Citrus Sinensis ID: 044724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780--
Protein Sequence
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCHSN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEccccccccccccEEEccccEEEEEcccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHHccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccEEEEEEccccccccccccccccHHHcccccccEEEcccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHHcccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcHcccEEEcccccccccccHHccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEcccccccccccccccccHHHHHHHHHHccccccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MVIMFVLLLIIFeggwsegcldHERFALLQLKhffndpvnylhdwvdakgatdccqwANVECNNTTGRVIQLYLSNTRSMELEEWYLNAylftpfqqleslSLSANNIagcvenegassrevtrlnnlkmfdlsgnsfnnSILSSLTRLSSVRSLKLSYNRlegsidvkefdsfnnlevldmkrneidnlvvpqgfphfkslehlDMSYAHIALNTNFLQIIGesmpslkhlslsnfspsndswtlNQVLWLSnnhfripispdplfnhsrlKIFHAYNNEIHAEiteshsltaptfqlkslslssgygdgpfrlpihshkslrlldvsnnnfqgcipveigdilpslscfnismnaldgsipssfeghmfsknfnlTNVRWLLLEEnhfvgeipqsLSKCFLLkglylnnnnlsgkipqwlgnltglqhiimpknhlegpipvefcqldwlqildisdnnisgslpscFHLLSIEQINGLSGLSHLILAHnnlegevpvqlcglnqlqlldlsdnnlhglippffyntalhesynnnssldkpfeisfdfrNTEKKVEKKSHEIFEfttksnaytyQGRVLSLLSGIDLscnklighipppignltRIQILNLshnnltgtipstfSKLEAYRNLDLSYnklngkiprqLVELNAFVVFSFACnnlsgkipeLTAQFATfnessykgnpflcglplpicrspatmpeastnnegddnlidtgnFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVvdnlipkrfchsn
Flexible Loop (DISEMBL)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNrlegsidvkefdsfnNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEifefttksnaytyQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCHSN
Low Complexity Region (SEG)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNsilssltrlssvrslklsYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFllkglylnnnnlSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVqlcglnqlqlldlsdnnlHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTisyiilifgiiiVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCHSN
Disordered region (IsUnstruct)
*VIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVEN*******VTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN*****KPFEISFDFR**********HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICR****************NLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFC***
Disordered Region (DISOPRED)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY********PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG****************************GNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCH**
Disordered Region (DISEMBL)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCHSN
Disordered Region (DISPRO)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNLIPKRFCHSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	782	2.2.26 [Sep-21-2011]
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.704	0.482	0.296	4e-54
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.913	0.591	0.295	7e-53
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.913	0.591	0.293	7e-52
Q9C9H7	847	Receptor-like protein 12	no	no	0.838	0.774	0.278	1e-47
Q9LJF3	1164	Receptor-like protein kin	no	no	0.884	0.594	0.280	6e-47
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.794	0.546	0.295	2e-46
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.833	0.522	0.279	2e-45
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.896	0.601	0.269	8e-45
Q9FL28	1173	LRR receptor-like serine/	no	no	0.708	0.472	0.294	9e-45
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.846	0.633	0.268	1e-44

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 193/650 (29%), Positives = 285/650 (43%), Gaps = 99/650 (15%)

Query: 91  LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLS 150
           LF   ++L++L LS NNI G +      +  ++   ++   D SGNS +  I  SL   +
Sbjct: 172 LFLSSKKLQTLDLSYNNITGPIS---GLTIPLSSCVSMTYLDFSGNSISGYISDSLINCT 228

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA 210
           +++SL LSYN  +G I  K F     L+ LD+  N +   + P+     +SL++L +SY 
Sbjct: 229 NLKSLNLSYNNFDGQIP-KSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSY- 286

Query: 211 HIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
                 NF  +I ES+ S              SW   Q L LSNN+   P     L +  
Sbjct: 287 -----NNFTGVIPESLSSC-------------SWL--QSLDLSNNNISGPFPNTILRSFG 326

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSN 330
            L+I    NN I                            G F   I + KSLR+ D S+
Sbjct: 327 SLQILLLSNNLI---------------------------SGDFPTSISACKSLRIADFSS 359

Query: 331 NNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHF 390
           N F G IP ++     SL    +  N + G IP +            + +R + L  N+ 
Sbjct: 360 NRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAIS--------QCSELRTIDLSLNYL 411

Query: 391 VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLD 450
            G IP  +     L+      NN++G+IP  +G L  L+ +I+  N L G IP EF    
Sbjct: 412 NGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCS 471

Query: 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL 510
            ++ +  + N ++G +P  F +LS         L+ L L +NN  GE+P +L     L  
Sbjct: 472 NIEWVSFTSNRLTGEVPKDFGILS--------RLAVLQLGNNNFTGEIPPELGKCTTLVW 523

Query: 511 LDLSDNNLHGLIPPFFY--------------NTALHESYNNNSSLDKPFEISFDFRNTEK 556
           LDL+ N+L G IPP                 NT        NS       + F     E+
Sbjct: 524 LDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPER 583

Query: 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG------IDLSCNKLIGHIPPPIGNLTRIQ 610
            ++  S +  +FT       Y G +LSL +       +DLS N+L G IP  IG +  +Q
Sbjct: 584 LLQIPSLKSCDFT-----RMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQ 638

Query: 611 ILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGK 670
           +L LSHN L+G IP T  +L+     D S N+L G+IP     L+  V    + N L+G 
Sbjct: 639 VLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGP 698

Query: 671 IPELTAQFATFNESSYKGNPFLCGLPLPICRS-----PATMPEASTNNEG 715
           IP+   Q +T   + Y  NP LCG+PLP C++     PA   E      G
Sbjct: 699 IPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHG 747

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  209 bits (532), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 241/815 (29%), Positives = 354/815 (43%), Gaps = 101/815 (12%)

Query: 28  LLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYL 87
           LL  K         L +W+ +   TD C +  V C N+  RV  + LSNT  + ++   +
Sbjct: 47  LLSFKAALPPTPTLLQNWLSS---TDPCSFTGVSCKNS--RVSSIDLSNTF-LSVDFSLV 100

Query: 88  NAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI--LSS 145
            +YL  P   LESL L   N++G + +   S   VT    L   DL+ N+ +  I  +SS
Sbjct: 101 TSYLL-PLSNLESLVLKNANLSGSLTSAAKSQCGVT----LDSIDLAENTISGPISDISS 155

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
               S+++SL LS N L+         +  +L+VLD+  N I    +   FP   S+  +
Sbjct: 156 FGVCSNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNL---FPWVSSMGFV 212

Query: 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLS--NFS---PSNDSWTLNQVLWLSNNHFRIP 260
           ++ +  I  N     I      +L +L LS  NFS   PS    +  Q L LS+N F   
Sbjct: 213 ELEFFSIKGNKLAGSIPELDFKNLSYLDLSANNFSTVFPSFKDCSNLQHLDLSSNKFYGD 272

Query: 261 ISPDPLFNHSRLKIFHAYNNE-------IHAEITESHSLTAPTFQ-------------LK 300
           I    L +  +L   +  NN+       + +E  +   L    FQ             + 
Sbjct: 273 IGSS-LSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVV 331

Query: 301 SLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG 360
            L LS     G     +    SL L+D+SNNNF G +PV+    L ++    +S N   G
Sbjct: 332 ELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVG 391

Query: 361 SIPSSFEG-------HMFSKNFN-----------LTNVRWLLLEENHFVGEIPQSLSKCF 402
            +P SF          M S N             + N++ L L+ N F G IP SLS C 
Sbjct: 392 GLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
            L  L L+ N L+G IP  LG+L+ L+ +I+  N L G IP E   L  L+ L +  N++
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 463 SGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEVPVQLCGLN 506
           +G +P+    C  L    LS  Q++G        LS L+ L L +N++ G +P +L    
Sbjct: 512 TGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 507 QLQLLDLSDNNLHGLIPPFFYN----------TALHESYNNNSSLDKPFE----ISFDFR 552
            L  LDL+ N L+G IPP  +           T     Y  N    +       + F   
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI 631

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYT-----YQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607
             E+     +     FT      T     + G ++ L    DLS NKL G IP  +G + 
Sbjct: 632 RQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFL----DLSYNKLEGSIPKELGAMY 687

Query: 608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667
            + ILNL HN+L+G IP     L+    LDLSYN+ NG IP  L  L        + NNL
Sbjct: 688 YLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNL 747

Query: 668 SGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFI 727
           SG IPE +A F TF +  +  N  LCG PLP+  S     +A+ + +             
Sbjct: 748 SGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQHQKSHRRQASLAGSVA 805

Query: 728 TFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWI 762
              +  +  IFG+IIV       RR+    +E ++
Sbjct: 806 MGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  206 bits (523), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 239/815 (29%), Positives = 352/815 (43%), Gaps = 101/815 (12%)

Query: 28  LLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYL 87
           LL  K         L +W+ + G    C +  V C N+  RV  + LSNT  + ++   +
Sbjct: 47  LLSFKAALPPTPTLLQNWLSSTGP---CSFTGVSCKNS--RVSSIDLSNTF-LSVDFSLV 100

Query: 88  NAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI--LSS 145
            +YL  P   LESL L   N++G + +   S   VT    L   DL+ N+ +  I  +SS
Sbjct: 101 TSYLL-PLSNLESLVLKNANLSGSLTSAAKSQCGVT----LDSIDLAENTISGPISDISS 155

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
               S+++SL LS N L+         +  +L+VLD+  N I    +   FP   S+  +
Sbjct: 156 FGVCSNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNL---FPWVSSMGFV 212

Query: 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLS--NFS---PSNDSWTLNQVLWLSNNHFRIP 260
           ++ +  +  N     I      +L +L LS  NFS   PS    +  Q L LS+N F   
Sbjct: 213 ELEFFSLKGNKLAGSIPELDFKNLSYLDLSANNFSTVFPSFKDCSNLQHLDLSSNKFYGD 272

Query: 261 ISPDPLFNHSRLKIFHAYNNE-------IHAEITESHSLTAPTFQ-------------LK 300
           I    L +  +L   +  NN+       + +E  +   L    FQ             + 
Sbjct: 273 IGSS-LSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVV 331

Query: 301 SLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG 360
            L LS     G     +    SL L+D+S NNF G +PV+    L ++    +S N   G
Sbjct: 332 ELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVG 391

Query: 361 SIPSSFEG-------HMFSKNFN-----------LTNVRWLLLEENHFVGEIPQSLSKCF 402
            +P SF          M S N             + N++ L L+ N F G IP SLS C 
Sbjct: 392 GLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
            L  L L+ N L+G IP  LG+L+ L+ +I+  N L G IP E   L  L+ L +  N++
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 463 SGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEVPVQLCGLN 506
           +G +P+    C  L    LS  Q++G        LS L+ L L +N++ G +P +L    
Sbjct: 512 TGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 507 QLQLLDLSDNNLHGLIPPFFYN----------TALHESYNNNSSLDKPFE----ISFDFR 552
            L  LDL+ N L+G IPP  +           T     Y  N    +       + F   
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGI 631

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYT-----YQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607
             E+     +     FT      T     + G ++ L    DLS NKL G IP  +G + 
Sbjct: 632 RQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFL----DLSYNKLEGSIPKELGAMY 687

Query: 608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667
            + ILNL HN+L+G IP     L+    LDLSYN+ NG IP  L  L        + NNL
Sbjct: 688 YLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNL 747

Query: 668 SGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFI 727
           SG IPE +A F TF +  +  N  LCG PLPI  S     +A+ + +             
Sbjct: 748 SGMIPE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRRQASLAGSVA 805

Query: 728 TFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWI 762
              +  +  IFG+IIV       RR+    +E ++
Sbjct: 806 MGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 229/823 (27%), Positives = 341/823 (41%), Gaps = 167/823 (20%)

Query: 1   MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVN----YLHDWVDA-KGATDCC 55
           ++I   LL+          C D +R ALL+ +  F  P+N     ++ W      +TDCC
Sbjct: 15  IIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEF--PINASWHIMNQWRGPWNKSTDCC 72

Query: 56  QWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFT-----PFQQLESLSLSANNIAG 110
            W  V CN+ +G+VI L + NT        +LN YL T       Q L  L L+  N+ G
Sbjct: 73  LWNGVTCNDKSGQVISLDIPNT--------FLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query: 111 CVENE------------------GASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSV 152
            + +                   G     +  LN L+   L+ N     I SSL  LS +
Sbjct: 125 EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRL 184

Query: 153 RSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV--VPQGFPHFKSLEHLDMSYA 210
            +L+L  NRL G I     DS  +L+ L       +NL+  +P    +  +L HL +++ 
Sbjct: 185 VNLELFSNRLVGKIP----DSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHN 240

Query: 211 HIALNTNFLQIIGESMPSLKHL-SLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
                    Q++GE   S+ +L  L   S  N+S + N           IPIS     N 
Sbjct: 241 ---------QLVGEVPASIGNLIELRVMSFENNSLSGN-----------IPIS---FANL 277

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQ-LKSLSLSSGYGDGPFRLPIHSHKSLRLLDV 328
           ++L IF   +N      T +       F  L+   +S     GPF   +    SL  + +
Sbjct: 278 TKLSIFVLSSNNF----TSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYL 333

Query: 329 SNNNFQGCIPVEIGDILPS--LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE 386
             N F G  P+E  +   S  L    +  N L G IP S           L N+  L + 
Sbjct: 334 QENQFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESIS--------RLLNLEELDIS 383

Query: 387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ--WLGNLTGLQH-------------- 430
            N+F G IP ++SK   L  L L+ NNL G++P   W  N   L H              
Sbjct: 384 HNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEA 443

Query: 431 ----IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS--IEQIN----G 480
               + +  N  +GPIP   C+L  L  LD+S+N  SGS+PSC    S  I+++N     
Sbjct: 444 LIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNN 503

Query: 481 LSG-----------LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF---- 525
            SG           L  L ++HN LEG+ P  L     L+L+++  N +  + P +    
Sbjct: 504 FSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESL 563

Query: 526 ------------FYNTALHE--------------SYNNNSSLDKPFEISFDFRNTEKKVE 559
                       FY    H               S+NN S    P+  S ++++     E
Sbjct: 564 PSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFS-NWKDMTTLTE 622

Query: 560 KKSHEIFEFTTKSNAYTYQ------------GRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607
           +    + EF   +++Y ++             R+      ID S NK+ G+IP  +G L 
Sbjct: 623 EMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLK 682

Query: 608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667
            +++LNLS N  T  IP   + L     LD+S NKL+G+IP+ L  L+     +F+ N L
Sbjct: 683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLL 742

Query: 668 SGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEAS 710
            G +P  T QF     SS+  NP L GL   ICR    +   S
Sbjct: 743 QGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTS 783

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  189 bits (481), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 223/796 (28%), Positives = 335/796 (42%), Gaps = 104/796 (13%)

Query: 36  NDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPF 95
           +DP N+L +W    G  D C W  V C ++ GRVI L L N          LN    T  
Sbjct: 47  SDPTNFLGNWRYGSG-RDPCTWRGVSC-SSDGRVIGLDLRNGGLT----GTLNLNNLTAL 100

Query: 96  QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS-----ILSSLTRLS 150
             L SL L  NN +       +     +   +L++ DLS NS  +S     + S+   L 
Sbjct: 101 SNLRSLYLQGNNFS-------SGDSSSSSGCSLEVLDLSSNSLTDSSIVDYVFSTCLNLV 153

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHF-KSLEHLDMSY 209
           SV     S+N+L G +      S   +  +D+  N   + +       F  SL+HLD+S 
Sbjct: 154 SV---NFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNSLKHLDLSG 210

Query: 210 AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN-------QVLWLSNNHFRIPIS 262
            ++    +F ++      +L   SLS  S S D + ++       + L LS N     I 
Sbjct: 211 NNVT--GDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIGKIP 268

Query: 263 PDPLF-NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK 321
            D  + N   L+     +N    EI    SL   T ++  LS +S  G  P      S  
Sbjct: 269 GDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLP--QSFTSCG 326

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           SL+ L++ NN   G     +   L  ++   +  N + GS+P S          N +N+R
Sbjct: 327 SLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLT--------NCSNLR 378

Query: 382 WLLLEENHFVGEIPQ---SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHL 438
            L L  N F GE+P    SL    +L+ L + NN LSG +P  LG    L+ I +  N L
Sbjct: 379 VLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNAL 438

Query: 439 EGPIPVEFCQLDWLQILDISDNNISGSLPSCF--------------HLLS---IEQINGL 481
            G IP E   L  L  L +  NN++G +P                 +LL+    E I+  
Sbjct: 439 TGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPESISKC 498

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTA----------- 530
           + +  + L+ N L GE+PV +  L +L +L L +N+L G IP    N             
Sbjct: 499 TNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNN 558

Query: 531 ----LHESYNNNSSLDKPFEIS---FDFRNTEKKVE-KKSHEIFEFT------------- 569
               L     + + L  P  +S   F F   E   + + +  + EF              
Sbjct: 559 LTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMV 618

Query: 570 -TKSNAYTYQGRVLSLLSG------IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT 622
            +      Y G  + + S       +DLS N + G IP   G +  +Q+LNL HN LTGT
Sbjct: 619 HSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGT 678

Query: 623 IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFN 682
           IP +F  L+A   LDLS+N L G +P  L  L+       + NNL+G IP    Q  TF 
Sbjct: 679 IPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFP 737

Query: 683 ESSYKGNPFLCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFT-ISYIILIFGII 741
            + Y  N  LCG+PLP C S  + P  S  +    ++    +  I F+ +  ++LI  + 
Sbjct: 738 LTRYANNSGLCGVPLPPCSS-GSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVMLIMALY 796

Query: 742 IVLYVNPYWRRRWFYL 757
               V    ++R  Y+
Sbjct: 797 RARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 223/754 (29%), Positives = 325/754 (43%), Gaps = 133/754 (17%)

Query: 27  ALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNN---TTGRVIQLYLSNT------ 77
           AL   K   +DP+  L  W D       C W  V C N   T  R+ +L LS        
Sbjct: 31  ALTAFKLNLHDPLGALTSW-DPSTPAAPCDWRGVGCTNHRVTEIRLPRLQLSGRISDRIS 89

Query: 78  -----RSMELEEWYLN-------AY---LFTPFQQLESLS------------LSANNIAG 110
                R + L     N       AY   L + F Q  SLS            L   N+AG
Sbjct: 90  GLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAG 149

Query: 111 CVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE 170
              N  +    V   ++L+  D+S N+F+  I S L  L+ ++ L LSYN+L G I    
Sbjct: 150 ---NRLSGEIPVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPAS- 205

Query: 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLK 230
             +  +L+ L +  N +    +P    +  SL HL  S   I        +I  +  +L 
Sbjct: 206 LGNLQSLQYLWLDFNLLQG-TLPSAISNCSSLVHLSASENEIG------GVIPAAYGALP 258

Query: 231 HLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKI----FHAYNNEIHAEI 286
            L               +VL LSNN+F   + P  LF ++ L I    F+A+++ +  E 
Sbjct: 259 KL---------------EVLSLSNNNFSGTV-PFSLFCNTSLTIVQLGFNAFSDIVRPET 302

Query: 287 TESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILP 346
           T +         L+ L L      G F L + +  SL+ LDVS N F G IP +IG+ L 
Sbjct: 303 TANCRTG-----LQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGN-LK 356

Query: 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG 406
            L    ++ N+L G IP   +           ++  L  E N   G+IP+ L     LK 
Sbjct: 357 RLEELKLANNSLTGEIPVEIK--------QCGSLDVLDFEGNSLKGQIPEFLGYMKALKV 408

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
           L L  N+ SG +P  + NL  L+ + + +N+L G  PVE   L  L  LD+S N  SG++
Sbjct: 409 LSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAV 468

Query: 467 PSCFHLLSIEQI-----NGLSG-----------LSHLILAHNNLEGEVPVQLCGLNQLQL 510
           P     LS         NG SG           L+ L L+  N+ GEVPV+L GL  +Q+
Sbjct: 469 PVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQV 528

Query: 511 LDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEI--SFDFRNTEKKVEKKSHEIFEF 568
           + L  NN  G++P  F ++ +   Y N SS     EI  +F F      +    + I   
Sbjct: 529 IALQGNNFSGVVPEGF-SSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHI--- 584

Query: 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS------------- 615
              S +   +    S L  ++L  N+L+GHIP  +  L R+++L+L              
Sbjct: 585 ---SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEIS 641

Query: 616 -----------HNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNA-FVVFSFA 663
                      HN+L+G IP +FS L     +DLS N L G+IP  L  +++  V F+ +
Sbjct: 642 QSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVS 701

Query: 664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697
            NNL G+IP         N S + GN  LCG PL
Sbjct: 702 SNNLKGEIPASLGSRIN-NTSEFSGNTELCGKPL 734

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 220/786 (27%), Positives = 335/786 (42%), Gaps = 134/786 (17%)

Query: 12  FEGGWSEGCLDHERFALLQLKHFF------NDPVNYLHDWVDAKGATDCCQWANVECNNT 65
           F G    G ++++   LL++K         +DP   L  W       + C W  V C+NT
Sbjct: 14  FSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDN--INYCSWTGVTCDNT 68

Query: 66  T-GRVIQLYLSNTR-SMELEEWYLNAYLFTPFQQLESLSLSANNIAGCV----------- 112
              RVI L L+    +  +  W      F  F  L  L LS+NN+ G +           
Sbjct: 69  GLFRVIALNLTGLGLTGSISPW------FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLE 122

Query: 113 -----------------------------ENE--GASSREVTRLNNLKMFDLSGNSFNNS 141
                                        +NE  G     +  L NL+M  L+       
Sbjct: 123 SLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGP 182

Query: 142 ILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKS 201
           I S L RL  V+SL L  N LEG I   E  + ++L V     N + N  +P      ++
Sbjct: 183 IPSQLGRLVRVQSLILQDNYLEGPIPA-ELGNCSDLTVFTAAENML-NGTIPAELGRLEN 240

Query: 202 LEHLDMSYAHIALNTNFLQIIGESMPSLKHLSL-----SNFSPSNDSWTLN-QVLWLSNN 255
           LE L++  A+ +L       +GE M  L++LSL         P + +   N Q L LS N
Sbjct: 241 LEILNL--ANNSLTGEIPSQLGE-MSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSAN 297

Query: 256 HFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRL 315
           +    I P+  +N S+L      NN +   + +S  + +    L+ L LS     G   +
Sbjct: 298 NLTGEI-PEEFWNMSQLLDLVLANNHLSGSLPKS--ICSNNTNLEQLVLSGTQLSGEIPV 354

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
            +   +SL+ LD+SNN+  G IP  + +++  L+   +  N L+G++  S          
Sbjct: 355 ELSKCQSLKQLDLSNNSLAGSIPEALFELV-ELTDLYLHNNTLEGTLSPSIS-------- 405

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           NLTN++WL+L  N+  G++P+ +S    L+ L+L  N  SG+IPQ +GN T L+ I M  
Sbjct: 406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFG 465

Query: 436 NHLEGPIPVEFCQLD------------------------WLQILDISDNNISGSLPSCFH 471
           NH EG IP    +L                          L ILD++DN +SGS+PS F 
Sbjct: 466 NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525

Query: 472 LLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTA- 530
                    L GL  L+L +N+L+G +P  L  L  L  ++LS N L+G I P   +++ 
Sbjct: 526 F--------LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSY 577

Query: 531 LHESYNNNSSLDK-PFEISFDFRNTEKKVEK------------KSHEIFEFTTKSNAYT- 576
           L     NN   D+ P E+         ++ K            K  E+      SNA T 
Sbjct: 578 LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTG 637

Query: 577 ---YQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAY 633
               Q  +   L+ IDL+ N L G IPP +G L+++  L LS N    ++P+        
Sbjct: 638 TIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL 697

Query: 634 RNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
             L L  N LNG IP+++  L A  V +   N  SG +P+   + +   E     N    
Sbjct: 698 LVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTG 757

Query: 694 GLPLPI 699
            +P+ I
Sbjct: 758 EIPVEI 763

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  182 bits (462), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 212/787 (26%), Positives = 335/787 (42%), Gaps = 86/787 (10%)

Query: 36  NDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSN------------TRSMELE 83
           +DP N L +W    G    C W  V C++  GR++ L L N            T    L+
Sbjct: 48  SDPNNVLGNWKYESG-RGSCSWRGVSCSDD-GRIVGLDLRNSGLTGTLNLVNLTALPNLQ 105

Query: 84  EWYLNAYLFTPFQQ-------LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN 136
             YL    F+           L+ L LS+N+I+    +        ++ +NL   ++S N
Sbjct: 106 NLYLQGNYFSSGGDSSGSDCYLQVLDLSSNSIS----DYSMVDYVFSKCSNLVSVNISNN 161

Query: 137 SFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF-NNLEVLDMKRNEIDNLVVPQG 195
                +  + + L S+ ++ LSYN L   I       F  +L+ LD+  N +        
Sbjct: 162 KLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLS 221

Query: 196 FPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS--------PSNDSWTLN 247
           F    +L    +S  +++ +   +     ++P+ K L   N S        P+ + W   
Sbjct: 222 FGICGNLTFFSLSQNNLSGDKFPI-----TLPNCKFLETLNISRNNLAGKIPNGEYWGSF 276

Query: 248 Q---VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
           Q    L L++N     I P+       L I     N    E+      TA  + L++L+L
Sbjct: 277 QNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPS--QFTACVW-LQNLNL 333

Query: 305 SSGYGDGPFRLPIHSH-KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP 363
            + Y  G F   + S    +  L V+ NN  G +P+ + +   +L   ++S N   G++P
Sbjct: 334 GNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNC-SNLRVLDLSSNGFTGNVP 392

Query: 364 SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLG 423
           S F     S       +  +L+  N+  G +P  L KC  LK + L+ N L+G IP+ + 
Sbjct: 393 SGFCSLQSSP-----VLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIW 447

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPS----CFHLLSI--- 475
            L  L  ++M  N+L G IP   C +   L+ L +++N ++GS+P     C +++ I   
Sbjct: 448 MLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLS 507

Query: 476 ---------EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFF 526
                      I  LS L+ L L +N+L G VP QL     L  LDL+ NNL G +P   
Sbjct: 508 SNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGEL 567

Query: 527 YNTALHESYNNNSSLDKPF---EISFDFRNTEKKVE------KKSHEIFEFTTKSNAYTY 577
            + A      + S     F   E   D R     VE      ++   +    +      Y
Sbjct: 568 ASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIY 627

Query: 578 QGRVLSLLSG------IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
            G  +   S        D+S N + G IPP  GN+  +Q+LNL HN +TGTIP +F  L+
Sbjct: 628 SGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLK 687

Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691
           A   LDLS+N L G +P  L  L+       + NNL+G IP    Q  TF  S Y  N  
Sbjct: 688 AIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSG 746

Query: 692 LCGLPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFT-ISYIILIFGIIIVLYVNPYW 750
           LCG+PL  C S    P  S  +     +       I F+ + +++L+  +  V  V    
Sbjct: 747 LCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKE 806

Query: 751 RRRWFYL 757
           ++R  Y+
Sbjct: 807 QKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  182 bits (462), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 189/642 (29%), Positives = 278/642 (43%), Gaps = 88/642 (13%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
           L  L LS N + G +       R+   L NL+   L+ N     I + +   SS+  L+L
Sbjct: 218 LTDLDLSGNQLTGKI------PRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLEL 271

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
             N+L G I   E  +   L+ L + +N++ +  +P        L HL +S  H+     
Sbjct: 272 YDNQLTGKIPA-ELGNLVQLQALRIYKNKLTS-SIPSSLFRLTQLTHLGLSENHL----- 324

Query: 218 FLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA 277
            +  I E +  L+ L               +VL L +N+F     P  + N   L +   
Sbjct: 325 -VGPISEEIGFLESL---------------EVLTLHSNNFTGEF-PQSITNLRNLTVLTV 367

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCI 337
             N I  E+     L      L++LS       GP    I +   L+LLD+S+N   G I
Sbjct: 368 GFNNISGELPADLGLLT---NLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI 424

Query: 338 PVEIGDILPSLSCFNISMNALDGSIP------SSFEGHMFSKNFNLT-----------NV 380
           P   G +  +L+  +I  N   G IP      S+ E    + N NLT            +
Sbjct: 425 PRGFGRM--NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN-NLTGTLKPLIGKLQKL 481

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEG 440
           R L +  N   G IP+ +     L  LYL++N  +G+IP+ + NLT LQ + M  N LEG
Sbjct: 482 RILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEG 541

Query: 441 PIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV 500
           PIP E   +  L +LD+S+N  SG +P+ F        + L  L++L L  N   G +P 
Sbjct: 542 PIPEEMFDMKLLSVLDLSNNKFSGQIPALF--------SKLESLTYLSLQGNKFNGSIPA 593

Query: 501 QLCGLNQLQLLDLSDNNLHGLIP----PFFYNTALHESYNNNSSLDKPFEISFDFRNTEK 556
            L  L+ L   D+SDN L G IP        N  L+ +++NN               T  
Sbjct: 594 SLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNL-----------LTGTIP 642

Query: 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG------IDLSCNKLIGHIPPPI-GNLTRI 609
           K   K   + E    +N ++  G +   L        +D S N L GHIP  +   +  I
Sbjct: 643 KELGKLEMVQEIDLSNNLFS--GSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMI 700

Query: 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSG 669
             LNLS N+ +G IP +F  +    +LDLS N L G+IP  L  L+       A NNL G
Sbjct: 701 ISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKG 760

Query: 670 KIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATMPEAST 711
            +PE +  F   N S   GN  LCG   P+   P T+ + S+
Sbjct: 761 HVPE-SGVFKNINASDLMGNTDLCGSKKPL--KPCTIKQKSS 799

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 209/778 (26%), Positives = 333/778 (42%), Gaps = 116/778 (14%)

Query: 4   MFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVN--YLHDWVDAKGATDCCQWANVE 61
           + +++ I+    ++      E  ALL+ K  F +  +   L  WV+   ++ C  W  V 
Sbjct: 30  VLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVA 89

Query: 62  CNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSRE 121
           C  + G +I+L L+NT      E     + F+    L  + LS N  +G +      S  
Sbjct: 90  C--SLGSIIRLNLTNTGI----EGTFEDFPFSSLPNLTFVDLSMNRFSGTI------SPL 137

Query: 122 VTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSI--DVKEFDSFNNLEV 179
             R + L+ FDLS N     I   L  LS++ +L L  N+L GSI  ++        + +
Sbjct: 138 WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

Query: 180 LDMKRNEIDNLV---VPQGFPHFKSLEHLDMSYAHI-ALNTNFLQIIGESMPSLKHLSLS 235
            D       NL+   +P  F +   L +L   Y  I +L+ +    IG ++P+L+ L L 
Sbjct: 198 YD-------NLLTGPIPSSFGNLTKLVNL---YLFINSLSGSIPSEIG-NLPNLRELCLD 246

Query: 236 NFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEIT-ESHSLTA 294
                            +N   +IP S   L N + L +F    N++  EI  E  ++TA
Sbjct: 247 R----------------NNLTGKIPSSFGNLKNVTLLNMFE---NQLSGEIPPEIGNMTA 287

Query: 295 PTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS 354
               L +LSL +    GP    + + K+L +L +  N   G IP E+G+ + S+    IS
Sbjct: 288 ----LDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGE-MESMIDLEIS 342

Query: 355 MNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL 414
            N L G +P SF          LT + WL L +N   G IP  ++    L  L L+ NN 
Sbjct: 343 ENKLTGPVPDSFG--------KLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNF 394

Query: 415 SGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS 474
           +G +P  +     L+++ +  NH EGP+P        L  +    N+ SG +   F +  
Sbjct: 395 TGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYP 454

Query: 475 IEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHES 534
                    L+ + L++NN  G++        +L    LS+N++ G IPP  +N      
Sbjct: 455 T--------LNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQ 506

Query: 535 YNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK 594
            + +S+      I+ +   +   + + S         S       R+L+ L  +DLS N+
Sbjct: 507 LDLSSN-----RITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNR 561

Query: 595 LIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654
               IPP + NL R+  +NLS N+L  TIP   +KL   + LDLSYN+L+G+I  Q   L
Sbjct: 562 FSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSL 621

Query: 655 NAFVVFSFACNNLSGKIP-------ELT----------------AQFATFNESSYKGNPF 691
                   + NNLSG+IP        LT                A F      +++GN  
Sbjct: 622 QNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKD 681

Query: 692 LCGLPLPICRSPATMP---EASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYV 746
           LCG    +  +    P    +S  +  D NLI          I  ++ I G II+L V
Sbjct: 682 LCG---SVNTTQGLKPCSITSSKKSHKDRNLI----------IYILVPIIGAIIILSV 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	782
255581263	912	serine-threonine protein kinase, plant-t	0.942	0.808	0.393	1e-146
224142717	876	predicted protein [Populus trichocarpa]	0.934	0.834	0.382	1e-136
224112245	876	predicted protein [Populus trichocarpa]	0.932	0.832	0.366	1e-130
224120284	929	predicted protein [Populus trichocarpa]	0.901	0.758	0.337	1e-120
224073436	1014	predicted protein [Populus trichocarpa]	0.971	0.749	0.332	1e-119
224134891	953	predicted protein [Populus trichocarpa]	0.964	0.791	0.335	1e-117
224142721	926	predicted protein [Populus trichocarpa]	0.867	0.732	0.370	1e-116
224123984	1016	predicted protein [Populus trichocarpa]	0.953	0.734	0.327	1e-113
224142481	781	predicted protein [Populus trichocarpa]	0.835	0.836	0.368	1e-112
224134597	947	predicted protein [Populus trichocarpa]	0.884	0.730	0.365	1e-111

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 369/938 (39%), Positives = 486/938 (51%), Gaps = 201/938 (21%)

Query: 1   MVIMFV---LLLIIFEGGWSEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQW 57
           MV+ +V   +LL++ E    +GCLD ER ALLQLK FF D    L  W+ A+   DCCQW
Sbjct: 1   MVLKWVWMGVLLVLSETCCCKGCLDKERAALLQLKPFF-DSTLALQKWLGAEDNLDCCQW 59

Query: 58  ANVECNNTTGRVIQLYLSNTRSMELEE-WYLNAYLFTPFQQLESLSLSANNIAGCVENEG 116
             VEC++ TGRV +L L  TR+ +    WYLNA LF PF++L+SLSL  N+I  CVENEG
Sbjct: 60  ERVECSSITGRVTRLDLDTTRAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDCVENEG 119

Query: 117 ASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNN 176
              R  TRL++L++ DLS NSFN SILSSL+  SS++SL L +N  E  I  ++  +F N
Sbjct: 120 FE-RLSTRLSSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFEN 178

Query: 177 LEVLDMKRNEIDNLVVP-------------------------QGFPHFKSLEHLDMSYAH 211
           LE L + + E++N  +                          QG      L  LD+S   
Sbjct: 179 LEELYLDKIELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVS--- 235

Query: 212 IALNTNFLQIIGESMPSLKHLSLSNFSP-------SNDSWTLNQVLW---LSNNHFRIPI 261
              +  F  I+   + +L  L L + S        SN    + + L    +SNNHF++P 
Sbjct: 236 ---SNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPF 292

Query: 262 SPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYG------------ 309
           S  P FNHS LK     NN I+ E  E HS  AP FQL S+ + SGYG            
Sbjct: 293 SLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGICGTFPNFLYHQ 348

Query: 310 --------------------------------------DGPFRLPIHSHKSLRLLDVSNN 331
                                                  G  +LP+H H +L  LD+SNN
Sbjct: 349 NNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNN 408

Query: 332 NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSF------------------------- 366
           +    IP+EIG  LP L   N+S N  DGSIPSSF                         
Sbjct: 409 HVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLA 468

Query: 367 ----------------EGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLN 410
                           +G MFSK FNLTN+ WL L++NHF G IP+SLSK   L  + L+
Sbjct: 469 TGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKS-ALSIMDLS 527

Query: 411 NNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 470
           +N+LSG IP W+GNL+ LQ++I+  N L+GPIPVEFCQL +L++LD+++N++SG LPSC 
Sbjct: 528 DNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCL 587

Query: 471 HLLSIEQ---------------------------------------INGLSGLSHLILAH 491
              SI                                         I G++ L  L L  
Sbjct: 588 SPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKS 647

