum_probs=36.7

Q ss_pred             CccceecCCC-CCeEEeeCCCCccccccccccCCCC---ccCCCCCcccccch
Q 044718           34 EEPCIKCNRR-DENLLVCSQSGCLISVHENCLSCGV---EFDDVGNFYRPYCW   82 (236)
Q Consensus        34 qD~CikC~kd-Gq~LL~CSg~GCPlsvH~sCLgssp---~fDD~GnFYCPyC~   82 (236)
                      ...|..|++. |- .+.|...+|..+||..|.-...   .+++...+|..||.
T Consensus        36 ~~~C~~C~~~~Ga-~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~   87 (90)
T PF13771_consen   36 KLKCSICKKKGGA-CIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCP   87 (90)
T ss_pred             CCCCcCCCCCCCe-EEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEECh
Confidence            4689999999 88 9999999999999999987532   23333345666653

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=91.56  E-value=0.086  Score=51.73  Aligned_cols=67  Identities=18%  Similarity=0.297  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCccceecCCC--CC--eEEeeCCCCccccccccccCCCCc----cCCCCCcccccchhchHHHHHHHHH
Q 044718           25 DFMDVDLLEEEPCIKCNRR--DE--NLLVCSQSGCLISVHENCLSCGVE----FDDVGNFYRPYCWYKCELMRTKELR   94 (236)
Q Consensus        25 ~~~~~e~~~qD~CikC~kd--Gq--~LL~CSg~GCPlsvH~sCLgssp~----fDD~GnFYCPyC~YKkav~~y~eaK   94 (236)
                      +|..-...+.. |..|.-.  |.  ++|.|+  +|---||.-|.-+..+    =|+...|||-.|-+.........++
T Consensus       160 ~wD~~~~~n~q-c~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~  234 (464)
T KOG4323|consen  160 DWDSGHKVNLQ-CSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLR  234 (464)
T ss_pred             ccCccccccce-eeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccc
Confidence            34444444444 8888733  32  599999  9999999999985322    2478899999999998777766665

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=91.38  E-value=0.078  Score=57.18  Aligned_cols=64  Identities=14%  Similarity=-0.012  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccc-cccC--CCCccCCCCCcccccchhch
Q 044718           20 SGRSGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHE-NCLS--CGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        20 ~g~S~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~-sCLg--ssp~fDD~GnFYCPyC~YKk   85 (236)
                      .+..|-....=|+..+-|+.|++++. +|+|. +.||..||. .||+  .--.+...|=|+||.|...+
T Consensus       414 ~iG~dr~gr~ywfi~rrl~Ie~~det-~l~yy-sT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq  480 (1414)
T KOG1473|consen  414 PIGRDRYGRKYWFISRRLRIEGMDET-LLWYY-STCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ  480 (1414)
T ss_pred             CCCcCccccchhceeeeeEEecCCCc-EEEEe-cCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence            34445577788999999999999999 88888 449999999 9999  33345589999999999774

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=90.77  E-value=0.12  Score=45.28  Aligned_cols=44  Identities=27%  Similarity=0.615  Sum_probs=32.1

Q ss_pred             cceecCC------CCCeEEeeCCCCccccccccccCCCCccC------CCCCcc--cccch
Q 044718           36 PCIKCNR------RDENLLVCSQSGCLISVHENCLSCGVEFD------DVGNFY--RPYCW   82 (236)
Q Consensus        36 ~CikC~k------dGq~LL~CSg~GCPlsvH~sCLgssp~fD------D~GnFY--CPyC~   82 (236)
                      .|-.|+.      .|. |+.|-  ||.++||..|||....=+      ..++|-  |-+|.
T Consensus         1 ~C~~C~~~g~~~~kG~-Lv~CQ--GCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci   58 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGP-LVYCQ--GCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI   58 (175)
T ss_pred             CcccccCCCCCccCCC-eEEcC--ccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence            3777853      455 99999  999999999999643322      556663  77775

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=87.88  E-value=0.36  Score=52.42  Aligned_cols=54  Identities=19%  Similarity=0.307  Sum_probs=46.2

Q ss_pred             CCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718           27 MDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        27 ~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      +.....-.|.|..|...|+ ||||-  .||..||-+|.-.+..--++..|-|-.|.+
T Consensus       337 se~~~~~ddhcrf~~d~~~-~lc~E--t~prvvhlEcv~hP~~~~~s~~~e~evc~~  390 (1414)
T KOG1473|consen  337 SEGEIEYDDHCRFCHDLGD-LLCCE--TCPRVVHLECVFHPRFAVPSAFWECEVCNI  390 (1414)
T ss_pred             cccceeecccccccCcccc-eeecc--cCCceEEeeecCCccccCCCccchhhhhhh
Confidence            3445567789999999999 99999  999999999999766656899999999884

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=84.20  E-value=0.62  Score=35.34  Aligned_cols=33  Identities=24%  Similarity=0.615  Sum_probs=28.7

Q ss_pred             CCccceecCCC-CCeEEeeCCCCccccccccccCC
Q 044718           33 EEEPCIKCNRR-DENLLVCSQSGCLISVHENCLSC   66 (236)
Q Consensus        33 ~qD~CikC~kd-Gq~LL~CSg~GCPlsvH~sCLgs   66 (236)
                      -...|..|+.. |- ++.|+..+|..+||..|...
T Consensus        54 ~~~~C~iC~~~~G~-~i~C~~~~C~~~fH~~CA~~   87 (110)
T PF13832_consen   54 FKLKCSICGKSGGA-CIKCSHPGCSTAFHPTCARK   87 (110)
T ss_pred             cCCcCcCCCCCCce-eEEcCCCCCCcCCCHHHHHH
Confidence            35789999996 55 99999999999999999864

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=82.81  E-value=0.64  Score=48.54  Aligned_cols=51  Identities=31%  Similarity=0.757  Sum_probs=41.5

Q ss_pred             CccceecCCCCCe-------EEeeCCCCccccccccccCC-CCccCCCCC-----cccccchhc
Q 044718           34 EEPCIKCNRRDEN-------LLVCSQSGCLISVHENCLSC-GVEFDDVGN-----FYRPYCWYK   84 (236)
Q Consensus        34 qD~CikC~kdGq~-------LL~CSg~GCPlsvH~sCLgs-sp~fDD~Gn-----FYCPyC~YK   84 (236)
                      ...|+.|+..|..       -+.|...+|--+||..|.-+ .+-++++|+     -||-||.|-
T Consensus       117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H  180 (900)
T KOG0956|consen  117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH  180 (900)
T ss_pred             cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence            4579999998773       78999999999999999865 355566666     499999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.3
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.28
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.26
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.26
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.25
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.24
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.24
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.18
2yt5_A	66	Metal-response element-binding transcription facto	99.18
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.18
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.15
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.14
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.13
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.1
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	98.99
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.97
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	98.95
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	98.94
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	98.86
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	98.8
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.79
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.78
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.72
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	98.71
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.69
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.67
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.64
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.63
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.63
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.62
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.58
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.52
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.51
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.41
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.2
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.11
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.04
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.92
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.68
1wee_A	72	PHD finger family protein; structural genomics, PH	97.65
1wew_A	78	DNA-binding family protein; structural genomics, P	97.58
1we9_A	64	PHD finger family protein; structural genomics, PH	97.49
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.44
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	97.22
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	96.94
1wem_A	76	Death associated transcription factor 1; structura	96.92
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	96.9
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	96.72
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	96.67
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	96.22
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	95.35
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	95.12
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	94.08
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	93.32
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	92.96
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	92.65
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	92.42
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.18
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	92.05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	89.74
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	88.58
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	84.9
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	84.53
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	84.03
2co8_A	82	NEDD9 interacting protein with calponin homology a	80.31