Query: 492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDF 551
           N  +GE+P Q+CGL QL L+ L+DNNL G IP                 LD+   ++ D 
Sbjct: 648 NRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCL-------------QLDQSDSLAPDV 694

Query: 552 RNTEKKVEKKSHEI--FEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI 609
                 +      +    FTTK  +Y+YQG++LS +SGID SCNKL G IPP +GN + I
Sbjct: 695 PPVPNPLNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAI 754

Query: 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSG 669
             LNLS+N  TG IPSTFS L+   +LDLSYN LNG IP QL+EL     FS A NNL G
Sbjct: 755 YSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFG 814

Query: 670 KIPELTAQFATFNESSYKGNPFLCGLPLPIC---RSPATMPEASTNNEGDDNLIDTGNFF 726
           K P+ T QFATF  SSY+GNP LCGLPLP     R  ++ P AS  +E + N +D   F+
Sbjct: 815 KTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESNFLDMNTFY 873

Query: 727 ITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIAS 764
            +F +SY  +I G+ +VLY+NP WRR WF  V++ I+S
Sbjct: 874 GSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 345/903 (38%), Positives = 470/903 (52%), Gaps = 172/903 (19%)

Query: 1   MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDP-VNYLHDWVDAKGATDCCQWAN 59
           M ++  ++++  +G  + GCL  ER ALL LK   N P    L  W   KG T CC+W +
Sbjct: 7   MSMVLAIMMVSLQGWVALGCLKEERIALLHLKDSLNYPNGTSLPSW--RKGDTRCCEWES 64

Query: 60  VECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASS 119
           + C++ TGRV  LYL + R+ EL +WYLN  LF PFQQL SL LS N IAG VE +G   
Sbjct: 65  IVCSSRTGRVTGLYLWSVRNQELGDWYLNVSLFLPFQQLNSLILSDNRIAGWVEKKGGYG 124

Query: 120 REVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEV 179
             + +L+NLK+  L  NSFNNSILS +  L S+++L L YNRLEG ID+KE  S ++L+ 
Sbjct: 125 --LQKLSNLKILALEDNSFNNSILSFVEGLPSLKTLYLDYNRLEGLIDLKE--SLSSLKH 180

Query: 180 LDMKRNEIDNLVVPQG---------------------------FPHFKSL--EHLD---- 206
           L +  N I  LV  +G                           FP+  +L   H D    
Sbjct: 181 LGLGGNNISKLVASRGPSSLNTLYLGNITTYGNMSQLLQSLGAFPNLMTLFLHHNDFRGR 240

Query: 207 --------------MSYAHIALNTNFLQIIGESMPSLKHLSLSNFS---PSNDSWTLN-- 247
                         +     +L+ + LQ +G ++P LK+LS S  S   PS     LN  
Sbjct: 241 KLGDELQNLSSLKSLYLDQCSLDEHSLQNLG-ALPFLKNLSFSALSSTIPSGGLCDLNNL 299

Query: 248 ------------------------QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH 283
                                   Q L LS+NH +IP+S  PL+N S+LK F    NEI 
Sbjct: 300 QELHMYDNNLSGFLPPCLANLTSLQHLDLSSNHLKIPVSLSPLYNLSKLKYFDGSGNEIF 359

Query: 284 AEITESHSLTAPTFQLKSLSLSS-GYG--------------------------------- 309
            E  + H+L+ P FQ++SL L+S G G                                 
Sbjct: 360 TE-EDDHNLS-PKFQIESLYLNSRGQGARAFPKFLYHQVNLQYMDLTNIHIKGEFPNWLI 417

Query: 310 ----------------DGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
                            GPF LP +SH +L  L +S N+FQG IP EIG  LP L    +
Sbjct: 418 ENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISKNHFQGQIPSEIGAHLPRLEVLLM 477

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S +  +GSIP S          N+++++   L  N   G+IP  +     L+ L L+ NN
Sbjct: 478 SDDGFNGSIPFSLG--------NISSLQAFDLSNNSLQGQIPGWIGNMSSLEFLDLSGNN 529

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
            SG++P      + L+++ + +N L+GPI + F     +  LD+S NN++G++P      
Sbjct: 530 FSGRLPLRFDTSSNLRYLYLSRNKLQGPIAMIFYNSVEIFALDLSHNNLTGTIP------ 583

Query: 474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE 533
             E I  LS L  L+L++NNLEGE+P+QL  L+QL L+DLS N+L G I  +  +T    
Sbjct: 584 --EWIGRLSNLRFLLLSYNNLEGEIPIQLSKLDQLTLIDLSHNHLSGNILSWMIST---- 637

Query: 534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCN 593
                     PF   +            S +  EFTTK+ +  Y G ++   +GID SCN
Sbjct: 638 ---------HPFPRQY----YSNDYVSSSQQSLEFTTKNVSLYYIGSIIQYFTGIDFSCN 684

Query: 594 KLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVE 653
              G IP  IGNL +I+ LNLSHN+LTG IP TFS L+   +LDLSYNKL+G+IP +L E
Sbjct: 685 NFTGEIPFEIGNLIKIKALNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTE 744

Query: 654 LNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP-LPICRS--PATMPEAS 710
           L +  VFS A NNLSGK P   AQFATF+E  YK NPFLCG P L IC +  P +    S
Sbjct: 745 LFSLEVFSVAHNNLSGKTPTRVAQFATFDEKCYKDNPFLCGEPLLKICGAAMPPSPSPTS 804

Query: 711 TNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVV 770
           TNNE +   ID   F++TF + YI+++  I  VLY+NPYWRR WFY +E+ I +CYYF+V
Sbjct: 805 TNNEDNGGFIDMEVFYVTFWVEYIMVLIVIGAVLYINPYWRRAWFYFIEVSINNCYYFLV 864

Query: 771 DNL 773
           DNL
Sbjct: 865 DNL 867

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 328/895 (36%), Positives = 470/895 (52%), Gaps = 166/895 (18%)

Query: 1   MVIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDP-VNYLHDWVDAKGATDCCQWAN 59
           M ++  ++++  +G    GCL+ ER ALL LK  FN P    L  W+  K    CC W +
Sbjct: 7   MSMVLAIMMVSLQGWLPLGCLEEERIALLHLKDAFNYPNGTSLPSWI--KDDAHCCDWEH 64

Query: 60  VECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASS 119
           +EC+++TGRVI+L L +TR+ E+ +WY NA LF PFQQLE LSLS N IAG VE +G ++
Sbjct: 65  IECSSSTGRVIELVLDSTRNEEVGDWYFNASLFRPFQQLEWLSLSYNRIAGWVEIKGPNN 124

Query: 120 REVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSI-DVKEFDSF---- 174
                L N+     +G+SF   +LSSL    ++ ++ L+ N  +G+I +++   S     
Sbjct: 125 LRYLSLKNITT---NGSSFQ--LLSSLGAFPNLTTVYLNDNDFKGTILELQNLSSLEKLY 179

Query: 175 --------NNLEVLD-------MKRNEIDNLVVPQGFPH-FKSLEHLDMSYAHIALNTNF 218
                   N++++L        +   E+  +V  QGF +  K+LEHL  S +   L+ + 
Sbjct: 180 LNGCFLDENSIQILGALSSLKYLSLYEVSGIVPSQGFLNILKNLEHLYSSNS--TLDNSI 237

Query: 219 LQIIGESMPSLKHLSLSN------------------------------FSPSNDSWTLNQ 248
           LQ IG ++ SLK L L                                  P   + T  Q
Sbjct: 238 LQSIG-TITSLKILELVKCRLNGQLPIGLCNLNNLQELDMRDNDISGFLIPCLANLTSLQ 296

Query: 249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS-G 307
            L LS+NH +IP+S  PL+N S+LK FH  +NEI+AE  + H+L +P FQL+SL LS+ G
Sbjct: 297 RLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNL-SPKFQLQSLYLSNHG 354

Query: 308 YG-------------------------------------------------DGPFRLPIH 318
            G                                                  GPF LP +
Sbjct: 355 QGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKN 414

Query: 319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT 378
           SH +L +L +S N  QG IP EIG  LP L+  ++S N  +GSIPSS       ++ +L+
Sbjct: 415 SHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLS 474

Query: 379 N-----------------VRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW 421
           N                   +L+L  N   G IP S+S C  L+ L ++NNNLS +IP W
Sbjct: 475 NNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSMSNCSSLQLLDVSNNNLSPRIPGW 534

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH----LLSI-- 475
           + +++ L  + + +N+  GP+P        L+ + +S N + G +   F+    LL++  
Sbjct: 535 IWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYNFSTLLTLDL 594

Query: 476 ----------EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF 525
                     E I  LS L +L+L++N LEGE+P+QLC L+ L L+DLS N+L G I   
Sbjct: 595 SHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSC 654

Query: 526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL 585
             + A             PF        T+  + + S +  EFTTK+ +  Y+G ++ L 
Sbjct: 655 MTSLA-------------PFSAL-----TDATIVETSQQYLEFTTKNVSLIYRGSIVKLF 696

Query: 586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG 645
           SGID SCN   G IPP I NL++I+ LNLSHN+L G IP TFS+L+   +LDLS+NKL+G
Sbjct: 697 SGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDG 756

Query: 646 KIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP-ICRSPA 704
           +IP QL EL +  +FS A NNLSGK P   AQFATF ES YK NPFLCG PLP IC +  
Sbjct: 757 EIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASM 816

Query: 705 TMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVE 759
                S NNE +   ID   F+++F I+YI+++  I+ VLY+NPYWRR WF+  E
Sbjct: 817 LPSPTSMNNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 328/971 (33%), Positives = 457/971 (47%), Gaps = 266/971 (27%)

Query: 2   VIMFVLLLIIFEGGWSEGCLDHERFALLQLKHFFNDP-VNYLHDWVDAKGATDCCQWANV 60
           VIM + ++++ +G    GCL+ ER ALLQ+K  F+ P  ++ H W   + A +CC+W  V
Sbjct: 10  VIMIINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSW--GRDA-NCCEWKQV 66

Query: 61  ECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEG---- 116
           +CN+TT RV+++ LS +R  EL +W LNA LF PF +L +L+L  N IAGC+ENEG    
Sbjct: 67  QCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERL 126

Query: 117 -----------------------------------------------ASSREVTRLNNLK 129
                                                              EV +++NL+
Sbjct: 127 SVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLE 186

Query: 130 MFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNL------------ 177
             DL GN F+NSILSS   LSS+++L L  N L+G+ ++K    F NL            
Sbjct: 187 YLDLGGNRFDNSILSSFKGLSSLKNLGLEKNHLKGTFNMKGIRGFGNLSRVRLFNITANG 246

Query: 178 -----------------EVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQ 220
                            + LD+  N  +  ++ Q  P  K+L  LD+S +   L+ +FLQ
Sbjct: 247 RRISLPLLQSLAKLPNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSS--TLDNSFLQ 304

Query: 221 IIG----------------------ESMPSLKHLSLSNFSPSNDSWT------------L 246
            IG                      E +  LKHL   +   SN+S T            L
Sbjct: 305 TIGRITTLTSLKLNGCRLSGSIPIAEGLCELKHLQ--SLDISNNSLTGVLPKCLANLTSL 362

Query: 247 NQV------------------------LWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282
            Q+                        L LS+N+F+IPIS     NHS LK F  YNNEI
Sbjct: 363 KQIDLSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEI 422

Query: 283 HAEITESHSLTAPTFQLKSLSLSS-GYG-------------------------------- 309
            AE+ E H+L  P FQL+ L LS   YG                                
Sbjct: 423 CAEL-EEHNLI-PKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNW 480

Query: 310 ------------------DGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCF 351
                              GPF+LPIH H SL  LD+S+N+    IP EIG   PSL+  
Sbjct: 481 LLENNTNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLT-- 538

Query: 352 NISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNN 411
                                         +L + +NHF G IP S      L  L L+ 
Sbjct: 539 ------------------------------FLSMSKNHFNGIIPSSFGYMSSLLVLDLSE 568

Query: 412 NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 471
           NN+SGK+P    +L  L H+ + +N L+G +   F +   L  LD+S N ++G++     
Sbjct: 569 NNISGKLPSCFSSLP-LVHVYLSQNKLQGSLEDAFHKSFELITLDLSHNQLTGNIS---- 623

Query: 472 LLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL 531
               E I   S +S+L+L +NNLEG +P QLC L++L  +DLS N   G I P       
Sbjct: 624 ----EWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSHNKFSGHILPCLR---- 675

Query: 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKK-SHEIFEFTTKSNAYTYQGRVLSLLSGIDL 590
                        F  S  + N     ++    E  E TTKS +Y+Y   +L+++SG+DL
Sbjct: 676 -------------FRSSIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILNIMSGMDL 722

Query: 591 SCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ 650
           SCN L G IPP IGNL  I +LNLS+N L G IP TFS L    +LDLS N L G IP  
Sbjct: 723 SCNNLTGEIPPEIGNLNHIHVLNLSNNFLIGPIPQTFSNLSEVESLDLSNNSLTGAIPPG 782

Query: 651 LVELNAFVVFSFACNNLSGKI-PELTAQFATFNESSYKGNPFLCGLPLPI-CRS-----P 703
           LV+L+   VFS A NNLSG+  P +  QF+TFNESSY+GNP LCG PL   C +      
Sbjct: 783 LVQLHYLEVFSVAHNNLSGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCTTQEEEEA 842

Query: 704 ATMPE-ASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWI 762
           +++P+  ST++  +   +DT  F+++F ++YI+++     +LY+NP WRR WFY ++  I
Sbjct: 843 SSLPKRTSTDDIEESGFMDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWFYFIKQSI 902

Query: 763 ASCYYFVVDNL 773
            +CYYF VDNL
Sbjct: 903 NNCYYFFVDNL 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 334/1006 (33%), Positives = 467/1006 (46%), Gaps = 246/1006 (24%)

Query: 4    MFVLLLIIFEGGW---SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANV 60
            M + +L+   G W     GCL+ ER  LL+++   +     L  WVD+   ++CC+W  +
Sbjct: 5    MLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSLIDPDGFSLRHWVDS---SNCCEWDGI 61

Query: 61   ECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSR 120
            EC+NTT RVI+L LS  R     +W LNA LF PF++L+SL L  N + GC+ENEG    
Sbjct: 62   ECDNTTRRVIELSLSGARDQSFGDWVLNASLFLPFKELQSLELRFNGLVGCLENEGFEVL 121

Query: 121  E----------------------VTRLNNLKMFDLSGNS--------------------- 137
                                   +T L+ LK  DLSGN                      
Sbjct: 122  SSNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLDL 181

Query: 138  ----FNNSILSSLTRLSSVRSLKLSYNRLEGSIDV------------------------- 168
                FN+SILS L  LS ++SL LS N L GS  V                         
Sbjct: 182  SYNIFNDSILSHLRGLSYLKSLNLSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPINFL 241

Query: 169  KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS 228
            +   +  +L+VL +   ++   +  QG+   K+L  LD+S  +  L  +    +G ++ S
Sbjct: 242  QNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSGNN--LGGSLPDCLG-NLSS 298

Query: 229  LKHLSLS--NFSPSNDSWTLN-----QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNE 281
            L+ L +S   F+ +  S  L      + L LSNN F +PIS  P  NHS LK F + NN+
Sbjct: 299  LQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNK 358

Query: 282  IHAE--------------------ITESHSLTAPTF------------------------ 297
            +  E                     TE+ ++  P F                        
Sbjct: 359  LVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSW 418

Query: 298  ------QLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCF 351
                  +L+ L LS+    G  +L  H + ++  LD+SNNN  G IP +I  I P++   
Sbjct: 419  LLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSL 478

Query: 352  NISMNALDGSIPSSFEGHMFS--------------KNFNLTNVRWLLLEENHFVGEIPQS 397
             ++ N   G IPS   G++ S              K   LT + +L L  N+  G++P S
Sbjct: 479  RMANNGFTGCIPSCL-GNISSLKILDLSNNQLSIVKLEQLTTIWFLKLSNNNLGGQLPTS 537

Query: 398  LSKCFLLKGLYLNNNNL-------------------------SGKIPQWLGNLTGLQHII 432
            +     L+ LYL+ NN                          SG +P+WL N TGL  I 
Sbjct: 538  VFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAID 597

Query: 433  MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI----NGLSG----- 483
            + KN+ +GPI  +FC+L+ L+ LD+S+NN+SG +PSCF    I  +    N LSG     
Sbjct: 598  LSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG 657

Query: 484  ------LSHLILAHNNL------------------------EGEVPVQLCGLNQLQLLDL 513
                  L  + L  NN                         +GE+PVQLC L QL +LD+
Sbjct: 658  FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDV 717

Query: 514  SDNNLHGLIPPFFYNTALHESYNNNSS------LDKPFEISFDFRNTEKKVEKK------ 561
            S N L G +P    N    ES     +      L +  E ++        VE        
Sbjct: 718  SQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKG 777

Query: 562  -----SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH 616
                 + E+ EFTTK+  Y Y+G+ LS +SGIDLS N  +G IPP  G+L++I  LNLSH
Sbjct: 778  FLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSH 837

Query: 617  NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA 676
            NNLTG+IP+TFS L+   +LDLSYN LNG IP QL ++    VFS A NNLSG  PE   
Sbjct: 838  NNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKY 897

Query: 677  QFATFNESSYKGNPFLCGLPL------------PICRSPATMPEASTNNEGDDNLIDTGN 724
            QF TF+ES Y+GNPFLCG PL            P+   P        + +GDD  ID   
Sbjct: 898  QFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEF 957

Query: 725  FFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVV 770
            F+I F + Y +++  I++VLY++PYWRRRW Y +E  I +CYYFVV
Sbjct: 958  FYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 321/958 (33%), Positives = 451/958 (47%), Gaps = 204/958 (21%)

Query: 1   MVIMFVLLLIIFEGGW---SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQW 57
           M    +L L+   G W     GCL+ ER  LL++++  +     L DW+D   +  CC+W
Sbjct: 1   MGTWMLLALLTLVGEWHGRCYGCLEEERVGLLEIQYLIDPNHVSLRDWMDINSS--CCEW 58

Query: 58  ANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGA 117
             ++C+NTT RVIQL L   R   L +W LNA LF PF++L+SL L   ++ GC+ENEG 
Sbjct: 59  DWIKCDNTTRRVIQLSLGGERDESLGDWVLNASLFQPFKELQSLDLGMTSLVGCLENEGF 118

Query: 118 SSREVTRLNNLKMFDLSGNSFNN--SILSSLT-RLSSVRSLKLSYNRLEGS--------- 165
                ++L NL   DLS N FNN  SILS     LS+++SL LS N L            
Sbjct: 119 EVLS-SKLRNL---DLSANGFNNDKSILSCFNGNLSTLKSLDLSANGLTAGSGTFFNSST 174

Query: 166 -----ID--------VKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHI 212
                +D        ++   +   L+VL +   ++   +  QG+   K+L+ LD++    
Sbjct: 175 LEELYLDNTSLRINFLQNIGALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLA---- 230

Query: 213 ALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN----------QVLWLSNNHFRIPIS 262
               NF   + + + +L  L L + S +  +              + L LSNN F +PIS
Sbjct: 231 --RNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPIS 288

Query: 263 PDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQL----------------------- 299
             P  NHS LK F + NN +  E     +L  P FQL                       
Sbjct: 289 MKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYY 347

Query: 300 -----------------------------KSLSLSSGYGDGPFRLPIHSHKSLRLLDVSN 330
                                        + L LS+ +  G  +L  H + ++  LD+SN
Sbjct: 348 QLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISN 407

Query: 331 NNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS-------------------------- 364
           NN  G I  +I  I P+L    ++ N   G IPS                          
Sbjct: 408 NNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQL 467

Query: 365 ----------SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ-SLSKCFLLKGLYLNNNN 413
                     S  G + +  FN +  ++L L  N+F G+I    L     L  L L+NN 
Sbjct: 468 TIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQ 527

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF--- 470
            SG +P+   N T L+ + + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF   
Sbjct: 528 FSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPP 587

Query: 471 ------------------------HLLSIE-QINGLSG-----------LSHLILAHNNL 494
                                   +L++++ + N L+G           LS L+L  N+ 
Sbjct: 588 PLTHVHLSKNRLSGPLTYGFFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHF 647

Query: 495 EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNT 554
           +GE+PVQLC L QL +LD+S N L G +P    N    ES +  + +D     S    + 
Sbjct: 648 DGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKES-SQKARMD--LGASIVLESM 704

Query: 555 EKKVEKK--------------------SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK 594
           EK   K                     + E+ EF TK+  Y Y+G +LS +SGIDLS N 
Sbjct: 705 EKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNN 764

Query: 595 LIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654
             G IP   GNL+ I+ LNLSHNN T +IP+TFS L+   +LDLSYN LNG IP QL E+
Sbjct: 765 FGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEI 824

Query: 655 NAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP--ICRSPATMPEASTN 712
               VFS A NNLSG  PE   QF TF+ES Y+GNPFLCG PL       P +      +
Sbjct: 825 TTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDD 884

Query: 713 NEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVV 770
            +GD   ID   F+I+F + Y +++  I  VLY+NPYWRRRW Y +E  I +CYYF+V
Sbjct: 885 EQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 320/864 (37%), Positives = 447/864 (51%), Gaps = 186/864 (21%)

Query: 40  NYLHDWVDAKGATDCCQWANVEC--------NNTTGRVIQ-------LYLSNTR---SME 81
           N +  WV+ KG  +  + +N+E         NN+    ++       LYL   R   S++
Sbjct: 110 NRIAGWVEKKGGYELQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSID 169

Query: 82  LEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS 141
           L+E             LE+LSL  NNI+  V     +SRE+  L++L+   L   S +  
Sbjct: 170 LKE---------SLTSLETLSLGGNNISNLV-----ASRELQNLSSLESLYLDDCSLDEH 215

Query: 142 ILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV---------- 191
            L SL  L S+++L L    L G++    F    NLE LD+    ++N +          
Sbjct: 216 SLQSLGALHSLKNLSL--RELNGAVPSGAFLDLKNLEYLDLSYITLNNSIFQAIRTMTSL 273

Query: 192 -------------VP--QGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN 236
                        +P  QGF + K+LE+LD+S     L+ N LQ IG +M SLK LSLS+
Sbjct: 274 KTLNLMGCSLNGQIPTTQGFLNLKNLEYLDLS--DNTLDNNILQTIG-TMTSLKTLSLSS 330

Query: 237 --------------------------------FSPSNDSWTLNQVLWLSNNHFRIPISPD 264
                                             P   + T  Q L LS NHF+IP+S  
Sbjct: 331 CKLNIQIPTTQGLCDLNHLQVLYMYDNDLSGFLPPCLANLTSLQRLDLSYNHFKIPMSLR 390

Query: 265 PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS-GYG-------------- 309
           PL+N S+LK F   +NEI AE  + H+L +P FQL+SL LSS G G              
Sbjct: 391 PLYNLSKLKSFDGSSNEIFAE-EDDHNL-SPKFQLESLYLSSIGQGARALPKFLYHQFNL 448

Query: 310 -----------------------------------DGPFRLPIHSHKSLRLLDVSNNNFQ 334
                                               GPF LP +SH +L +L +S N+FQ
Sbjct: 449 QFLDLTNIQIQGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSILSISMNHFQ 508

Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
           G IP EIG  LP L    +S N  +GSIP S          N+++++WL L  N   G+I
Sbjct: 509 GQIPSEIGAHLPGLEVLFMSDNGFNGSIPFSLG--------NISSLQWLDLSNNILQGQI 560

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
           P  +     L+ L L+ NN SG++P   G  + L+++ + +N L+GPI + F     +  
Sbjct: 561 PGWIGNMSSLEFLDLSGNNFSGRLPPRFGTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFA 620

Query: 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 514
           LD+S NN++G +P        + I+ LS L  L+L++NNLEGE+P+QL  L+QL L+DLS
Sbjct: 621 LDLSHNNLTGRIP--------KWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLS 672

Query: 515 DNNLHGLIPPFFYNTALHESYNNNSSLDKPFEIS-FDFRNTEKKVEKKSHEIFEFTTKSN 573
            N+L G I  +  +T            + P E + FDF          SH+ FEFTTK+ 
Sbjct: 673 HNHLSGNILSWMISTH-----------NFPVESTYFDFLAI-------SHQSFEFTTKNV 714

Query: 574 AYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAY 633
           + +Y+G ++    GID SCN   G IPP IGNL+ I++LNLSHN+LTG IP TFS L+  
Sbjct: 715 SLSYRGDIIWYFKGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEI 774

Query: 634 RNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
            +LDLSYNKL+G+IP +L EL +  VFS A NNLSG  P   AQFATF E+ YK NPFLC
Sbjct: 775 ESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGNTPVRVAQFATFEENCYKDNPFLC 834

Query: 694 GLPLP-IC---RSPATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPY 749
           G PLP IC    SP+  P  STNN+ +   +D   F++TF ++YI+++  I  VLY+NPY
Sbjct: 835 GEPLPKICGAAMSPSPTP-TSTNNKDNGGFMDIEVFYVTFWVAYIMVLLVIGAVLYINPY 893

Query: 750 WRRRWFYLVEMWIASCYYFVVDNL 773
           WRR WF+ +E+ I +CYYF+VDNL
Sbjct: 894 WRRAWFHFIEVSINNCYYFLVDNL 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 323/985 (32%), Positives = 444/985 (45%), Gaps = 239/985 (24%)

Query: 19   GCLDHERFALLQLKHFF--NDPVNYLHDWVDAK-GATDCCQWANVECNNTTGRVIQLYLS 75
            GCL+ ER  LL++K     N     L DW+D K    +CC+W+ + C+NTT RVIQL L 
Sbjct: 27   GCLEDERIGLLEIKALIDPNSVQGELSDWMDNKEDIGNCCEWSGIVCDNTTRRVIQLSLM 86

Query: 76   NTRSMELEEWYLNAYLFTPF-----------------------------QQLESLSLSAN 106
              R   L +W LNA LF PF                             ++L  L LS N
Sbjct: 87   RARDFRLGDWVLNASLFLPFEELQSLDLGETGLVGCSENEGFGTLSSKLRKLHVLGLSYN 146

Query: 107  -----NIAGCVENEGASSREV-------------------TRLNNLKMFDLSGNSFNNSI 142
                 +I  C     +                        +RL  L+   L GN +N+SI
Sbjct: 147  KFYSDSILSCFTGLSSLKSLDLSWNTLTGSANFYGLNVLSSRLKKLENLHLRGNQYNDSI 206

Query: 143  LSSLTRLSSVRSLKLSYNRLEGSIDVKE--FDSFN-----------------------NL 177
             SSLT  SS++SL LSYN L GS  +    F+S                          L
Sbjct: 207  FSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVLPAL 266

Query: 178  EVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN- 236
            +VL     +++  +  QG    K+LE L +S  ++      L    +++ SL+ L +S  
Sbjct: 267  KVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLE---GSLPDCFKNLSSLQLLDVSRN 323

Query: 237  -------FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES 289
                    SP  +  +L + + LSNNHF++PIS  P  NHS L+ F + NN +  E    
Sbjct: 324  QFIGNIASSPLTNLLSL-EFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSF 382

Query: 290  HSLTAPTFQLKSLSLSSGYGD--------------------------------------- 310
            H L  P FQL   SLS    +                                       
Sbjct: 383  HDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNT 441

Query: 311  -------------GPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNA 357
                         G  +L  H +  +  +D+SNNN  G IP  I  I  +L    ++ N 
Sbjct: 442  RLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNG 501

Query: 358  LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFV-------------GEIPQSLSKCFLL 404
            L G IPS           +L+N +  ++E   F+             G++P S+     L
Sbjct: 502  LTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFITLTFLKLSNNNLGGQLPASMVNSSRL 561

Query: 405  KGLYLNNNNL-------------------------SGKIPQWLGNLTGLQHIIMPKNHLE 439
              LYL++NN                          SG +P+W  NLT +  I + KNH  
Sbjct: 562  NYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFN 621

Query: 440  GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI----NGLSG------------ 483
            GPIPVEFC+LD L+ LD+SDNN+  S+PSCF+   I  +    N LSG            
Sbjct: 622  GPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSL 681

Query: 484  -------------LSHLI----------LAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520
                         +S+ I          L  NN +GE  VQLC L QL +LD+S N L G
Sbjct: 682  VTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSG 741

Query: 521  LIPPFFYNTALHESYNNNSSLDKPFEIS--------FDFRNTEK-----KVEKKSHEIFE 567
             +P    N +  ESY   +S+D  F           ++F  T        +   + E+ E
Sbjct: 742  PLPSCLGNLSFKESYEK-ASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIE 800

Query: 568  FTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTF 627
            FT KS  Y Y+G++LS +SGIDLS NK  G IPP +GNL+ +  LNLSHNNLTG+IP+TF
Sbjct: 801  FTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATF 860

Query: 628  SKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYK 687
            S L+   + DLSYN L+G IP +L E+    VFS A NNLSG+ PE   QF TF+ESSY+
Sbjct: 861  SNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYE 920

Query: 688  GNPFLCGLPLPICRSPATMPEASTNNEG--DDNLIDTGNFFITFTISYIILIFGIIIVLY 745
            GNPFLCG PL    S    P     N+   DD  ID   F+I+  + YI+++ GI  VLY
Sbjct: 921  GNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLY 980

Query: 746  VNPYWRRRWFYLVEMWIASCYYFVV 770
            +NPYWR  WF  ++  I +C+ F++
Sbjct: 981  INPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 295/801 (36%), Positives = 414/801 (51%), Gaps = 148/801 (18%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
           L  L L  N I     + G       RLN L++ +LS N  N+S LS L  LSS++ L L
Sbjct: 2   LVELRLGGNEIQNFATSTGF--ERSLRLNKLEILELSFNKINDSTLSFLEGLSSLKHLNL 59

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
             N+L+GSID+K       L+ LD+  N+++ L  P    +  +L+ LD+S+ + + N +
Sbjct: 60  DNNQLKGSIDMKGLCELKQLQELDISYNDLNGL--PSCLTNLNNLQVLDISFNNFSGNIS 117

Query: 218 FLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA 277
             +I   S+ S++ L LS+                  NHF+IPIS  P FN S LK  + 
Sbjct: 118 LSRI--GSLTSIRDLKLSD------------------NHFQIPISLGPFFNLSNLKNLNG 157

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSS-GYG--------------------------- 309
            +NEI+      H+L  P FQL+ LSL+  G+G                           
Sbjct: 158 DHNEIYESTELVHNLI-PRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEF 216

Query: 310 ---------------------DGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSL 348
                                 G  +LP  SH +L  LD+S N+ Q  IP +IG   P L
Sbjct: 217 PSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWL 276

Query: 349 SCFNISMNALDGSIPSS-----------------------------------------FE 367
              N+S N   GSIPSS                                          +
Sbjct: 277 EFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLK 336

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
           G  F ++FNL  +  L+L  N   G +P SLS    L+ L ++ NNLSGKIP+W+G ++ 
Sbjct: 337 GQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSS 396

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL----PSCFHLLSI-------- 475
           LQ++ + +N+L G +P  FC    +  + +S N + GSL      C  L  +        
Sbjct: 397 LQYLDLSENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFG 456

Query: 476 ----EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFF----- 526
               E I  L  LS L+L +NNLEG++P QLC L +L L+DLS N+L G I P       
Sbjct: 457 GGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSK 516

Query: 527 ----YNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL 582
                 T+L+ S N+    ++  +I F     E     KS    EFTTKS +Y+++G +L
Sbjct: 517 WQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKS---VEFTTKSISYSFKGIIL 573

Query: 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642
             +SGIDLSCN L G IP  +GNL+ IQ+LNLSHN+LTG IP TFS L+   +LDLSYN 
Sbjct: 574 KYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNN 633

Query: 643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP--IC 700
           LNG+IPRQL++LN    FS A NNLSGK PE+ AQF+TFN+S Y+GNP LCG PL     
Sbjct: 634 LNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCT 693

Query: 701 RS--PATMPEASTNNEGDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLV 758
           R+  P+ +P + T+ + ++ +ID   F +TF+++YI+++  I  VLY+NP WRR WFY +
Sbjct: 694 RALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFI 753

Query: 759 EMWIASCYYFVVDNL-IPKRF 778
              I +CYYF+VDNL +P RF
Sbjct: 754 GESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/839 (36%), Positives = 433/839 (51%), Gaps = 147/839 (17%)

Query: 31  LKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQ--------LYLSNTRSMEL 82
           LK  + D  N L   +D K +    +   +  NN    V          LYL +  + E 
Sbjct: 154 LKSLYLD-YNRLEGLIDLKESLSSLEVLGLSGNNIDKLVASRGPSNLTTLYLHDITTYES 212

Query: 83  EEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI 142
               L +     F  L +L L+ N+  G +  +     E+  L++LK   + G S +   
Sbjct: 213 SFQLLQS--LGAFPSLMTLYLNKNDFRGRILGD-----ELQNLSSLKSLYMDGCSLDEHS 265

Query: 143 LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLE------------------------ 178
           L SL  L S+++L L    L GS+  + F    NLE                        
Sbjct: 266 LQSLGALPSLKNLLL--RALSGSVPSRGFLDLKNLEYLDLNLNTLNNSIFQAIRMMTFLK 323

Query: 179 VLDMKRNEIDNLV-VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLS---- 233
            L++   ++D  + + QGF + K+LEHLD+S     L+ +  Q IG  +  L HL     
Sbjct: 324 ALNLHGCKLDGRIPLAQGFLNLKNLEHLDLSSN--TLDNSIFQTIG--LCDLNHLQQLYM 379

Query: 234 ----LSNF-SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITE 288
               LS F  P   + T  Q L LS NH +IP+S  PL+N S+LK F   +NEI+AE  +
Sbjct: 380 YDNDLSGFLPPCLANLTSLQQLDLSFNHLKIPMSLSPLYNLSKLKYFIGSDNEIYAE-ED 438

Query: 289 SHSLTAPTFQLKSLSLSS-GYGDG------------------------------------ 311
            HSL+ P FQL+S+SLS+ G G G                                    
Sbjct: 439 DHSLS-PKFQLESISLSNRGQGAGAFPKFLYHQFSLQSFDLTNIQIKGEFPNWLIENNTH 497

Query: 312 -------------PFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNAL 358
                        PF LP +SH +L  L +S N FQG IP+EIG  LP L    +S N  
Sbjct: 498 LHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGQIPLEIGARLPGLEVLFMSSNGF 557

Query: 359 DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKI 418
           +GSIP S          N+++++ L L  N   G+IP  +     L+ L L+ NN SG++
Sbjct: 558 NGSIPFSLG--------NISSLKGLDLSNNSLQGQIPGWIGNMSSLEFLNLSGNNFSGRL 609

Query: 419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478
           P    + + L+++ + +N L+GPI + F     +  LD+S NN++GS+P        + I
Sbjct: 610 PPRF-DTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLTGSIP--------KWI 660

Query: 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
           + LS L  L+L++NNLEGE+P++LC L+QL L+DLS N+  G I  +  ++         
Sbjct: 661 DRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNILSWMISS--------- 711

Query: 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH 598
                PF   +D           S + FEFTTK+ + +Y+G ++   +GID SCN  IG 
Sbjct: 712 ----HPFPQQYD----SNDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIGE 763

Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFV 658
           IPP IGNL+ I++LNLSHN+LTG IP TFS L+   +LDLSYNKL+G+IP QL+EL    
Sbjct: 764 IPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFFLE 823

Query: 659 VFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP-LPICRS---PATMPEASTNNE 714
            FS A NNLSGK     AQFATF ES YK NPFLCG P L IC +   P+ MP  STNNE
Sbjct: 824 FFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPLLKICGTTMPPSPMP-TSTNNE 882

Query: 715 GDDNLIDTGNFFITFTISYIILIFGIIIVLYVNPYWRRRWFYLVEMWIASCYYFVVDNL 773
            D   ID   F++TF ++YI+++  I  +LY+NPYWRR WF+ +E+ I +CYYF+VDNL
Sbjct: 883 DDGGFIDMEVFYVTFGVAYIMVLLVISAILYINPYWRRAWFHFIEVSINNCYYFLVDNL 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	782
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.831	0.665	0.293	6.8e-51
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.896	0.701	0.277	1.4e-46
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.843	0.705	0.283	1.1e-45
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.644	0.522	0.299	2.9e-45
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.820	0.720	0.276	2.3e-43
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.618	0.446	0.294	2.8e-41
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.443	0.290	0.292	1.6e-40
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.551	0.594	0.271	6.8e-40
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.869	0.594	0.263	1.6e-39
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.782	0.489	0.268	1.8e-39