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=91.52  Aligned_cols=56  Identities=21%  Similarity=0.465  Sum_probs=48.9

Q ss_pred             CCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           26 FMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        26 ~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      +...+..+++.|.+|+..|+ ||.|+  +|+.+||..|++.+++..+.|+||||.|..+
T Consensus         3 ~~~~~~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            3 LGSYETDHQDYCEVCQQGGE-IILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CSCCSSCCCSSCTTTSCCSS-EEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCcccCCCCCCCccCCCCCc-EEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            34445567899999999999 99999  9999999999998777779999999999864

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.28  E-value=1.8e-12  Score=91.91  Aligned_cols=52  Identities=27%  Similarity=0.524  Sum_probs=46.8

Q ss_pred             CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      ..+++.|.+|+..|+ ||.|+  +|+.+||..|+++++...|.|+||||.|..++
T Consensus         5 ~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~   56 (66)
T 1xwh_A            5 QKNEDECAVCRDGGE-LICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT   56 (66)
T ss_dssp             CSCCCSBSSSSCCSS-CEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred             CCCCCCCccCCCCCC-EEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence            347899999999999 99999  99999999999987777799999999998654

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.26  E-value=2.8e-12  Score=90.06  Aligned_cols=52  Identities=29%  Similarity=0.455  Sum_probs=46.6

Q ss_pred             CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      ..+++.|.+|+..|+ ||+|+  +|+.+||..|++.+++-.+.|+||||.|..+.
T Consensus         6 d~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            6 DHHMEFCRVCKDGGE-LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCSSCTTTCCCSS-CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCCCcCCCCCCCCC-EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            347889999999998 99999  99999999999988777799999999998653

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.7e-12  Score=88.25  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=45.6

Q ss_pred             CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      +..+++.|.+|+..|+ ||.|+  +|+.+||..|++++++..|.|+||||.|.
T Consensus         5 ~~~~~~~C~vC~~~g~-ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~   54 (56)
T 2yql_A            5 SSGHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQ   54 (56)
T ss_dssp             CCSSCCSCSSSCCSSC-CEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred             cCCCCCCCccCCCCCe-EEEcC--CCCcceECccCCCCcCCCCCCceEChhhh
Confidence            3457889999999999 99999  99999999999988887899999999996

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=89.72  Aligned_cols=50  Identities=26%  Similarity=0.567  Sum_probs=45.6

Q ss_pred             CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+++.|.+|+..|+ ||.|+  +|+.+||..|++++++..|.|+||||.|..+
T Consensus         3 ~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   52 (60)
T 2puy_A            3 IHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ   52 (60)
T ss_dssp             CCCSSCTTTCCCSS-CEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred             CCCCCCcCCCCCCc-EEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence            36789999999999 99999  9999999999998888789999999999754

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.24  E-value=3e-12  Score=96.05  Aligned_cols=65  Identities=20%  Similarity=0.430  Sum_probs=50.8

Q ss_pred             ccCCCCCCCCCCCCCCCCccceecCCCC-----CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718           17 HSGSGRSGDFMDVDLLEEEPCIKCNRRD-----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        17 ~s~~g~S~~~~~~e~~~qD~CikC~kdG-----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka   86 (236)
                      |.-+|.+.........+++.|.+|+..|     + ||+|+  +|+.+||..|++.+  ..|.|+||||.|..+..
T Consensus         8 Rk~~~~~~g~~~~~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~   77 (88)
T 2l43_A            8 RKSTGGSSGSSQSLIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA   77 (88)
T ss_dssp             CCTTCSCTTTTTCCCCCCCCCSSCCSSSSCSEEE-EEECS--SSCCCCCHHHHTCS--SCCSSCCCCHHHHHHTT
T ss_pred             ccccCCCCCCCCCcCCCCCcCCcCCCCCCCCCCC-EEECC--CCCchhhcccCCCC--ccCCCceECccccCccc
Confidence            3334444444444556889999999887     6 99999  99999999999954  57899999999987643

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.24  E-value=4.7e-12  Score=96.65  Aligned_cols=55  Identities=15%  Similarity=0.276  Sum_probs=48.4

Q ss_pred             CCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           28 DVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        28 ~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .....+.+.|.+|+..|+ ||+|+  +||.+||..|+.++++--|.|+||||.|.+..
T Consensus        19 ~~~d~n~~~C~vC~~~g~-LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           19 GTLDDSATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             CSSSSSSSCCSSSCSSSC-CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             cccCCCCCcCcCcCCCCC-EEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            334457889999999999 99999  99999999999988877799999999998654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.18  E-value=7.1e-12  Score=90.16  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             CCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           31 LLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        31 ~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ..+...|.+|+..|+ ||+|+  +|+.+||..|+.+++.-.+.|+||||.|.-.
T Consensus         9 ~~~~~~C~vC~~~~~-ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C            9 LAPGARCGVCGDGTD-VLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             CCTTCCCTTTSCCTT-CEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCCcCCCCCCCe-EEECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence            446678999999999 99999  9999999999998888889999999999743

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.18  E-value=4e-12  Score=88.76  Aligned_cols=54  Identities=17%  Similarity=0.428  Sum_probs=46.1

Q ss_pred             CCCCccceecCCC-----CCeEEeeCCCCccccccccccCCCCcc---CCCCCcccccchhchHH
Q 044718           31 LLEEEPCIKCNRR-----DENLLVCSQSGCLISVHENCLSCGVEF---DDVGNFYRPYCWYKCEL   87 (236)
Q Consensus        31 ~~~qD~CikC~kd-----Gq~LL~CSg~GCPlsvH~sCLgssp~f---DD~GnFYCPyC~YKkav   87 (236)
                      ..+++.|.+|+..     ++ ||+|+  +|+.+||..|+++++..   .+.|+||||.|..+.+.
T Consensus         3 ~~~~~~C~vC~~~~~~~~~~-ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~   64 (66)
T 2yt5_A            3 SGSSGVCTICQEEYSEAPNE-MVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT   64 (66)
T ss_dssp             CCCCCCBSSSCCCCCBTTBC-EEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCC-EEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence            4578899999987     67 99999  99999999999976553   38999999999877653

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.18  E-value=8.5e-12  Score=103.35  Aligned_cols=53  Identities=23%  Similarity=0.407  Sum_probs=47.8

Q ss_pred             CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      +..+++.|..|+.+|+ ||+|+  +|+.+||..|+.+++.-.|.|+||||.|.-..
T Consensus         3 ~d~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            3 DDPNEDWCAVCQNGGD-LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             CCSSCSSBTTTCCCEE-EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCCCCCc-eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            4458899999999999 99999  99999999999988887899999999998654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.15  E-value=1.5e-11  Score=99.76  Aligned_cols=51  Identities=24%  Similarity=0.447  Sum_probs=46.4

Q ss_pred             CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .+++.|.+|+.+|+ ||+|+  +|+.+||..|+.+++...+.|+|+||.|.-+.
T Consensus         2 ~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            2 PNEDWCAVCQNGGE-LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSCSSCTTTCCCSS-CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCccccCCCCCe-eeecC--CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            37789999999999 99999  99999999999988777799999999998654

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.4e-11  Score=89.62  Aligned_cols=54  Identities=20%  Similarity=0.483  Sum_probs=45.8

Q ss_pred             CCCCCCCccceecCCCC-----CeEEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718           28 DVDLLEEEPCIKCNRRD-----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        28 ~~e~~~qD~CikC~kdG-----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka   86 (236)
                      .....+.+.|.+|+..+     + ||+|+  +|+.+||..|++.  +..|+|+||||.|..++.
T Consensus        10 ~~~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~~H~~Cl~~--~~vP~g~W~C~~C~~~~~   68 (71)
T 2ku3_A           10 QSLIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGV--PYIPEGQWLCRHCLQSRA   68 (71)
T ss_dssp             CCCCCSSCSCSSSCCCCCCSSSC-EEECS--SSCCEEEHHHHTC--SSCCSSCCCCHHHHHHHH
T ss_pred             ccCCCCCCCCCCCCCCCCCCCCC-EEECC--CCCCccccccCCC--CcCCCCCcCCccCcCcCc
Confidence            34566889999999876     5 99999  9999999999995  457899999999986543

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.1e-11  Score=91.01  Aligned_cols=56  Identities=29%  Similarity=0.501  Sum_probs=47.7

Q ss_pred             CCCCCCCCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718           26 FMDVDLLEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        26 ~~~~e~~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      -+.....+.+.|.+|+..++  .||+|+  +|+.+||..|+++++...|.|+||||.|..
T Consensus         8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~   65 (92)
T 2e6r_A            8 HSSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCIL   65 (92)
T ss_dssp             CCCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred             CchhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcC
Confidence            44455567889999999874  399999  999999999999888778999999999964

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.10  E-value=2.9e-11  Score=90.35  Aligned_cols=51  Identities=22%  Similarity=0.438  Sum_probs=43.6

Q ss_pred             CCccceecCCC-----CCeEEeeCCCCccccccccccCCCCcc----CCCCCcccccchhchH
Q 044718           33 EEEPCIKCNRR-----DENLLVCSQSGCLISVHENCLSCGVEF----DDVGNFYRPYCWYKCE   86 (236)
Q Consensus        33 ~qD~CikC~kd-----Gq~LL~CSg~GCPlsvH~sCLgssp~f----DD~GnFYCPyC~YKka   86 (236)
                      +.+.|.+|+..     ++ ||+|+  +|+.+||..|+++++.-    .+.|+||||.|..+..
T Consensus        15 ~~~~C~vC~~~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~   74 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQ-LVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCC-EEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             CCCcCCCCCCCCCCCCCc-eEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence            56799999987     56 99999  99999999999976652    6899999999986543

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=98.99  E-value=1.3e-10  Score=96.18  Aligned_cols=48  Identities=17%  Similarity=0.418  Sum_probs=44.3

Q ss_pred             CccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        34 qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ++.|.+|+.+|+ ||+|+  +|+.+||..|+.+++.-.+.|+|+||.|..+
T Consensus         2 ~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCCSS-CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCCCc-eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence            478999999999 99999  9999999999998777779999999999876

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.97  E-value=3.5e-10  Score=92.43  Aligned_cols=80  Identities=18%  Similarity=0.309  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCc---c----CCCCCcccccchhchHHHHHHHHHH
Q 044718           23 SGDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVE---F----DDVGNFYRPYCWYKCELMRTKELRK   95 (236)
Q Consensus        23 S~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~---f----DD~GnFYCPyC~YKkav~~y~eaKK   95 (236)
                      ++.++-++..+++.|..|+.+|+ ||+|+  .||.+||.+|+..++.   +    .++|+|+||.|..+..    ..+++
T Consensus        52 ~~~~~~d~Dg~~d~C~vC~~GG~-LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl----~~l~~  124 (142)
T 2lbm_A           52 SDDISRDSDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL----LDLVT  124 (142)
T ss_dssp             HSCCCBCTTSCBCSCSSSCCCSS-EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT----HHHHH
T ss_pred             cCCceecCCCCCCeecccCCCCc-EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH----HHHHH
Confidence            45566677789999999999999 99999  9999999999995443   1    4899999999986532    33444


Q ss_pred             HHHHHHHHHHhhhc
Q 044718           96 KAMETKKKLACFID  109 (236)
Q Consensus        96 kA~~AKKeLssFL~  109 (236)
                      .....=..|..++.
T Consensus       125 ~c~~~~~~~~~~~~  138 (142)
T 2lbm_A          125 ACNSVFENLEQLLQ  138 (142)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444455665554

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=98.95  E-value=4e-10  Score=88.02  Aligned_cols=51  Identities=24%  Similarity=0.578  Sum_probs=45.0

Q ss_pred             CCCCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718           30 DLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        30 e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      ...+++.|..|+..|+ ||.|+..+||.+||..|++  +.-.|.|+||||.|.-
T Consensus        11 ~~~~~~~C~~C~~~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C   61 (107)
T 4gne_A           11 KQMHEDYCFQCGDGGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC   61 (107)
T ss_dssp             CCSSCSSCTTTCCCSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred             cCCCCCCCCcCCCCCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence            3458899999999998 9999988999999999999  6667899999998863

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.94  E-value=2e-10  Score=76.96  Aligned_cols=45  Identities=27%  Similarity=0.584  Sum_probs=39.1

Q ss_pred             cceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           36 PCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        36 ~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      .|.+|+..|+  .||.|+  +|+.+||..|+.+++.-.|.|+||||.|.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~   48 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence            5888887663  399999  99999999999987777799999999996

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=80.10  Aligned_cols=45  Identities=24%  Similarity=0.534  Sum_probs=40.3

Q ss_pred             ccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccch
Q 044718           35 EPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCW   82 (236)
Q Consensus        35 D~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~   82 (236)
                      ..|.+|+.   .++ ||+|+  +|+.+||..||++++...|+| +||||.|.
T Consensus        27 c~C~vC~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           27 CSCRVCGGKHEPNM-QLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSCSSSCCCCCSTT-EEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred             CCCcCcCCcCCCCC-EEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence            48899996   455 99999  999999999999888888999 99999996

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=98.80  E-value=1.7e-09  Score=78.05  Aligned_cols=45  Identities=27%  Similarity=0.595  Sum_probs=39.4

Q ss_pred             cceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccchh
Q 044718           36 PCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCWY   83 (236)
Q Consensus        36 ~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~Y   83 (236)
                      .|.+|+.   .|+ ||.|+  +|+.+||..||++++...|+| +||||.|..
T Consensus        20 ~C~~C~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGG-EEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCC-EEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            6778886   445 99999  999999999999888878999 999999973

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.79  E-value=1.7e-09  Score=77.18  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=44.8

Q ss_pred             CCCCCCCCccceecCCC--CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           27 MDVDLLEEEPCIKCNRR--DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        27 ~~~e~~~qD~CikC~kd--Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+++..+...|..|+..  |..+|.|+  +|+..||..|++.+..-.+.|.||||.|..+
T Consensus        11 ~~~~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~   68 (75)
T 2k16_A           11 RDEWGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK   68 (75)
T ss_dssp             ECSSSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred             ccccCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence            34444566789999987  32399999  9999999999998766667799999999754

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.78  E-value=5.8e-09  Score=75.74  Aligned_cols=59  Identities=27%  Similarity=0.543  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCCCccceecCC--CCCeEEeeCCCCccc-cccccccCCCCccCCCCCcccccchhch
Q 044718           23 SGDFMDVDLLEEEPCIKCNR--RDENLLVCSQSGCLI-SVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        23 S~~~~~~e~~~qD~CikC~k--dGq~LL~CSg~GCPl-svH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      |+.-.+.+..+...| .|+.  .|+ +|.|++.+|++ .||..|++  ++-.+.|.||||.|..++
T Consensus         5 ~~~~~~~d~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A            5 SSGDMPVDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   66 (71)
T ss_dssp             CSSCCCCCTTSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred             cccccccCCCCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence            444555666688899 4999  687 99999555995 99999999  555678999999997654

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.72  E-value=4.8e-09  Score=80.73  Aligned_cols=46  Identities=33%  Similarity=0.702  Sum_probs=40.5

Q ss_pred             ccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchh
Q 044718           35 EPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        35 D~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      ..|.+|+.   +++ ||.|+  +|+.+||..||++++...|+|+||||.|..
T Consensus        59 ~~C~~C~~~~~~~~-ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~  107 (114)
T 2kwj_A           59 KSCILCGTSENDDQ-LLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE  107 (114)
T ss_dssp             CCCTTTTCCTTTTT-EEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred             CccCcccccCCCCc-eEEcC--CCCccccccccCCCccCCCCCCeECccccc
Confidence            36888887   456 99999  999999999999888888999999999964