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 6.8e-51, P = 6.8e-51
 Identities = 214/729 (29%), Positives = 320/729 (43%)

Query:    74 LSNTRSMELEEWYLNAYLFTPFQQLESL---SLSANNIAGCVENEGASSREVTRLNNLKM 130
             L+  R ++L    L+  L   F  LESL   SLS NN  G       S   +  L  LK+
Sbjct:   283 LNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFF-----SLNPLANLTKLKV 337

Query:   131 FDLSGNS--FNNXXXXXXXXXXXXXXXXXXYNRLEGSIDVKEFDSFN-NLEVLDMKRNEI 187
             F LS  S                       +  L G I    F  +  NL ++D+  N +
Sbjct:   338 FRLSSTSEMLQVETESNWLPKFQLTVAALPFCSL-GKIP--NFLVYQTNLRLVDLSSNRL 394

Query:   188 DNLV---VPQGFPHFKSLEHLDMSYAHIALNT--NFLQIIGESMPSLKHLSLSNFSPSND 242
                +   + +  P  K L+  + S+    + T  + LQ++  S   +     +   P N 
Sbjct:   395 SGDIPTWLLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSANDI-----TGVLPDNI 449

Query:   243 SWTLNQVLWLSNNH--FR--IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298
                L ++L ++ +H  F+  +P S   + + S L +  +YNN    E+  S  L    F 
Sbjct:   450 GHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDL--SYNN-FSGELPRS--LLTGCFS 504

Query:   299 LKSLSLSSGYGDGPFRLPIHSH-KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNA 357
             L +L LS     GP  LPI +   SL +L + NN F G I V +  ++ +LS F+ S N 
Sbjct:   505 LITLQLSHNSFSGPI-LPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLV-NLSIFDASNNR 562

Query:   358 LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXSGK 417
             L G I SS          + +++  LLL  N   G +P SL                SG 
Sbjct:   563 LTGLISSSIPP-------DSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGD 615

Query:   418 IPQWLGN-LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476
             +P  + N + G++ I +  N   GP+PV    L+   ILD+ +N +SGS+P         
Sbjct:   616 LPSSVVNSMYGIK-IFLHNNSFTGPLPVTL--LENAYILDLRNNKLSGSIP--------- 663

Query:   477 QINGLSGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFF--YNTALHES 534
             Q      +  L+L  NNL G +P                   +G+IPP     +T L E 
Sbjct:   664 QFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEG 723

Query:   535 -----YNNNSSLDKPFEISFDFRNTEKKVE-----KKSHEI--FEFTTKSNAYTYQGRVL 582
                  ++   S     ++ F +R+T    E       ++ I   EF  K    ++ G  L
Sbjct:   724 IGLSGFSQEISFGDSLQMEF-YRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTL 782

Query:   583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642
               + G+DLS N+L G IP  +G+L++++ LNLS N L+ +IP+ FSKL+   +LDLSYN 
Sbjct:   783 DYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNM 842

Query:   643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP-ICR 701
             L G IP QL  L +  VF+ + NNLSG IP+   QF TFN++SY GNP LCG P    C 
Sbjct:   843 LQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQ-GGQFNTFNDNSYLGNPLLCGTPTDRSCE 901

Query:   702 SPATMPEASTNNE------GDDNLIDTGNFFITFTXXXXXXXXXXXXVLYVNPYWRRRWF 755
                   EA    E       D+  ID    + T              ++  +  WRR W 
Sbjct:   902 GKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWL 961

Query:   756 YLVEMWIAS 764
              +V+ +IAS
Sbjct:   962 CIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 215/774 (27%), Positives = 318/774 (41%)

Query:    26 FALLQLKHF------FNDPVNYLHDWVDAKGATDCCQWANVE----CNNTTGRVIQLYLS 75
             FAL +LK        F+  V     +   K  +  C W N+E     NN       L L+
Sbjct:   220 FALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLT 279

Query:    76 NT---RSMELEEWYLNAYLFTPFQQLESL---SLSANNIAGCVENEGASSREVTRLNNLK 129
             +    R ++L    L   + +    LESL   SL  NN  G   + G  +  +++L  L+
Sbjct:   280 SLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFF-SLGLLAN-LSKLKVLR 337

Query:   130 MFDLSGNSFNNXXXXXXXXXXXXXXXXXXYNRLEGSIDVKEFDSFN-NLEVLDMKRNEID 188
             + D   NS                        LE    V  F     +L  +D+  N+I 
Sbjct:   338 L-DSQSNSLEVEFETSWKPKFQLVVIALRSCNLE---KVPHFLLHQKDLHHVDLSDNQIH 393

Query:   189 NLVVPQGFPHFKSLEHL---DMSYAHIAL--NTNFLQIIGESMPSLKHLSLSNFSPSNDS 243
                      +   LE L   + S+    L  + + L  +  S+    HL L NF      
Sbjct:   394 GNFPSWLLENNTKLEVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFG----- 448

Query:   244 WTLNQVLW--LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS 301
             W L  ++   L+ N F+  + P  L N   ++     +N  H ++          + L  
Sbjct:   449 WILPHLVCVNLAYNGFQGNL-PSSLDNMKSIEFLDLSHNRFHGKLPRR--FLKGCYNLTI 505

Query:   302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
             L LS     G       +   L ++ + NN F G I       LPSL+  +IS N L G 
Sbjct:   506 LKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRS-LPSLNVLDISNNKLTGV 564

Query:   362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXSGKIPQW 421
             IPS        +   L  ++   L  N   GEIP SL                SG IP  
Sbjct:   565 IPS-----WIGERQGLFALQ---LSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPH 616

Query:   422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481
             + ++     +++  N+L G IP +   L+ + +LD+ +N +SG+LP        E IN  
Sbjct:   617 VSSIYHGAVLLLQNNNLSGVIP-DTLLLNVI-VLDLRNNRLSGNLP--------EFIN-T 665

Query:   482 SGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTAL-----HESYN 536
               +S L+L  NN  G++P                   +G IP    NT+       +SY 
Sbjct:   666 QNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYR 725

Query:   537 NN-----SSLDKP--FEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGID 589
              +      +   P  FE            E  S    EF TK     Y G  L LL G+D
Sbjct:   726 YDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMD 785

Query:   590 LSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR 649
             LS N+L G IP  +G L  ++ LNLSHNNL+G I  +FS L+   +LDLS+N+L G IP 
Sbjct:   786 LSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPL 845

Query:   650 QLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPI-CRSPATMPE 708
             QL ++ +  VF+ + NNLSG +P+   QF TF   SY GNP LCG  + I C S    P 
Sbjct:   846 QLTDMISLAVFNVSYNNLSGIVPQ-GRQFNTFETQSYFGNPLLCGKSIDISCASNNFHP- 903

Query:   709 ASTNNEGDDNLIDTGNFFITFTXXXXXXXXXXXXVLYVNPYWRRRWFYLVEMWI 762
                  E D++ +D  +F+ +F              L  +  W R WFY+V+ ++
Sbjct:   904 TDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 1.1e-45, P = 1.1e-45
 Identities = 210/741 (28%), Positives = 328/741 (44%)

Query:    63 NNTTGRV-IQLY--LSNTRSMELEEWYLNAYL---FTPFQQLESLSLSANNIAGCVENEG 116
             N+  G + I+++  L N R ++L+  +    +       ++L  L LS+N ++G + +  
Sbjct:   231 NHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSF 290

Query:   117 ASSREVTRLNNLKMFDLSGNSFNNXXXXXXXXXXXXXXXXXXYNRLEGSIDVKEFDSFNN 176
             +S      L +L+   LS N+F+                     R      +  F  +  
Sbjct:   291 SS------LESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVL-RFCSLEKIPSFLLYQK 343

Query:   177 -LEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKH-LSL 234
              L ++D+  N +   +      +   LE L +       N +F       +P++ H L +
Sbjct:   344 KLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQ------NNSFTIF---PIPTMVHNLQI 394

Query:   235 SNFSPSN-----DSW--TLNQVLWL--SNNHFR--IPISPDPLFNHSRLKIFHAYNNEIH 283
              +FS +N     D     L  ++ L  SNN F+   P S   + N S L +  +YNN   
Sbjct:   395 FDFSANNIGKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDL--SYNN-FS 451

Query:   284 AEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSH-KSLRLLDVSNNNFQGCIPVEIG 342
              ++  S  +T     +  L LS     G F LP  ++  SL +L + NN F G I   + 
Sbjct:   452 GKLPRSF-VTG-CVSIMFLKLSHNKFSGRF-LPRETNFPSLDVLRMDNNLFTGNIGGGLS 508

Query:   343 DILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF 402
             +    L   ++S N L G+IP           F    + ++L+  N   G IP SL    
Sbjct:   509 NST-MLRILDMSNNGLSGAIPRWL--------FEFPYLDYVLISNNFLEGTIPPSLLGMP 559

Query:   403 XXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
                         SG +P  + +  G+ ++ +  N+  GPIP     L  +QILD+ +N +
Sbjct:   560 FLSFLDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPDTL--LKSVQILDLRNNKL 616

Query:   463 SGSLPSCFHLLSIEQI----NGLSG--------LSH---LILAHNNLEGEVPVXXXXXXX 507
             SGS+P      SI  +    N L+G        LS+   L L+ N L G +P        
Sbjct:   617 SGSIPQFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSF 676

Query:   508 XXXXXXXXXXXHGLIPPFFYNTALH-ESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
                           IPP F  T+L  E Y +   +DK   I  D R+T ++ E K     
Sbjct:   677 GRLQEDAMALN---IPPSFLQTSLEMELYKSTFLVDK---IEVD-RSTYQETEIKFAAKQ 729

Query:   567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPST 626
              + + S    +   +L L+ G+DLS N+L G IP  +G+L +++ LNLSHN+L G+IPS+
Sbjct:   730 RYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSS 789

Query:   627 FSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSY 686
             FSKL    +LDLS+N L G IP+ L  L +  VF  + NNLSG IP+   QF TF E SY
Sbjct:   790 FSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQ-GRQFNTFEEESY 848

Query:   687 KGNPFLCGLPLP-ICRSPATMPEASTNNEGDDN--LIDTGNFFITFTXXXXXXXXXXXXV 743
              GNP LCG P    C +  +  EA    E +D+   ID   F+ +              +
Sbjct:   849 LGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVL 908

Query:   744 LYVNPYWRRRWFYLVEMWIAS 764
             +  +  WRR W  +V+ +IAS
Sbjct:   909 MCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 2.9e-45, P = 2.9e-45
 Identities = 164/548 (29%), Positives = 246/548 (44%)

Query:   239 PSNDSWTLNQVLWL--SNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPT 296
             P N  W    + +L  S N+F+  + P  L N + ++      N  H  +  S       
Sbjct:   430 PENIGWIFPHLRYLNTSKNNFQENL-PSSLGNMNGIQYMDLSRNSFHGNLPRS--FVNGC 486

Query:   297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN 356
             + +  L LS     G       +  ++  L + NN F G I   +  ++ +L   ++S N
Sbjct:   487 YSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLI-NLELLDMSNN 545

Query:   357 ALDGSIPS------SFEGHMFSKNF----------NLTNVRWLLLEENHFVGEIP-QSLS 399
              L G IPS      S    + S NF          N ++++ L L  N   G IP Q  S
Sbjct:   546 NLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDS 605

Query:   400 KCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD 459
             +              SG IP  L  L  ++ + +  N   G IP EF  +  + IL +  
Sbjct:   606 R--NGVVLLLQDNKLSGTIPDTL--LANVEILDLRNNRFSGKIP-EFINIQNISILLLRG 660

Query:   460 NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VXXXXXXXXXXXXXXXXXX 518
             NN +G +P   H     Q+ GLS +  L L++N L G +P                    
Sbjct:   661 NNFTGQIP---H-----QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYD 712

Query:   519 HGLIPP--FFYNTALHESYNNNSSLDKPFE--ISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
              G+  P   F   +LH+ +++N +    F+  ++ D  + + K   ++    EF TK   
Sbjct:   713 FGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTK--IEFATKHRY 770

Query:   575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYR 634
               Y G  L LL G+DLS N+L G IP   G L  ++ LNLSHNNL+G IP + S +E   
Sbjct:   771 DAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKME 830

Query:   635 NLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG 694
             + DLS+N+L G+IP QL EL +  VF  + NNLSG IP+   QF TF+  SY GN  LCG
Sbjct:   831 SFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQ-GRQFNTFDAESYFGNRLLCG 889

Query:   695 LPLPICRSPATMPEASTNNEGDDNLIDTGNFFITFTXXXXXXXXXXXXVLYVNPYWRRRW 754
              P     +  +  EA    E D+++ID  +F+++F              L  +  W R W
Sbjct:   890 QPTNRSCNNNSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFW 949

Query:   755 FYLVEMWI 762
             FY V+ +I
Sbjct:   950 FYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 2.3e-43, P = 2.3e-43
 Identities = 201/726 (27%), Positives = 311/726 (42%)

Query:    75 SNTRSMELEEWYLNA---YLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
             S  R ++L   +L+    Y  + F+ +E LSL  N+  G       S   +T L  LK+F
Sbjct:   202 SKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLF-----SLGLITELTELKVF 256

Query:   132 DLSGNSF------NNXXXXXXXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
              LS  S        N                    ++ G +  ++      L V+D+  N
Sbjct:   257 KLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQ-----ELRVIDLSNN 311

Query:   186 EIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQI-IGESMPSLKHLSLS--NFS---P 239
              +  +     FP +  LE+     A +  N +F  + +  +M  L+ L LS  NF+   P
Sbjct:   312 ILSGV-----FPTWL-LENNTELQALLLQNNSFKTLTLPRTMRRLQILDLSVNNFNNQLP 365

Query:   240 SNDSWTLNQV--LWLSNNHFRIPISPDPLFNHSRLKIFH-AYNNEIHAEITESHSLTAPT 296
              +    L  +  L LSNN F +   P  +     ++    +YNN    ++  +  L    
Sbjct:   366 KDVGLILASLRHLNLSNNEF-LGNMPSSMARMENIEFMDLSYNN-FSGKLPRN--LFTGC 421

Query:   297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN 356
             + L  L LS     GP         SL  L + NN F G IP  + + L  LS  ++S N
Sbjct:   422 YSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLN-LRMLSVIDLSNN 480

Query:   357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXSG 416
              L G+IP  + G+ F +   ++N        N   G IP SL                SG
Sbjct:   481 LLTGTIPR-WLGNFFLEVLRISN--------NRLQGAIPPSLFNIPYLWLLDLSGNFLSG 531

Query:   417 KIPQWLGNLTGLQHII-MPKNHLEGPIPVEFCQLDW--LQILDISDNNISGSLPSCFHLL 473
              +P  L + +   +I+ +  N+L G IP       W  L++LD+ +N +SG++P      
Sbjct:   532 SLP--LRSSSDYGYILDLHNNNLTGSIPDTL----WYGLRLLDLRNNKLSGNIPL----- 580

Query:   474 SIEQINGLSGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHE 533
                       +S ++L  NNL G++PV                  +  IP    N +   
Sbjct:   581 ----FRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGS 636

Query:   534 SYNNNSSLD-KPFEISFDFRNTEKKVEKKS---HEIF------------EFTTKSNAYTY 577
               ++N+  D  P  +  +F     +V  +S    + F            EF  K     Y
Sbjct:   637 GGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLY 696

Query:   578 QGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLD 637
                 L+ + G+DLS N+L G+IP  +G+L R++ LNLS N+L+G+IP +FS L +  +LD
Sbjct:   697 MRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLD 756

Query:   638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697
             LS+NKL+G IP QL  L + VVF+ + NNLSG IP+   QF TF E SY GN  LCG P 
Sbjct:   757 LSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQ-GKQFNTFGEKSYLGNFLLCGSPT 815

Query:   698 PICRSPATMPEASTNNEGDDN-LIDTGNFFITFTXXXXXXXXXXXXVLYVNPYWRRRWFY 756
                    T+       + D++ L+D    + +               L  +  WRR WF 
Sbjct:   816 KRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFC 875

Query:   757 LVEMWI 762
             LV+ +I
Sbjct:   876 LVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 158/536 (29%), Positives = 243/536 (45%)

Query:   253 SNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGP 312
             S+NHF+  I P  +     L++    +N ++ ++       +  + L+ L LS+    G 
Sbjct:   561 SSNHFQGTI-PSSIGEMKSLQVLDMSSNGLYGQLPIM--FLSGCYSLRVLKLSNNQLQGK 617

Query:   313 FRLPIHSHKS-LRLLDVSNNNFQGCIPVEIGDILPS--LSCFNISMNALDGSIPSSFEGH 369
                  H++ + L  L +  NNF G +  E G +L S  L+  +IS N   G +P  + G 
Sbjct:   618 I-FSKHANLTGLVGLFLDGNNFTGSL--EEG-LLKSKNLTLLDISDNRFSGMLPL-WIGR 672

Query:   370 MFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQ 429
                    ++ + +L +  N   G  P  L +              SG IP+ + N   L+
Sbjct:   673 -------ISRLSYLYMSGNQLKGPFP-FLRQSPWVEVMDISHNSFSGSIPRNV-NFPSLR 723

Query:   430 HIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
              + +  N   G +P    +   L++LD+ +NN SG +     L +I+Q    S L  L+L
Sbjct:   724 ELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKI-----LNTIDQT---SKLRILLL 775

Query:   490 AHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYNNNS-SLDKPFEIS 548
              +N+ +  +P                    G IP  F   +     N+ + SL   F+ S
Sbjct:   776 RNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFS 835

Query:   549 F----------DFRNTEKKV----EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK 594
             +             N +  V    + K   + +F TKS    YQG +L  + G+DLS N+
Sbjct:   836 YITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNE 895

Query:   595 LIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654
             L G IP  IG+L  I+ LNLS N LTG+IP + SKL+   +LDLS NKL+G IP  L +L
Sbjct:   896 LSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADL 955

Query:   655 NAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP---ICRSPATMPEAST 711
             N+    + + NNLSG+IP       TF+E SY GN  LCGLP     I +     P  ST
Sbjct:   956 NSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVST 1014

Query:   712 N-----NEGDDNLIDTGNFFITFTXXXXXXXXXXXXVLYVNPYWRRRWFYLVEMWI 762
             +     NE + N+ID   F+ T               LY++  W R WFY V++ +
Sbjct:  1015 HAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
 Identities = 111/379 (29%), Positives = 174/379 (45%)

Query:    97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNXXXXXXXXXXXXXXXX 156
             +L+ L++S N I+G V+        V+R  NL+  D+S N+F+                 
Sbjct:   201 ELKHLAISGNKISGDVD--------VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 252

Query:   157 XXYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT 216
                N+L G    +   +   L++L++  N+    + P   P  KSL++L ++        
Sbjct:   253 SG-NKLSGDFS-RAISTCTELKLLNISSNQFVGPIPP--LP-LKSLQYLSLAENKFTGEI 307

Query:   217 -NFLQIIGESMPSLKHLSLSNF----SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR 271
              +FL    +++  L  LS ++F     P   S +L + L LS+N+F   +  D L     
Sbjct:   308 PDFLSGACDTLTGLD-LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 366

Query:   272 LKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF--RLPIHSHKSLRLLDVS 329
             LK+     NE   E+ ES  LT  +  L +L LSS    GP    L  +   +L+ L + 
Sbjct:   367 LKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 424

Query:   330 NNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENH 389
             NN F G IP  + +    +S  ++S N L G+IPSS  G       +L+ +R L L  N 
Sbjct:   425 NNGFTGKIPPTLSNCSELVS-LHLSFNYLSGTIPSSL-G-------SLSKLRDLKLWLNM 475

Query:   390 FVGEIPQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQL 449
               GEIPQ L                +G+IP  L N T L  I +  N L G IP    +L
Sbjct:   476 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 535

Query:   450 DWLQILDISDNNISGSLPS 468
             + L IL +S+N+ SG++P+
Sbjct:   536 ENLAILKLSNNSFSGNIPA 554

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
 Identities = 132/487 (27%), Positives = 214/487 (43%)

Query:    20 CLDHERFALLQLKHFFN----DPVNYLHDWVDA-KGATDCCQWANVECNNTTGRVIQLYL 74
             CL  +R ALL+ K+ F     DP        +  +  TDCC W  V C+  TG+V++L L
Sbjct:    34 CLPDQRDALLEFKNEFYVQEFDPHMKCEKATETWRNKTDCCSWNRVSCDPKTGKVVELDL 93

Query:    75 -SNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLN--NLKMF 131
              S+  +  L     N+ LF   Q L+SL LS+NNI+G + +   + + +  L+     +F
Sbjct:    94 MSSCLNGPLRS---NSSLFR-LQHLQSLELSSNNISGILPDSIGNLKYLRSLSFRTCHLF 149

Query:   132 DLSGNSFNNXXXXXXXXXXXXXXXXXXYN---RLEGSIDVK-EFDSFNNLEVLDMKRNEI 187
                 +S  +                   +    L    D++    + +++  +D+  N++
Sbjct:   150 GKIPSSLGSLSYLTHLDLSYNDFTSEGPDSGGNLNRLTDLQLVLLNLSSVTWIDLGSNQL 209

Query:   188 DN--LVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIG--ESMPSLKHLSLSNFSPSNDS 243
                 +V    F H KSL  LD+SY    LNT  +  +     + SL  L LS  +    S
Sbjct:   210 KGRGIVDFSIFLHLKSLCSLDLSY----LNTRSMVDLSFFSHLMSLDELDLSGINLKISS 265

Query:   244 WTLN-----QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298
              TL+       L L++ +  I   P  L N + L       N I  ++ E      PT  
Sbjct:   266 -TLSFPSATGTLILASCN--IVEFPKFLENQTSLFYLDISANHIEGQVPE-WLWRLPTLS 321

Query:   299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNAL 358
               +++ +S  G+ P  LP     S+     S+N F G IP  + +++ SL+   +S N  
Sbjct:   322 FVNIAQNSFSGELPM-LP----NSIYSFIASDNQFSGEIPRTVCELV-SLNTLVLSNNKF 375

Query:   359 DGSIPSSFEGH-----MFSKNFNLTNV--RWLLLE--------ENHFVGEIPQSLSKCFX 403
              GSIP  FE       +  +N +L+ V  + ++ E         N   G++P+SL KC  
Sbjct:   376 SGSIPRCFENFKTISILHLRNNSLSGVFPKEIISETLTSLDVGHNWLSGQLPKSLIKCTD 435

Query:   404 XXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPI-PVE-FCQLDWLQILDISDNN 461
                        + K P WL +L+ LQ +++  N   GPI  +E       L+I DIS+N+
Sbjct:   436 LEFLNVEDNRINDKFPFWLRSLSNLQILVLRSNEFYGPIFSLEDSLSFPKLRIFDISENH 495

Query:   462 ISGSLPS 468
              +G LPS
Sbjct:   496 FTGVLPS 502

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 200/759 (26%), Positives = 315/759 (41%)

Query:     3 IMFVLLLIIFEGGWS--EGCLDHERFALLQLKHFF-NDPVNYLHDWVDAKGATDCCQWAN 59
             I F+ LL       S  +  L  +  +LL  K    +DP N L +W   K     CQ++ 
Sbjct:    16 ISFIFLLTHLSQSSSSDQSSLKTDSLSLLSFKTMIQDDPNNILSNWSPRKSP---CQFSG 72

Query:    60 VECN-------NTTGR----VIQLY----LSNTRSMELEE--WYLNA--YLFTPFQQLES 100
             V C        N +G     ++       L +   ++L E  + LN+   L  P   L  
Sbjct:    73 VTCLGGRVTEINLSGSGLSGIVSFNAFTSLDSLSVLKLSENFFVLNSTSLLLLPLT-LTH 131

Query:   101 LSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNXX-XXXXXXXXXXXXXXXXY 159
             L LS++ + G +     S     + +NL    LS N+F                     Y
Sbjct:   132 LELSSSGLIGTLPENFFS-----KYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSY 186

Query:   160 NRLEGSID--VKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHI--ALN 215
             N + G I        S  ++  LD   N I   +      +  +L+ L++SY +    + 
Sbjct:   187 NNITGPISGLTIPLSSCVSMTYLDFSGNSISGYI-SDSLINCTNLKSLNLSYNNFDGQIP 245

Query:   216 TNFLQI-IGESMPSLKHLSLSNFSPSN--DSWTLNQVLWLSNNHFRIPISPDPLFNHSRL 272
              +F ++ + +S+  L H  L+ + P    D+    Q L LS N+F   + P+ L + S L
Sbjct:   246 KSFGELKLLQSL-DLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFT-GVIPESLSSCSWL 303

Query:   273 KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNN 332
             +     NN I      +   +  + Q+  L LS+    G F   I + KSLR+ D S+N 
Sbjct:   304 QSLDLSNNNISGPFPNTILRSFGSLQI--LLLSNNLISGDFPTSISACKSLRIADFSSNR 361

Query:   333 FQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG 392
             F G IP ++     SL    +  N + G IP +            + +R + L  N+  G
Sbjct:   362 FSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAIS--------QCSELRTIDLSLNYLNG 413

Query:   393 EIPQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
              IP  +                +G+IP  +G L  L+ +I+  N L G IP EF     +
Sbjct:   414 TIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNI 473

Query:   453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVXXXXXXXXXXXX 512
             + +  + N ++G +P  F +LS         L+ L L +NN  GE+P             
Sbjct:   474 EWVSFTSNRLTGEVPKDFGILS--------RLAVLQLGNNNFTGEIPPELGKCTTLVWLD 525

Query:   513 XXXXXXHGLIPPFFY----NTALHESYNNNSSLDKPFEISFDFRNTEKKVEK---KSHEI 565
                    G IPP       + AL    + N+ +     +    +     VE    +   +
Sbjct:   526 LNTNHLTGEIPPRLGRQPGSKALSGLLSGNT-MAFVRNVGNSCKGVGGLVEFSGIRPERL 584

Query:   566 FEFTT-KSNAYT--YQGRVLSLLSG------IDLSCNKLIGHIPPPIGNLTRIQILNLSH 616
              +  + KS  +T  Y G +LSL +       +DLS N+L G IP  IG +  +Q+L LSH
Sbjct:   585 LQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSH 644

Query:   617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA 676
             N L+G IP T  +L+     D S N+L G+IP     L+  V    + N L+G IP+   
Sbjct:   645 NQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RG 703

Query:   677 QFATFNESSYKGNPFLCGLPLPICRSPATMPEASTNNEG 715
             Q +T   + Y  NP LCG+PLP C++      A T  EG
Sbjct:   704 QLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTE-EG 741

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
 Identities = 178/662 (26%), Positives = 288/662 (43%)

Query:    59 NVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGAS 118
             ++  NN  G  I   LSN  S+E    + N        QL SL    +   G  E  G  
Sbjct:   101 DLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI 159

Query:   119 SREVTRLNNLKMFDLSGNSFNNXXXXXXXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLE 178
                +  L NL+M  L+                         N LEG I   E  + ++L 
Sbjct:   160 PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPA-ELGNCSDLT 218

Query:   179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSL-SN- 236
             V     N + N  +P      ++LE L++  A+ +L       +GE M  L++LSL +N 
Sbjct:   219 VFTAAENML-NGTIPAELGRLENLEILNL--ANNSLTGEIPSQLGE-MSQLQYLSLMANQ 274

Query:   237 ---FSPSN--DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHS 291
                  P +  D   L Q L LS N+    I P+  +N S+L      NN +   + +S  
Sbjct:   275 LQGLIPKSLADLGNL-QTLDLSANNLTGEI-PEEFWNMSQLLDLVLANNHLSGSLPKS-- 330

Query:   292 LTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCF 351
             + +    L+ L LS     G   + +   +SL+ LD+SNN+  G IP  + +++  L+  
Sbjct:   331 ICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELV-ELTDL 389

Query:   352 NISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXX 411
              +  N L+G++  S          NLTN++WL+L  N+  G++P+ +S            
Sbjct:   390 YLHNNTLEGTLSPSIS--------NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYE 441

Query:   412 XXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF- 470
                SG+IPQ +GN T L+ I M  NH EG IP    +L  L +L +  N + G LP+   
Sbjct:   442 NRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLG 501

Query:   471 --HLLSI-----EQING--------LSGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXX 515
               H L+I      Q++G        L GL  L+L +N+L+G +P                
Sbjct:   502 NCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSH 561

Query:   516 XXXHGLIPPFFYNTALHESYN-NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
                +G I P   +++ + S++  N+  +   EI  +  N++  +++      + T K   
Sbjct:   562 NRLNGTIHPLCGSSS-YLSFDVTNNGFED--EIPLELGNSQN-LDRLRLGKNQLTGKI-P 616

Query:   575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYR 634
             +T  G++  L S +D+S N L G IP  +    ++  ++L++N L+G IP    KL    
Sbjct:   617 WTL-GKIREL-SLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLG 674

Query:   635 NLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG 694
              L LS N+    +P +L      +V S   N+L+G IP+        N  +   N F   
Sbjct:   675 ELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGS 734

Query:   695 LP 696
             LP
Sbjct:   735 LP 736

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181274 hypothetical protein (876 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	782
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-26
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (486), Expect = 1e-50
 Identities = 215/727 (29%), Positives = 311/727 (42%), Gaps = 144/727 (19%)

Query: 1   MVIMFVLLLIIFEGGWSEGCLDHERFALL-QLKHFFNDPVNYLHDWVDAKGATDCCQWAN 59
           ++ M   L + F        L  E   LL   K   NDP+ YL +W     + D C W  
Sbjct: 12  LIFMLFFLFLNF------SMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQG 62

Query: 60  VECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASS 119
           + CNN                                ++ S+ LS  NI+G +      S
Sbjct: 63  ITCNN------------------------------SSRVVSIDLSGKNISGKI------S 86

Query: 120 REVTRLNNLKMFDLSGNSFNNSILSSLTRLS-SVRSLKLSYNRLEGSIDVKEFDSFNNLE 178
             + RL  ++  +LS N  +  I   +   S S+R L LS N   GSI      S  NLE
Sbjct: 87  SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI---PRGSIPNLE 143

Query: 179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS 238
            LD+  N +    +P     F SL+ LD       L  N L  +G+   SL +L      
Sbjct: 144 TLDLSNNMLSG-EIPNDIGSFSSLKVLD-------LGGNVL--VGKIPNSLTNL------ 187

Query: 239 PSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLK-IFHAYNN---EIHAEITESHSLTA 294
                 T  + L L++N     I P  L     LK I+  YNN   EI  EI    SL  
Sbjct: 188 ------TSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 295 PTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS 354
                 +L+       GP    + + K+L+ L +  N   G IP  I   L  L   ++S
Sbjct: 241 LDLVYNNLT-------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLS 292

Query: 355 MNALDGSIP------SSFE-GHMFSKNF---------NLTNVRWLLLEENHFVGEIPQSL 398
            N+L G IP       + E  H+FS NF         +L  ++ L L  N F GEIP++L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458
            K   L  L L+ NNL+G+IP+ L +   L  +I+  N LEG IP        L+ + + 
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL 518
           DN+ SG LPS F  L +        +  L +++NNL+G +  +   +  LQ+L L+ N  
Sbjct: 413 DNSFSGELPSEFTKLPL--------VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 519 HGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ 578
            G +P  F +  L        +LD                   S   F     S A   +
Sbjct: 465 FGGLPDSFGSKRL-------ENLD------------------LSRNQF-----SGAVPRK 494

Query: 579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638
              LS L  + LS NKL G IP  + +  ++  L+LSHN L+G IP++FS++     LDL
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 639 SYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG---- 694
           S N+L+G+IP+ L  + + V  + + N+L G +P  T  F   N S+  GN  LCG    
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGDTT 613

Query: 695 LPLPICR 701
             LP C+
Sbjct: 614 SGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (286), Expect = 7e-26
 Identities = 96/306 (31%), Positives = 137/306 (44%), Gaps = 50/306 (16%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 462
           +  + L+  N+SGKI   +  L  +Q I +  N L GPIP + F     L+ L++S+NN 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI 522
           +GS+P             +  L  L L++N L GE+P  +   + L++LDL  N L G I
Sbjct: 131 TGSIPRGS----------IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 523 PPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ---- 578
           P          S  N +SL+                          T  SN    Q    
Sbjct: 181 PN---------SLTNLTSLEF------------------------LTLASNQLVGQIPRE 207

Query: 579 -GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLD 637
            G++ SL   I L  N L G IP  IG LT +  L+L +NNLTG IPS+   L+  + L 
Sbjct: 208 LGQMKSL-KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697
           L  NKL+G IP  +  L   +    + N+LSG+IPEL  Q           N F   +P+
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 698 PICRSP 703
            +   P
Sbjct: 327 ALTSLP 332

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 5e-15
 Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
            + G+ L    L G IP  I  L  +Q +NLS N++ G IP +   + +   LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 644 NGKIPRQLVELNAFVVFSFACNNLSGKIPE----LTAQFATFNESSYKGNPFLCGLP-LP 698
           NG IP  L +L +  + +   N+LSG++P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 699 IC 700
            C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 6e-10
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 465
           GL L+N  L G IP  +  L  LQ I +  N + G IP     +  L++LD+S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 466 LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL 505
           +P        E +  L+ L  L L  N+L G VP  L G 
Sbjct: 482 IP--------ESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 7e-10
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 375 FNLTNVRWLL----LEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQH 430
           F+ T  +W +    L+     G IP  +SK   L+ + L+ N++ G IP  LG++T L+ 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 468
           + +  N   G IP    QL  L+IL+++ N++SG +P+
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
           L + N   +G IP +I   L  L   N+S N++ G+IP S          ++T++  L L
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLG--------SITSLEVLDL 473

Query: 386 EENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLG 423
             N F G IP+SL +   L+ L LN N+LSG++P  LG
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 438 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE 497
           L G IP +  +L  LQ +++S N+I G++P             ++ L  L L++N+  G 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--------GSITSLEVLDLSYNSFNGS 481

Query: 498 VPVQLCGLNQLQLLDLSDNNLHGLIP 523
           +P  L  L  L++L+L+ N+L G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
           + L+ +++S N+ +G IP  +G I  SL   ++S N+ +GSIP S           LT++
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLG--------QLTSL 492

Query: 381 RWLLLEENHFVGEIPQSL 398
           R L L  N   G +P +L
Sbjct: 493 RILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 53/142 (37%)

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK 543
           +  L L +  L G +P  +  L  LQ ++LS N++ G IPP                   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------- 462

Query: 544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI 603
                                              G + SL   +DLS N   G IP  +
Sbjct: 463 -----------------------------------GSITSLEV-LDLSYNSFNGSIPESL 486

Query: 604 GNLTRIQILNLSHNNLTGTIPS 625
           G LT ++ILNL+ N+L+G +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
            + L+S++LS N+I       G     +  + +L++ DLS NSFN SI  SL +L+S+R 
Sbjct: 441 LRHLQSINLSGNSI------RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 155 LKLSYNRLEGSI 166
           L L+ N L G +
Sbjct: 495 LNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
           L+ LD+S+N ++      F         GL  L  L L+ NNL    P    GL  L+ L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFK--------GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Query: 512 DLSDNNL 518
           DLS NNL
Sbjct: 54  DLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 21 LDHERFALLQLK-HFFNDPVNYLHDWVDAKGATDCCQWANVECN 63
          L+ +R ALL  K     DP   L  W  +  ++D C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 588 IDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           +DLS N+L   IP      L  +++L+LS NNLT   P  FS L + R+LDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 298 QLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNA 357
            L+S++LS     G     + S  SL +LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 358 LDGSIPSSFEGHMFSK-NFNLTN 379
           L G +P++  G +  + +FN T+
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 447 CQLD-----W-LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV 500
           CQ D     W +  L + +  + G +P+         I+ L  L  + L+ N++ G +P 
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPN--------DISKLRHLQSINLSGNSIRGNIPP 460