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=98.71  E-value=6.3e-09  Score=76.96  Aligned_cols=45  Identities=27%  Similarity=0.646  Sum_probs=39.2

Q ss_pred             cceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCC-cccccch
Q 044718           36 PCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGN-FYRPYCW   82 (236)
Q Consensus        36 ~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~Gn-FYCPyC~   82 (236)
                      .|.+|+..++  .||+|+  +|+.+||..||.+++...|.|+ ||||.|.
T Consensus        28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred             cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence            5777777743  399999  9999999999998888889999 9999996

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.69  E-value=7.2e-09  Score=79.35  Aligned_cols=46  Identities=20%  Similarity=0.471  Sum_probs=40.4

Q ss_pred             CccceecCCCC----CeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           34 EEPCIKCNRRD----ENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        34 qD~CikC~kdG----q~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      -..|.+|+..|    + ||.|+  +|+.+||..||.+++...|+|+||||.|.
T Consensus        61 C~~C~vC~~~~~~~~~-ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~  110 (112)
T 3v43_A           61 CKTCSSCRDQGKNADN-MLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICR  110 (112)
T ss_dssp             TCCBTTTCCCCCTTCC-CEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred             CCccccccCcCCCccc-eEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence            33688888764    5 99999  99999999999988888899999999996

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.67  E-value=6.4e-09  Score=73.06  Aligned_cols=52  Identities=23%  Similarity=0.547  Sum_probs=40.0

Q ss_pred             CCCCCCccceecCC--CCCeEEeeCCCCccc-cccccccCCCCccCCCCCcccccchhc
Q 044718           29 VDLLEEEPCIKCNR--RDENLLVCSQSGCLI-SVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCPl-svH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+..+...| .|++  .|+ ++.|++.+|++ .||.+|++  ++-.+.|.||||.|.-+
T Consensus         4 ~d~~e~~yC-~C~~~~~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            4 RGSNEPTYC-LCHQVSYGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE   58 (59)
T ss_dssp             ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred             cCCCCCcEE-ECCCCCCCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence            345567788 7998  777 99999555995 99999999  55567899999999754

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=89.19  Aligned_cols=46  Identities=26%  Similarity=0.557  Sum_probs=37.7

Q ss_pred             CccceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCC-Ccccccch
Q 044718           34 EEPCIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVG-NFYRPYCW   82 (236)
Q Consensus        34 qD~CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~G-nFYCPyC~   82 (236)
                      ...|..|+.   .++ ||+|+  +|+.+||..||++++.--|.| +||||.|.
T Consensus       174 ~c~C~vC~~~~~~~~-lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          174 VCACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCSSSCCCCC--C-CEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred             CCCCcCCCCCCCCCC-eEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence            447999998   455 99999  999999999999888877999 99999996

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.63  E-value=1.1e-08  Score=82.67  Aligned_cols=66  Identities=18%  Similarity=0.348  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCC------c-cCCCCCcccccchhchHHHHHHHH
Q 044718           24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGV------E-FDDVGNFYRPYCWYKCELMRTKEL   93 (236)
Q Consensus        24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp------~-fDD~GnFYCPyC~YKkav~~y~ea   93 (236)
                      +.++-++..+++.|..|+.+|+ ||+|+  .||.+||.+|+...+      . .++.|.|+|+.|.- .+...++.+
T Consensus        47 ~~~~~d~Dg~~~~C~vC~dGG~-LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~-~pl~~L~~~  119 (129)
T 3ql9_A           47 DDISRDSDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP-EPLLDLVTA  119 (129)
T ss_dssp             SCCCBCTTSCBSSCTTTCCCSE-EEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC-GGGHHHHHH
T ss_pred             cccccCCCCCCCcCeecCCCCe-eEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC-HHHHHHHHH
Confidence            4577777889999999999999 99998  999999999999432      1 24799999999974 444444443

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=76.59  Aligned_cols=48  Identities=23%  Similarity=0.477  Sum_probs=42.2

Q ss_pred             CCCccceecCCCCCeE---EeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           32 LEEEPCIKCNRRDENL---LVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        32 ~~qD~CikC~kdGq~L---L~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      .+++.|.+|+..|+ |   |.|+  +|+.+||..||+.+..-.+.+.|+||.|.
T Consensus         5 ~~~~~C~~C~~~g~-~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGD-LLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCC-TTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCC-CcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence            37899999999998 6   9998  99999999999976554567999999996

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.62  E-value=1.1e-08  Score=71.74  Aligned_cols=52  Identities=25%  Similarity=0.561  Sum_probs=39.1

Q ss_pred             CCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhc
Q 044718           29 VDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+..+...| .|+.  .|+ +|.|++-.|+ -.||..|++  ++-.+.|.||||.|.-+
T Consensus         5 ~d~~e~~~C-~C~~~~~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A            5 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE   59 (60)
T ss_dssp             ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred             cCCCCCCEE-ECCCcCCCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence            344567788 6998  677 9999954599 589999999  55667899999999754

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.58  E-value=1.5e-08  Score=76.58  Aligned_cols=49  Identities=22%  Similarity=0.447  Sum_probs=42.7

Q ss_pred             ccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           35 EPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        35 D~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      ..|.+|+..++  .||.|+  +|+.+||..||.+++...|+|+||||.|...+
T Consensus        55 ~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           55 KVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             CCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             CcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence            37889998875  499999  99999999999988877799999999997653

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.52  E-value=3.1e-08  Score=70.25  Aligned_cols=54  Identities=28%  Similarity=0.604  Sum_probs=40.5

Q ss_pred             CCCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhch
Q 044718           28 DVDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        28 ~~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      +.+..+...| .|+.  .|+ ++.|++-.|| -.||.+|++  ++-.+.|.||||.|..++
T Consensus         5 ~~d~~e~~yC-~C~~~~~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~r   61 (62)
T 2g6q_A            5 AIDPNEPTYC-LCNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN   61 (62)
T ss_dssp             -----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTCC
T ss_pred             ccCCCCCcEE-ECCCCCCCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccCC
Confidence            3455567788 7999  787 9999955599 799999999  455678999999997553

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.51  E-value=2.4e-07  Score=70.19  Aligned_cols=46  Identities=13%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             cceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           36 PCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        36 ~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      +|.++..+|. +|.|+  +|+..||..|++.+..-.+ ..||||.|.-+.
T Consensus        32 iC~~~~~~~~-mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~   77 (98)
T 2lv9_A           32 ICGFTHDDGY-MICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN   77 (98)
T ss_dssp             TTSCCSCSSC-EEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred             ECCCccCCCc-EEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence            3555555666 99999  9999999999997644333 589999997543

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.41  E-value=1.3e-07  Score=72.24  Aligned_cols=53  Identities=25%  Similarity=0.551  Sum_probs=41.9

Q ss_pred             CCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhch
Q 044718           29 VDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        29 ~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .+..+...| .|+.  .|+ ++.|+...|+ -.||..|++  ++-.+.|.||||.|..++
T Consensus        31 ~d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           31 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             cCCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            444566778 8998  777 9999955599 489999999  555678999999997654

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.20  E-value=6.8e-07  Score=68.13  Aligned_cols=52  Identities=21%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             CCCCCCCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCccccc-ch
Q 044718           27 MDVDLLEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPY-CW   82 (236)
Q Consensus        27 ~~~e~~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPy-C~   82 (236)
                      +.++..+...| .|+.  .|+ ++.|+.-.|| -.||..|++  ++-.+.|.||||. |.
T Consensus        19 ~~~~~~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           19 EGNNNQEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK   74 (90)
T ss_dssp             -----CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred             CCCCCCCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence            33445567788 6996  677 9999966688 589999999  5556789999999 85

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.11  E-value=4.7e-07  Score=69.61  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             ccceecCCCC---------CeEEeeCCCCccccccccccCCCCc---cCCCCCcccccch
Q 044718           35 EPCIKCNRRD---------ENLLVCSQSGCLISVHENCLSCGVE---FDDVGNFYRPYCW   82 (236)
Q Consensus        35 D~CikC~kdG---------q~LL~CSg~GCPlsvH~sCLgssp~---fDD~GnFYCPyC~   82 (236)
                      +.|..|..++         ..||.|+  +|+.+||.+||+.++.   ..+.+.|+||.|.
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence            5788886543         1399999  9999999999997543   3478999999995

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.04  E-value=6.9e-07  Score=68.32  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CCCccceecCCCC--------CeEEeeCCCCccccccccccCCCCcc---CCCCCcccccch
Q 044718           32 LEEEPCIKCNRRD--------ENLLVCSQSGCLISVHENCLSCGVEF---DDVGNFYRPYCW   82 (236)
Q Consensus        32 ~~qD~CikC~kdG--------q~LL~CSg~GCPlsvH~sCLgssp~f---DD~GnFYCPyC~   82 (236)
                      ++..+|..|.+.+        ++||.|+  +|+.+||.+||+.++..   .+.++|+||.|.
T Consensus         3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            3 EPIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             ccCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            4678899996542        2399999  99999999999864332   368999999997

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5.1e-06  Score=60.08  Aligned_cols=49  Identities=27%  Similarity=0.552  Sum_probs=38.1

Q ss_pred             CCCccceecCC--CCCeEEeeCCCCcc-ccccccccCCCCccCCCCCcccccchhc
Q 044718           32 LEEEPCIKCNR--RDENLLVCSQSGCL-ISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        32 ~~qD~CikC~k--dGq~LL~CSg~GCP-lsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+...|+ |+.  .|. ++.|+.-.|| --||..|++.  +-.+.|.||||.|.-+
T Consensus         4 ~~~~yC~-C~~~~~g~-MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~   55 (70)
T 1x4i_A            4 GSSGYCI-CNQVSYGE-MVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA   55 (70)
T ss_dssp             SCCCCST-TSCCCCSS-EECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred             CCCeEEE-cCCCCCCC-EeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence            3566786 876  566 9999966687 6899999994  4467899999999743

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.68  E-value=8.9e-06  Score=64.88  Aligned_cols=53  Identities=15%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             CCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhchHH
Q 044718           32 LEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKCEL   87 (236)
Q Consensus        32 ~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKkav   87 (236)
                      .+...| .|+..+   ..++.|+  +|+.-||..|++.+.. .+..+.|+||.|.-+...
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~   62 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA   62 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcchhcc
Confidence            466788 898853   2388898  9999999999997543 346899999999876543

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.65  E-value=4.8e-05  Score=54.14  Aligned_cols=51  Identities=22%  Similarity=0.408  Sum_probs=38.4

Q ss_pred             CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .....|+ |+..   |...+.|+  .|-.=||..|++.+..-...+.||||.|.-++
T Consensus        14 ~~~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~   67 (72)
T 1wee_A           14 NWKVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             SSEECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             CcceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence            3456795 9975   43378888  89999999999976433346899999997543

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.58  E-value=5e-05  Score=55.07  Aligned_cols=52  Identities=19%  Similarity=0.425  Sum_probs=39.4

Q ss_pred             CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc-----CCCCCcccccchhch
Q 044718           32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF-----DDVGNFYRPYCWYKC   85 (236)
Q Consensus        32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f-----DD~GnFYCPyC~YKk   85 (236)
                      .+...| .|+..   |. .+.|+...|..=+|..|++.+..-     +....||||.|..++
T Consensus        14 ~~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           14 EIKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             CCCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            356788 59986   44 777887799999999999965432     235799999998654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.49  E-value=5.4e-05  Score=52.29  Aligned_cols=53  Identities=19%  Similarity=0.402  Sum_probs=40.6

Q ss_pred             CCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhchH
Q 044718           32 LEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        32 ~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKka   86 (236)
                      .+...|..|++..   ...+.|+  .|..=||..|++.+.. .+..+.|+||.|.-+++
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~   60 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence            3667898898752   3378888  9999999999997543 23358999999986653

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.44  E-value=5.9e-05  Score=57.82  Aligned_cols=55  Identities=16%  Similarity=0.370  Sum_probs=41.7

Q ss_pred             CccceecCCC----CCeEEeeCCCCccccccccccCCCCcc------CCCCCcccccchhchHHHHH
Q 044718           34 EEPCIKCNRR----DENLLVCSQSGCLISVHENCLSCGVEF------DDVGNFYRPYCWYKCELMRT   90 (236)
Q Consensus        34 qD~CikC~kd----Gq~LL~CSg~GCPlsvH~sCLgssp~f------DD~GnFYCPyC~YKkav~~y   90 (236)
                      ...|..|.+.    |. .+.|+ ++|.-=||..|++.+...      ++.+.|+||.|.-++.....
T Consensus         3 ~~~C~iC~~p~~~~~~-mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~   67 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQD-AILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGS   67 (105)
T ss_dssp             CCBCTTTCSBCCTTSC-EEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC--
T ss_pred             cCCCCCCCCccCCCCC-EEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCC
Confidence            4578899887    45 78887 699999999999965321      56699999999987654433

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=97.22  E-value=0.00034  Score=49.45  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=37.1

Q ss_pred             CCccceecCCC---CCeEEeeCCCCccccccccccCCCCccC----CCCCcccccchhchH
Q 044718           33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFD----DVGNFYRPYCWYKCE   86 (236)
Q Consensus        33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fD----D~GnFYCPyC~YKka   86 (236)
                      +.-.|+ |+..   |. .+.|++..|..=+|..|++.+..-.    ....||||.|..+++
T Consensus         9 ~~v~C~-C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~   67 (68)
T 2rsd_A            9 AKVRCI-CSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA   67 (68)
T ss_dssp             CEECCT-TCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred             CCEEeE-CCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence            456684 8664   44 8889866799999999999643221    224799999987653

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=96.94  E-value=0.00063  Score=48.71  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=37.7

Q ss_pred             CCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           32 LEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        32 ~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+...| .|++..+  ..+.|+  .|..=||.+|++.+.. ...+.|+||.|.-+
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s   67 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS   67 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred             CCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence            356678 8887533  378898  8999999999997654 34579999999643

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.92  E-value=0.0003  Score=50.25  Aligned_cols=49  Identities=16%  Similarity=0.432  Sum_probs=36.9

Q ss_pred             CCccceecCCCCC--eEEeeCCCCccccccccccCCCCcc-----CCCCCcccccchhc
Q 044718           33 EEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEF-----DDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~f-----DD~GnFYCPyC~YK   84 (236)
                      +...| .|++...  ..+.|+  .|..=||..|++.+..-     +....|+||.|..+
T Consensus        15 ~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A           15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence            34678 6998743  378888  89999999999965432     13589999999754

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.90  E-value=0.00045  Score=49.89  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=40.2

Q ss_pred             CCCCCCCCCCCccceecCCCC---CeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchhch
Q 044718           24 GDFMDVDLLEEEPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWYKC   85 (236)
Q Consensus        24 ~~~~~~e~~~qD~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~YKk   85 (236)
                      +.+.+++  +...| .|+...   ...+.|+  .|..=||..|++.+.. .+....|+||.|.-+.
T Consensus         4 ~~~~~~~--~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A            4 GSSGMAL--VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCCC--CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CccCccC--CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            3444444  45567 788853   2378898  8999999999996543 2235899999998553