Query: 501 QLCGLNQLQLLDLSDNNLHGLIP 523
            L  +  L++LDLS N+ +G IP
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 76/262 (29%), Positives = 110/262 (41%), Gaps = 51/262 (19%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           +  ++L     L  L LN N L   I + L  LT L  + +  N++    P+       L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
           + LD+SDN I  SLPS         +  L  L +L L+ N+L  ++P  L  L+ L  LD
Sbjct: 143 KELDLSDNKIE-SLPSP--------LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192

Query: 513 LSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFT 569
           LS N +  L P     +AL E   S N+   L                            
Sbjct: 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL------------------------ 228

Query: 570 TKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSK 629
                       L  LSG++LS NKL   +P  IGNL+ ++ L+LS+N ++    S+   
Sbjct: 229 ----------SNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGS 275

Query: 630 LEAYRNLDLSYNKLNGKIPRQL 651
           L   R LDLS N L+  +P   
Sbjct: 276 LTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 49/221 (22%), Positives = 76/221 (34%), Gaps = 64/221 (28%)

Query: 93  TPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSF---NNSILSSLTRL 149
            P   L+ L LS N          +  + +T+   L+  DLS N+       +L SL R 
Sbjct: 48  RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS 107

Query: 150 SSVRSLKLSYNRLEGSI-------------DVKEFDSFNN-------------------L 177
           SS++ LKL+ N L                  +++     N                   L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167

Query: 178 EVLDMKRNEIDNLVVP---QGFPHFKSLEHLDMSYAHIALNTNFL-----QIIGESMPSL 229
           + L++  N I +  +    +G     +LE LD       LN N L       + E++ SL
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLD-------LNNNGLTDEGASALAETLASL 220

Query: 230 KHLSLSNFSPSN-DSW----------TLNQ---VLWLSNNH 256
           K L + N   +N              + N     L LS N 
Sbjct: 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 121 EVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSI 166
           ++++L +L+  +LSGNS   +I  SL  ++S+  L LSYN   GSI
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	782
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.95
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG4341	483	consensus F-box protein containing LRR [General fu	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.2
KOG4341	483	consensus F-box protein containing LRR [General fu	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG4308	478	consensus LRR-containing protein [Function unknown	92.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.26
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.93
smart00370	26	LRR Leucine-rich repeats, outliers.	91.93
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.71
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	89.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.47
smart00370	26	LRR Leucine-rich repeats, outliers.	88.47
KOG4308	478	consensus LRR-containing protein [Function unknown	87.93
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.38

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.9e-73  Score=689.28  Aligned_cols=579  Identities=33%  Similarity=0.512  Sum_probs=525.5

Q ss_pred             cHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCE
Q 044724           21 LDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLES  100 (782)
Q Consensus        21 ~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~  100 (782)
                      .++|++||++||+++.+|.+.+++|..   +++||.|.||+|++ .++|+.|+|+++.+.  |.   .+..|..+++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~--~~---~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNIS--GK---ISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCcc--cc---CChHHhCCCCCCE
Confidence            578999999999999888888899975   67899999999985 679999999998763  22   1456889999999


Q ss_pred             EeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEE
Q 044724          101 LSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL  180 (782)
Q Consensus       101 L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  180 (782)
                      |+|++|++++.+|..     .+.++++|++|+|++|++++.+|.  +.+++|++|+|++|.+.+.+|. .++++++|++|
T Consensus        98 L~Ls~n~~~~~ip~~-----~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L  169 (968)
T PLN00113         98 INLSNNQLSGPIPDD-----IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVL  169 (968)
T ss_pred             EECCCCccCCcCChH-----HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEE
Confidence            999999999887764     255899999999999999988775  5689999999999999988886 89999999999


Q ss_pred             EcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC-CCCCCCCCeEEccC
Q 044724          181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS-NDSWTLNQVLWLSN  254 (782)
Q Consensus       181 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~-~~~l~~L~~L~Ls~  254 (782)
                      ++++|.+.+.. |..+.++++|++|++++  |.+.+.+|..+.. +++|++|++++     .+|. ++.+++|++|++++
T Consensus       170 ~L~~n~l~~~~-p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        170 DLGGNVLVGKI-PNSLTNLTSLEFLTLAS--NQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             ECccCcccccC-ChhhhhCcCCCeeeccC--CCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            99999998875 88999999999999999  7788889999998 99999999987     4566 88999999999999


Q ss_pred             ceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCC
Q 044724          255 NHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ  334 (782)
Q Consensus       255 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~  334 (782)
                      |.+++.+|. .+.++++|++|++++|.+.+..+..   .....+|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       246 n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        246 NNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             ceeccccCh-hHhCCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            999987775 4899999999999999998764432   345578999999999999999988999999999999999999


Q ss_pred             ccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcc
Q 044724          335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL  414 (782)
Q Consensus       335 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  414 (782)
                      +.+|..+.. +++|+.|++++|.+++.+|..+.        .+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus       322 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~--------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  392 (968)
T PLN00113        322 GKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLG--------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL  392 (968)
T ss_pred             CcCChhHhc-CCCCCEEECcCCCCcCcCChHHh--------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence            999988877 89999999999999988887776        789999999999999999999999999999999999999


Q ss_pred             cccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcc
Q 044724          415 SGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL  494 (782)
Q Consensus       415 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l  494 (782)
                      .+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|++++.+|        ..+..+++|++|++++|++
T Consensus       393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN--------SRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC--------hhhccCCCCcEEECcCcee
Confidence            99999999999999999999999999999999999999999999999999888        5567889999999999999


Q ss_pred             eeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCe
Q 044724          495 EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA  574 (782)
Q Consensus       495 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (782)
                      .+.+|..+ ..++|+.|++++|++++.+|..+..                                              
T Consensus       465 ~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----------------------------------------------  497 (968)
T PLN00113        465 FGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----------------------------------------------  497 (968)
T ss_pred             eeecCccc-ccccceEEECcCCccCCccChhhhh----------------------------------------------
Confidence            98888766 4689999999999999988876654                                              


Q ss_pred             eeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcC
Q 044724          575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL  654 (782)
Q Consensus       575 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  654 (782)
                             +++|+.|+|++|++++.+|..++.+++|++|+|++|.++|.+|..|+++++|++|||++|+++|.+|..+..+
T Consensus       498 -------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        498 -------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             -------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence                   5579999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          655 NAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       655 ~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ++|+++++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus       571 ~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        571 ESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            9999999999999999999 7899999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-59  Score=570.10  Aligned_cols=513  Identities=30%  Similarity=0.440  Sum_probs=464.6

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcC-CCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLT-RLSSVRSLKLSYNRLEGSIDVKEFDSF  174 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l  174 (782)
                      .+++.|||++|.+++.++..      |..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|.   +.+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~------~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSA------IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSI  139 (968)
T ss_pred             CcEEEEEecCCCccccCChH------HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---ccc
Confidence            47899999999999887653      89999999999999999988887654 999999999999999988875   568


Q ss_pred             CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC-CCCCCCCC
Q 044724          175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS-NDSWTLNQ  248 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~-~~~l~~L~  248 (782)
                      ++|++|+|++|.+++.. |..++++++|++|++++  |.+.+.+|..+.+ +++|++|++++     .+|. ++.+++|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~--n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        140 PNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGG--NVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             CCCCEEECcCCcccccC-ChHHhcCCCCCEEECcc--CcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            99999999999998775 88999999999999999  7788889999988 99999999987     3565 88999999


Q ss_pred             eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 044724          249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDV  328 (782)
Q Consensus       249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L  328 (782)
                      .|++++|.+++.+|. .++++++|++|++++|.+.+..+..   +....+|++|++++|.+.+..|..+..+++|++|++
T Consensus       216 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        216 WIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSS---LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             EEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChh---HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence            999999999987775 4899999999999999988765432   345568999999999999888888889999999999


Q ss_pred             cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 044724          329 SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLY  408 (782)
Q Consensus       329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  408 (782)
                      ++|.+.+.+|..+.. +++|+.|++++|.+++..|..+.        .+++|+.|++++|.+++.+|..++.+++|+.|+
T Consensus       292 s~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~  362 (968)
T PLN00113        292 SDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALT--------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD  362 (968)
T ss_pred             cCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHh--------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence            999999889988876 89999999999999988887776        789999999999999999999999999999999


Q ss_pred             CcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEE
Q 044724          409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLI  488 (782)
Q Consensus       409 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~  488 (782)
                      +++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|        ..+..+++|+.|+
T Consensus       363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~  434 (968)
T PLN00113        363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP--------SEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC--------hhHhcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999888        5678899999999


Q ss_pred             cCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724          489 LAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF  568 (782)
Q Consensus       489 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (782)
                      +++|++++.+|..+..+++|+.|++++|++.+.+|..+.                                         
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----------------------------------------  473 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----------------------------------------  473 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-----------------------------------------
Confidence            999999999998888999999999999999888776442                                         


Q ss_pred             EecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCc
Q 044724          569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP  648 (782)
Q Consensus       569 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  648 (782)
                                   .++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|
T Consensus       474 -------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        474 -------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             -------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence                         2468999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          649 RQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       649 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ..+..+++|+.|++++|+++|.+|..+..+..++.+++.+|++.+..|
T Consensus       541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999988889999999999999887544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-40  Score=339.64  Aligned_cols=282  Identities=23%  Similarity=0.265  Sum_probs=229.7

Q ss_pred             CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724          346 PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL  425 (782)
Q Consensus       346 ~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  425 (782)
                      .++++|+|++|.++......|.        ++.+|.+|.|+.|+++...+..|.++++|+.|+|..|+|.-.---.|.++
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~--------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFD--------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CCceEEeecccccccccccccc--------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            4555555666655555555555        56677778888888877667777778888888888888864435567888


Q ss_pred             CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724          426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL  505 (782)
Q Consensus       426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  505 (782)
                      ++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-.        .|+.++++|+.|+|++|.|..+.++++..+
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--------ccccccchhhhhccchhhhheeecchhhhc
Confidence            888888888888887777888888888888888888874333        577888999999999999988888888888


Q ss_pred             CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724          506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL  585 (782)
Q Consensus       506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  585 (782)
                      ++|+.|||++|+++...+..|..                                                     ++.|
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~L  343 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQL  343 (873)
T ss_pred             ccceeEeccccccccCChhHHHH-----------------------------------------------------HHHh
Confidence            99999999999998666655532                                                     6678


Q ss_pred             ceeeccCCccCccCCcccccccccceeecccccccccCCc---cccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS---TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      +.|.|++|.++..-..+|..+++|++|||++|.|++.|.+   .|.+|++|+.|+|.+|+|..+.-.+|..+..|+.|||
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence            8999999999877778899999999999999999987765   4788999999999999999666678999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      .+|.+-..-|..+.++ .++++-+..-.++|+|.+
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            9999999889888888 888888888899999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.9e-40  Score=328.34  Aligned_cols=469  Identities=25%  Similarity=0.331  Sum_probs=319.1

Q ss_pred             EEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCC
Q 044724           69 VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTR  148 (782)
Q Consensus        69 V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  148 (782)
                      ...+.++++.+....      ..+.++..|.+|++++|+++...|.       ++.+..++.|+.++|+++ .+|+.++.
T Consensus        47 l~~lils~N~l~~l~------~dl~nL~~l~vl~~~~n~l~~lp~a-------ig~l~~l~~l~vs~n~ls-~lp~~i~s  112 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLR------EDLKNLACLTVLNVHDNKLSQLPAA-------IGELEALKSLNVSHNKLS-ELPEQIGS  112 (565)
T ss_pred             hhhhhhccCchhhcc------HhhhcccceeEEEeccchhhhCCHH-------HHHHHHHHHhhcccchHh-hccHHHhh
Confidence            445667776653221      2356788889999999998765553       888889999999999988 68888999


Q ss_pred             CCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCC
Q 044724          149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS  228 (782)
Q Consensus       149 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~  228 (782)
                      +.+|+.|+.++|.+. .+|+ .++.+-.|+.++..+|+++..  |+++.++.+|..|++.+  +.+... |+...+ ++.
T Consensus       113 ~~~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~--n~l~~l-~~~~i~-m~~  184 (565)
T KOG0472|consen  113 LISLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEG--NKLKAL-PENHIA-MKR  184 (565)
T ss_pred             hhhhhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccc--cchhhC-CHHHHH-HHH
Confidence            999999999999988 7776 788889999999999999887  78888899999999998  554433 334444 778


Q ss_pred             CCeEeCCC----CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEE
Q 044724          229 LKHLSLSN----FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS  303 (782)
Q Consensus       229 L~~L~L~~----~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~  303 (782)
                      |++||...    .+|. ++.+.+|+.|+|..|++. .+|  .|..|+.|+++++..|.+.-.+.                
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa----------------  245 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA----------------  245 (565)
T ss_pred             HHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH----------------
Confidence            88887765    5666 777788888888888776 455  37777777777777777653211                


Q ss_pred             ccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEE
Q 044724          304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL  383 (782)
Q Consensus       304 l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L  383 (782)
                                 ....+++++..||+.+|+++ ++|+++.. +.+|++||+|+|.+++ .|.+++        ++ .|+.|
T Consensus       246 -----------e~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLg--------nl-hL~~L  302 (565)
T KOG0472|consen  246 -----------EHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLG--------NL-HLKFL  302 (565)
T ss_pred             -----------HHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccc--------cc-eeeeh
Confidence                       11235678888888888888 88888876 7888888888888874 444454        67 78888


Q ss_pred             EccCccccccCCccccCC--CCCcEEE-------CcCCcc----ccc-CCc---cccCcCCCCEEeCCCCccccCCChhc
Q 044724          384 LLEENHFVGEIPQSLSKC--FLLKGLY-------LNNNNL----SGK-IPQ---WLGNLTGLQHIIMPKNHLEGPIPVEF  446 (782)
Q Consensus       384 ~L~~n~l~~~~~~~l~~l--~~L~~L~-------Ls~N~l----~~~-~p~---~~~~l~~L~~L~L~~N~l~~~~~~~~  446 (782)
                      .+.+|.+..+-.+.+..-  .-|++|.       ++...=    .+. .+.   ......+.+.|++++-+++ .+|...
T Consensus       303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEV  381 (565)
T KOG0472|consen  303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEV  381 (565)
T ss_pred             hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHH
Confidence            888887764322111110  0012111       111000    000 011   1223445667777777776 344444


Q ss_pred             cCCCC---CceEeccCCcceeeCCCCccccchhhhcCCCCC-CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcC
Q 044724          447 CQLDW---LQILDISDNNISGSLPSCFHLLSIEQINGLSGL-SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI  522 (782)
Q Consensus       447 ~~l~~---L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  522 (782)
                      .....   ....+++.|++. .+|.        .+..+..+ +.+.+++|.+. .+|..++.+++|..|+|++|.+. .+
T Consensus       382 fea~~~~~Vt~VnfskNqL~-elPk--------~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  382 FEAAKSEIVTSVNFSKNQLC-ELPK--------RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             HHHhhhcceEEEecccchHh-hhhh--------hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hc
Confidence            33333   667777777776 5662        33333333 23445555554 67777777777888888777765 34


Q ss_pred             CcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcc
Q 044724          523 PPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP  602 (782)
Q Consensus       523 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  602 (782)
                      |..++.                                                     +..|+.||+|.|+|. .+|..
T Consensus       451 P~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~  476 (565)
T KOG0472|consen  451 PEEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPEC  476 (565)
T ss_pred             chhhhh-----------------------------------------------------hhhhheecccccccc-cchHH
Confidence            444432                                                     335777788888776 67777


Q ss_pred             cccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724          603 IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       603 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  668 (782)
                      +..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .||+.++++++|++|++++|++.
T Consensus       477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            777777777777777777666666777888888888888777 67777788888888888888776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-37  Score=318.93  Aligned_cols=369  Identities=23%  Similarity=0.280  Sum_probs=286.7

Q ss_pred             CcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEec
Q 044724          128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDM  207 (782)
Q Consensus       128 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  207 (782)
                      -+.||+++|.++.+-+..|.++++|+.+++..|.++ .||. .-....+|+.|+|.+|.|+.+. .+.+..++.|+.|||
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeecccccccc-HHHHHhHhhhhhhhh
Confidence            456888888888777777888888888888888887 7774 3333445888888888777664 455555555555555


Q ss_pred             ccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceecc
Q 044724          208 SYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEIT  287 (782)
Q Consensus       208 ~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  287 (782)
                      |.                                             |.++ .++...|..-.++++|+|++|.|+..  
T Consensus       157 Sr---------------------------------------------N~is-~i~~~sfp~~~ni~~L~La~N~It~l--  188 (873)
T KOG4194|consen  157 SR---------------------------------------------NLIS-EIPKPSFPAKVNIKKLNLASNRITTL--  188 (873)
T ss_pred             hh---------------------------------------------chhh-cccCCCCCCCCCceEEeecccccccc--
Confidence            55                                             3322 23333333334455555555554422  


Q ss_pred             ccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCccc
Q 044724          288 ESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE  367 (782)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  367 (782)
                                               ....|.++.+|..|.|+.|+++ .+|...++.+++|+.|+|..|++.-..-..|.
T Consensus       189 -------------------------~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  189 -------------------------ETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             -------------------------ccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence                                     2334556678999999999999 89988888899999999999998755455565


Q ss_pred             ccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhcc
Q 044724          368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC  447 (782)
Q Consensus       368 g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  447 (782)
                              .+++|+.|.+..|.+...-..+|..+.++++|+|+.|+++..-..|+.+++.|++|++++|.|..+-+.++.
T Consensus       243 --------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  243 --------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             --------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence                    589999999999999988888899999999999999999988888999999999999999999999899999


Q ss_pred             CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccc
Q 044724          448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFY  527 (782)
Q Consensus       448 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  527 (782)
                      -+++|++|||++|+++..-+        ..|..+..|++|+|++|.+...-..+|..+++|++|||++|.++..+.+.-.
T Consensus       315 ftqkL~~LdLs~N~i~~l~~--------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDE--------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             hcccceeEeccccccccCCh--------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence            99999999999999995555        6778889999999999999877788899999999999999999866544211


Q ss_pred             cccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccc
Q 044724          528 NTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT  607 (782)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  607 (782)
                                                                      .|.|  +++|+.|+|-+|++..+.-.+|.++.
T Consensus       387 ------------------------------------------------~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~  416 (873)
T KOG4194|consen  387 ------------------------------------------------AFNG--LPSLRKLRLTGNQLKSIPKRAFSGLE  416 (873)
T ss_pred             ------------------------------------------------hhcc--chhhhheeecCceeeecchhhhccCc
Confidence                                                            1112  77888899999999866667889999


Q ss_pred             ccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       608 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                      +|+.|||.+|.|..+.|.+|..+ .|++|-++.
T Consensus       417 ~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  417 ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            99999999999988889999888 888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-39  Score=319.40  Aligned_cols=449  Identities=24%  Similarity=0.348  Sum_probs=350.7

Q ss_pred             EEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCC
Q 044724           69 VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTR  148 (782)
Q Consensus        69 V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  148 (782)
                      .+.++++.+.+...      ++.++.+..++.|+.++|+++...+.       +..+.+|+.|+.++|.+. ..|+.++.
T Consensus        70 l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~-------i~s~~~l~~l~~s~n~~~-el~~~i~~  135 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQ-------IGSLISLVKLDCSSNELK-ELPDSIGR  135 (565)
T ss_pred             eeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHH-------Hhhhhhhhhhhcccccee-ecCchHHH
Confidence            56677777665322      23567889999999999999754443       888999999999999998 57889999


Q ss_pred             CCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCC
Q 044724          149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS  228 (782)
Q Consensus       149 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~  228 (782)
                      +..|..|+..+|+++ .+|+ .+.++.+|..|++.+|++....  ...-+++.|++||...  | .-+.+|+.++. +.+
T Consensus       136 ~~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~--~~~i~m~~L~~ld~~~--N-~L~tlP~~lg~-l~~  207 (565)
T KOG0472|consen  136 LLDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALP--ENHIAMKRLKHLDCNS--N-LLETLPPELGG-LES  207 (565)
T ss_pred             Hhhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCC--HHHHHHHHHHhcccch--h-hhhcCChhhcc-hhh
Confidence            999999999999998 8887 8889999999999999999884  4444599999999987  4 34688999998 999


Q ss_pred             CCeEeCCC----CCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEc
Q 044724          229 LKHLSLSN----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL  304 (782)
Q Consensus       229 L~~L~L~~----~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l  304 (782)
                      |..|++..    .+|+|..+..|..++++.|.+. .+|.+...+++++..|++++|++...+                  
T Consensus       208 L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P------------------  268 (565)
T KOG0472|consen  208 LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP------------------  268 (565)
T ss_pred             hHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc------------------
Confidence            99999987    6788999999999999999997 688887889999999999999987543                  


Q ss_pred             cCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEE
Q 044724          305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL  384 (782)
Q Consensus       305 ~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~  384 (782)
                                ..+.-+.+|++||+|+|.++ .+|..+++ + .|+.|.+.+|.+...-.+.+.+.      .-.-|++|.
T Consensus       269 ----------de~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~g------T~~vLKyLr  329 (565)
T KOG0472|consen  269 ----------DEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKG------TQEVLKYLR  329 (565)
T ss_pred             ----------hHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHccc------HHHHHHHHH
Confidence                      33445678999999999999 79999998 6 99999999998864322211110      000011110


Q ss_pred             -------ccCcc---cc-cc-CC---ccccCCCCCcEEECcCCcccccCCccccCcC---CCCEEeCCCCccccCCChhc
Q 044724          385 -------LEENH---FV-GE-IP---QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT---GLQHIIMPKNHLEGPIPVEF  446 (782)
Q Consensus       385 -------L~~n~---l~-~~-~~---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~~~~~~~  446 (782)
                             ++.-.   -+ +. .+   .......+.+.|++++-+++ .+|+......   -.+..+++.|++. .+|..+
T Consensus       330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L  407 (565)
T KOG0472|consen  330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRL  407 (565)
T ss_pred             HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhh
Confidence                   11100   00 01 11   12234567889999998888 5665443333   3788999999998 678777


Q ss_pred             cCCCCCce-EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724          447 CQLDWLQI-LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF  525 (782)
Q Consensus       447 ~~l~~L~~-L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  525 (782)
                      ..+..+.+ +++++|.++ .+|        ..+..+++|+.|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|.+
T Consensus       408 ~~lkelvT~l~lsnn~is-fv~--------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~  476 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKIS-FVP--------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC  476 (565)
T ss_pred             HHHHHHHHHHHhhcCccc-cch--------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence            77766655 455666554 666        67788999999999999887 78999999999999999999987 56766


Q ss_pred             cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724          526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN  605 (782)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (782)
                      ...                                                     +..++.+-.++|++...-|+.+.+
T Consensus       477 ~y~-----------------------------------------------------lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  477 LYE-----------------------------------------------------LQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             Hhh-----------------------------------------------------HHHHHHHHhccccccccChHHhhh
Confidence            543                                                     234556666778988776777999


Q ss_pred             ccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       606 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                      +.+|..|||.+|.+. .+|..++++++|++|++++|.+.
T Consensus       504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999999999999 89999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-36  Score=325.99  Aligned_cols=439  Identities=27%  Similarity=0.326  Sum_probs=211.9

Q ss_pred             CCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccE
Q 044724          125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH  204 (782)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  204 (782)
                      .-+|+.|||++|.+. ..|..+..+.+|+.|+++.|.+. .+|. ...++.+|++|.|..|.+...  |..+..+++|++
T Consensus        44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL~~n~l~~l--P~~~~~lknl~~  118 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNLKNNRLQSL--PASISELKNLQY  118 (1081)
T ss_pred             eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhheeccchhhcC--chhHHhhhcccc
Confidence            334666666665554 35555555666666666666655 5553 555566666666666655554  555566666666


Q ss_pred             EecccCcccccccchHHHhhcCCCCCeEeCCCC--CCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcc
Q 044724          205 LDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF--SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI  282 (782)
Q Consensus       205 L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~--ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  282 (782)
                      |++++  |.+ +.+|..+.. ++.+..+..+++  +-.++... .+.+++..|.+.+.++.+ ..++..  .+++++|.+
T Consensus       119 LdlS~--N~f-~~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~  190 (1081)
T KOG0618|consen  119 LDLSF--NHF-GPIPLVIEV-LTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEM  190 (1081)
T ss_pred             cccch--hcc-CCCchhHHh-hhHHHHHhhhcchhhhhhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchh
Confidence            66665  221 234444444 444444444432  00011111 455555555555444432 333333  455555554


Q ss_pred             ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccC
Q 044724          283 HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI  362 (782)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~  362 (782)
                      ....      .....+++.+....|.+....    ..-++++.|+.++|.++...+. ..  -.+|++++++.|++++. 
T Consensus       191 ~~~d------ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~-p~--p~nl~~~dis~n~l~~l-  256 (1081)
T KOG0618|consen  191 EVLD------LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH-PV--PLNLQYLDISHNNLSNL-  256 (1081)
T ss_pred             hhhh------hhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc-cc--cccceeeecchhhhhcc-
Confidence            3100      011111222222211111100    0123455555555555411111 11  23555555555555432 


Q ss_pred             CCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCC
Q 044724          363 PSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI  442 (782)
Q Consensus       363 p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  442 (782)
                      |+.+.        .+.+|+.++..+|+++ .+|..+....+|+.|++.+|.+. .+|....+++.|++|+|..|++....
T Consensus       257 p~wi~--------~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  257 PEWIG--------ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             hHHHH--------hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccc
Confidence            23332        4555555555555553 44444555555555555555554 34444455555555555555555322


Q ss_pred             ChhccCCCC-CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724          443 PVEFCQLDW-LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       443 ~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                      +..+.-... |..|+.+.|++. ..|. +      .=...+.|+.|.+.+|.++...-..+.+.+.|+.|+|++|++. .
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~-~lp~-~------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~  397 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLS-TLPS-Y------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S  397 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhcccc-cccc-c------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence            222222222 444555555544 2221 1      1112345566666666666555445556666666666666665 2


Q ss_pred             CCcc-cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC
Q 044724          522 IPPF-FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP  600 (782)
Q Consensus       522 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  600 (782)
                      +|.. +.+                                                     ++.|+.|+||+|+++ .+|
T Consensus       398 fpas~~~k-----------------------------------------------------le~LeeL~LSGNkL~-~Lp  423 (1081)
T KOG0618|consen  398 FPASKLRK-----------------------------------------------------LEELEELNLSGNKLT-TLP  423 (1081)
T ss_pred             CCHHHHhc-----------------------------------------------------hHHhHHHhcccchhh-hhh
Confidence            2322 111                                                     345666666666666 455


Q ss_pred             cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC-CchhhhcCCCCcEEEcccCc
Q 044724          601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK-IPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       601 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~  666 (782)
                      ..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+|+.. +|.... -+.|++||+++|.
T Consensus       424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            66666666666666666665 445 556666666666666666532 222221 2566666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-34  Score=313.87  Aligned_cols=480  Identities=26%  Similarity=0.299  Sum_probs=361.7

Q ss_pred             CEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcC
Q 044724           68 RVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLT  147 (782)
Q Consensus        68 ~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  147 (782)
                      +++.|+++.+.+-.     .+.....+.-+|+.||+++|++... |.      .+..+.+|+.|+++.|.+. ..|.+..
T Consensus        22 ~~~~ln~~~N~~l~-----~pl~~~~~~v~L~~l~lsnn~~~~f-p~------~it~l~~L~~ln~s~n~i~-~vp~s~~   88 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLS-----RPLEFVEKRVKLKSLDLSNNQISSF-PI------QITLLSHLRQLNLSRNYIR-SVPSSCS   88 (1081)
T ss_pred             HHHhhhcccccccc-----CchHHhhheeeeEEeeccccccccC-Cc------hhhhHHHHhhcccchhhHh-hCchhhh
Confidence            47777777664421     1122334444599999999998633 32      2788999999999999988 5778899


Q ss_pred             CCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCC
Q 044724          148 RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMP  227 (782)
Q Consensus       148 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~  227 (782)
                      ++.+|++|+|..|.+. .+|. .+..+.+|++||+++|++...  |..+..++.++.+..++|  ...    ..++. . 
T Consensus        89 ~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N--~~~----~~lg~-~-  156 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNN--EKI----QRLGQ-T-  156 (1081)
T ss_pred             hhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcc--hhh----hhhcc-c-
Confidence            9999999999999998 8887 899999999999999999876  788888899999999984  111    11222 1 


Q ss_pred             CCCeEeCCC-----CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccE
Q 044724          228 SLKHLSLSN-----FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS  301 (782)
Q Consensus       228 ~L~~L~L~~-----~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~  301 (782)
                      .++.+++..     .++. +..++.  .++|.+|.+. ..   .+.++++|+.+....|++...       .....+++.
T Consensus       157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l-------~~~g~~l~~  223 (1081)
T KOG0618|consen  157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL-------EISGPSLTA  223 (1081)
T ss_pred             cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE-------EecCcchhe
Confidence            144444433     4444 555555  6999999876 22   377888999999999888654       234457888


Q ss_pred             EEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCC
Q 044724          302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR  381 (782)
Q Consensus       302 L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~  381 (782)
                      |+.+.|.+....+.+  .-.+|+++|+++|+++ .+|.++.. +.+|+.++..+|.++ .+|..+.        ..++|+
T Consensus       224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~--------~~~~L~  290 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRIS--------RITSLV  290 (1081)
T ss_pred             eeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHh--------hhhhHH
Confidence            999888887433222  3468999999999999 88988887 899999999999995 4555444        688999


Q ss_pred             EEEccCccccccCCccccCCCCCcEEECcCCcccccCCc-cccCcCC-CCEEeCCCCccccCCChhccCCCCCceEeccC
Q 044724          382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ-WLGNLTG-LQHIIMPKNHLEGPIPVEFCQLDWLQILDISD  459 (782)
Q Consensus       382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  459 (782)
                      .|.+..|.+. .+|....+.+.|++|+|..|++. ..|+ .+.-... |+.|+.+.|++.......=...+.|+.|.+.+
T Consensus       291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            9999999998 66777888999999999999998 4454 3333333 77888888887743322222456799999999


Q ss_pred             CcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCC
Q 044724          460 NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS  539 (782)
Q Consensus       460 N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  539 (782)
                      |.+++..-        ..+.+...|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..           
T Consensus       369 N~Ltd~c~--------p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-----------  428 (1081)
T KOG0618|consen  369 NHLTDSCF--------PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-----------  428 (1081)
T ss_pred             Ccccccch--------hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-----------
Confidence            99986533        46778899999999999998555566888999999999999998 55665544           


Q ss_pred             CCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccc
Q 044724          540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL  619 (782)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  619 (782)
                                                                +..|++|..-+|++. ..| .+..++.|+.+|+|.|+|
T Consensus       429 ------------------------------------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  429 ------------------------------------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             ------------------------------------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence                                                      457888999999988 567 899999999999999999


Q ss_pred             ccc-CCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccC
Q 044724          620 TGT-IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN  665 (782)
Q Consensus       620 ~~~-~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  665 (782)
                      +.. +|... .-++|+.|||++|.=....-..|..+.++...++.-|
T Consensus       465 ~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  465 SEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            853 33333 2389999999999743344456677777777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.4e-33  Score=291.40  Aligned_cols=387  Identities=24%  Similarity=0.302  Sum_probs=276.5

Q ss_pred             CCCCcEEeCCCCCCC-CcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc
Q 044724          125 LNNLKMFDLSGNSFN-NSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE  203 (782)
Q Consensus       125 l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  203 (782)
                      |+-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|. .++.+.+|++|.+++|++..+  -..+..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~v--hGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLISV--HGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHhh--hhhhccchhhH
Confidence            455566677777776 356777777777777777777776 6776 777777777777777777665  35666777777


Q ss_pred             EEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccc
Q 044724          204 HLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH  283 (782)
Q Consensus       204 ~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  283 (782)
                      .+++..|+..-+ .+|..+.                   .+..|+.||||+|+++ ++|.                    
T Consensus        82 sv~~R~N~LKns-GiP~diF-------------------~l~dLt~lDLShNqL~-EvP~--------------------  120 (1255)
T KOG0444|consen   82 SVIVRDNNLKNS-GIPTDIF-------------------RLKDLTILDLSHNQLR-EVPT--------------------  120 (1255)
T ss_pred             HHhhhccccccC-CCCchhc-------------------ccccceeeecchhhhh-hcch--------------------
Confidence            777776322211 2222222                   2334444455555444 2222                    


Q ss_pred             eeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCC
Q 044724          284 AEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP  363 (782)
Q Consensus       284 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  363 (782)
                                                      .+...+++-.|+||+|+|. +||..++-.++.|-.||||+|++... |
T Consensus       121 --------------------------------~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L-P  166 (1255)
T KOG0444|consen  121 --------------------------------NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML-P  166 (1255)
T ss_pred             --------------------------------hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc-C
Confidence                                            1123356667778888777 77877776677777888888887633 3


Q ss_pred             CcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccc-ccCCccccCcCCCCEEeCCCCccccCC
Q 044724          364 SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS-GKIPQWLGNLTGLQHIIMPKNHLEGPI  442 (782)
Q Consensus       364 ~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~  442 (782)
                      +...        .+..|++|+|++|.+..---..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..
T Consensus       167 PQ~R--------RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  167 PQIR--------RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             HHHH--------HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            3333        5777888888888766433344566777888888876544 467888888999999999999988 78


Q ss_pred             ChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC-c
Q 044724          443 PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG-L  521 (782)
Q Consensus       443 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~  521 (782)
                      |+.+..+++|+.|+||+|+|+. +.        ...+...+|+.|+||.|+++ ..|.+++.+++|+.|.+.+|+++- -
T Consensus       238 Pecly~l~~LrrLNLS~N~ite-L~--------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITE-LN--------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceee-ee--------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence            8999999999999999999883 33        23456788999999999998 889999999999999999999872 3


Q ss_pred             CCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc
Q 044724          522 IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP  601 (782)
Q Consensus       522 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  601 (782)
                      +|..++.                                                     +..|+.+..++|.+. ..|+
T Consensus       308 iPSGIGK-----------------------------------------------------L~~Levf~aanN~LE-lVPE  333 (1255)
T KOG0444|consen  308 IPSGIGK-----------------------------------------------------LIQLEVFHAANNKLE-LVPE  333 (1255)
T ss_pred             Cccchhh-----------------------------------------------------hhhhHHHHhhccccc-cCch
Confidence            5555543                                                     457888889999887 8899


Q ss_pred             ccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       602 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                      .+..|..|+.|.|++|++. ..|+.+.-++.|+.||+..|.=--..|.-=..-++|+.-|+.+
T Consensus       334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence            9999999999999999998 7899999999999999999954423443222235666665544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-32  Score=282.83  Aligned_cols=372  Identities=23%  Similarity=0.340  Sum_probs=286.8

Q ss_pred             CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccC
Q 044724          175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSN  254 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~  254 (782)
                      +-.+-.|+++|.++|...|.....+++++.|.|..  ..+ ..+|+.++.                   +.+|+.|.+++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr--t~L-~~vPeEL~~-------------------lqkLEHLs~~H   64 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR--TKL-EQVPEELSR-------------------LQKLEHLSMAH   64 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEech--hhh-hhChHHHHH-------------------Hhhhhhhhhhh
Confidence            34455677777777655566666666776666665  222 245555554                   45556666667


Q ss_pred             ceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCC
Q 044724          255 NHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ  334 (782)
Q Consensus       255 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~  334 (782)
                      |++. .+. ..+..++.|+.+.+..|++...                          .+|..+..+..|+.||||+|++.
T Consensus        65 N~L~-~vh-GELs~Lp~LRsv~~R~N~LKns--------------------------GiP~diF~l~dLt~lDLShNqL~  116 (1255)
T KOG0444|consen   65 NQLI-SVH-GELSDLPRLRSVIVRDNNLKNS--------------------------GIPTDIFRLKDLTILDLSHNQLR  116 (1255)
T ss_pred             hhhH-hhh-hhhccchhhHHHhhhccccccC--------------------------CCCchhcccccceeeecchhhhh
Confidence            7765 222 2366777778777777766422                          23445557788999999999999