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=96.72  E-value=0.00024  Score=55.19  Aligned_cols=49  Identities=22%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCCccceecC--CCCCeEEeeCCCCccccccccccCCC------------CccCCCCCcccccch
Q 044718           31 LLEEEPCIKCN--RRDENLLVCSQSGCLISVHENCLSCG------------VEFDDVGNFYRPYCW   82 (236)
Q Consensus        31 ~~~qD~CikC~--kdGq~LL~CSg~GCPlsvH~sCLgss------------p~fDD~GnFYCPyC~   82 (236)
                      ..+++.|-+|+  ..+. |+.|-  -|...||..||...            ..-...+-|.||+|.
T Consensus        12 ~~~D~~C~VC~~~t~~~-l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           12 VVNDEMCDVCEVWTAES-LFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCCSCCCTTTCCCCSSC-CSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCCCcccCccccccccc-eeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            34788999999  5555 99999  99999999999853            334478899999994

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=96.67  E-value=0.00028  Score=50.39  Aligned_cols=50  Identities=18%  Similarity=0.384  Sum_probs=37.6

Q ss_pred             CCCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc------CCCCCcccccch
Q 044718           32 LEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF------DDVGNFYRPYCW   82 (236)
Q Consensus        32 ~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f------DD~GnFYCPyC~   82 (236)
                      .+...|.+|.++   ++..+.|++ +|..=||..|++.+...      ++.+.|+||.|.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CCcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            366789999985   333677874 99999999999976531      477899999995

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=96.22  E-value=0.0011  Score=44.77  Aligned_cols=46  Identities=20%  Similarity=0.479  Sum_probs=32.9

Q ss_pred             cceecCCC---CCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           36 PCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        36 ~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      .|-.|+++   +...+.|++ +|..=||..|++.+..-.+.+.|+||.|.
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence            35566664   333778886 89999999999975443234899999994

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=95.35  E-value=0.0074  Score=50.49  Aligned_cols=52  Identities=19%  Similarity=0.404  Sum_probs=37.4

Q ss_pred             ccceecCCC---CC---eEEeeCCCCccccccccccCCCCc----c---CCCCCcccccchhchHHH
Q 044718           35 EPCIKCNRR---DE---NLLVCSQSGCLISVHENCLSCGVE----F---DDVGNFYRPYCWYKCELM   88 (236)
Q Consensus        35 D~CikC~kd---Gq---~LL~CSg~GCPlsvH~sCLgssp~----f---DD~GnFYCPyC~YKkav~   88 (236)
                      +.|..|++.   ++   ..+.|+  +|..=||.+|++.+..    +   .+...|+||.|.-+....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~   67 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE   67 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred             CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence            467777764   22   278898  9999999999996531    1   123589999999776654

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=95.12  E-value=0.014  Score=39.12  Aligned_cols=40  Identities=18%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             cCCC--CCeEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           40 CNRR--DENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        40 C~kd--Gq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      |+..  |...+.|+  .|..=+|.+|++.+.. ...+.|+||.|.
T Consensus         9 C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~   50 (52)
T 3o7a_A            9 CMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR   50 (52)
T ss_dssp             TCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred             eCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence            6664  32388899  8999999999997654 335799999995

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=94.08  E-value=0.012  Score=41.98  Aligned_cols=47  Identities=21%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             ccceecCCCC---CeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718           35 EPCIKCNRRD---ENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK   84 (236)
Q Consensus        35 D~CikC~kdG---q~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK   84 (236)
                      -.| .|+...   ...+.|+  .|..=||..|++.+..- .....|+||.|.-+
T Consensus        11 ~yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A           11 VYC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             EET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred             eEE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence            345 687742   2388899  89999999999965432 22368999999754

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=93.32  E-value=0.033  Score=41.72  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=27.5

Q ss_pred             EEeeCCCCccccccccccCCCCcc----CCCCCcccccchh
Q 044718           47 LLVCSQSGCLISVHENCLSCGVEF----DDVGNFYRPYCWY   83 (236)
Q Consensus        47 LL~CSg~GCPlsvH~sCLgssp~f----DD~GnFYCPyC~Y   83 (236)
                      ||.|+  .|.-.||..|++.....    +..+.|+||.|.=
T Consensus        75 m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~  113 (117)
T 4bbq_A           75 LMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ  113 (117)
T ss_dssp             CEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred             eEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence            89999  99999999999965332    2345699999963

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=92.96  E-value=0.0059  Score=42.32  Aligned_cols=52  Identities=27%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             CCCccceecCCCCCe--EEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           32 LEEEPCIKCNRRDEN--LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        32 ~~qD~CikC~kdGq~--LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .+.+.|+.|-..++.  ++.|.=.|..-.||..||.  .=+..+|+..||.|.+.-
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~--~W~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLS--TWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHH--HHHHHHTCSBCTTTCCBC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHH--HHHHhCCCCccCCCCCee
Confidence            367889999654442  5666544666699999998  344456889999998753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.65  E-value=0.03  Score=40.62  Aligned_cols=54  Identities=20%  Similarity=0.382  Sum_probs=36.3

Q ss_pred             CCCCccceecCCCCC---e-EEeeCCCCccccccccccCCCCccCCCCCcccccchhchH
Q 044718           31 LLEEEPCIKCNRRDE---N-LLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKCE   86 (236)
Q Consensus        31 ~~~qD~CikC~kdGq---~-LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKka   86 (236)
                      ..+++.|..|-...+   . ++.|.-.|..-.||..||..  =+.-.++..||.|.+.-.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~--Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQ--WIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHH--HHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHH--HHhhCCCCCCCCCCCeee
Confidence            345678999986532   2 44454335568999999983  233346789999987643

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=92.42  E-value=0.071  Score=41.40  Aligned_cols=41  Identities=12%  Similarity=0.140  Sum_probs=35.7

Q ss_pred             CccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCccc
Q 044718           34 EEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYR   78 (236)
Q Consensus        34 qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYC   78 (236)
                      .-.|..|++...  +.|.  .||.+||..|+...+...+.+.|+|
T Consensus        58 ~c~C~~C~k~~~--~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           58 WHQCDECSSAAV--SFCE--FCPHSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             GGBCTTTCSBCC--EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred             CCCCCcCCCCCC--cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence            346889999888  7899  9999999999998888888888876

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.18  E-value=0.029  Score=52.85  Aligned_cols=49  Identities=18%  Similarity=0.411  Sum_probs=35.9

Q ss_pred             CCccceecCCC---CCeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718           33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK   84 (236)
                      +...| .|+..   +...+.|+  .|.-=||..|++.+..- +..+.|+||.|.-+
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~   88 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL   88 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred             CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence            44556 78874   22277888  89999999999965442 23478999999754

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=92.05  E-value=0.039  Score=46.12  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCC--CC-c---cCCCCCcccccchh
Q 044718           24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSC--GV-E---FDDVGNFYRPYCWY   83 (236)
Q Consensus        24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgs--sp-~---fDD~GnFYCPyC~Y   83 (236)
                      +.++-++..-+..|..|+.+|+ ||.|+...|+.+|=.+|+..  .+ .   ...+..|.|=.|.=
T Consensus        69 ~~f~~DeDG~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P  133 (159)
T 3a1b_A           69 CAYQYDDDGYQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH  133 (159)
T ss_dssp             HTTCBCTTSSBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred             cccccCCCCCcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence            3466677778999999999998 99999889999999999873  22 1   23688999988863