Q ss_pred             ccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcc
Q 044724          335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL  414 (782)
Q Consensus       335 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  414 (782)
                       .+|..+-. .+++-+|+||+|++..+....|.        +++.|-.|||++|++. .+|+....+..|++|+|++|.+
T Consensus       117 -EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfi--------nLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  117 -EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFI--------NLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             -hcchhhhh-hcCcEEEEcccCccccCCchHHH--------hhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence             89999877 68999999999999744333333        7899999999999998 5677788999999999999998


Q ss_pred             cccCCccccCcCCCCEEeCCCCccc-cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCc
Q 044724          415 SGKIPQWLGNLTGLQHIIMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN  493 (782)
Q Consensus       415 ~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~  493 (782)
                      ...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|        +.+.++.+|+.|+||+|+
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP--------ecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP--------ECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch--------HHHhhhhhhheeccCcCc
Confidence            7544455667788889999887533 358889999999999999999998 788        456788999999999999


Q ss_pred             ceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCC
Q 044724          494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSN  573 (782)
Q Consensus       494 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (782)
                      |+ ..........+|++|++|.|+++ .+|.++..                                             
T Consensus       257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------------------------  289 (1255)
T KOG0444|consen  257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------------------------  289 (1255)
T ss_pred             ee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------------------------
Confidence            98 55555667788999999999998 56666543                                             


Q ss_pred             eeeecchhhcccceeeccCCccC-ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhh
Q 044724          574 AYTYQGRVLSLLSGIDLSCNKLI-GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLV  652 (782)
Q Consensus       574 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~  652 (782)
                              ++.|+.|++.+|+++ .-||+.++.+..|+++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.
T Consensus       290 --------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  290 --------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             --------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence                    557888899999876 348999999999999999999998 88999999999999999999988 7899999


Q ss_pred             cCCCCcEEEcccCcCcccCCC
Q 044724          653 ELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       653 ~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      -++.|+.||+..|.=-...|.
T Consensus       360 lL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  360 LLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hcCCcceeeccCCcCccCCCC
Confidence            999999999999865444443

>PLN03210 Resistant to P

Probab=99.90  E-value=3.5e-22  Score=244.29  Aligned_cols=367  Identities=17%  Similarity=0.188  Sum_probs=216.4

Q ss_pred             CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCC------CccCCCCcccccccCC-CCCcEEeCCCCCC
Q 044724           66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIA------GCVENEGASSREVTRL-NNLKMFDLSGNSF  138 (782)
Q Consensus        66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l  138 (782)
                      +.+|.++.+.-..   .....++...|.++++|+.|.+..+...      ..+|.      .|..+ ++|+.|++.++.+
T Consensus       531 ~~~v~~i~l~~~~---~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~------~~~~lp~~Lr~L~~~~~~l  601 (1153)
T PLN03210        531 TKKVLGITLDIDE---IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE------GFDYLPPKLRLLRWDKYPL  601 (1153)
T ss_pred             cceeeEEEeccCc---cceeeecHHHHhcCccccEEEEecccccccccceeecCc------chhhcCcccEEEEecCCCC
Confidence            4467777664332   2345566778899999999998766432      12222      24555 3588888888887


Q ss_pred             CCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccc
Q 044724          139 NNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNF  218 (782)
Q Consensus       139 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  218 (782)
                      . .+|..| ...+|++|++++|.+. .++. .+..+++|++|+|+++...... | .+..+++|++|++++  +.....+
T Consensus       602 ~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~i-p-~ls~l~~Le~L~L~~--c~~L~~l  673 (1153)
T PLN03210        602 R-CMPSNF-RPENLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEI-P-DLSMATNLETLKLSD--CSSLVEL  673 (1153)
T ss_pred             C-CCCCcC-CccCCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcC-C-ccccCCcccEEEecC--CCCcccc
Confidence            6 566666 4688888999888887 6775 6778888899998887643332 4 477788888888888  4434556


Q ss_pred             hHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCC
Q 044724          219 LQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ  298 (782)
Q Consensus       219 ~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  298 (782)
                      |..+.. +++|+.|+++                  +|..-..+|..  .++++|+.|++++|......            
T Consensus       674 p~si~~-L~~L~~L~L~------------------~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~------------  720 (1153)
T PLN03210        674 PSSIQY-LNKLEDLDMS------------------RCENLEILPTG--INLKSLYRLNLSGCSRLKSF------------  720 (1153)
T ss_pred             chhhhc-cCCCCEEeCC------------------CCCCcCccCCc--CCCCCCCEEeCCCCCCcccc------------
Confidence            666555 5555555544                  43322233332  14555555555554322111            


Q ss_pred             ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724          299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT  378 (782)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~  378 (782)
                                     |.   ..++|+.|++++|.+. .+|..+ . +++|++|++.++.... ++..+....+......+
T Consensus       721 ---------------p~---~~~nL~~L~L~~n~i~-~lP~~~-~-l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        721 ---------------PD---ISTNISWLDLDETAIE-EFPSNL-R-LENLDELILCEMKSEK-LWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             ---------------cc---ccCCcCeeecCCCccc-cccccc-c-ccccccccccccchhh-ccccccccchhhhhccc
Confidence                           10   1234556666666554 455443 1 4566666555433211 00000000000011245


Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      +|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|++|++++|.....+|..   .++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            67777777776666666667777777777777665444556554 5667777777766544344432   2467777777


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      +|.++ .+|        .++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       855 ~n~i~-~iP--------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIE-EVP--------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCc-cCh--------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            77776 456        456667777777777644323455566667777777777764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=3.9e-22  Score=243.94  Aligned_cols=228  Identities=25%  Similarity=0.279  Sum_probs=124.6

Q ss_pred             CCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724          316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP  395 (782)
Q Consensus       316 ~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~  395 (782)
                      .+..+++|+.|++++|...+.+|..+ . +++|+.|++++|...+.+|.           ..++|++|++++|.+. .+|
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~-l~sL~~L~Lsgc~~L~~~p~-----------~~~nL~~L~L~~n~i~-~lP  741 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPTGI-N-LKSLYRLNLSGCSRLKSFPD-----------ISTNISWLDLDETAIE-EFP  741 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCCcC-C-CCCCCEEeCCCCCCcccccc-----------ccCCcCeeecCCCccc-ccc
Confidence            34456667777777664444666554 2 56777777776654443332           1345666666666654 344


Q ss_pred             ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724          396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI  475 (782)
Q Consensus       396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  475 (782)
                      ..+ .+++|++|++.++.... +..                .+....+..+...++|+.|++++|...+.+|        
T Consensus       742 ~~~-~l~~L~~L~l~~~~~~~-l~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--------  795 (1153)
T PLN03210        742 SNL-RLENLDELILCEMKSEK-LWE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--------  795 (1153)
T ss_pred             ccc-cccccccccccccchhh-ccc----------------cccccchhhhhccccchheeCCCCCCccccC--------
Confidence            333 34556666555433210 000                0011111122233556666666666555566        


Q ss_pred             hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccc
Q 044724          476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE  555 (782)
Q Consensus       476 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (782)
                      ..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|..                              
T Consensus       796 ~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------  844 (1153)
T PLN03210        796 SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------------------  844 (1153)
T ss_pred             hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------------------
Confidence            445566666666666654333455444 5666667776666433322221                              


Q ss_pred             cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724          556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN  635 (782)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  635 (782)
                                                ..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+--..+|..+..+++|+.
T Consensus       845 --------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~  897 (1153)
T PLN03210        845 --------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET  897 (1153)
T ss_pred             --------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence                                      234666777777766 46666777777777777763322245666666777777


Q ss_pred             EecCCC
Q 044724          636 LDLSYN  641 (782)
Q Consensus       636 LdLs~N  641 (782)
                      +++++|
T Consensus       898 L~l~~C  903 (1153)
T PLN03210        898 VDFSDC  903 (1153)
T ss_pred             eecCCC
Confidence            777666

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=7.3e-25  Score=217.92  Aligned_cols=294  Identities=20%  Similarity=0.223  Sum_probs=191.4

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCC-CccccCCChhccCCCCCceEec
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK-NHLEGPIPVEFCQLDWLQILDI  457 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L  457 (782)
                      .-++++|..|+|+.+.+.+|+.+++|++|||++|.|+.+.|++|.++.+|.+|.+.+ |+|+......|.++.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345566667777766666777777777777777777777777777777776666555 7777666677777777777777


Q ss_pred             cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC-ccccccccccccc
Q 044724          458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP-PFFYNTALHESYN  536 (782)
Q Consensus       458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~  536 (782)
                      .-|++.-...        +.|..++++..|.+-+|.+...-...|..+.+++.+.+..|++..... ++......+ ...
T Consensus       148 Nan~i~Cir~--------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~-~~i  218 (498)
T KOG4237|consen  148 NANHINCIRQ--------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM-NPI  218 (498)
T ss_pred             ChhhhcchhH--------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh-chh
Confidence            7777764444        566677777777777777763333467777777777777777432110 111000000 000


Q ss_pred             CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC-cccccccccceeecc
Q 044724          537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP-PPIGNLTRIQILNLS  615 (782)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls  615 (782)
                      ...+..-  .++.....  .........           .|. ..+..+..-..+.+...+.-| ..|..+++|+.|+|+
T Consensus       219 etsgarc--~~p~rl~~--~Ri~q~~a~-----------kf~-c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  219 ETSGARC--VSPYRLYY--KRINQEDAR-----------KFL-CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             hccccee--cchHHHHH--HHhcccchh-----------hhh-hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence            0000000  00000000  000000000           000 001112111222333333444 458999999999999


Q ss_pred             cccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724          616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGL  695 (782)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~  695 (782)
                      +|+++++-+.+|.++..+++|.|..|+|...-...|.++..|+.|+|.+|+++...|..+.....+..+.+.+|||.|+|
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            99999999999999999999999999999777788999999999999999999999998888888999999999999998


Q ss_pred             CC
Q 044724          696 PL  697 (782)
Q Consensus       696 ~l  697 (782)
                      .+
T Consensus       363 ~l  364 (498)
T KOG4237|consen  363 RL  364 (498)
T ss_pred             ch
Confidence            65

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-24  Score=216.25  Aligned_cols=105  Identities=22%  Similarity=0.298  Sum_probs=85.6

Q ss_pred             CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccC-CcCcCcCChhhhcCCC
Q 044724           97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSY-NRLEGSIDVKEFDSFN  175 (782)
Q Consensus        97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ip~~~~~~l~  175 (782)
                      .-..++|..|.|+...+.      +|+.+++||.||||+|.|+.+-|.+|.++++|..|-+.+ |+|+ .+|.+.|++|.
T Consensus        68 ~tveirLdqN~I~~iP~~------aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~  140 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG------AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLS  140 (498)
T ss_pred             cceEEEeccCCcccCChh------hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHH
Confidence            456788999998754443      488899999999999999988899999998888877766 8888 88888889999


Q ss_pred             CCCEEEcccCCCCCccCCCCCCCCCCccEEeccc
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY  209 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~  209 (782)
                      .|+.|.+.-|++.-.. .+.|..+++|..|.+.+
T Consensus       141 slqrLllNan~i~Cir-~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIR-QDALRDLPSLSLLSLYD  173 (498)
T ss_pred             HHHHHhcChhhhcchh-HHHHHHhhhcchhcccc
Confidence            9998888888887764 66777777777777777

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.8e-21  Score=220.67  Aligned_cols=243  Identities=26%  Similarity=0.344  Sum_probs=151.3

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      +|+.|++++|+++ .+|..    .++|++|++++|+++. +|.           ..++|+.|++++|.++. +|..   .
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~-----------lp~sL~~L~Ls~N~L~~-Lp~l---p  281 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPV-----------LPPGLLELSIFSNPLTH-LPAL---P  281 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccC-----------cccccceeeccCCchhh-hhhc---h
Confidence            5666667666666 45532    4667777777776663 232           13456667777776653 3332   2


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      .+|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|.           ..
T Consensus       282 ~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~-----------lp  341 (788)
T PRK15387        282 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT-----------LP  341 (788)
T ss_pred             hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-----------cc
Confidence            45666777777766 33432   3567777777777664 3322   2346666777777663 441           11


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK  561 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (782)
                      .+|++|+|++|+++ .+|..   .++|+.|++++|++++ +|..                                    
T Consensus       342 ~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l------------------------------------  380 (788)
T PRK15387        342 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL------------------------------------  380 (788)
T ss_pred             cccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc------------------------------------
Confidence            45677777777776 34432   2456667777777663 3321                                    


Q ss_pred             cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                                          +.+|+.|++++|+|++ +|...   ++|+.|++++|+|++ +|...   .+|+.|++++|
T Consensus       381 --------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~N  432 (788)
T PRK15387        381 --------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRN  432 (788)
T ss_pred             --------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccC
Confidence                                2346778888888874 55432   467788888888874 56533   45777888888


Q ss_pred             ccccCCchhhhcCCCCcEEEcccCcCcccCCCCc
Q 044724          642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT  675 (782)
Q Consensus       642 ~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~  675 (782)
                      +|+ .+|..+.+++.|+.++|++|+|++.+|..+
T Consensus       433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            887 678888888888888888888887776643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.7e-21  Score=219.21  Aligned_cols=267  Identities=25%  Similarity=0.325  Sum_probs=196.1

Q ss_pred             CCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEE
Q 044724          247 NQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLL  326 (782)
Q Consensus       247 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  326 (782)
                      -..|+++.+.++ .+|+. +.  ++|+.|++.+|+++..+                            .   ..++|++|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~-l~--~~L~~L~L~~N~Lt~LP----------------------------~---lp~~Lk~L  247 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLTSLP----------------------------A---LPPELRTL  247 (788)
T ss_pred             CcEEEcCCCCCC-cCCcc-hh--cCCCEEEccCCcCCCCC----------------------------C---CCCCCcEE
Confidence            456777777776 56653 22  35777777777665321                            0   13678888


Q ss_pred             EccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcE
Q 044724          327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG  406 (782)
Q Consensus       327 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  406 (782)
                      ++++|+++ .+|..    .++|+.|++++|.++. +|.           ...+|+.|++++|+++. +|..   .++|+.
T Consensus       248 dLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~-Lp~-----------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~  306 (788)
T PRK15387        248 EVSGNQLT-SLPVL----PPGLLELSIFSNPLTH-LPA-----------LPSGLCKLWIFGNQLTS-LPVL---PPGLQE  306 (788)
T ss_pred             EecCCccC-cccCc----ccccceeeccCCchhh-hhh-----------chhhcCEEECcCCcccc-cccc---ccccce
Confidence            88888888 66642    4688888888888863 332           13567888899998874 4432   467899


Q ss_pred             EECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCE
Q 044724          407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSH  486 (782)
Q Consensus       407 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~  486 (782)
                      |++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|++++ +|.           ...+|+.
T Consensus       307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~-----------lp~~L~~  366 (788)
T PRK15387        307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPT-----------LPSELYK  366 (788)
T ss_pred             eECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCC-----------CCcccce
Confidence            9999998885 4442   2457788899999885 4432   2579999999999984 552           1357888


Q ss_pred             EEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEE
Q 044724          487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF  566 (782)
Q Consensus       487 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (782)
                      |++++|++++ +|..   ..+|+.|++++|++++ +|..                                         
T Consensus       367 L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-----------------------------------------  400 (788)
T PRK15387        367 LWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-----------------------------------------  400 (788)
T ss_pred             ehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-----------------------------------------
Confidence            9999999984 5643   3579999999999984 4421                                         


Q ss_pred             EEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC
Q 044724          567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK  646 (782)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  646 (782)
                                     .++|+.|++++|++++ +|...   .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.
T Consensus       401 ---------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        401 ---------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ---------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence                           2358889999999985 67543   46888999999999 7899999999999999999999999


Q ss_pred             CchhhhcCC
Q 044724          647 IPRQLVELN  655 (782)
Q Consensus       647 ip~~l~~l~  655 (782)
                      +|..+..+.
T Consensus       461 ~~~~L~~l~  469 (788)
T PRK15387        461 TLQALREIT  469 (788)
T ss_pred             HHHHHHHHh
Confidence            998875543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=6.8e-20  Score=209.42  Aligned_cols=180  Identities=24%  Similarity=0.367  Sum_probs=87.7

Q ss_pred             ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724          299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT  378 (782)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~  378 (782)
                      ...|+++++.++. +|..+  .+.|+.|++++|+++ .+|..+.   ++|+.|++++|.++. +|..+          ..
T Consensus       180 ~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l----------~~  241 (754)
T PRK15370        180 KTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL----------PD  241 (754)
T ss_pred             ceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh----------hc
Confidence            3455555544443 22212  135666666666665 4555442   356666666666552 33322          13


Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      +|+.|++++|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|++|++++|++++ +|..+.  ++|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence            4556666666655 3444332  34566666666555 3444332  355556666655553 333221  245555555


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      +|+++. +|.        .+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++
T Consensus       313 ~N~Lt~-LP~--------~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        313 SNSLTA-LPE--------TL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             CCcccc-CCc--------cc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            555552 331        11  1355555555555552 343332  45555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.7e-19  Score=206.22  Aligned_cols=162  Identities=23%  Similarity=0.412  Sum_probs=110.3

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++|+.|++++|+++ .+|..+.   ++|+.|++++|.+. .+|..+.          ++|+.|++++|+++ .+|..+. 
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~----------s~L~~L~Ls~N~L~-~LP~~l~-  282 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP----------SALQSLDLFHNKIS-CLPENLP-  282 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh----------CCCCEEECcCCccC-ccccccC-
Confidence            46788888888887 6776553   46888888888876 4454332          46788888888887 4565443 


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                       ++|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|.        .+  
T Consensus       283 -~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~--------~l--  344 (754)
T PRK15370        283 -EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPA--------SL--  344 (754)
T ss_pred             -CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CCh--------hh--
Confidence             478888888888874 454432  467788888888874 444332  578888888888774 552        22  


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                      .++|+.|++++|+++ .+|..+  .++|+.|++++|+++.
T Consensus       345 ~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        345 PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence            267888888888877 455544  2577888888887763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=4.2e-20  Score=196.73  Aligned_cols=134  Identities=21%  Similarity=0.156  Sum_probs=59.7

Q ss_pred             EEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc------cCCcccc
Q 044724          326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG------EIPQSLS  399 (782)
Q Consensus       326 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~  399 (782)
                      |+|..+.+++.--..++..++.|++|+++++.++......+    +..+...+.+++++++++.+.+      .++..+.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i----~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKAL----ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHH----HHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            45555555422222232335566666666666543211111    1111134556666666555441      1223344


Q ss_pred             CCCCCcEEECcCCcccccCCccccCcCC---CCEEeCCCCcccc----CCChhccCC-CCCceEeccCCcce
Q 044724          400 KCFLLKGLYLNNNNLSGKIPQWLGNLTG---LQHIIMPKNHLEG----PIPVEFCQL-DWLQILDISDNNIS  463 (782)
Q Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~  463 (782)
                      .+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            4555555555555555433433333333   5555555555442    112223333 44555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=7.8e-20  Score=194.67  Aligned_cols=281  Identities=22%  Similarity=0.245  Sum_probs=201.8

Q ss_pred             EEEcccCcCccc-CCCcccccccccCCCCCCCCEEEccCcccccc----CCccccCCCCCcEEECcCCcccc------cC
Q 044724          350 CFNISMNALDGS-IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE----IPQSLSKCFLLKGLYLNNNNLSG------KI  418 (782)
Q Consensus       350 ~L~Ls~n~l~~~-~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~------~~  418 (782)
                      .|+|..+.+++. .+..+.        .+..|++++++++.++..    ++..+...+.+++++++++.+.+      .+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~--------~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~   73 (319)
T cd00116           2 QLSLKGELLKTERATELLP--------KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL   73 (319)
T ss_pred             ccccccCcccccchHHHHH--------HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence            467777777632 222222        567799999999998543    45566677889999999998862      23


Q ss_pred             CccccCcCCCCEEeCCCCccccCCChhccCCCC---CceEeccCCcceeeCCCCccccchhhhcCC-CCCCEEEcCCCcc
Q 044724          419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDW---LQILDISDNNISGSLPSCFHLLSIEQINGL-SGLSHLILAHNNL  494 (782)
Q Consensus       419 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l-~~L~~L~L~~N~l  494 (782)
                      +..+..+++|++|++++|.+.+..+..+..+..   |++|++++|++++.....+.    ..+..+ ++|+.|++++|.+
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA----KGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH----HHHHhCCCCceEEEcCCCcC
Confidence            456777899999999999998777776666655   99999999998742111100    345566 8999999999999


Q ss_pred             eee----cCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEe
Q 044724          495 EGE----VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTT  570 (782)
Q Consensus       495 ~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (782)
                      ++.    ++..+..+++|++|++++|.+++.....+...-                                        
T Consensus       150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l----------------------------------------  189 (319)
T cd00116         150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL----------------------------------------  189 (319)
T ss_pred             CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH----------------------------------------
Confidence            843    344567788999999999998853211111000                                        


Q ss_pred             cCCeeeecchhhcccceeeccCCccCcc----CCcccccccccceeecccccccccCCcccc-----CCCCCCEEecCCC
Q 044724          571 KSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIGNLTRIQILNLSHNNLTGTIPSTFS-----KLEAYRNLDLSYN  641 (782)
Q Consensus       571 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N  641 (782)
                               ...++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|++|++++|
T Consensus       190 ---------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         190 ---------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             ---------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence                     0034799999999998743    344567788999999999999864333332     2479999999999


Q ss_pred             ccc----cCCchhhhcCCCCcEEEcccCcCccc----CCCCcccc-CCCCcccccCCCC
Q 044724          642 KLN----GKIPRQLVELNAFVVFSFACNNLSGK----IPELTAQF-ATFNESSYKGNPF  691 (782)
Q Consensus       642 ~l~----~~ip~~l~~l~~L~~L~ls~N~l~~~----~p~~~~~~-~~l~~~~~~gNp~  691 (782)
                      .++    ..++..+..++.|+++++++|+++..    .......+ ..+..+++.+|||
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            997    23455677788999999999999854    33333344 5677888888885

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.2e-18  Score=154.31  Aligned_cols=163  Identities=31%  Similarity=0.565  Sum_probs=104.9

Q ss_pred             CcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724          424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC  503 (782)
Q Consensus       424 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  503 (782)
                      ++...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|        ..++.+++|+.|+++-|++. ..|..|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp--------~~issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELP--------TSISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcC--------hhhhhchhhhheecchhhhh-cCccccC
Confidence            3445556666666666 45555666677777777777776 455        45667777777777777776 6777788


Q ss_pred             CCCCCCEEEccCCcCCC-cCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhh
Q 044724          504 GLNQLQLLDLSDNNLHG-LIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL  582 (782)
Q Consensus       504 ~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  582 (782)
                      .++.|+.|||++|++.. ..|..|..                                                     +
T Consensus       100 s~p~levldltynnl~e~~lpgnff~-----------------------------------------------------m  126 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFY-----------------------------------------------------M  126 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhH-----------------------------------------------------H
Confidence            88888888888877763 22322211                                                     3


Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVE  653 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  653 (782)
                      +.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.+.+|+++ .+|..+++
T Consensus       127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            45666666666666 56666666666666666666666 55666666666666666666666 45555444

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=1.4e-15  Score=173.94  Aligned_cols=118  Identities=33%  Similarity=0.618  Sum_probs=107.5

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCCccc-cCCCCcccccCCCCCCCCCCCC-CC
Q 044724          664 CNNLSGKIPELTAQ-FATFNESSYKGNPFLCGLPLPI-CR  701 (782)
Q Consensus       664 ~N~l~~~~p~~~~~-~~~l~~~~~~gNp~lC~~~l~~-C~  701 (782)
                      +|+++|.+|..+.. +..+..+++.+|+++|+.|... |.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999985544 3355678899999999976433 74

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.4e-17  Score=146.02  Aligned_cols=179  Identities=28%  Similarity=0.462  Sum_probs=138.6

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL  398 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  398 (782)
                      ++.+++.|.+|+|+++ .+|..+++ +.+|+.|++++|++. ..|.+++        .+++|+.|++.-|++. ..|..|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~is--------sl~klr~lnvgmnrl~-~lprgf   98 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSIS--------SLPKLRILNVGMNRLN-ILPRGF   98 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhh--------hchhhhheecchhhhh-cCcccc
Confidence            5667888999999998 88888888 889999999999987 4555555        6888888888888887 778888


Q ss_pred             cCCCCCcEEECcCCcccc-cCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhh
Q 044724          399 SKCFLLKGLYLNNNNLSG-KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQ  477 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  477 (782)
                      +.++.|+.|||.+|++.. ..|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|        ..
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp--------ke  168 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP--------KE  168 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc--------HH
Confidence            888888888888888864 46777778888888888888887 67778888888888888888876 567        56


Q ss_pred             hcCCCCCCEEEcCCCcceeecCccccCCC---CCCEEEccCCcCCC
Q 044724          478 INGLSGLSHLILAHNNLEGEVPVQLCGLN---QLQLLDLSDNNLHG  520 (782)
Q Consensus       478 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~  520 (782)
                      ++.++.|++|.+.+|+++ .+|..++++.   +=+.+.+.+|++..
T Consensus       169 ig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             HHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            777888888888888887 6666655442   22334455555543

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=6.6e-14  Score=160.17  Aligned_cols=152  Identities=29%  Similarity=0.435  Sum_probs=94.1

Q ss_pred             CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCC----cccceEecC--CCC--CEEEEEcCCCCCccccccccC
Q 044724           17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCC----QWANVECNN--TTG--RVIQLYLSNTRSMELEEWYLN   88 (782)
Q Consensus        17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C----~w~gv~C~~--~~~--~V~~L~L~~~~~~~~~~~~~~   88 (782)
                      ...+.++|.+||+++|+++.++..  .+|..    +.||    .|.||.|+.  .++  +|+.|+|+++.+.  |.  + 
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~--i-  434 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF--I-  434 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc--C-
Confidence            346678899999999999976542  47953    3443    799999952  222  4777777766552  21  1 


Q ss_pred             cccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh
Q 044724           89 AYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV  168 (782)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~  168 (782)
                      +..+..+++|++|+|++|.+.|.+|..      ++.+++|++|+|++|.+++.+|+.++++++|++|+|++|.++|.+|.
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGNIPPS------LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCcCChH------HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            223555666666666666666655543      56666666666666666666666666666666666666666666665


Q ss_pred             hhhcC-CCCCCEEEcccCC
Q 044724          169 KEFDS-FNNLEVLDMKRNE  186 (782)
Q Consensus       169 ~~~~~-l~~L~~L~Ls~n~  186 (782)
                       .+.. ..++..+++.+|.
T Consensus       509 -~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        509 -ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             -HHhhccccCceEEecCCc
Confidence             3433 2345555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=7.6e-14  Score=146.17  Aligned_cols=195  Identities=30%  Similarity=0.521  Sum_probs=140.0

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      .+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++++++.|+++ ..|..++.|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            4555667788888887 67777777778888888888886 77888888888888888888887 6777777777 8888


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccc
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY  535 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  535 (782)
                      -+++|+++ .+|        +.++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++.. +|+.+..+      
T Consensus       149 i~sNNkl~-~lp--------~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L------  211 (722)
T KOG0532|consen  149 IVSNNKLT-SLP--------EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL------  211 (722)
T ss_pred             EEecCccc-cCC--------cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC------
Confidence            88888887 566        45667778888888888877 667777788888888888887763 33333222      


Q ss_pred             cCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecc
Q 044724          536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS  615 (782)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  615 (782)
                                                                      .|..||+|+|+++ .||-.|..++.|++|-|.
T Consensus       212 ------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  212 ------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             ------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeeec
Confidence                                                            2566777777777 677777777777777777


Q ss_pred             cccccccCCcccc---CCCCCCEEecCCC
Q 044724          616 HNNLTGTIPSTFS---KLEAYRNLDLSYN  641 (782)
Q Consensus       616 ~N~l~~~~p~~~~---~l~~L~~LdLs~N  641 (782)
                      +|.+. ..|..+.   ...--++|+..-+
T Consensus       243 nNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  243 NNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cCCCC-CChHHHHhccceeeeeeecchhc
Confidence            77777 4444432   2233345555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=2.7e-13  Score=142.05  Aligned_cols=195  Identities=28%  Similarity=0.439  Sum_probs=146.4

Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|.++||+.|+++ .+|        ..+..
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp--------~~lC~  142 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLP--------DGLCD  142 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCC--------hhhhc
Confidence            444567788889887 78888888888888888888887 67888888888999999999887 556        23333


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      + -|+.|.+++|+++ .+|..++....|..||.+.|.+.. +|..++.                                
T Consensus       143 l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~--------------------------------  187 (722)
T KOG0532|consen  143 L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY--------------------------------  187 (722)
T ss_pred             C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhh--------------------------------
Confidence            3 3788888888887 777788888888888888888873 3333322                                


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                           +.+|+.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+
T Consensus       188 ---------------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  188 ---------------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             ---------------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence                                 556778888888887 567777755 4888888888888 7888888888888888888


Q ss_pred             CccccCCchhhhc---CCCCcEEEcccCc
Q 044724          641 NKLNGKIPRQLVE---LNAFVVFSFACNN  666 (782)
Q Consensus       641 N~l~~~ip~~l~~---l~~L~~L~ls~N~  666 (782)
                      |.|+ ..|..+..   ..-.++|+..-.+
T Consensus       244 NPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  244 NPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             CCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8887 45555433   3344566666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.4e-11  Score=134.99  Aligned_cols=123  Identities=34%  Similarity=0.498  Sum_probs=68.8

Q ss_pred             EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC-CCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724          382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT-GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN  460 (782)
Q Consensus       382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  460 (782)
                      .+++..|.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666532222 2334456777777777776 4444444553 6666667666666 34445566666666666666


Q ss_pred             cceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724          461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       461 ~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      +++. +|        ...+..++|+.|++++|+++ .+|........|+++.+++|+
T Consensus       174 ~l~~-l~--------~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLSD-LP--------KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhh-hh--------hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            6663 33        12224556666666666665 444443344445566666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=2.3e-11  Score=133.40  Aligned_cols=198  Identities=35%  Similarity=0.506  Sum_probs=101.4

Q ss_pred             EEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCC-CCceEeccCCcceeeCCCCccccchhhhcCCCCC
Q 044724          406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLD-WLQILDISDNNISGSLPSCFHLLSIEQINGLSGL  484 (782)
Q Consensus       406 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L  484 (782)
                      .++++.|.+... ...+..++.++.|++.+|.++ .++......+ +|+.|++++|++. .+|        ..++.+++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~--------~~~~~l~~L  165 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP--------SPLRNLPNL  165 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh--------hhhhccccc
Confidence            455555555311 122333455666666666665 3333344442 5666666666665 232        234556666


Q ss_pred             CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccccc
Q 044724          485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE  564 (782)
Q Consensus       485 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (782)
                      +.|++++|+++ .+|......++|+.|++++|+++.. |....                                     
T Consensus       166 ~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~-------------------------------------  206 (394)
T COG4886         166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIE-------------------------------------  206 (394)
T ss_pred             cccccCCchhh-hhhhhhhhhhhhhheeccCCccccC-chhhh-------------------------------------
Confidence            66666666665 3443333555666666666665522 21110                                     


Q ss_pred             EEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                                      .+..|++|++++|.+. .++..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++
T Consensus       207 ----------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         207 ----------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ----------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence                            0223555556655432 34445555555555556666555 22455555555666666666665


Q ss_pred             cCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724          645 GKIPRQLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       645 ~~ip~~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      . ++. +..+..++.|++++|.++...|.
T Consensus       269 ~-i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         269 S-ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             c-ccc-ccccCccCEEeccCccccccchh
Confidence            2 222 55555666666666655555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=3.3e-11  Score=112.95  Aligned_cols=133  Identities=26%  Similarity=0.354  Sum_probs=53.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCccCCCCccccccc-CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724           92 FTPFQQLESLSLSANNIAGCVENEGASSREVT-RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE  170 (782)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~  170 (782)
                      +.+..++++|+|++|.|+..- .       ++ .+.+|+.|||++|.++..  +.+..+++|++|++++|+++ .++...
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~-------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-N-------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGL   83 (175)
T ss_dssp             ----------------------S---------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHH
T ss_pred             ccccccccccccccccccccc-c-------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccch
Confidence            345567899999999997432 1       55 588999999999999863  46888999999999999998 776522


Q ss_pred             hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCC
Q 044724          171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS  235 (782)
Q Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~  235 (782)
                      ...+++|++|++++|+|.....-..+..+++|++|++.+|...-....-..+...+|+|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            35689999999999999876534567789999999999965433333222333338888888753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=5.8e-11  Score=115.15  Aligned_cols=132  Identities=25%  Similarity=0.239  Sum_probs=103.8

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      ....|+++||++|.|+ .+.++..-.+.++.|++++|.+...  ..+..+++|+.|||++|.++. +...-..+.+.+.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence            4567899999999887 5566677788899999999998733  237888999999999998873 44444567788999


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec-CccccCCCCCCEEEccCCcCCCc
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV-PVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                      .|++|.+...          ..++++-+|..||+++|+|.... ...++++|-|+.+.|.+|++.+.
T Consensus       358 ~La~N~iE~L----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIETL----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHhhh----------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9999988632          45677888999999999987432 34688899999999999999854

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=6.1e-11  Score=114.95  Aligned_cols=87  Identities=29%  Similarity=0.300  Sum_probs=47.1

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCC-chhhhcCCCCcEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI-PRQLVELNAFVVF  660 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L  660 (782)
                      +++|+.||||+|.++ .+..+=..+-+.+.|+|+.|.|...  +.++.+-+|+.||+++|+|.... -..+++++-|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            344555555555555 2333434455556666666655421  23555566666666666665321 1245666666666


Q ss_pred             EcccCcCcccC
Q 044724          661 SFACNNLSGKI  671 (782)
Q Consensus       661 ~ls~N~l~~~~  671 (782)
                      .|.+|.+.+.+
T Consensus       405 ~L~~NPl~~~v  415 (490)
T KOG1259|consen  405 RLTGNPLAGSV  415 (490)
T ss_pred             hhcCCCccccc
Confidence            66666666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=2e-11  Score=121.33  Aligned_cols=95  Identities=29%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhc---CCCCcEEEcccCcCccc----CCCcccccccccCCCCCCCCEEEccCcccc
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDI---LPSLSCFNISMNALDGS----IPSSFEGHMFSKNFNLTNVRWLLLEENHFV  391 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~----~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~  391 (782)
                      .+..++.+++++|.+...-...+...   .+.|+..++++- ++|.    +|+.+.- +-..+..+++|++++||+|.+.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~-l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM-LSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-HHHHHhcCCceeEeeccccccC
Confidence            45677788888887753333333322   345566665542 2222    2222110 0011113556666666666665


Q ss_pred             ccCCcc----ccCCCCCcEEECcCCccc
Q 044724          392 GEIPQS----LSKCFLLKGLYLNNNNLS  415 (782)
Q Consensus       392 ~~~~~~----l~~l~~L~~L~Ls~N~l~  415 (782)
                      -..+..    +..+..|++|.|.+|.+.
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            433332    234566666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=8.4e-11  Score=120.12  Aligned_cols=212  Identities=23%  Similarity=0.248  Sum_probs=150.9

Q ss_pred             cCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccC--CChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724          399 SKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGP--IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI  475 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  475 (782)
                      +++.+|+.+.|.+..+..... .....|++++.|||+.|-+...  +-.....+|+|+.|+++.|++.....+       
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-------  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-------  190 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence            457789999999988863221 3667899999999999987743  233456789999999999998643332       


Q ss_pred             hhhcCCCCCCEEEcCCCcceee-cCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccc
Q 044724          476 EQINGLSGLSHLILAHNNLEGE-VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNT  554 (782)
Q Consensus       476 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (782)
                      ..-..++.|+.|.|+.|.++.. +......+|+|+.|+|..|...+.  ...                            
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~----------------------------  240 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KAT----------------------------  240 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecc----------------------------
Confidence            2223578899999999998732 233456789999999999962211  000                            


Q ss_pred             ccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccC-Ccccccccccceeeccccccccc-CCcc-----c
Q 044724          555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI-PPPIGNLTRIQILNLSHNNLTGT-IPST-----F  627 (782)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----~  627 (782)
                                             ...++..|+.|||++|++...- -...+.++.|+.|+++.+.++.. +|+.     -
T Consensus       241 -----------------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  241 -----------------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             -----------------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence                                   0123667999999999987432 14578899999999999998853 3333     3


Q ss_pred             cCCCCCCEEecCCCccccCCc--hhhhcCCCCcEEEcccCcCcccC
Q 044724          628 SKLEAYRNLDLSYNKLNGKIP--RQLVELNAFVVFSFACNNLSGKI  671 (782)
Q Consensus       628 ~~l~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~~~~  671 (782)
                      ...++|+.|+++.|++.. .+  ..+..+.+|+.|....|.++.+-
T Consensus       298 ~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cccccceeeecccCcccc-ccccchhhccchhhhhhcccccccccc
Confidence            567899999999999963 22  24555677788888888887543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.2e-10  Score=119.11  Aligned_cols=157  Identities=22%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             CCCCCcEEeCCCCCCCCcch-hhcCCCCCCCEEEccCCcCcCcCC-h-hhhcCCCCCCEEEcccCCCCCccCCCCCCCCC
Q 044724          124 RLNNLKMFDLSGNSFNNSIL-SSLTRLSSVRSLKLSYNRLEGSID-V-KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFK  200 (782)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ip-~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  200 (782)
                      ++.+|+...|.+........ +....|++++.||||+|-+. ... . .....+|+|+.|+|+.|++....-...-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            45555555555554432111 23445556666666655554 211 1 12345556666666666554332111122445


Q ss_pred             CccEEecccCcccccccchHHHhhcCCCCCeEeCCCC-CC---C--CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcE
Q 044724          201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF-SP---S--NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKI  274 (782)
Q Consensus       201 ~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~-ip---~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  274 (782)
                      .|+.|.++.  +.++......+...+|+|+.|+|+++ ..   .  ...+..|+.|||++|++...-.....+.++.|+.
T Consensus       198 ~lK~L~l~~--CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  198 HLKQLVLNS--CGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhheEEecc--CCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            566666666  33333222222222444444444431 00   0  1223445555555555432211122445555555


Q ss_pred             EEccCCccc
Q 044724          275 FHAYNNEIH  283 (782)
Q Consensus       275 L~l~~n~l~  283 (782)
                      |+++.+.+.
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=3.5e-11  Score=119.67  Aligned_cols=167  Identities=20%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcc---ccccCCc-------cccCCCCCcEEECcCCcc
Q 044724          345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENH---FVGEIPQ-------SLSKCFLLKGLYLNNNNL  414 (782)
Q Consensus       345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-------~l~~l~~L~~L~Ls~N~l  414 (782)
                      +.+++.+++++|.+.......+.    ..+.+.++|+..++++--   ....+|+       ++..+++|++||||+|.+
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~----~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIA----KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHH----HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            57888999999887643332222    112256677777776541   2223333       345667888888888887


Q ss_pred             cccCCcc----ccCcCCCCEEeCCCCccccCCChh-------------ccCCCCCceEeccCCcceeeCCCCccccchhh
Q 044724          415 SGKIPQW----LGNLTGLQHIIMPKNHLEGPIPVE-------------FCQLDWLQILDISDNNISGSLPSCFHLLSIEQ  477 (782)
Q Consensus       415 ~~~~p~~----~~~l~~L~~L~L~~N~l~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  477 (782)
                      ....+..    +.++..|++|.|.+|.+.-.--..             ...-+.|++++.++|++.......+.    ..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A----~~  180 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA----EA  180 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH----HH
Confidence            6554443    345777888888887665221111             12234566666666655422111111    23


Q ss_pred             hcCCCCCCEEEcCCCcceee----cCccccCCCCCCEEEccCCcCC
Q 044724          478 INGLSGLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       478 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      |...+.|+.+.++.|.|...    ....+..++.|++|||.+|-|+
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            44445555565555555311    1223455555555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.95  E-value=1.1e-10  Score=128.21  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccC---Cchh-hhcCCCCcEE
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGK---IPRQ-LVELNAFVVF  660 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L  660 (782)
                      |+.+++++|.+. .++..+..+..+..|++++|++...-  .+.....+..+..+.|.+...   .... ....+.++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566777777766 33355666666777777777766332  234455566666666665521   1111 3445666666


Q ss_pred             EcccCcCcccCC
Q 044724          661 SFACNNLSGKIP  672 (782)
Q Consensus       661 ~ls~N~l~~~~p  672 (782)
                      .+.+|......+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            777776665554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.94  E-value=1.1e-09  Score=77.01  Aligned_cols=41  Identities=37%  Similarity=0.830  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhHhcCC-CCCCCcCCCCCCCCCCCCCcccceEec
Q 044724           22 DHERFALLQLKHFFN-DPVNYLHDWVDAKGATDCCQWANVECN   63 (782)
Q Consensus        22 ~~~~~aLl~~k~~~~-~~~~~l~~W~~~~~~~~~C~w~gv~C~   63 (782)
                      ++|++||++||+++. +|.+.+.+|... ...+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~-~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPS-SDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCc-CCCCCeeeccEEeC
Confidence            689999999999999 677899999863 02799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=5.9e-10  Score=104.50  Aligned_cols=124  Identities=26%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             CCCCCEEEccCccccccCCcccc-CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhc-cCCCCCce
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLS-KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEF-CQLDWLQI  454 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~  454 (782)
                      ..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.|+..  +.+..++.|++|++++|+|+.. ...+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            33455555555555422  1233 345555666666655532  1344555666666666666532 2222 24566666


Q ss_pred             EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec---CccccCCCCCCEEE
Q 044724          455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV---PVQLCGLNQLQLLD  512 (782)
Q Consensus       455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~  512 (782)
                      |++++|+|...-.  +     ..+..+++|++|+|.+|.+....   ...+..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~--l-----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNE--L-----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCC--C-----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHH--h-----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            6666666653211  1     34555666666666666665221   11245567777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.7e-09  Score=83.19  Aligned_cols=60  Identities=47%  Similarity=0.619  Sum_probs=34.2

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL  643 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  643 (782)
                      +|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            355556666655544445555555555666665555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.7e-09  Score=83.30  Aligned_cols=61  Identities=34%  Similarity=0.503  Sum_probs=57.2

Q ss_pred             cccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724          607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL  667 (782)
Q Consensus       607 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  667 (782)
                      ++|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988888999999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=7e-10  Score=121.78  Aligned_cols=241  Identities=26%  Similarity=0.258  Sum_probs=162.5

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      .+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|..+ ...+..+++|++|++++|.|+...+  +..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence            46677777888888774 333467778888888888888743 3336678888888888888875543  4566668888


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCccccccccccc
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHES  534 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  534 (782)
                      ++++|.++..          ..+..+++|+.+++++|++...-+ . ...+.+++.+++++|.+...-...         
T Consensus       146 ~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~---------  205 (414)
T KOG0531|consen  146 NLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD---------  205 (414)
T ss_pred             eeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---------
Confidence            8888888743          345557888888888888874433 2 466778888888888776321110         


Q ss_pred             ccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccc--ccee
Q 044724          535 YNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTR--IQIL  612 (782)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L  612 (782)
                                                                    .+..+..+++..|.++-.-  .+..+..  |+.+
T Consensus       206 ----------------------------------------------~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l  237 (414)
T KOG0531|consen  206 ----------------------------------------------LLKKLVLLSLLDNKISKLE--GLNELVMLHLREL  237 (414)
T ss_pred             ----------------------------------------------HHHHHHHhhcccccceecc--CcccchhHHHHHH
Confidence                                                          0223445588888887432  2233333  8999


Q ss_pred             ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccC---CCC-ccccCCCCcccccC
Q 044724          613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKI---PEL-TAQFATFNESSYKG  688 (782)
Q Consensus       613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~---p~~-~~~~~~l~~~~~~g  688 (782)
                      ++++|.+. .++..+..+..++.||+++|++...  ..+.....+..+....|.+...-   ... .....++....+.+
T Consensus       238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (414)
T KOG0531|consen  238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL  314 (414)
T ss_pred             hcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence            99999998 5556778889999999999998754  23455666777778888765321   110 23344555666666


Q ss_pred             CCC
Q 044724          689 NPF  691 (782)
Q Consensus       689 Np~  691 (782)
                      ||.
T Consensus       315 ~~~  317 (414)
T KOG0531|consen  315 NPI  317 (414)
T ss_pred             Ccc
Confidence            663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=7.4e-09  Score=121.31  Aligned_cols=108  Identities=24%  Similarity=0.289  Sum_probs=83.2

Q ss_pred             CCCCCCEEeCCCCC--CCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724           94 PFQQLESLSLSANN--IAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF  171 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~  171 (782)
                      ..+.|++|-+..|.  +...      +...|..++.|++|||++|.=-+.+|..++.+.+||+|++++..++ .+|. .+
T Consensus       543 ~~~~L~tLll~~n~~~l~~i------s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l  614 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEI------SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GL  614 (889)
T ss_pred             CCCccceEEEeecchhhhhc------CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HH
Confidence            34578888888775  3211      1223777899999999988666678999999999999999999988 8887 88


Q ss_pred             cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccC
Q 044724          172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA  210 (782)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n  210 (782)
                      .++..|.+|++..+...... |.....+++||+|.+...
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            89999999999887755443 666677889999988763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=1.3e-08  Score=119.21  Aligned_cols=129  Identities=23%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCC--CCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724           94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNS--FNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF  171 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~  171 (782)
                      .....|...+-+|.+.....        =..++.|++|-+..|.  +.....+.|..++.|++|||++|.=-+.+|. .+
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~--------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I  591 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAG--------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SI  591 (889)
T ss_pred             chhheeEEEEeccchhhccC--------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HH
Confidence            34566777777776642222        2345578888888886  5545556688899999999998765557886 88


Q ss_pred             cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724          172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN  236 (782)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~  236 (782)
                      +.+-+|++|++++..+..+  |..++++++|.+|++..  +.....+|..... +++|++|.+..
T Consensus       592 ~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~--~~~l~~~~~i~~~-L~~Lr~L~l~~  651 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEV--TGRLESIPGILLE-LQSLRVLRLPR  651 (889)
T ss_pred             hhhhhhhcccccCCCcccc--chHHHHHHhhheecccc--ccccccccchhhh-cccccEEEeec
Confidence            8899999999999988866  88899999999999987  4433334555555 77888777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=2.5e-08  Score=108.13  Aligned_cols=107  Identities=24%  Similarity=0.339  Sum_probs=85.0

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCc-cccCCCCCCEEecCCCccccCCchhhhcCCCCcEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS-TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF  660 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  660 (782)
                      ++.++.||||+|+++..  +.+..|+.|+.|||++|.+. .+|. ...+++ |+.|.+++|.++..  ..+.+|.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence            77899999999999855  37899999999999999999 4453 333444 99999999999843  467899999999


Q ss_pred             EcccCcCcccCCC-CccccCCCCcccccCCCCCCC
Q 044724          661 SFACNNLSGKIPE-LTAQFATFNESSYKGNPFLCG  694 (782)
Q Consensus       661 ~ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~lC~  694 (782)
                      |+++|-|++--.- .+..+..+..+.++|||.-|.
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999988763211 134456677889999998884

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=8.9e-09  Score=111.49  Aligned_cols=126  Identities=25%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      .|.+.+.++|++. .+..++.-++.|+.|+|++|+++..  +.+..|++|++|||++|.+.....-...++. |+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4555566666665 3344455556666666666666533  2556666666666666666643333333444 6666666


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcC
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNL  518 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l  518 (782)
                      +|.++..          ..+.++.+|+.||+++|-+.+... ..++.+..|+.|.|.+|++
T Consensus       241 nN~l~tL----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6666532          235566666666666666553211 1233445566666666665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.7e-08  Score=98.34  Aligned_cols=176  Identities=22%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc-CcCcCChhhhcCCC
Q 044724           97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR-LEGSIDVKEFDSFN  175 (782)
Q Consensus        97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~  175 (782)
                      .|++||||+..|+...-.     ..++.|.+|+.|.|.++.+.+.+-..+++-.+|+.|||+.+. ++..--.-.+.+++
T Consensus       186 Rlq~lDLS~s~it~stl~-----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH-----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHH-----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            588999998877532111     126778899999999999998888889999999999998864 33111111467889


Q ss_pred             CCCEEEcccCCCCCccCCCCCCC-CCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCC--C-CC----CCCCCCC
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPH-FKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF--S-PS----NDSWTLN  247 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~--i-p~----~~~l~~L  247 (782)
                      .|+.|+|+.|.+........+.+ -++|+.|++++++-.+...-...+...+++|.+|||++.  + +.    +..++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            99999999988765432222222 257888899886555555555566666888998888872  2 11    5667777


Q ss_pred             CeEEccCceeeeecCCC---CcCCCCCCcEEEccCC
Q 044724          248 QVLWLSNNHFRIPISPD---PLFNHSRLKIFHAYNN  280 (782)
Q Consensus       248 ~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~l~~n  280 (782)
                      ++|.++.|-.   ++++   .+...+.|.+|++.++
T Consensus       341 ~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence            7777777752   2222   2345556666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=3.2e-08  Score=96.45  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=42.4

Q ss_pred             CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724          175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN  236 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~  236 (782)
                      +.||+|||+...|+...+-..+..|.+|+.|.+.+  +.+...+...+++ -.+|+.|+++.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg--~~LdD~I~~~iAk-N~~L~~lnlsm  243 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG--LRLDDPIVNTIAK-NSNLVRLNLSM  243 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc--cccCcHHHHHHhc-cccceeecccc
Confidence            35888888887776543334567778888888888  7777777777777 67777776664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=1.4e-07  Score=81.63  Aligned_cols=58  Identities=22%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                      ++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            344444444444 34444444444444444444444 33444444444444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=3.8e-07  Score=78.92  Aligned_cols=103  Identities=21%  Similarity=0.341  Sum_probs=63.5

Q ss_pred             ccceeeccCCccCccCCcc---cccccccceeecccccccccCCcccc-CCCCCCEEecCCCccccCCchhhhcCCCCcE
Q 044724          584 LLSGIDLSCNKLIGHIPPP---IGNLTRIQILNLSHNNLTGTIPSTFS-KLEAYRNLDLSYNKLNGKIPRQLVELNAFVV  659 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  659 (782)
                      .+..+|||++++. .+++.   +.....|+..+|++|.+. ..|..|. ..+.++.|+|++|+|+ .+|++++.++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455777777665 33433   333445556677777777 4444444 3346777777777777 56777777777777


Q ss_pred             EEcccCcCcccCCCCccccCCCCcccccCCC
Q 044724          660 FSFACNNLSGKIPELTAQFATFNESSYKGNP  690 (782)
Q Consensus       660 L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp  690 (782)
                      +|+++|.+...+.. +.++.+|..++..+|.
T Consensus       105 lNl~~N~l~~~p~v-i~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRV-IAPLIKLDMLDSPENA  134 (177)
T ss_pred             cccccCccccchHH-HHHHHhHHHhcCCCCc
Confidence            77777777654443 4556666666555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=2.2e-06  Score=83.87  Aligned_cols=84  Identities=25%  Similarity=0.378  Sum_probs=45.0

Q ss_pred             CCCCcEEeCCCCCCCC--cchhhcCCCCCCCEEEccCCcCcCcCChhhh-cCCCCCCEEEcccCCCCCccCCCCCCCCCC
Q 044724          125 LNNLKMFDLSGNSFNN--SILSSLTRLSSVRSLKLSYNRLEGSIDVKEF-DSFNNLEVLDMKRNEIDNLVVPQGFPHFKS  201 (782)
Q Consensus       125 l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  201 (782)
                      +++++.|||.+|.++.  .+..-+.++|+|++|+|+.|.+...|.  .+ ..+.+|++|-|.+..+.-......+..++.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            4556666666666653  233334566666666666666653332  12 244566666666655543322344555666


Q ss_pred             ccEEecccC
Q 044724          202 LEHLDMSYA  210 (782)
Q Consensus       202 L~~L~L~~n  210 (782)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            666666653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.6e-05  Score=55.85  Aligned_cols=36  Identities=33%  Similarity=0.551  Sum_probs=17.3

Q ss_pred             CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724          127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus       127 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      +|++|++++|+++. +|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            45555555555552 3334555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=9.1e-06  Score=57.13  Aligned_cols=36  Identities=33%  Similarity=0.586  Sum_probs=16.7

Q ss_pred             ccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          608 RIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       608 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 33334455555555555555544

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=4.5e-06  Score=95.75  Aligned_cols=129  Identities=25%  Similarity=0.298  Sum_probs=83.1

Q ss_pred             CCCcEEeCCCCCC-CCcchhhcC-CCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc
Q 044724          126 NNLKMFDLSGNSF-NNSILSSLT-RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE  203 (782)
Q Consensus       126 ~~L~~L~Ls~N~l-~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  203 (782)
                      .+|++||+++... ....|..++ .+|+|++|.+++-.+...==.....++|+|..||+|+.+++..   .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            5788888888644 223444454 4788999988886664210011456788899999998888776   5778888888


Q ss_pred             EEecccCcccccc-cchHHHhhcCCCCCeEeCCCC----CC--------CCCCCCCCCeEEccCceeeee
Q 044724          204 HLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF----SP--------SNDSWTLNQVLWLSNNHFRIP  260 (782)
Q Consensus       204 ~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~----ip--------~~~~l~~L~~L~Ls~n~l~~~  260 (782)
                      .|.+.+  ..+.. .....+.+ +++|+.||+|..    .+        ....+|+|+.||.|++.+...
T Consensus       199 ~L~mrn--Le~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRN--LEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccC--CCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            888887  55443 34456666 888888888761    11        022355566666665555433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.77  E-value=2.8e-06  Score=82.17  Aligned_cols=218  Identities=18%  Similarity=0.150  Sum_probs=107.1

Q ss_pred             hcCCCCCCEEEcccCCCCCcc---CCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCC
Q 044724          171 FDSFNNLEVLDMKRNEIDNLV---VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN  247 (782)
Q Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L  247 (782)
                      +..+..+..+|||+|.|....   +...+.+-.+|+..+++.  . ++|..-+.+..   +|+.|     .|.+..|+.|
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd--~-ftgr~kde~~~---~L~~L-----l~aLlkcp~l   94 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD--A-FTGRDKDELYS---NLVML-----LKALLKCPRL   94 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh--h-hhcccHHHHHH---HHHHH-----HHHHhcCCcc
Confidence            445778888888888886532   123345556777777775  2 22322222211   01100     1223456666


Q ss_pred             CeEEccCceeeeecCCC---CcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCc
Q 044724          248 QVLWLSNNHFRIPISPD---PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLR  324 (782)
Q Consensus       248 ~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  324 (782)
                      +..+||+|.|....|+.   .++..+.|+.|.+++|.+.......    +. ..|.+  +..       .....+-|.|+
T Consensus        95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r----ig-kal~~--la~-------nKKaa~kp~Le  160 (388)
T COG5238          95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR----IG-KALFH--LAY-------NKKAADKPKLE  160 (388)
T ss_pred             eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhH----HH-HHHHH--HHH-------HhhhccCCCce
Confidence            67777777665444431   2344455666666665542110000    00 00000  000       01123446778


Q ss_pred             EEEccCCcCCccCChhhhh----cCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccC----Cc
Q 044724          325 LLDVSNNNFQGCIPVEIGD----ILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI----PQ  396 (782)
Q Consensus       325 ~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~----~~  396 (782)
                      ..+...|++. ..|.....    .-.+|+.+.+..|.+.   |......++..+..+.+|+.||+.+|.++-.-    ..
T Consensus       161 ~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         161 VVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             EEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            8888888776 44443221    1236777777777654   33222222222335667777777777665322    22


Q ss_pred             cccCCCCCcEEECcCCccccc
Q 044724          397 SLSKCFLLKGLYLNNNNLSGK  417 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~  417 (782)
                      ++..++.|+.|.+.+|-++..
T Consensus       237 al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             Hhcccchhhhccccchhhccc
Confidence            344455566666666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=7.2e-05  Score=79.10  Aligned_cols=76  Identities=20%  Similarity=0.372  Sum_probs=49.2

Q ss_pred             ccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCc
Q 044724          422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPV  500 (782)
Q Consensus       422 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  500 (782)
                      +..+.++++|++++|.++. +|.   -.++|+.|.++++.--..+|.        .+  .++|++|++++| .+. .+| 
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~--------~L--P~nLe~L~Ls~Cs~L~-sLP-  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPG--------SI--PEGLEKLTVCHCPEIS-GLP-  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCc--------hh--hhhhhheEccCccccc-ccc-
Confidence            4556888899999888773 452   224688888887544345562        22  257888888888 444 344 


Q ss_pred             cccCCCCCCEEEccCCcC
Q 044724          501 QLCGLNQLQLLDLSDNNL  518 (782)
Q Consensus       501 ~~~~l~~L~~L~Ls~N~l  518 (782)
                           .+|+.|+++.+..
T Consensus       112 -----~sLe~L~L~~n~~  124 (426)
T PRK15386        112 -----ESVRSLEIKGSAT  124 (426)
T ss_pred             -----cccceEEeCCCCC
Confidence                 3577777776554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=4.7e-06  Score=81.66  Aligned_cols=108  Identities=19%  Similarity=0.302  Sum_probs=69.6

Q ss_pred             cCCCCCcEEeCCCCCCCCcc-hhhc-CCCCCCCEEEccCCcCcC--cCChhhhcCCCCCCEEEcccCCCCCccCCCCC-C
Q 044724          123 TRLNNLKMFDLSGNSFNNSI-LSSL-TRLSSVRSLKLSYNRLEG--SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGF-P  197 (782)
Q Consensus       123 ~~l~~L~~L~Ls~N~l~~~~-~~~~-~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~  197 (782)
                      +.+..++.|-+.++.+.... ...| ..++.++.|||.+|.++.  .|.. .+.++|.|++|+|+.|.+...+  ..+ .
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I--~~lp~  118 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDI--KSLPL  118 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCcc--ccCcc
Confidence            34445666667666664321 1223 357899999999999972  2222 4679999999999999998764  344 4


Q ss_pred             CCCCccEEecccCcccccccchHHHhhcCCCCCeEeCC
Q 044724          198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS  235 (782)
Q Consensus       198 ~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~  235 (782)
                      .+.+|+.|-|.+  ..+.-.-...+...+|.+++|.++
T Consensus       119 p~~nl~~lVLNg--T~L~w~~~~s~l~~lP~vtelHmS  154 (418)
T KOG2982|consen  119 PLKNLRVLVLNG--TGLSWTQSTSSLDDLPKVTELHMS  154 (418)
T ss_pred             cccceEEEEEcC--CCCChhhhhhhhhcchhhhhhhhc
Confidence            678999999988  444333333333325555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=8.8e-05  Score=78.45  Aligned_cols=55  Identities=16%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCC
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN  436 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  436 (782)
                      .+.+++.|++++|.++ .+| .+  ..+|++|.++++.--..+|..+.  ++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            4567777777777666 334 11  23577777766433234444332  35666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.67  E-value=1e-05  Score=78.36  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=43.8

Q ss_pred             hccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceee----cCcc---------ccCCCCCCEE
Q 044724          445 EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE----VPVQ---------LCGLNQLQLL  511 (782)
Q Consensus       445 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~---------~~~l~~L~~L  511 (782)
                      .+..||.|+..+||.|.+....|..+.    +.++.-+.|.+|.|++|.+.-.    +..+         ..+-|.|++.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~----d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELG----DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHH----HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            345677777777777777666664433    4556667777777777765311    1111         2234677888


Q ss_pred             EccCCcCC
Q 044724          512 DLSDNNLH  519 (782)
Q Consensus       512 ~Ls~N~l~  519 (782)
                      +...|++.
T Consensus       163 icgrNRle  170 (388)
T COG5238         163 ICGRNRLE  170 (388)
T ss_pred             Eeccchhc
Confidence            88888775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=6.9e-05  Score=69.82  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=67.3

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF  174 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  174 (782)
                      ..+...+||++|++... +       .|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|++|.+..--....+..+
T Consensus        41 ~d~~d~iDLtdNdl~~l-~-------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL-D-------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC  112 (233)
T ss_pred             ccccceecccccchhhc-c-------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC
Confidence            44566778888877422 1       166777788888888888766665555567788888888776521111235667


Q ss_pred             CCCCEEEcccCCCCCccC--CCCCCCCCCccEEeccc
Q 044724          175 NNLEVLDMKRNEIDNLVV--PQGFPHFKSLEHLDMSY  209 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~L~~  209 (782)
                      |+|++|.+-+|.++...-  --.+..+++|+.||...
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            777777777776654320  12345566666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=8.5e-05  Score=69.23  Aligned_cols=108  Identities=25%  Similarity=0.370  Sum_probs=76.7

Q ss_pred             CCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccE
Q 044724          125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH  204 (782)
Q Consensus       125 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  204 (782)
                      +.+...+||++|.+..  ...|..+++|.+|.|++|+|+ .|.+.--..+++|+.|.|.+|+|..+.--.-+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3467788999998864  356788889999999999998 6766444556789999999998876543456778889999


Q ss_pred             EecccCcccccccch-HHHhhcCCCCCeEeCCC
Q 044724          205 LDMSYAHIALNTNFL-QIIGESMPSLKHLSLSN  236 (782)
Q Consensus       205 L~L~~n~~~~~~~~~-~~l~~~l~~L~~L~L~~  236 (782)
                      |.+-+|...-....- ..+.. +++|+.||.+.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~k-lp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYK-LPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEe-cCcceEeehhh
Confidence            988885332111111 12233 88899998876

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.21  E-value=1.1e-05  Score=82.85  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             CCCCCcEEEccCCc-CCccCChhhhhcCCCCcEEEcccCcC-cccCCCcccccccccCCCCCCCCEEEccCcccccc--C
Q 044724          319 SHKSLRLLDVSNNN-FQGCIPVEIGDILPSLSCFNISMNAL-DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE--I  394 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~--~  394 (782)
                      .+..|+.|+.+++. ++..+-..+++..++|+.|.++.++- +..--..++       .+++.|+.+++..+.....  +
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~~~~~~d~tL  364 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEECGLITDGTL  364 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhcccccceehhhhH
Confidence            45677777777763 33333345555677888888877763 211111111       1577788888877754322  2


Q ss_pred             CccccCCCCCcEEECcCCcccccC-----CccccCcCCCCEEeCCCCccc-cCCChhccCCCCCceEeccCCcceeeCCC
Q 044724          395 PQSLSKCFLLKGLYLNNNNLSGKI-----PQWLGNLTGLQHIIMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPS  468 (782)
Q Consensus       395 ~~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  468 (782)
                      ...-.+++.|+.+.++++......     ...-..+..|+.+.++++... ...-..+..+++|+.+++-+++--..-+.
T Consensus       365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i  444 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI  444 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence            222245778888888877543111     112234567888888887643 33444566778888888877754322221


Q ss_pred             CccccchhhhcCCCCCCEEEc
Q 044724          469 CFHLLSIEQINGLSGLSHLIL  489 (782)
Q Consensus       469 ~~~~~~~~~~~~l~~L~~L~L  489 (782)
                      .      ..-.+++++++.-+
T Consensus       445 ~------~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  445 S------RFATHLPNIKVHAY  459 (483)
T ss_pred             H------HHHhhCccceehhh
Confidence            0      22345677766544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.20  E-value=0.00021  Score=82.30  Aligned_cols=135  Identities=24%  Similarity=0.356  Sum_probs=83.6

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCC-cchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN-SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS  173 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~  173 (782)
                      -.+|++||+++...-..    +.....-..||.|+.|.+++-.+.. ..-....++++|+.||+|+.+++ .+  ..+++
T Consensus       121 r~nL~~LdI~G~~~~s~----~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~  193 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN----GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISR  193 (699)
T ss_pred             HHhhhhcCccccchhhc----cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhc
Confidence            35788888877543211    1111123357888888888766643 23344567888888888888887 55  26788


Q ss_pred             CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHH---HhhcCCCCCeEeCCC
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQI---IGESMPSLKHLSLSN  236 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~---l~~~l~~L~~L~L~~  236 (782)
                      +++||.|.+.+=.+.....-..+.+|++|+.||+|.........+...   -+..+|+|+.||.|+
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            888888888776665421123566788888888887433322222221   122378888888887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.20  E-value=1.6e-05  Score=81.81  Aligned_cols=178  Identities=14%  Similarity=0.094  Sum_probs=108.2

Q ss_pred             CCCCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCccc-CCCcccccccccCCCCCCCCEEEccCcc-ccccCCc
Q 044724          320 HKSLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGS-IPSSFEGHMFSKNFNLTNVRWLLLEENH-FVGEIPQ  396 (782)
Q Consensus       320 ~~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~g~~~~~~~~l~~L~~L~L~~n~-l~~~~~~  396 (782)
                      +..+.++++.++ .+++.--..+...+..|+.|+.+++...+. .-.+++.       +..+|++|.++.++ ++..-..
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft  339 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFT  339 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhh
Confidence            445566666565 344332233444467899999988764322 1122221       67899999999886 3332222


Q ss_pred             cc-cCCCCCcEEECcCCcccc--cCCccccCcCCCCEEeCCCCccccCC-----ChhccCCCCCceEeccCCcceeeCCC
Q 044724          397 SL-SKCFLLKGLYLNNNNLSG--KIPQWLGNLTGLQHIIMPKNHLEGPI-----PVEFCQLDWLQILDISDNNISGSLPS  468 (782)
Q Consensus       397 ~l-~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~  468 (782)
                      .+ .+++.|+.+++.++...-  .+...-.+++.|+.+.++++......     ...-+.+..|+.+.+++++....-- 
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-  418 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-  418 (483)
T ss_pred             hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-
Confidence            23 356789999998876531  12222356899999999988643221     2223456789999999998652211 


Q ss_pred             CccccchhhhcCCCCCCEEEcCCCcce--eecCccccCCCCCCEE
Q 044724          469 CFHLLSIEQINGLSGLSHLILAHNNLE--GEVPVQLCGLNQLQLL  511 (782)
Q Consensus       469 ~~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L  511 (782)
                       +     +.+..+++|+.+++-+++-.  ..+...-.+++++++.
T Consensus       419 -L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  419 -L-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             -H-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence             1     56778899999999887632  1222333456666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.19  E-value=0.0012  Score=59.38  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      ++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            445555555553 344444455555656666666553 4434444555555566666644 3333344455556666666


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCC
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL  508 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  508 (782)
                      ++..+ +...-.        ..|.++ +|+.+.+.. .+.......|.++++|
T Consensus        87 ~~~~~-~~~i~~--------~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-ITEIGS--------SSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--BEEHT--------TTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccCcc-ccEEch--------hhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66544 332222        334444 566666554 3332444455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00025  Score=69.19  Aligned_cols=63  Identities=24%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             cCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCC--CCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724           93 TPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN--SFNNSILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      ..+..|+.|++.+..++...        .|-.|++|++|++|.|  ++.+.++.....+++|++|+++.|++.
T Consensus        40 d~~~~le~ls~~n~gltt~~--------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeecc--------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34555555555555544221        1444556666666666  444334333444456666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.11  E-value=0.0014  Score=58.89  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=40.1

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      |.++++|+.+.+.. .+. .++...+..+++|+.+.+..+ +.......|.        ++++++.+.+.+ .+......
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--------~~~~l~~i~~~~-~~~~i~~~   75 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--------NCKSLESITFPN-NLKSIGDN   75 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--------T-TT-EEEEETS-TT-EE-TT
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeee--------cccccccccccc-cccccccc
Confidence            44455566666553 343 444444444445555555443 3322222333        344455555543 22223333


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCC
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL  452 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  452 (782)
                      .|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            4444555555555433 332333344444 455544443 2222333444444433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00021  Score=69.66  Aligned_cols=110  Identities=23%  Similarity=0.394  Sum_probs=63.0

Q ss_pred             CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCC--cCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCC
Q 044724          124 RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYN--RLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKS  201 (782)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  201 (782)
                      .+..|+.|++.+..++.  -..|..+++|++|.+|.|  ++.+.++. ....+++|++|++++|++..+.--..+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34556666666655553  244666777888888888  55555554 44556788888888887764322234556677


Q ss_pred             ccEEecccCcccccccchHHHhhcCCCCCeEeCCC
Q 044724          202 LEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN  236 (782)
Q Consensus       202 L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~  236 (782)
                      |..|++..|...--...-..++.-+++|++|+-..
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            77777776321111111122222267777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00023  Score=69.44  Aligned_cols=64  Identities=33%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc-chhhcCCCCCCCEEEccCCcCc
Q 044724           92 FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS-ILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      ..+++.|++|.||-|+|+..-|        +..|++|+.|.|..|.|... -...+.++++|+.|-|..|.-.
T Consensus        37 c~kMp~lEVLsLSvNkIssL~p--------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLAP--------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HHhcccceeEEeeccccccchh--------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            3455555555555555543322        44555555555555555431 1123444555555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.00042  Score=67.70  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCc
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      +.+.+.|+.-++.++.+.-        ..+++.|++|.||-|.|+.  ...|..|++|+.|+|..|.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsi--------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc
Confidence            3444555555555432210        3345555555555555543  223444555555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.58  E-value=0.0047  Score=36.04  Aligned_cols=12  Identities=50%  Similarity=0.528  Sum_probs=5.1

Q ss_pred             CCEEecCCCccc
Q 044724          633 YRNLDLSYNKLN  644 (782)
Q Consensus       633 L~~LdLs~N~l~  644 (782)
                      |+.|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0057  Score=35.67  Aligned_cols=20  Identities=60%  Similarity=0.928  Sum_probs=10.4

Q ss_pred             cceeecccccccccCCccccC
Q 044724          609 IQILNLSHNNLTGTIPSTFSK  629 (782)
Q Consensus       609 L~~L~Ls~N~l~~~~p~~~~~  629 (782)
                      |++|||++|+|+ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.81  E-value=0.00053  Score=75.57  Aligned_cols=191  Identities=22%  Similarity=0.199  Sum_probs=102.9

Q ss_pred             CcEEEccCCcCCccCChhhhhc---CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc----CC
Q 044724          323 LRLLDVSNNNFQGCIPVEIGDI---LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE----IP  395 (782)
Q Consensus       323 L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~----~~  395 (782)
                      +..|++.+|.+.......+...   .+.|+.|+++.|.+.+..-..+...++.   .-..+++|++..|.+++.    +.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~---~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRL---PQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhccc---chHHHHHHHhhcccccccchHHHH
Confidence            5566666666654433333322   3456666666666652211111111100   114455566666666543    23


Q ss_pred             ccccCCCCCcEEECcCCcccc----cCCcccc----CcCCCCEEeCCCCccccC----CChhccCCCC-CceEeccCCcc
Q 044724          396 QSLSKCFLLKGLYLNNNNLSG----KIPQWLG----NLTGLQHIIMPKNHLEGP----IPVEFCQLDW-LQILDISDNNI  462 (782)
Q Consensus       396 ~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~-L~~L~Ls~N~l  462 (782)
                      ..+.....++.++++.|.+..    .++..+.    ...++++|.+++|.++..    ....+...+. +..+++..|++
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            444556667777777776631    1222222    356777777777776522    1122334444 66688888877


Q ss_pred             eeeCCCCccccchhhhcCC-CCCCEEEcCCCcceeecC----ccccCCCCCCEEEccCCcCCC
Q 044724          463 SGSLPSCFHLLSIEQINGL-SGLSHLILAHNNLEGEVP----VQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       463 ~~~~p~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                      .+..-....    ..+..+ ..+++++++.|.|+....    ..+..++.++++.++.|++..
T Consensus       246 ~d~g~~~L~----~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  246 GDVGVEKLL----PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             chHHHHHHH----HHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            643110000    233444 667888888888875433    344566788888888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.26  E-value=0.0065  Score=58.09  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      ....+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++.+|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            345778999999887 34556788888999999999998 78888999999999999988888 7888999999999999


Q ss_pred             cccCcCc
Q 044724          662 FACNNLS  668 (782)
Q Consensus       662 ls~N~l~  668 (782)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9888764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.10  E-value=0.098  Score=28.23  Aligned_cols=12  Identities=58%  Similarity=0.852  Sum_probs=3.9

Q ss_pred             CCCEEEccCCcC
Q 044724          151 SVRSLKLSYNRL  162 (782)
Q Consensus       151 ~L~~L~Ls~n~l  162 (782)
                      +|++|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.93  E-value=0.16  Score=30.92  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=12.6