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=89.74  E-value=0.07  Score=49.69  Aligned_cols=60  Identities=20%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCCccceecCCCCCeEEeeCCCCccccccccccCCCC------ccCCCCCcccccchhc
Q 044718           24 GDFMDVDLLEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGV------EFDDVGNFYRPYCWYK   84 (236)
Q Consensus        24 ~~~~~~e~~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp------~fDD~GnFYCPyC~YK   84 (236)
                      +.+.-++..-+..|..|+.+|+ |++|+...|+.+|=.+|+..-+      .......|.|=.|.=+
T Consensus        83 ~~f~~D~DG~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~  148 (386)
T 2pv0_B           83 ALFLYDDDGYQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS  148 (386)
T ss_dssp             TTTCBCSSSSBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred             cCcccCCCCCcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence            4566677778999999999999 9999999999999999987311      1235689999999844

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=88.58  E-value=0.2  Score=48.38  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EEeeCCCCccccccccccCCCCcc-CCCCCcccccchhc
Q 044718           47 LLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYK   84 (236)
Q Consensus        47 LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YK   84 (236)
                      .+.|+  +|.-=||..|++.+..- +..+.||||.|.-+
T Consensus        58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~   94 (528)
T 3pur_A           58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH   94 (528)
T ss_dssp             EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred             EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence            56788  99999999999976533 34589999999854

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=84.90  E-value=0.16  Score=47.61  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             ecCCC----CCeEEeeCCCCccccccccccCCCCcc-CCCCCcccccchhchH
Q 044718           39 KCNRR----DENLLVCSQSGCLISVHENCLSCGVEF-DDVGNFYRPYCWYKCE   86 (236)
Q Consensus        39 kC~kd----Gq~LL~CSg~GCPlsvH~sCLgssp~f-DD~GnFYCPyC~YKka   86 (236)
                      .|+..    |. .+.|+  .|.-=+|..|++.+..- .+.+.|+||.|.-+..
T Consensus         9 iC~~~~d~~~~-MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~   58 (447)
T 3kv4_A            9 LCRLPYDVTRF-MIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG   58 (447)
T ss_dssp             TTTEECCTTSC-EEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred             eCCCcCCCCCC-eEEcC--CCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence            56663    44 77888  99999999999965432 2347899999986543

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=84.53  E-value=0.56  Score=34.74  Aligned_cols=32  Identities=31%  Similarity=0.743  Sum_probs=25.5

Q ss_pred             CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+..-|..|+.+..  |.|-  ||                 .|+-||+.||..
T Consensus         6 ee~pWC~ICneDAt--lrC~--gC-----------------dgDLYC~rC~rE   37 (67)
T 2d8v_A            6 SGLPWCCICNEDAT--LRCA--GC-----------------DGDLYCARCFRE   37 (67)
T ss_dssp             CCCSSCTTTCSCCC--EEET--TT-----------------TSEEECSSHHHH
T ss_pred             cCCCeeEEeCCCCe--EEec--CC-----------------CCceehHHHHHH
Confidence            46677999999988  7888  55                 468999999943

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=84.03  E-value=0.9  Score=31.87  Aligned_cols=53  Identities=17%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             CCCCCCCccceecCCC---CCeEEeeCCCCccccccccccCC---CCc-----cCCCCCcccccchhch
Q 044718           28 DVDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSC---GVE-----FDDVGNFYRPYCWYKC   85 (236)
Q Consensus        28 ~~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgs---sp~-----fDD~GnFYCPyC~YKk   85 (236)
                      +..+.....|..|++.   ++ ++.-.    -..||..|+.+   ..+     +...|..||..|..++
T Consensus         9 ~~~~~~~~~C~~C~~~I~~~~-~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~   72 (80)
T 2dj7_A            9 PIKIRGPSHCAGCKEEIKHGQ-SLLAL----DKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQ   72 (80)
T ss_dssp             CCCCSSCSCCTTTCCCCSSSC-CEEET----TEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred             CcCCCCCCCCcCcCCeeCCCe-EEEEC----CcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence            3345577899999984   55 44433    25788888775   122     2356888999887553

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=80.31  E-value=2  Score=30.03  Aligned_cols=52  Identities=19%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             CCCCCCCccceecCCC---CCeEEeeCCCCccccccccccCCC---Ccc--------CCCCCcccccchhc
Q 044718           28 DVDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCG---VEF--------DDVGNFYRPYCWYK   84 (236)
Q Consensus        28 ~~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgss---p~f--------DD~GnFYCPyC~YK   84 (236)
                      .........|..|++.   ++ +|.-.    -..||..|+.+.   .++        ...|.+||..|..+
T Consensus         9 ~~~~~~~~~C~~C~~~I~~~e-~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~   74 (82)
T 2co8_A            9 HQEAGAGDLCALCGEHLYVLE-RLCVN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ   74 (82)
T ss_dssp             CCCCCSSCBCSSSCCBCCTTT-BCCBT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred             CcCCCCCCCCcccCCCcccce-EEEEC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence            3445567899999984   44 44433    257999988752   111        34788999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.17
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.02
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.76
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.74
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.52
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	98.12
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.05
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.84
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.7
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.27
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.21
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	92.12
d2d8va1	54	Zinc finger FYVE domain-containing protein 19 {Mou	82.17

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-12  Score=85.89  Aligned_cols=51  Identities=29%  Similarity=0.490  Sum_probs=45.7

Q ss_pred             CCCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhch
Q 044718           32 LEEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYKC   85 (236)
Q Consensus        32 ~~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YKk   85 (236)
                      .++++|..|+.+|+ ||.|+  +|+.+||..|++..+...+.++||||.|.-+.
T Consensus         7 ~~~~~C~~C~~~g~-lv~Cd--~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           7 HHMEFCRVCKDGGE-LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCCSS-CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCcCCCcCCCCCCe-EEEeC--CCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            47889999999999 99999  99999999999987777789999999997543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.7e-11  Score=82.62  Aligned_cols=49  Identities=16%  Similarity=0.411  Sum_probs=43.7

Q ss_pred             CCccceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           33 EEEPCIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      ....|..|+.+|+ ||.|+  +|+.+||..|+++++...+.|+|+||.|...
T Consensus         6 ~c~~C~~C~~~~~-ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCSSSC-CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCCcCE-EEECC--CCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            4668999999999 99999  9999999999998777778999999999643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.7e-10  Score=72.12  Aligned_cols=45  Identities=27%  Similarity=0.584  Sum_probs=37.5

Q ss_pred             cceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccch
Q 044718           36 PCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        36 ~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      .|.+|++.++  .||.|+  +|+..||.+|++.++.-.+.++||||.|.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd--~C~~~~H~~C~~p~~~~~p~~~W~C~~C~   48 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CCcCcCCCCCCCCEEEcC--CCCCCCCCCCCCCCCCcCCCCCEECcCCc
Confidence            3666665553  399999  99999999999987777789999999995

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.5e-09  Score=76.39  Aligned_cols=60  Identities=25%  Similarity=0.408  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCC--CCCccceecCCCCC----eEEeeCCCCccccccccccCCCCc----cCCCCCcccccch
Q 044718           21 GRSGDFMDVDL--LEEEPCIKCNRRDE----NLLVCSQSGCLISVHENCLSCGVE----FDDVGNFYRPYCW   82 (236)
Q Consensus        21 g~S~~~~~~e~--~~qD~CikC~kdGq----~LL~CSg~GCPlsvH~sCLgssp~----fDD~GnFYCPyC~   82 (236)
                      |+|++...++.  .....|.+|+....    .||.|+  +|...||..|+++++.    .++.++||||.|.
T Consensus         1 ~~s~s~~~~d~~~~~~~~C~iC~~~~~~~~~~~v~Cd--~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~   70 (88)
T d1weva_           1 GSSGSSGADDFAMEMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             CCCCCCCCCCCHHHHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             CCCCcCCCCcccCcCcCCccCCCCccCCCCCeEEEcC--CCCCccccccCCCcccccccccCCCeEECcccC
Confidence            44555433333  23456999986422    289999  9999999999996543    3578899999996

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=4.8e-08  Score=69.30  Aligned_cols=58  Identities=33%  Similarity=0.674  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCCCccceecCCC--CCeEEeeCCCCccc-cccccccCCCCccCCCCCcccccchh
Q 044718           21 GRSGDFMDVDLLEEEPCIKCNRR--DENLLVCSQSGCLI-SVHENCLSCGVEFDDVGNFYRPYCWY   83 (236)
Q Consensus        21 g~S~~~~~~e~~~qD~CikC~kd--Gq~LL~CSg~GCPl-svH~sCLgssp~fDD~GnFYCPyC~Y   83 (236)
                      |.|+++..+. .+...| .|...  ++ +|.|+...|+. .||..|++  ++..|.++||||.|.-
T Consensus         4 gss~~~~~d~-~e~~~C-iC~~~~~~~-~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~   64 (71)
T d1wesa_           4 GSSGEFAIDP-NEPTYC-LCNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG   64 (71)
T ss_dssp             CCSCCSCCCS-SSCCCS-TTCCCCCSS-EECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred             CcCCCCCcCC-CCCCEE-EeCCCCCCC-EEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCcc
Confidence            4444454433 345677 58863  45 77887778986 58999998  6778899999999964

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=1.4e-06  Score=59.96  Aligned_cols=45  Identities=27%  Similarity=0.543  Sum_probs=35.5

Q ss_pred             ceecCC---CCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           37 CIKCNR---RDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        37 CikC~k---dGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      | .|+.   ++..+|.|+  .|..-||..|++.+..-.+.++|+||.|.-+
T Consensus        19 C-~C~~~~~~~~~mv~Cd--~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~   66 (72)
T d1weea_          19 C-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             C-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             e-eCCCCcCCCCeEEEeC--CCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence            5 3554   333489999  9999999999998666667799999999754

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.05  E-value=8.6e-07  Score=58.83  Aligned_cols=44  Identities=23%  Similarity=0.660  Sum_probs=33.6

Q ss_pred             cceecCCCCC-eEEeeCCCCcccc-ccccccCCCCccCCCCCcccccch
Q 044718           36 PCIKCNRRDE-NLLVCSQSGCLIS-VHENCLSCGVEFDDVGNFYRPYCW   82 (236)
Q Consensus        36 ~CikC~kdGq-~LL~CSg~GCPls-vH~sCLgssp~fDD~GnFYCPyC~   82 (236)
                      .| .|++..+ .++.|+...|+.. ||.+|++  ++-.+.|+||||.|.
T Consensus         4 yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~   49 (51)
T d2pnxa1           4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   49 (51)
T ss_dssp             ET-TTTEECCSEEEECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-EcCCCCCCCEEEEecCCCCCCCEeCCccC--CCcCCCCcEECcCCC
Confidence            45 3654332 3899998889875 8999999  455778999999996

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=4e-06  Score=56.52  Aligned_cols=51  Identities=22%  Similarity=0.475  Sum_probs=38.7

Q ss_pred             CCccceecCCC---CCeEEeeCCCCccccccccccCCCCccC-CCCCcccccchhch
Q 044718           33 EEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVEFD-DVGNFYRPYCWYKC   85 (236)
Q Consensus        33 ~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~fD-D~GnFYCPyC~YKk   85 (236)
                      .+..|-.|+..   ++.+|.|+  +|...||..|++.+.... +...|+||.|.-++
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd--~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcC--CCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            45678888764   33367899  999999999999755543 45799999998543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=5.1e-06  Score=57.07  Aligned_cols=49  Identities=16%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             CCccceecCCCCC--eEEeeCCCCccccccccccCCCCcc-----CCCCCcccccchhc
Q 044718           33 EEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEF-----DDVGNFYRPYCWYK   84 (236)
Q Consensus        33 ~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~f-----DD~GnFYCPyC~YK   84 (236)
                      +...| .|++.+.  .+|.|+  .|...||..|++.+...     .+..+|+||.|...
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd--~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CcCEE-ECCCccCCCeEEEEC--CCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            34446 4665432  299999  99999999999864321     24578999999643

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=0.00011  Score=51.29  Aligned_cols=55  Identities=18%  Similarity=0.427  Sum_probs=37.9

Q ss_pred             CCCCCCccceecCCC---CCeEEeeCCCCccccccccccCCCCc-c----CCCCCcccccchhch
Q 044718           29 VDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVE-F----DDVGNFYRPYCWYKC   85 (236)
Q Consensus        29 ~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~-f----DD~GnFYCPyC~YKk   85 (236)
                      ++..+...| .|+..   |. ++.|....|..-||.+|++.+.. .    ...-.|+||.|.-++
T Consensus        11 ~~~~~~~~C-~C~~~~~~~~-~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          11 FQPEIKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             SSCCCCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             cCCCCccEe-ECCCccCCCc-EEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            344455678 58874   44 77787668999999999986422 1    122369999998654

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=8.6e-05  Score=52.07  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCccceecCCC---CCeEEeeCCCCccccccccccCCCCc-cCCCCCcccccchh
Q 044718           22 RSGDFMDVDLLEEEPCIKCNRR---DENLLVCSQSGCLISVHENCLSCGVE-FDDVGNFYRPYCWY   83 (236)
Q Consensus        22 ~S~~~~~~e~~~qD~CikC~kd---Gq~LL~CSg~GCPlsvH~sCLgssp~-fDD~GnFYCPyC~Y   83 (236)
                      .|++..+..  .-..| .|++.   +...+.|+  .|..-||..|++.+.. ..+.+.|+||.|.-
T Consensus         2 ~~gss~~~~--~pv~C-iC~~~~~~~~~mI~Cd--~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~   62 (79)
T d1wepa_           2 SSGSSGMAL--VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEA   62 (79)
T ss_dssp             CSCCCCCCC--CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred             CCCcCCCCc--CCeEe-ECCCccCCCCcEEECC--CCCCcEeccccCcchhcCCCCCEEECccCcC
Confidence            344444443  23455 68864   22267899  9999999999997533 23557899999964

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=92.12  E-value=0.0043  Score=40.53  Aligned_cols=51  Identities=25%  Similarity=0.344  Sum_probs=36.6

Q ss_pred             CCCccceecCCCCC--eEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           32 LEEEPCIKCNRRDE--NLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        32 ~~qD~CikC~kdGq--~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      .+...|..|-...+  .+..|.-.||.-.||..||..  -+.-.++.-||.|..+
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~--W~~~~~~~~CP~Cr~~   56 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLST--WLTISRNTACQICGVV   56 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH--HHHHHTCSBCTTTCCB
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHH--HHhhCCCCCCcccCCe
Confidence            36788999965433  245565558999999999993  2334577899999754

>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Zinc finger FYVE domain-containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.17  E-value=0.25  Score=33.68  Aligned_cols=27  Identities=37%  Similarity=1.017  Sum_probs=21.0

Q ss_pred             ceecCCCCCeEEeeCCCCccccccccccCCCCccCCCCCcccccchhc
Q 044718           37 CIKCNRRDENLLVCSQSGCLISVHENCLSCGVEFDDVGNFYRPYCWYK   84 (236)
Q Consensus        37 CikC~kdGq~LL~CSg~GCPlsvH~sCLgssp~fDD~GnFYCPyC~YK   84 (236)
                      |+.|+.+..  |.|-  ||                 .|+.||+.||..
T Consensus         4 C~ICneDA~--lrC~--gC-----------------dgdLyC~rC~rE   30 (54)
T d2d8va1           4 CCICNEDAT--LRCA--GC-----------------DGDLYCARCFRE   30 (54)
T ss_dssp             CTTTCSCCC--EEET--TT-----------------TSEEECSSHHHH
T ss_pred             eEEecCCCc--eEec--CC-----------------CCceehHHHHHH
Confidence            888999888  5777  44                 578899999853