Q ss_pred             CCCCEEEccCCcCcCcCChhhh
Q 044724          150 SSVRSLKLSYNRLEGSIDVKEF  171 (782)
Q Consensus       150 ~~L~~L~Ls~n~l~~~ip~~~~  171 (782)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.93  E-value=0.16  Score=30.92  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=12.6

Q ss_pred             CCCCEEEccCCcCcCcCChhhh
Q 044724          150 SSVRSLKLSYNRLEGSIDVKEF  171 (782)
Q Consensus       150 ~~L~~L~Ls~n~l~~~ip~~~~  171 (782)
                      ++|++|+|++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.16  E-value=0.13  Score=27.76  Aligned_cols=11  Identities=64%  Similarity=0.884  Sum_probs=3.6

Q ss_pred             CCEEecCCCcc
Q 044724          633 YRNLDLSYNKL  643 (782)
Q Consensus       633 L~~LdLs~N~l  643 (782)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.34  E-value=0.0098  Score=56.92  Aligned_cols=89  Identities=25%  Similarity=0.304  Sum_probs=75.7

Q ss_pred             cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCC
Q 044724          601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFAT  680 (782)
Q Consensus       601 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  680 (782)
                      ..+......+.||++.|++. -.-..|+-++.|+.||+|.|++. ..|..+..+..+..+++..|+++...-+ +++.+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS-QKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc-ccccCC
Confidence            45667788999999999998 44566888999999999999998 7899999999999999999998865444 888899


Q ss_pred             CCcccccCCCCC
Q 044724          681 FNESSYKGNPFL  692 (782)
Q Consensus       681 l~~~~~~gNp~l  692 (782)
                      ....+..+||+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.71  E-value=0.091  Score=59.19  Aligned_cols=61  Identities=23%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             CCCCCCEEEccCCc-CcCcCChhhhc-CCCCCCEEEcccCC-CCCccCCCCCCCCCCccEEeccc
Q 044724          148 RLSSVRSLKLSYNR-LEGSIDVKEFD-SFNNLEVLDMKRNE-IDNLVVPQGFPHFKSLEHLDMSY  209 (782)
Q Consensus       148 ~l~~L~~L~Ls~n~-l~~~ip~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~  209 (782)
                      .+.+|+.|+++++. ++ ..-...+. .+++|++|.+.++. ++...+-.....+++|++|++++
T Consensus       241 ~~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             hcCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence            34555555555554 22 11111121 24555555544444 33322122233444555555554

>TIGR00864 PCC polycystin cation channel protein

Probab=89.62  E-value=0.2  Score=64.67  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             cccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      |++|+|+...+..+..+.+++.+++.||||.|+|.+
T Consensus         2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L   37 (2740)
T TIGR00864         2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL   37 (2740)
T ss_pred             CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence            344444444343344444455555567777777754

Note: this model has been restricted to the amino half because for technical reasons.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.47  E-value=0.4  Score=29.08  Aligned_cols=14  Identities=50%  Similarity=0.679  Sum_probs=8.6

Q ss_pred             CCCCEEecCCCccc
Q 044724          631 EAYRNLDLSYNKLN  644 (782)
Q Consensus       631 ~~L~~LdLs~N~l~  644 (782)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.47  E-value=0.4  Score=29.08  Aligned_cols=14  Identities=50%  Similarity=0.679  Sum_probs=8.6

Q ss_pred             CCCCEEecCCCccc
Q 044724          631 EAYRNLDLSYNKLN  644 (782)
Q Consensus       631 ~~L~~LdLs~N~l~  644 (782)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666666

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.93  E-value=0.0089  Score=66.02  Aligned_cols=191  Identities=20%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhcC----CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc--
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDIL----PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG--  392 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l----~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~--  392 (782)
                      ..+.|+.|++++|.+.+.--..+.+.+    ..++.|++..|.+++..-..    +...+.....++.++++.|.+..  
T Consensus       113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~----l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP----LAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH----HHHHHhcccchhHHHHHhcccchhh
Confidence            445666677777766533222222222    23455666666665432221    11222245667777777776631  


Q ss_pred             --cCCcccc----CCCCCcEEECcCCcccccC----CccccCcCC-CCEEeCCCCccccC----CChhccCC-CCCceEe
Q 044724          393 --EIPQSLS----KCFLLKGLYLNNNNLSGKI----PQWLGNLTG-LQHIIMPKNHLEGP----IPVEFCQL-DWLQILD  456 (782)
Q Consensus       393 --~~~~~l~----~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~  456 (782)
                        .++..+.    ...++++|.+++|.++...    ...+...+. +..+++..|++.+.    ....+..+ ..++.++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence              1222333    4667888888888876321    122344444 66688888887644    22334444 6778999


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC----ccccCCCCCCEEEccCCc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP----VQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~  517 (782)
                      ++.|.++..-.....    ..+..++.++++.+++|.+.....    ........+..+-+.++.
T Consensus       269 l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~  329 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG  329 (478)
T ss_pred             hhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence            999998865443222    445667789999999998764321    112233445555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.73  E-value=0.17  Score=30.05  Aligned_cols=17  Identities=29%  Similarity=0.374  Sum_probs=8.0

Q ss_pred             CCCCEEecCCCccccCC
Q 044724          631 EAYRNLDLSYNKLNGKI  647 (782)
Q Consensus       631 ~~L~~LdLs~N~l~~~i  647 (782)
                      ++|++|+|++|+|++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            45555666666555433

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.38  E-value=0.51  Score=53.07  Aligned_cols=57  Identities=30%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             CCCCccEEecccCccc-ccccchHHHhhcCCCCCeEeCCCCC--CC------CCCCCCCCeEEccCce
Q 044724          198 HFKSLEHLDMSYAHIA-LNTNFLQIIGESMPSLKHLSLSNFS--PS------NDSWTLNQVLWLSNNH  256 (782)
Q Consensus       198 ~l~~L~~L~L~~n~~~-~~~~~~~~l~~~l~~L~~L~L~~~i--p~------~~~l~~L~~L~Ls~n~  256 (782)
                      .+++|+.|++++  .. ++......+...+++|++|.+....  ..      ...++.|+.|+++.+.
T Consensus       241 ~~~~L~~l~l~~--~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSG--CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhh--hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            345555555555  22 3333334444445555555544311  11      2345556666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	782
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 109/643 (16%)
Query: 124 RLNNLKMFDLSGNSFNNXXXXX---XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVL 180
           +LN+L++ DLS NS +                       N++ G +DV       NLE L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFL 202
Query: 181 DMKRNEIDNLVVPQGFPHF---KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF 237
           D+  N         G P      +L+HLD+S   ++                      +F
Sbjct: 203 DVSSNNFS-----TGIPFLGDCSALQHLDISGNKLS---------------------GDF 236
Query: 238 SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF 297
           S +  + T  ++L +S+N F  PI P PL     L+      N+   EI +  S    T 
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 298 QLKSLSLSSGYGDGP--------------------FRLPIHS---HKSLRLLDVSNNNFQ 334
               LS +  YG  P                      LP+ +    + L++LD+S N F 
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
           G +P  + ++  SL   ++S N   G I  +   +   KN     ++ L L+ N F G+I
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKN----TLQELYLQNNGFTGKI 407
Query: 395 PQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
           P +LS C             SG IP  LG+L+ L+ + +  N LEG IP E   +  L+ 
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 455 LDISDNNISGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEV 498
           L +  N+++G +PS    C +L    LS  ++ G        L  L+ L L++N+  G +
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 499 PVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN----------NNSSLDKPFE-- 546
           P                   +G IP   +  +   + N           N  + K     
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 547 ---ISFDFRNTEKKVEKKSHEIFEFTTK------SNAYTYQGRVLSLLSGIDLSCNKLIG 597
              + F    +E+     +      T++      S  +   G ++ L    D+S N L G
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL----DMSYNMLSG 643
Query: 598 HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAF 657
           +IP  IG++  + ILNL HN+++G+IP     L     LDLS NKL+G+IP+ +  L   
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 658 VVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPIC 700
                + NNLSG IPE+  QF TF  + +  NP LCG PLP C
Sbjct: 704 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 44/430 (10%)
Query: 298 QLKSLSLSSGYGDGPFRL--PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
            L SL LS     GP      + S   L+ L+VS+N       V  G  L SL   ++S 
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXS 415
           N++ G+   +  G + S       ++ L +  N   G++   +S+C             S
Sbjct: 158 NSISGA---NVVGWVLSDGCG--ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 416 GKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475
             IP +LG+ + LQH+ +  N L G           L++L+IS N   G +P        
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL------ 263
Query: 476 EQINGLSGLSHLILAHNNLEGEVP-VXXXXXXXXXXXXXXXXXXHGLIPPFF---YNTAL 531
                L  L +L LA N   GE+P                    +G +PPFF        
Sbjct: 264 ----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 532 HESYNNNSSLDKPFEISFDFRNT---EKKVEKKSHEIFEFTTKSNAY---------TYQG 579
               +NN S + P +     R     +    + S E+ E  T  +A           + G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 580 RVL--------SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
            +L        + L  + L  N   G IPP + N + +  L+LS N L+GTIPS+   L 
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691
             R+L L  N L G+IP++L+ +          N+L+G+IP   +     N  S   N  
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 692 LCGLPLPICR 701
              +P  I R
Sbjct: 500 TGEIPKWIGR 509

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 109/643 (16%)
Query: 124 RLNNLKMFDLSGNSFNNXXXXX---XXXXXXXXXXXXXYNRLEGSIDVKEFDSFNNLEVL 180
           +LN+L++ DLS NS +                       N++ G +DV       NLE L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFL 205
Query: 181 DMKRNEIDNLVVPQGFPHF---KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF 237
           D+  N         G P      +L+HLD+S   ++                      +F
Sbjct: 206 DVSSNNFS-----TGIPFLGDCSALQHLDISGNKLS---------------------GDF 239
Query: 238 SPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF 297
           S +  + T  ++L +S+N F  PI P PL     L+      N+   EI +  S    T 
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 298 QLKSLSLSSGYGDGP--------------------FRLPIHS---HKSLRLLDVSNNNFQ 334
               LS +  YG  P                      LP+ +    + L++LD+S N F 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
           G +P  + ++  SL   ++S N   G I  +   +   KN     ++ L L+ N F G+I
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKN----TLQELYLQNNGFTGKI 410
Query: 395 PQSLSKCFXXXXXXXXXXXXSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
           P +LS C             SG IP  LG+L+ L+ + +  N LEG IP E   +  L+ 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 455 LDISDNNISGSLPS----CFHL----LSIEQING--------LSGLSHLILAHNNLEGEV 498
           L +  N+++G +PS    C +L    LS  ++ G        L  L+ L L++N+  G +
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 499 PVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN----------NNSSLDKPFE-- 546
           P                   +G IP   +  +   + N           N  + K     
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 547 ---ISFDFRNTEKKVEKKSHEIFEFTTK------SNAYTYQGRVLSLLSGIDLSCNKLIG 597
              + F    +E+     +      T++      S  +   G ++ L    D+S N L G
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL----DMSYNMLSG 646
Query: 598 HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAF 657
           +IP  IG++  + ILNL HN+++G+IP     L     LDLS NKL+G+IP+ +  L   
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 658 VVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPIC 700
                + NNLSG IPE+  QF TF  + +  NP LCG PLP C
Sbjct: 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 44/430 (10%)
Query: 298 QLKSLSLSSGYGDGPFRL--PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
            L SL LS     GP      + S   L+ L+VS+N       V  G  L SL   ++S 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFXXXXXXXXXXXXS 415
           N++ G+   +  G + S       ++ L +  N   G++   +S+C             S
Sbjct: 161 NSISGA---NVVGWVLSDGCG--ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 416 GKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475
             IP +LG+ + LQH+ +  N L G           L++L+IS N   G +P        
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL------ 266
Query: 476 EQINGLSGLSHLILAHNNLEGEVP-VXXXXXXXXXXXXXXXXXXHGLIPPFF---YNTAL 531
                L  L +L LA N   GE+P                    +G +PPFF        
Sbjct: 267 ----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 532 HESYNNNSSLDKPFEISFDFRNT---EKKVEKKSHEIFEFTTKSNAY---------TYQG 579
               +NN S + P +     R     +    + S E+ E  T  +A           + G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 580 RVL--------SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
            +L        + L  + L  N   G IPP + N + +  L+LS N L+GTIPS+   L 
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF 691
             R+L L  N L G+IP++L+ +          N+L+G+IP   +     N  S   N  
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 692 LCGLPLPICR 701
              +P  I R
Sbjct: 503 TGEIPKWIGR 512

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 114/307 (37%), Gaps = 86/307 (28%)
Query: 418 IPQWLGNLTGLQHI-IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476
           IP  L NL  L  + I   N+L GPIP    +L  L  L I+  N+SG++P        +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------D 119
Query: 477 QINGLSGLSHLILAHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPFFYNTALHESYN 536
            ++ +  L  L  ++N L G +P                                     
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSI---------------------------------- 145
Query: 537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI 596
             SSL     I+FD       +              ++Y   G    L + + +S N+L 
Sbjct: 146 --SSLPNLVGITFDGNRISGAIP-------------DSY---GSFSKLFTSMTISRNRLT 187
Query: 597 GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN---GKI------ 647
           G IPP   NL  +  ++LS N L G     F   +  + + L+ N L    GK+      
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 648 --------------PRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
                         P+ L +L      + + NNL G+IP+       F+ S+Y  N  LC
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305
Query: 694 GLPLPIC 700
           G PLP C
Sbjct: 306 GSPLPAC 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	782
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-102
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  360 bits (927), Expect = e-113
 Identities = 160/628 (25%), Positives = 246/628 (39%), Gaps = 100/628 (15%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
              LE L +S+NN +  +         +   + L+  D+SGN  +     +++  + ++ 
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L +S N+  G I         +L+ L +  N+    +         +L  LD+S  H   
Sbjct: 252 LNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--F 306

Query: 215 NTNFLQIIGESMPSLKHLSLS--NFS---PSNDSWTLN--QVLWLSNNHFRIPISPDPLF 267
                   G S   L+ L+LS  NFS   P +    +   +VL LS N F   + P+ L 
Sbjct: 307 YGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLT 364

Query: 268 N-HSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLL 326
           N  + L      +N     I  +         L+ L L +    G     + +   L  L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE 386
            +S N   G IP  +G  L  L    + +N L+G IP             +  +  L+L+
Sbjct: 424 HLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQEL--------MYVKTLETLILD 474

Query: 387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEF 446
            N   GEIP  LS C  L  + L+NN L+G+IP+W+G L  L  + +  N   G IP E 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 447 CQLDWLQILDISDNNISGSLPSCF-HLLSIEQINGLSG-------------LSHLILAHN 492
                L  LD++ N  +G++P+           N ++G               H      
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 493 NLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR 552
             +G    QL  L+     +++     G   P F N                        
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN------------------------ 630

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                                           +  +D+S N L G+IP  IG++  + IL
Sbjct: 631 -----------------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672
           NL HN+++G+IP     L     LDLS NKL+G+IP+ +  L        + NNLSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 673 ELTAQFATFNESSYKGNPFLCGLPLPIC 700
           E   QF TF  + +  NP LCG PLP C
Sbjct: 722 E-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  332 bits (854), Expect = e-102
 Identities = 169/672 (25%), Positives = 258/672 (38%), Gaps = 140/672 (20%)

Query: 19  GCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTR 78
             L  E   L+  K    D  N L DW       + C +  V C +   +V  + LS+ +
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRD--DKVTSIDLSS-K 60

Query: 79  SMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSF 138
            + +    +++ L      LESL LS ++I G V              +L   DLS NS 
Sbjct: 61  PLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVSGFK-------CSASLTSLDLSRNSL 112

Query: 139 NNSI--LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVP--Q 194
           +  +  L+SL   S ++ L +S N L+    V      N+LEVLD+  N I    V    
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 195 GFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLS--NFS---PSNDSWT 245
                  L+HL +S        N +   G+       +L+ L +S  NFS   P     +
Sbjct: 173 LSDGCGELKHLAISG-------NKIS--GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 223

Query: 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS 305
             Q L +S N          +   + LK+ +  +N+    I        P   LKSL   
Sbjct: 224 ALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPI--------PPLPLKSL--- 271

Query: 306 SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS 365
                             + L ++ N F G IP  +     +L+  ++S N   G++P  
Sbjct: 272 ------------------QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEIP-QSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
           F         + + +  L L  N+F GE+P  +L K   LK L L+ N  SG++P+ L N
Sbjct: 314 F--------GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 425 LTG-LQHIIMPKNHLEGPIPVEFCQLDW--LQILDISDNNISGSLPSCFHLLSIEQINGL 481
           L+  L  + +  N+  GPI    CQ     LQ L + +N  +G +P          ++  
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP--------TLSNC 417

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSL 541
           S L  L L+ N L G +P  L  L++L+ L L  N L G IP                  
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------------- 464

Query: 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
                                                   +  L  + L  N L G IP 
Sbjct: 465 ----------------------------------------VKTLETLILDFNDLTGEIPS 484

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
            + N T +  ++LS+N LTG IP    +LE    L LS N  +G IP +L +  + +   
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 662 FACNNLSGKIPE 673
              N  +G IP 
Sbjct: 545 LNTNLFNGTIPA 556

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  179 bits (457), Expect = 2e-47
 Identities = 97/430 (22%), Positives = 154/430 (35%), Gaps = 92/430 (21%)

Query: 91  LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLS 150
           L      L +L LS+NN +G +      +      N L+   L  N F   I  +L+  S
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNP----KNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV--VPQGFPHFKSLEHLDMS 208
            + SL LS+N L G+I      S + L  L +  N    L   +PQ   + K+LE L + 
Sbjct: 419 ELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLN---MLEGEIPQELMYVKTLETLILD 474

Query: 209 YAHIALNTNFLQ-IIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLF 267
           +       N L   I   + +  +L                 + LSNN     I P  + 
Sbjct: 475 F-------NDLTGEIPSGLSNCTNL---------------NWISLSNNRLTGEI-PKWIG 511

Query: 268 NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLD 327
               L I    NN     I                              +   +SL  LD
Sbjct: 512 RLENLAILKLSNNSFSGNIPAE---------------------------LGDCRSLIWLD 544

Query: 328 VSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS------------------SFEGH 369
           ++ N F G IP  +           I+ N + G                       F+G 
Sbjct: 545 LNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 370 MFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQ 429
              +   L+      +    + G    +      +  L ++ N LSG IP+ +G++  L 
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 430 HIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
            + +  N + G IP E   L  L ILD+S N + G +P          ++ L+ L+ + L
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--------AMSALTMLTEIDL 711

Query: 490 AHNNLEGEVP 499
           ++NNL G +P
Sbjct: 712 SNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 4e-19
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 37/198 (18%)

Query: 484 LSHLILAHNNLE---GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSS 540
           ++ + L+   L      V   L  L  L+ L LS+++++G +  F  + +L     + +S
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP 600
           L  P        +                             S L  +++S N L     
Sbjct: 112 LSGPVTTLTSLGS----------------------------CSGLKFLNVSSNTLDFPGK 143

Query: 601 PPIG-NLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL---DLSYNKLNGKIPRQLVELNA 656
              G  L  +++L+LS N+++G     +   +    L    +S NK++G +   +     
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201

Query: 657 FVVFSFACNNLSGKIPEL 674
                 + NN S  IP L
Sbjct: 202 LEFLDVSSNNFSTGIPFL 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (541), Expect = 1e-62
 Identities = 84/378 (22%), Positives = 135/378 (35%), Gaps = 99/378 (26%)

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS--IPSSFEGHMFSKNFNLTNVRWL 383
            D  N  + G +          ++  ++S   L     IPSS          NL  + +L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSL--------ANLPYLNFL 81

Query: 384 -LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI 442
            +   N+ VG IP +++K   L  LY+ + N+SG IP +L  +  L  +    N L G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 443 PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL 502
           P     L  L  +    N ISG++P  +   S          + + ++ N L G++P   
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------KLFTSMTISRNRLTGKIPPTF 194

Query: 503 CGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562
             LN L  +DLS N L G     F +                                  
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------- 219

Query: 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT 622
                                    I L+ N L   +   +G    +  L+L +N + GT
Sbjct: 220 -------------------DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT 259

Query: 623 IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFN 682
           +P   ++L+   +L++S+N L G+IP+                               F+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------------------GGNLQRFD 294

Query: 683 ESSYKGNPFLCGLPLPIC 700
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  172 bits (438), Expect = 3e-48
 Identities = 70/284 (24%), Positives = 109/284 (38%), Gaps = 23/284 (8%)

Query: 261 ISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYG-DGPFRLPIHS 319
           +  D      R+         +        SL    + L  L +       GP    I  
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAK 99

Query: 320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTN 379
              L  L +++ N  G IP  +   + +L   + S NAL G++P S          +L N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSI--------SSLPN 150

Query: 380 VRWLLLEENHFVGEIPQSLSKCF-LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHL 438
           +  +  + N   G IP S      L   + ++ N L+GKIP    NL  L  + + +N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 439 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV 498
           EG   V F      Q + ++ N+++  L           +     L+ L L +N + G +
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------VGLSKNLNGLDLRNNRIYGTL 260

Query: 499 PVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL-HESYNNNSSL 541
           P  L  L  L  L++S NNL G IP           +Y NN  L
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (311), Expect = 4e-31
 Identities = 83/424 (19%), Positives = 129/424 (30%), Gaps = 138/424 (32%)

Query: 18  EGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQ--WANVECNNTT--GRVIQLY 73
           E C   ++ ALLQ+K    +P   L  W      TDCC   W  V C+  T   RV  L 
Sbjct: 1   ELCNPQDKQALLQIKKDLGNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 74  LSNTRSMELEEWYLNAYLFTP-----FQQLESLSLS-ANNIAGCVENEGASSREVTRLNN 127
           LS           L      P        L  L +   NN+ G +         + +L  
Sbjct: 57  LSGLN--------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPI------PPAIAKLTQ 102

Query: 128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEI 187
           L    ++  + + +I   L+++ ++ +L  SYN L G++                     
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--------------------- 141

Query: 188 DNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN 247
                P       +L  +           N +   G ++P     S  +FS       L 
Sbjct: 142 -----PPSISSLPNLVGITFDG-------NRIS--G-AIPD----SYGSFS------KLF 176

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
             + +S N     I P    N                              L  + LS  
Sbjct: 177 TSMTISRNRLTGKI-PPTFAN----------------------------LNLAFVDLS-- 205

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                                  N  +G   V  G    +    +++ N+L   +     
Sbjct: 206 ----------------------RNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGKV-- 240

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
                      N+  L L  N   G +PQ L++   L  L ++ NNL G+IPQ  GNL  
Sbjct: 241 -------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292

Query: 428 LQHI 431
               
Sbjct: 293 FDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (262), Expect = 9e-25
 Identities = 46/228 (20%), Positives = 73/228 (32%), Gaps = 65/228 (28%)

Query: 450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE--VPVQLCGLNQ 507
            WL   D  +    G L                 +++L L+  NL     +P  L  L  
Sbjct: 26  SWLPTTDCCNRTWLGVLCD--------TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 508 LQLLDLSD-NNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           L  L +   NNL G IPP                                          
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAK-------------------------------------- 99

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPST 626
                          L+ L  + ++   + G IP  +  +  +  L+ S+N L+GT+P +
Sbjct: 100 ---------------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 627 FSKLEAYRNLDLSYNKLNGKIPRQLVEL-NAFVVFSFACNNLSGKIPE 673
            S L     +    N+++G IP         F   + + N L+GKIP 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  220 bits (563), Expect = 4e-62
 Identities = 119/642 (18%), Positives = 212/642 (33%), Gaps = 94/642 (14%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           L+   F     L  L L +N+I      +   +    +  NL   DLS N  +++ L + 
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSI------QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNN--LEVLDMKRNEIDNLVVPQGFPHFKSLEH 204
            +L +++ L LS N+++     +E D F N  L+ L++  N+I     P  F     L  
Sbjct: 142 VQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFG 199

Query: 205 LDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS----PSNDSWTLN----QVLWLSNNH 256
           L ++   +  +      +  +  S+++LSLSN       +     L      +L LS N+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 257 FRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP 316
             + +  D      +L+ F    N I              F ++ L+L            
Sbjct: 260 LNV-VGNDSFAWLPQLEYFFLEYNNIQ---HLFSHSLHGLFNVRYLNLKR---------- 305

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
                S     +S  +            L  L   N+  N + G   + F          
Sbjct: 306 -----SFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFT--------G 351

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFL----LKGLYLNNNNLSGKIPQWLGNLTGLQHII 432
           L N+++L L  +        + +   L    L  L L  N +S         L  L+ + 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 433 MPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
           +  N +   +   E+  L+ +  + +S N       + F          +  L  L+L  
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA--------LVPSLQRLMLRR 463

Query: 492 NNLEG--EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPF 545
             L+     P     L  L +LDLS+NN+  +             L   +NN + L K  
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK-- 521

Query: 546 EISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN 605
                                          Y  + LS L  ++L  N           +
Sbjct: 522 -----------------------HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQL-VELNAFVVFSFAC 664
           L  ++I++L  NNL     S F+   + ++L+L  N +     +                
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 665 NNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPATM 706
           N        + A F  +   ++   P L    L  C +P   
Sbjct: 619 NPFDCTCESI-AWFVNWINETHTNIPELSSHYL--CNTPPHY 657

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (547), Expect = 6e-60
 Identities = 119/610 (19%), Positives = 197/610 (32%), Gaps = 84/610 (13%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
              +  L+L+ N +          +   TR + L   D+  N+ +        +L  ++ 
Sbjct: 24  PTNITVLNLTHNQL------RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L L +N L    D K F    NL  L +  N I  +     F   K+L  LD+S+  +  
Sbjct: 78  LNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGL-- 133

Query: 215 NTNFLQIIGESMPSLKHLSLSN--------FSPSNDSWTLNQVLWLSNNHFRIPISPDPL 266
            ++        + +L+ L LSN              + +  + L LS+N  +   SP   
Sbjct: 134 -SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCF 191

Query: 267 FNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS----SGYGDGPFRLPIHSHKS 322
               RL      N ++   +TE   L      +++LSLS    S   +  F        +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG--LKWTN 249

Query: 323 LRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT-NVR 381
           L +LD+S NN            LP L  F +  N +      S  G    +  NL  +  
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP 441
              +           S      L+ L + +N++ G        L  L+++ +  +     
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 442 IPVE----FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE 497
                         L IL+++ N IS      F          L  L  L L  N +  E
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFS--------WLGHLEVLDLGLNEIGQE 420

Query: 498 VPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFR 552
           +  Q   GL  +  + LS N    L    F        L        ++D        F+
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS---SPSPFQ 477

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                                        L  L+ +DLS N +       +  L +++IL
Sbjct: 478 P----------------------------LRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 613 NLSHNNLT--------GTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC 664
           +L HNNL         G        L     L+L  N  +        +L    +     
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 665 NNLSGKIPEL 674
           NNL+     +
Sbjct: 570 NNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (532), Expect = 6e-58
 Identities = 125/658 (18%), Positives = 202/658 (30%), Gaps = 119/658 (18%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           L A  FT + QL SL +  N I               +L  LK+ +L  N  +     + 
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTI------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
              +++  L L  N ++   +   F    NL  LD+  N + +          ++L+ L 
Sbjct: 94  AFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELL 151

Query: 207 MSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPL 266
           +S      N     +  E +    + SL             + L LS+N  +   SP   
Sbjct: 152 LS------NNKIQALKSEELDIFANSSL-------------KKLELSSNQIKE-FSPGCF 191

Query: 267 FNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS----SGYGDGPFRLPIHSHKS 322
               RL      N ++   +TE   L      +++LSLS    S   +  F        +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG--LKWTN 249

Query: 323 LRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG-------------- 368
           L +LD+S NN            LP L  F +  N +      S  G              
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 369 -HMFSKNF----------NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK 417
               S              L  +  L +E+N   G      +    LK L L+N+  S +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 418 IPQWLG----NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
                       + L  + + KN +       F  L  L++LD+  N I   L       
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG----- 423

Query: 474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL--IPPFFYN-TA 530
             ++  GL  +  + L++N            +  LQ L L    L  +   P  F     
Sbjct: 424 --QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 531 LHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG 587
           L     S NN ++++                                       L  L  
Sbjct: 482 LTILDLSNNNIANINDDM-----LEG----------------------------LEKLEI 508

Query: 588 IDLSCNKL--------IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
           +DL  N L         G     +  L+ + ILNL  N         F  L   + +DL 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 640 YNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSY-KGNPFLCGLP 696
            N LN           +    +   N ++    ++             + NPF C   
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (386), Expect = 1e-38
 Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 47/339 (13%)

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
           ++P     ++ +L++++N  +             L+  ++  N +    P   +      
Sbjct: 18  QVPDDLPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQ------ 70

Query: 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM 433
              L  ++ L L+ N       ++ + C  L  L+L +N++             L  + +
Sbjct: 71  --KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             N L         QL+ LQ L +S+N I         +         S L  L L+ N 
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF------ANSSLKKLELSSNQ 182

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP----FFYNTALHESYNNNSSLDKPFEISF 549
           ++   P     + +L  L L++  L   +         NT++     +NS L        
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-------- 234

Query: 550 DFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI 609
                               + ++  T+ G   + L+ +DLS N L          L ++
Sbjct: 235 --------------------STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648
           +   L +NN+      +   L   R L+L  +     I 
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 36/223 (16%), Positives = 62/223 (27%), Gaps = 64/223 (28%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
            ++ D S   ++  +P              + ++ L L HN L           +QL  L
Sbjct: 6   HEVADCSHLKLT-QVPDDL----------PTNITVLNLTHNQLRRLPAANFTRYSQLTSL 54

Query: 512 DLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK 571
           D+  N +  L P                                                
Sbjct: 55  DVGFNTISKLEPELCQK------------------------------------------- 71

Query: 572 SNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
                     L +L  ++L  N+L           T +  L+L  N++     + F K +
Sbjct: 72  ----------LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPEL 674
               LDLS+N L+       V+L        + N +     E 
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  205 bits (523), Expect = 3e-57
 Identities = 108/595 (18%), Positives = 189/595 (31%), Gaps = 96/595 (16%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSS 151
           F  F +L+ L LS   I      +         L++L    L+GN   +  L + + LSS
Sbjct: 48  FFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 152 VRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH 211
           ++ L      L    +         L+ L++  N I +  +P+ F +  +LEHLD+S   
Sbjct: 102 LQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS--- 157

Query: 212 IALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR 271
              +     I    +  L  + L N S           L LS N   +       F   R
Sbjct: 158 ---SNKIQSIYCTDLRVLHQMPLLNLS-----------LDLSLNP--MNFIQPGAFKEIR 201

Query: 272 LKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSH-KSLRLLDVSN 330
           L      NN     + ++        ++  L L     +G       S  + L  L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 331 NNFQGC-----IPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
                        +++ + L ++S F++    ++     S+              + L L
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----------NFGWQHLEL 311

Query: 386 EENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHL--EGPIP 443
               F            L     L   +  G       +L  L+ + + +N L  +G   
Sbjct: 312 VNCKF-----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 444 VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-L 502
                   L+ LD+S N +     +   L           L HL   H+NL+        
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ---------LEHLDFQHSNLKQMSEFSVF 417

Query: 503 CGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKV 558
             L  L  LD+S  +        F        L  + N+      P   +          
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------- 468

Query: 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN 618
                                  L  L+ +DLS  +L    P    +L+ +Q+LN+SHNN
Sbjct: 469 -----------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 619 LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAF-VVFSFACNNLSGKIP 672
                   +  L + + LD S N +     ++L    +     +   N+ +    
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (468), Expect = 8e-50
 Identities = 99/557 (17%), Positives = 171/557 (30%), Gaps = 81/557 (14%)

Query: 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
            + K  DLS N   +    S      ++ L LS   ++   D   + S ++L  L +  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 186 EIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWT 245
            I +L     F    SL+ L          TN   +    +  LK L             
Sbjct: 87  PIQSL-ALGAFSGLSSLQKLVAV------ETNLASLENFPIGHLKTL------------- 126

Query: 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES-HSLTAPTFQLKSLSL 304
             + L +++N  +    P+   N + L+     +N+I +        L        SL L
Sbjct: 127 --KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 305 S----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG 360
           S    +    G F+        L  L + NN     +       L  L    + +     
Sbjct: 185 SLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 361 SIP-SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP 419
                 F+        NLT   + L   ++++ +I    +    +    L +  +     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN 479
                  G QH+ +          ++   L  L        N    +             
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------------- 344

Query: 480 GLSGLSHLILAHNNL--EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN 537
            L  L  L L+ N L  +G       G   L+ LDLS N +  +   F     L      
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIG 597
           +S+L +  E S  F +                            L  L  +D+S      
Sbjct: 405 HSNLKQMSEFSV-FLS----------------------------LRNLIYLDISHTHTRV 435

Query: 598 HIPPPIGNLTRIQILNLSHNNLTGTI-PSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNA 656
                   L+ +++L ++ N+      P  F++L     LDLS  +L    P     L++
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 657 FVVFSFACNNLSGKIPE 673
             V + + NN       
Sbjct: 496 LQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (439), Expect = 7e-46
 Identities = 92/557 (16%), Positives = 166/557 (29%), Gaps = 106/557 (19%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSS 151
               + L+ L+++ N I              + L NL+  DLS N   +   + L  L  
Sbjct: 120 IGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 152 VRSLKLSYNRLEGSIDVKEFDSFN--NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
           +  L LS +     ++  +  +F    L  L ++ N     V+         LE   +  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 210 AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN------------QVLWLSNNHF 257
                  N  +    ++  L +L++  F  +   + L+                L +   
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 258 RIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPI 317
                      +   +     N +           T     LK L+ +S  G   F    
Sbjct: 295 E---RVKDFSYNFGWQHLELVNCKF------GQFPTLKLKSLKRLTFTSNKGGNAF--SE 343

Query: 318 HSHKSLRLLDVSNN--NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
               SL  LD+S N  +F+GC          SL   ++S N +  ++ S+F         
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGV-ITMSSNF--------L 393

Query: 376 NLTNVRWLLLEENHFVGEIPQS-LSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP 434
            L  +  L  + ++       S       L  L +++ +           L+ L+ + M 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 435 KNHLEGPI-PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
            N  +    P  F +L  L  LD+S   +    P+ F+         LS L  L ++HNN
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--------SLSSLQVLNMSHNN 505

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553
                      LN LQ+LD S N++                                   
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--------------------------- 538

Query: 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP--IGNLTRIQI 611
                                        S L+ ++L+ N           +  +   + 
Sbjct: 539 -------------------------QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 612 LNLSHNNLTGTIPSTFS 628
           L +    +    PS   
Sbjct: 574 LLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (395), Expect = 4e-40
 Identities = 78/466 (16%), Positives = 142/466 (30%), Gaps = 54/466 (11%)

Query: 86  YLNAYLFTPFQQLE----SLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS 141
            +         Q+     SL LS N +               +   L    L  N  + +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-------IQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 142 ILS-SLTRLSSVRSLKLSYNRLEGSIDVKEFD--SFNNLEVLDMKRNEIDNL-----VVP 193
           ++   +  L+ +   +L         ++++FD  +   L  L ++   +  L      + 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 194 QGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSN-DSWTLNQVLWL 252
             F    ++    +    I    +F           +HL L N       +  L  +  L
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSY-----NFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 253 SNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS----SGY 308
           +    +   +     +   L+      N +  +   S S    T  LK L LS       
Sbjct: 331 TFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITM 388

Query: 309 GDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG 368
                 L       L  LD  ++N +      +   L +L   +IS      +    F  
Sbjct: 389 SSNFLGLE-----QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN- 442

Query: 369 HMFSKNFNLTNVRWLLLEENHFVGEI-PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
                   L+++  L +  N F     P   ++   L  L L+   L    P    +L+ 
Sbjct: 443 -------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
           LQ + M  N+        +  L+ LQ+LD S N+I  S                S L+ L
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-------PSSLAFL 548

Query: 488 ILAHNNLEGEVPVQ--LCGLNQLQLLDLSDNNLHGLIPPFFYNTAL 531
            L  N+       Q  L  +   + L +    +    P       +
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  142 bits (359), Expect = 2e-35
 Identities = 87/504 (17%), Positives = 153/504 (30%), Gaps = 73/504 (14%)

Query: 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLS 233
             + + LD+  N + +L     F  F  L+ LD+S            I   +  SL HL 
Sbjct: 27  PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLS------RCEIQTIEDGAYQSLSHL- 78

Query: 234 LSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
                           L L+ N  +  ++       S L+   A    + +         
Sbjct: 79  --------------STLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFP---- 119

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
                                  I   K+L+ L+V++N  Q     E    L +L   ++
Sbjct: 120 -----------------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S N +     +           NL+    L L  N      P +  K   L  L L NN 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS----LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNF 211

Query: 414 LSGKIPQ-WLGNLTGLQHIIMPKNHLEGPIPVE---FCQLDWLQILDISDNNISGSLPSC 469
            S  + +  +  L GL+   +          +E      L+ L  L I +  ++      
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL--DY 269

Query: 470 FHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNT 529
           +    I+  N L+ +S   L    +E             Q L+L +            + 
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS- 326

Query: 530 ALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGID 589
            L      ++     F            + +         ++S+         + L  +D
Sbjct: 327 -LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG------TTSLKYLD 379

Query: 590 LSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP-STFSKLEAYRNLDLSYNKLNGKIP 648
           LS N +I  +      L +++ L+  H+NL      S F  L     LD+S+        
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 649 RQLVELNAFVVFSFACNNLSGKIP 672
                L++  V   A N+      
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (358), Expect = 2e-35
 Identities = 78/440 (17%), Positives = 135/440 (30%), Gaps = 43/440 (9%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES-HSLTAPTFQLKSLSLSS 306
           + L LS N  R  +     F+   L++      EI      +  SL+     L +L L+ 
Sbjct: 31  KNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS----HLSTLILTG 85

Query: 307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG-SIPSS 365
                          SL+ L     N        IG  L +L   N++ N +    +P  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEY 144

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC----FLLKGLYLNNNNLSGKIPQW 421
           F         NLTN+  L L  N         L        L   L L+ N ++   P  
Sbjct: 145 FS--------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQ-LDWLQILDISDNNISGSLPSCFHLLSIEQING 480
              +  L  + +  N     +     Q L  L++  +                    + G
Sbjct: 197 FKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEG 253

Query: 481 LSGLSHLILAHNNLE---GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN 537
           L  L+        L+    ++      L  +    L    +   +  F YN         
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELV 312

Query: 538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL-- 595
           N       +       + K++   S++     ++ +        L  L  +DLS N L  
Sbjct: 313 NCKFG---QFPTLKLKSLKRLTFTSNKGGNAFSEVD--------LPSLEFLDLSRNGLSF 361

Query: 596 IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ-LVEL 654
            G         T ++ L+LS N +  T+ S F  LE   +LD  ++ L         + L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 655 NAFVVFSFACNNLSGKIPEL 674
              +    +  +       +
Sbjct: 421 RNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 1e-20
 Identities = 62/340 (18%), Positives = 109/340 (32%), Gaps = 44/340 (12%)

Query: 63  NNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREV 122
                     Y    + +EL       +     + L+ L+ ++N                
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD------ 345

Query: 123 TRLNNLKMFDLSGN--SFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180
             L +L+  DLS N  SF      S    +S++ L LS+N +        F     LE L
Sbjct: 346 --LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQLEHL 401

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240
           D + + +  +     F   ++L +LD+S      +T+           L  L        
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDIS------HTHTRVAFNGIFNGLSSL-------- 447

Query: 241 NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES-HSLTAPTFQL 299
                  +VL ++ N F+    PD       L        ++      + +SL+     L
Sbjct: 448 -------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----SL 496

Query: 300 KSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD 359
           + L++S          P     SL++LD S N+       E+     SL+  N++ N   
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 360 GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS 399
            +         F +         LL+E        P    
Sbjct: 557 CTCEHQS----FLQWIKDQRQ--LLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 5e-18
 Identities = 41/228 (17%), Positives = 64/228 (28%), Gaps = 66/228 (28%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
            + LD+S N +       F             L  L L+   ++         L+ L  L
Sbjct: 30  TKNLDLSFNPLRHLGSYSF--------FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 512 DLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK 571
            L+ N +  L    F                                             
Sbjct: 82  ILTGNPIQSLALGAFSG------------------------------------------- 98

Query: 572 SNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT-IPSTFSKL 630
                     LS L  +      L      PIG+L  ++ LN++HN +    +P  FS L
Sbjct: 99  ----------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 631 EAYRNLDLSYNKLNGKIPRQLVEL----NAFVVFSFACNNLSGKIPEL 674
               +LDLS NK+       L  L       +    + N ++   P  
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 13/73 (17%), Positives = 21/73 (28%)

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
           P       + L+LS N L      +F      + LDLS  ++          L+      
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 662 FACNNLSGKIPEL 674
              N +       
Sbjct: 83  LTGNPIQSLALGA 95

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (520), Expect = 2e-56
 Identities = 79/645 (12%), Positives = 169/645 (26%), Gaps = 112/645 (17%)

Query: 52  TDCCQWAN---VECNNTTGRVIQLYLSNTRSMELEEWYLNAYL---FTPFQQLESLSLSA 105
            +   W     V  N+  GRV  L L             +  +        +LE L+L +
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSLEGFG--------ASGRVPDAIGQLTELEVLALGS 114

Query: 106 NNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRL--SSVRSLKLSYNRLE 163
           +         G     ++   + +        +  + +    R   S +    ++ +  +
Sbjct: 115 HGEKVNERLFGPK--GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 164 GSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIG 223
            SI  K          +    N I  +   +       L    M       N+ F+    
Sbjct: 173 KSIK-KSSRITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMG------NSPFVAENI 223

Query: 224 ESMPSLKHLSLSNFSPSNDSWTLN----QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYN 279
                 ++   +    + D    N      + + N      + P  L     +++ +   
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVAC 282

Query: 280 NEIHAEITESHSLTAPTF-----QLKSLSLSSGY-GDGPFRLPIHSHKSLRLLDVSNNNF 333
           N   +         A        +++ + +        P    +   K L +L+   N  
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 334 QGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE 393
           +G +P   G     L+  N++ N +   IP++F G           V  L    N     
Sbjct: 343 EGKLP-AFGS-EIKLASLNLAYNQITE-IPANFCG-------FTEQVENLSFAHNKL-KY 391

Query: 394 IPQSLSKCFL--LKGLYLNNNNLSG-------KIPQWLGNLTGLQHIIMPKNHLEGPIPV 444
           IP       +  +  +  + N +          +         +  I +  N +      
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 445 EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG-EVPVQLC 503
            F     L  +++  N ++  +P        E       L+ + L  N L       +  
Sbjct: 452 LFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSH 563
            L  L  +DLS N+          ++ L                                
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTL-------------------------------- 538

Query: 564 EIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTI 623
                           +   + +  D   N+ +   P  I     +  L +  N++    
Sbjct: 539 ----------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 624 PSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
                 +     LD+  N         +       ++    +   
Sbjct: 583 EKITPNIS---VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (508), Expect = 5e-55
 Identities = 78/572 (13%), Positives = 178/572 (31%), Gaps = 89/572 (15%)

Query: 124 RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMK 183
               +    L G   +  +  ++ +L+ +  L L  +  + +  +      +     + K
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 184 RNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDS 243
           +    +        +    +  D+    I  +     I          ++L         
Sbjct: 139 QKMRMHY-QKTFVDYDPREDFSDLIKDCINSDPQQKSI-----KKSSRITLK-------- 184

Query: 244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS 303
               Q+  LSNN   +  +   +   ++L+ F+  N+   AE           ++ ++  
Sbjct: 185 --DTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVAENICE------AWENENSE 233

Query: 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP 363
            +  Y      L   + K L  ++V N      +P  +   LP +   N++ N       
Sbjct: 234 YAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQ 290

Query: 364 SSFEGHMFSKNFNLTNVRWLLLEENHF-VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWL 422
              +    +       ++ + +  N+     +  SL K   L  L    N L GK+P   
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-F 349

Query: 423 GNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482
           G+   L  + +  N +           + ++ L  + N +   +P+ F          +S
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF------DAKSVS 402

Query: 483 GLSHLILAHNNLEG-------EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHE- 533
            +S +  ++N +          +         +  ++LS+N +       F   + L   
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 534 --SYNNNSSL--DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGID 589
               N  + +  +   + + +F+N                              LL+ ID
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKN----------------------------TYLLTSID 494

Query: 590 LSCNKLIGHIPPPI--GNLTRIQILNLSHNNLTGTIPSTFSK------LEAYRNLDLSYN 641
           L  NKL   +        L  +  ++LS+N+ +   P+                 D   N
Sbjct: 495 LRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673
           +   + P  +    +        N++   + E
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (415), Expect = 1e-42
 Identities = 59/457 (12%), Positives = 122/457 (26%), Gaps = 87/457 (19%)

Query: 248 QVLWLSNNHFRIPIS---PDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
           +VL L ++  ++      P  +  +   +              +          L    +
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED-FSDLIKDCI 166

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
           +S       +           +   +NN    +   +   L  L  F +  +        
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENIC 224

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
                                E                 L  + + N     K+P +L  
Sbjct: 225 EA-------------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 425 LTGLQHIIMPKNHL--------EGPIPVEFCQLDWLQILDISDNNI-SGSLPSCFHLLSI 475
           L  +Q I +  N          +     +    + +QI+ I  NN+ +  + +       
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS------ 325

Query: 476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TAL 531
             +  +  L  L   +N LEG++P       +L  L+L+ N +  +   F         L
Sbjct: 326 --LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLS 591
             ++N    +   F+                                   +S++S ID S
Sbjct: 383 SFAHNKLKYIPNIFDAKS--------------------------------VSVMSAIDFS 410

Query: 592 CNKL-------IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
            N++          + P       +  +NLS+N ++      FS      +++L  N L 
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 645 G-------KIPRQLVELNAFVVFSFACNNLSGKIPEL 674
                                      N L+    + 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  156 bits (397), Expect = 2e-40
 Identities = 61/466 (13%), Positives = 130/466 (27%), Gaps = 77/466 (16%)

Query: 231 HLSLSNFSPSNDSWTLN-----------QVLWLSNNHFRIPISPDPLFNHSRLKIFH-AY 278
             +  NF+   D W                L L        +    +   + L++     
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGS 114

Query: 279 NNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF--RLPIHSHKSLRLLDVSNNNFQGC 336
           + E   E        +     +       +    F    P      L    ++++  Q  
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 337 IPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ 396
           I      I    +      N +   +  +           LT +R   +  + FV E   
Sbjct: 175 IKKSSR-ITLKDTQIGQLSNNI-TFVSKAV--------MRLTKLRQFYMGNSPFVAENI- 223

Query: 397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD 456
               C   +                  NL  L  + +        +P     L  +Q+++
Sbjct: 224 ----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL-EGEVPVQLCGLNQLQLLDLSD 515
           ++ N             ++        +  + + +NNL    V   L  + +L +L+   
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 516 NNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKS 572
           N L G +P F     L     +YN  + +                          FT + 
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPA--------------------NFCGFTEQ- 378

Query: 573 NAYTYQGRVLSLLSGIDLSCNKLIGHIPPP--IGNLTRIQILNLSHNNLTGTIPSTFSKL 630
                       +  +  + NKL  +IP      +++ +  ++ S+N +       F  L
Sbjct: 379 ------------VENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 631 EAY-------RNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSG 669
           +          +++LS N+++          +     +   N L+ 
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  151 bits (383), Expect = 2e-38
 Identities = 68/483 (14%), Positives = 138/483 (28%), Gaps = 99/483 (20%)

Query: 96  QQLESLSLSANNIAGCVENEGASSR-------------EVTRLNNLKMFDLSGNSFNNSI 142
            +L    +  +        E   +              +   L +L   ++        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 143 LSSLTRLSSVRSLKLSYNRLEGSIDVK-------EFDSFNNLEVLDMKRNEIDNLVVPQG 195
            + L  L  ++ + ++ NR      +K       +      ++++ +  N +    V   
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 196 FPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNN 255
               K L  L+  Y       N L+    +  S   L                 L L+ N
Sbjct: 326 LQKMKKLGMLECLY-------NQLEGKLPAFGSEIKL---------------ASLNLAYN 363

Query: 256 HF-RIPISPDPLFNHSR-LKIFHAYNNEIHA--EITESHSLTAPTFQLKSLSLS----SG 307
               IP +       +  ++     +N++     I ++ S++     + ++  S      
Sbjct: 364 QITEIPAN---FCGFTEQVENLSFAHNKLKYIPNIFDAKSVS----VMSAIDFSYNEIGS 416

Query: 308 YGDGPFR-LP--IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
                F  L        ++  +++SNN      P E+      LS  N+  N L   IP 
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTE-IPK 474

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL--LKGLYLNNNNLSGKIPQWL 422
           +          N   +  + L  N     +        L  L G+ L+ N+ S   P   
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 423 GNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482
            N + L+                          D   N      P        E I    
Sbjct: 533 LNSSTLKG------------------FGIRNQRDAQGNRTLREWP--------EGITLCP 566

Query: 483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNN 538
            L+ L +  N++   V  ++     + +LD+ DN    +   +             Y+  
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 539 SSL 541
             +
Sbjct: 624 QDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (317), Expect = 3e-30
 Identities = 38/314 (12%), Positives = 92/314 (29%), Gaps = 58/314 (18%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG----KIPQWLGNLTGLQHI 431
           +   V  L LE     G +P ++ +   L+ L L ++          P+ +      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 432 IMPKNHLEGPIPVEFCQLDWLQI--LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
              + H +        + D+  +    I+ +    S+     +            + +  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL--------KDTQIGQ 190

Query: 490 AHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISF 549
             NN+   V   +  L +L+   + ++          +     E      + D  ++   
Sbjct: 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-- 247

Query: 550 DFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI 609
                                           L  L+ +++     +  +P  +  L  +
Sbjct: 248 --------------------------------LKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 610 QILNLSHNNLT--------GTIPSTFSKLEAYRNLDLSYNKL-NGKIPRQLVELNAFVVF 660
           Q++N++ N               +     E  + + + YN L    +   L ++    + 
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 661 SFACNNLSGKIPEL 674
               N L GK+P  
Sbjct: 336 ECLYNQLEGKLPAF 349

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (482), Expect = 2e-50
 Identities = 89/617 (14%), Positives = 198/617 (32%), Gaps = 93/617 (15%)

Query: 78  RSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNS 137
            +++ + W   +          + + +   +    +  G       R+  L    L+G  
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGL---SLAGFG 334

Query: 138 FNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFP 197
               +  ++ +L+ ++ L    +    S  +   +     ++ + +++ I          
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSEERKHRIRMHYKKMFLD 393

Query: 198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHF 257
           + + L   D+    I  N     I  +S  SLK   + N               L+N   
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN---------------LTNRIT 438

Query: 258 RIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPI 317
            I  +   +   ++L+I +  N+    +              +  +           L  
Sbjct: 439 FISKA---IQRLTKLQIIYFANSPFTYDN--------IAVDWEDANSDYAKQYENEELSW 487

Query: 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF-N 376
            + K L  +++ N      +P  + D LP L   NI+ N    +     +    + +   
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 377 LTNVRWLLLEENHFVGEIPQS--LSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP 434
              ++   +  N+   E P S  L K   L  L   +N +   +    G    L  + + 
Sbjct: 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLD 603

Query: 435 KNHLEGPIPVEFCQ-LDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
            N +E  IP +FC   D ++ L  S N +   +P+ F+         +  +  +  ++N 
Sbjct: 604 YNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN------AKSVYVMGSVDFSYNK 655

Query: 494 LEGEVPVQLCGLNQLQL-----LDLSDNNLHGLIPPFFYN-TALHE---SYNNNSSLDKP 544
           +  E     C ++  +      + LS N +       F   + +     S N  +S+ + 
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE- 714

Query: 545 FEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI- 603
                              +   +               LL+ IDL  NKL   +     
Sbjct: 715 --------------NSLKPKDGNYKN-----------TYLLTTIDLRFNKLTS-LSDDFR 748

Query: 604 -GNLTRIQILNLSHNNLTGTIPSTFSKLEA------YRNLDLSYNKLNGKIPRQLVELNA 656
              L  +  +++S+N  + + P+                 D   N++  + P  +    +
Sbjct: 749 ATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 657 FVVFSFACNNLSGKIPE 673
            +      N++  K+ E
Sbjct: 808 LIQLQIGSNDIR-KVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (448), Expect = 4e-46
 Identities = 87/583 (14%), Positives = 171/583 (29%), Gaps = 103/583 (17%)

Query: 97  QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLK 156
           ++  LSL+     G V         + +L  LK+     +S   S         +    +
Sbjct: 324 RVTGLSLAGFGAKGRV------PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 157 LSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT 216
              +R+         D    L + D+ ++ I+           K    + +    I   T
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN---PEMKPIKKDSRISLKDTQIGNLT 434

Query: 217 NFLQIIGES---MPSLKHLSLSN--FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR 271
           N +  I ++   +  L+ +  +N  F+  N +             +          N   
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKD 492

Query: 272 LKIFHAYNNEIHAEITES-HSLTAPTFQLKSLSLSS-------GYGDGPFRLP--IHSHK 321
           L     YN     ++ +  + L     +L+SL+++               RL     +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLP----ELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 322 SLRLLDVSNNNFQGCIPVEIG-DILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
            +++  +  NN +   P       +  L   +   N +      +F             +
Sbjct: 549 KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFG--------TNVKL 597

Query: 381 RWLLLEENHFVGEIPQSLSKCF-LLKGLYLNNNNLSGKIPQW--LGNLTGLQHIIMPKNH 437
             L L+ N    EIP+        ++GL  ++N L   IP      ++  +  +    N 
Sbjct: 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 438 LEGPIPVEFCQLDW-----LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN 492
           +        C +D         + +S N I       F           S +S +IL++N
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--------ATGSPISTIILSNN 707

Query: 493 NLE-------GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-----TALHESYNNNSS 540
            +                    L  +DL  N L  L   F        + +  SYN  SS
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP 600
                                  +    +        Q +   +    D   N+++   P
Sbjct: 768 FPT--------------------QPLNSS--------QLKAFGIRHQRDAEGNRILRQWP 799

Query: 601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
             I     +  L +  N++         +L     LD++ N  
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  160 bits (405), Expect = 9e-41
 Identities = 63/505 (12%), Positives = 147/505 (29%), Gaps = 53/505 (10%)

Query: 63  NNTTGRVIQLYLSNTRSME----LEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGAS 118
           +       +++L   + +     L++         P ++   +SL    I          
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 119 SREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLE 178
           S+ + RL  L++   + +       +              Y +   + +   + +  +L 
Sbjct: 441 SKAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLT 494

Query: 179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS 238
            +++         +P        L+ L+++        N      +       L+    +
Sbjct: 495 DVELYNCPNMT-QLPDFLYDLPELQSLNIAC-------NRGISAAQLKADWTRLADDEDT 546

Query: 239 PSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298
                  + Q+ ++  N+     +   L    +L +    +N++   +    +      +
Sbjct: 547 GPK----I-QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV----K 596

Query: 299 LKSLSLS----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI-LPSLSCFNI 353
           L  L L         +            +  L  S+N  +  IP       +  +   + 
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFT----DQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S N +     +         ++   N   + L  N       +  +    +  + L+NN 
Sbjct: 652 SYNKIGSEGRNISCS---MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 414 LS-------GKIPQWLGNLTGLQHIIMPKNHLEG-PIPVEFCQLDWLQILDISDNNISGS 465
           ++               N   L  I +  N L           L +L  +D+S N  S S
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-S 767

Query: 466 LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF 525
            P+     S  Q+             N +  + P  +     L  L +  N++  +    
Sbjct: 768 FPTQPLNSS--QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 526 FYN-TALHESYNNNSSLDKPFEISF 549
                 L  + N N S+D      +
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPY 850

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (398), Expect = 7e-40
 Identities = 62/466 (13%), Positives = 126/466 (27%), Gaps = 83/466 (17%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSR-------------EVTRLNNLKMFDLSGNSF 138
                +L+ +  + +                             + L +L   +L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 139 NNSILSSLTRLSSVRSLKLSYNRLEGSIDV--------KEFDSFNNLEVLDMKRNEIDNL 190
              +   L  L  ++SL ++ NR   +  +         + D+   +++  M  N ++  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVL 250
                      L  LD  +       N ++ + E+  +   L                 L
Sbjct: 564 PASASLQKMVKLGLLDCVH-------NKVRHL-EAFGTNVKL---------------TDL 600

Query: 251 WLSNNHFR-IPISPDPLFNH-SRLKIFHAYNNEIHA--EITESHSLTAPTFQLKSLSLS- 305
            L  N    IP           +++     +N++     I  + S+      + S+  S 
Sbjct: 601 KLDYNQIEEIPED---FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY----VMGSVDFSY 653

Query: 306 ----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
               S   +    +  +   +   + +S N  Q             +S   +S N +  S
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT-GSPISTIILSNNLM-TS 711

Query: 362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL--LKGLYLNNNNLSGKIP 419
           IP +          N   +  + L  N     +        L  L  + ++ N  S   P
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP 769

Query: 420 QWLGNLTGLQHI------IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
               N + L+            N +    P        L  L I  N+I   +       
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--- 825

Query: 474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
                     L  L +A N         +C   +  +  L  +   
Sbjct: 826 -------TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  156 bits (396), Expect = 1e-39
 Identities = 74/568 (13%), Positives = 147/568 (25%), Gaps = 146/568 (25%)

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
           F+   + + +     L     V  L L+    +G +          L+VL    +     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSE--- 359

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVL 250
                       E L    +    +   +      +   + L+LS+    +      ++ 
Sbjct: 360 ---TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPEM- 414

Query: 251 WLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGD 310
                    PI  D   +    +I +  N                  ++  +S +     
Sbjct: 415 --------KPIKKDSRISLKDTQIGNLTN------------------RITFISKA----- 443

Query: 311 GPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHM 370
                 I     L+++  +N+ F                  N        +   S+    
Sbjct: 444 ------IQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEELSWS--- 488

Query: 371 FSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG---------KIPQW 421
                NL ++  + L     + ++P  L     L+ L +  N             ++   
Sbjct: 489 -----NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 422 LGNLTGLQHIIMPKNHLEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480
                 +Q   M  N+LE  P      ++  L +LD   N +            +E    
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR----------HLEAFGT 593

Query: 481 LSGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS 539
              L+ L L +N +E E+P   C   +Q++ L  S N L   IP                
Sbjct: 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPN--------------- 636

Query: 540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI 599
                    F+ ++                            + ++  +D S NK+    
Sbjct: 637 --------IFNAKS----------------------------VYVMGSVDFSYNKIGSEG 660

Query: 600 P-----PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL-------NGKI 647
                            + LS+N +       F+       + LS N +           
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 648 PRQLVELNAFVVFSFACNNLSGKIPELT 675
                            N L+    +  
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (368), Expect = 4e-36
 Identities = 54/382 (14%), Positives = 117/382 (30%), Gaps = 39/382 (10%)

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
           + ++  +  L ++    +G +P  IG  L  L   +   ++   S     +  +      
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436
               R + +       +  Q L+   LL+     N  +         +L   Q I    N
Sbjct: 378 ERKHR-IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTN 435

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI-----------EQINGLSGLS 485
            +   I     +L  LQI+  +++  +    +     +               + L  L+
Sbjct: 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 486 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPF 545
            + L +     ++P  L  L +LQ L+++ N            T L +  +    +    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI---- 550

Query: 546 EISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN 605
              F       +    S  + +              +  L  +D   NK+        G 
Sbjct: 551 -QIFYMGYNNLEEFPASASLQK--------------MVKLGLLDCVHNKV--RHLEAFGT 593

Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR--QLVELNAFVVFSFA 663
             ++  L L +N +        +  +    L  S+NKL   IP       +       F+
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFS 652

Query: 664 CNNLSGKIPELTAQFATFNESS 685
            N +  +   ++     +   +
Sbjct: 653 YNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 1e-23
 Identities = 53/414 (12%), Positives = 117/414 (28%), Gaps = 63/414 (15%)

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN-NFQGC 336
           Y +   A    +  L A T+Q+ + +  S  G     L   S +      + N       
Sbjct: 197 YMDIGVATCDSAVWLPAGTYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDAN 256

Query: 337 IPVEIGDILPSLS---CFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEE-NHFVG 392
           +P+++ +    +           ALDG     +     +   +  N  W   +E + +  
Sbjct: 257 VPIQLKETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN--WNFNKELDMWGD 313

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           +    L     + GL L      G++P  +G LT L+ +    +       +   +    
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
            + +   + I       F L   +++N    L   I  +  ++         L   Q+ +
Sbjct: 374 DMSEERKHRIRMHYKKMF-LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 513 LSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568
           L+ N +   I            ++ + +  +  +                          
Sbjct: 433 LT-NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA------------------------ 466

Query: 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS 628
                               +    K   +      NL  +  + L +      +P    
Sbjct: 467 --------------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 629 KLEAYRNLDLSYNKLNG---------KIPRQLVELNAFVVFSFACNNLSGKIPE 673
            L   ++L+++ N+            ++           +F    NNL    P 
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (470), Expect = 6e-50
 Identities = 108/591 (18%), Positives = 197/591 (33%), Gaps = 83/591 (14%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
            N+ +  + S N       ++ +RL ++  L L+  ++   I    F S + L+ L +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES----MPSLKHLSLSN---- 236
           N +  +         K+L+HL             +  I         +L+ L L +    
Sbjct: 91  NPLIFMA-ETALSGPKALKHLFFIQ-------TGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 237 --FSPSNDSWTLNQVLWLSNNHFRIPISPDPL--FNHSRLKIFHAYNNEIHAEITESHSL 292
               P        +VL   NN     +S + +     +     +   N+I     E  + 
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI--AGIEPGAF 199

Query: 293 TAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEI-GDILPSLSCF 351
            +  FQ  +   +         L   + +SL L    + + +   P    G    S+   
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 352 NISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNN 411
           N+  +       ++F           + ++ L L   H   E+P  L     LK L L+ 
Sbjct: 260 NLQKHYFFNISSNTFH--------CFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSA 310

Query: 412 NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCF 470
           N           N   L H+ +  N     +       L+ L+ LD+S ++I  S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD---- 366

Query: 471 HLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-- 528
                 Q+  LS L  L L++N              QL+LLDL+   L        +   
Sbjct: 367 --CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 529 ---TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL 585
                L+ S++                         S ++F+                 L
Sbjct: 425 HLLKVLNLSHSLLDIS--------------------SEQLFDGLPA-------------L 451

Query: 586 SGIDLSCNKL---IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642
             ++L  N            +  L R++IL LS  +L+      F+ L+   ++DLS+N+
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
           L       L  L    + + A N++S  +P L    +     + + NP  C
Sbjct: 512 LTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (464), Expect = 3e-49
 Identities = 106/595 (17%), Positives = 199/595 (33%), Gaps = 92/595 (15%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
           L  S      L    +    F+    L  L L+   I   +  +   S      + L   
Sbjct: 38  LEFSFNV---LPT--IQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQS-----QHRLDTL 86

Query: 132 DLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV 191
            L+ N       ++L+   +++ L      +  SID     +   LE L +  N I ++ 
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 192 VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHL----------SLSNFSPSN 241
           +P+     + L+ LD        N     +  E M SL+             ++   P  
Sbjct: 146 LPK-GFPTEKLKVLDFQ------NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 242 DSWTLNQVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTAPTFQLK 300
               + Q L        + I      +    L +    + +   +I+ +         ++
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVE 257

Query: 301 SLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG 360
           S++L   Y         H    L+ LD++  +    +P  +   L +L    +S N  + 
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVG-LSTLKKLVLSANKFEN 315

Query: 361 SIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI-PQSLSKCFLLKGLYLNNNNL--SGK 417
               S          N  ++  L ++ N    E+    L     L+ L L+++++  S  
Sbjct: 316 LCQISAS--------NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 418 IPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQ 477
               L NL+ LQ + +  N         F +   L++LD++   +               
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP------- 420

Query: 478 INGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI---PPFFYN-TALHE 533
              L  L  L L+H+ L+        GL  LQ L+L  N+                 L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 534 ---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDL 590
              S+ + SS+D+       F + +                             ++ +DL
Sbjct: 481 LVLSFCDLSSIDQHA-----FTSLKM----------------------------MNHVDL 507

Query: 591 SCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG 645
           S N+L       + +L  I  LNL+ N+++  +PS    L   R ++L  N L+ 
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 3e-34
 Identities = 60/352 (17%), Positives = 106/352 (30%), Gaps = 25/352 (7%)

Query: 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL 383
           +  +  N      IP   G +  S  C   S N L     ++F          L N+ +L
Sbjct: 15  KTYNCENLGLNE-IP---GTLPNSTECLEFSFNVLPTIQNTTFS--------RLINLTFL 62

Query: 384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP 443
            L           +      L  L L  N L       L     L+H+   +  +     
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 444 VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503
           +       L+ L +  N+IS                    L  L   +N +       + 
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKG--------FPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 504 GLNQLQL--LDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK 561
            L Q     L+L+ N++ G+ P  F +          +             +T + +   
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQSLWLG 233

Query: 562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG 621
           + E  +    S A       +S+ S I+L  +             + +Q L+L+  +L+ 
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVES-INLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 622 TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673
            +PS    L   + L LS NK             +    S   N    ++  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (345), Expect = 8e-34
 Identities = 92/531 (17%), Positives = 155/531 (29%), Gaps = 137/531 (25%)

Query: 129 KMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEID 188
           K ++      N  I  +L   +S   L+ S+N L  +I    F    NL  LD+ R +I 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 189 NLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQ 248
            +     F     L+ L ++          + +   ++   K L               +
Sbjct: 71  WIH-EDTFQSQHRLDTLVLT------ANPLIFMAETALSGPKAL---------------K 108

Query: 249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGY 308
            L+         I   PL N   L+  +  +N I        S+  P             
Sbjct: 109 HLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS-------SIKLPKGF---------- 150

Query: 309 GDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSC--FNISMNALDGSIPSSF 366
                       + L++LD  NN     +  E    L   +    N++ N +   I    
Sbjct: 151 ----------PTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI-AGIEPGA 198

Query: 367 EGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL--LKGLYLNNNNLSGKIPQWLGN 424
                   F+    + L       +  I + L    +  L      + +     P     
Sbjct: 199 --------FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484
           L  +                       ++ +++  +       + FH          SGL
Sbjct: 251 LCEMS----------------------VESINLQKHYFFNISSNTFH--------CFSGL 280

Query: 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSS 540
             L L   +L  E+P  L GL+ L+ L LS N    L      N    T L    N    
Sbjct: 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL--IGH 598
                  +    N                            L  L  +DLS + +     
Sbjct: 340 ----ELGTGCLEN----------------------------LENLRELDLSHDDIETSDC 367

Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR 649
               + NL+ +Q LNLS+N         F +      LDL++ +L  K  +
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (316), Expect = 4e-30
 Identities = 53/349 (15%), Positives = 105/349 (30%), Gaps = 42/349 (12%)

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
            +P     S   L+ S N             L +L+  +++   +      +F+      
Sbjct: 26  EIPGTLPNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQ------ 78

Query: 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM 433
             +   +  L+L  N  +     +LS    LK L+     +S      L N   L+ + +
Sbjct: 79  --SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             NH+      +    + L++LD  +N I          L        + LS L L  N+
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-----QATNLS-LNLNGND 190

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE------SYNNNSSLDKPFEI 547
           +   +          Q L+        +I     N+ +           ++  +      
Sbjct: 191 IA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 548 SFDFRNTEK------KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
                + E            S   F                S L  +DL+    +  +P 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHC-------------FSGLQELDLTATH-LSELPS 295

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ 650
            +  L+ ++ L LS N        + S   +  +L +  N    ++   
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 8e-28
 Identities = 71/427 (16%), Positives = 143/427 (33%), Gaps = 62/427 (14%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L    T+++ +          +  Q L   +    +     E+   +  E     +++ 
Sbjct: 206 SLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDD----EDISPAVFEGLCEMSVES 258

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
            +L  + F N   ++    S ++ L L+   L   +        + L+ L +  N+ +NL
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENL 316

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN----FSPSNDSWTL 246
                  +F SL HL +                E++ +L+ L LS+     S   +    
Sbjct: 317 C-QISASNFPSLTHLSIKGNTK--RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 247 N----QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL 302
           N    Q L LS N     +  +      +L++       +   + ++ S       LK L
Sbjct: 374 NLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLK--VKDAQSPFQNLHLLKVL 430

Query: 303 SLS----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI--LPSLSCFNISMN 356
           +LS        +  F        +L+ L++  N+F      +   +  L  L    +S  
Sbjct: 431 NLSHSLLDISSEQLF----DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG 416
            L      +F         +L  +  + L  N       ++LS    +  L L +N++S 
Sbjct: 487 DLSSIDQHAFT--------SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISI 537

Query: 417 KIPQWLGNLTGLQHIIMPKNHLE--------------------GPIPVEFCQLDWLQILD 456
            +P  L  L+  + I + +N L+                                L+ + 
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVR 597

Query: 457 ISDNNIS 463
           +SD  +S
Sbjct: 598 LSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 6e-12
 Identities = 23/222 (10%), Positives = 49/222 (22%), Gaps = 64/222 (28%)

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
           +  +  +  ++  +P              +    L  + N L          L  L  LD
Sbjct: 15  KTYNCENLGLN-EIPG----------TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 513 LSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKS 572
           L+   ++ +    F +                                            
Sbjct: 64  LTRCQIYWIHEDTFQS-------------------------------------------- 79

Query: 573 NAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEA 632
                       L  + L+ N LI      +     ++ L      ++          + 
Sbjct: 80  ---------QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 633 YRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPEL 674
             +L L  N ++     +        V  F  N +     E 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (442), Expect = 3e-46
 Identities = 97/586 (16%), Positives = 168/586 (28%), Gaps = 76/586 (12%)

Query: 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
           ++ K  DLS N        S +  S ++ L LS   +E +I+ K +   ++L  L +  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 186 EIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWT 245
            I +   P  F    SLE+L          T    +    +  L  L             
Sbjct: 91  PIQSF-SPGSFSGLTSLENLVAV------ETKLASLESFPIGQLITL------------- 130

Query: 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES-HSLTAPTFQLKSLSL 304
             + L +++N       P    N + L       N I          L        SL +
Sbjct: 131 --KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 305 S----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDG 360
           S        D  F+        L  L +  N     I       L  L    + +     
Sbjct: 189 SLNPIDFIQDQAFQGI-----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 361 SIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ 420
                       +      +    L   +   +          +  + L   ++      
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED- 302

Query: 421 WLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480
            +      Q + + +  L+         L +L+ L ++ N  S S               
Sbjct: 303 -VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKV----------A 348

Query: 481 LSGLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SY 535
           L  LS+L L+ N L   G       G N L+ LDLS N    +   F     L      +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 536 NNNSSLDKPFEISF-------DFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGI 588
           +    + +             D   T              T       + G  L+ L+ +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTN-------------TKIDFDGIFLG--LTSLNTL 453

Query: 589 DLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI 647
            ++ N    +    +  N T +  L+LS   L       F  L   + L++S+N L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 648 PRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
                +L +      + N +      L     +    +   N   C
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 2e-45
 Identities = 109/595 (18%), Positives = 196/595 (32%), Gaps = 96/595 (16%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           L +Y F+ F +L+ L LS   I   +E++         L++L    L+GN   +    S 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIET-IEDKAWHG-----LHHLSNLILTGNPIQSFSPGSF 100

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
           + L+S+ +L     +L  S++         L+ L++  N I +  +P  F +  +L H+D
Sbjct: 101 SGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 207 MSYAHI-ALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIP 260
           +SY +I  +  N LQ + E+      L +S                   L L  N     
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 261 ISPDPLFNHSRLKIFHAYNNEIH-----AEITESHSLTAPTFQLKSLSLSSGYGDGPFRL 315
           I    L N + L +      E            S         +    L+         +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
             H   ++  + ++  + +    +E           +I    L    P+           
Sbjct: 280 KFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLK-QFPT----------L 325

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ--WLGNLTGLQHIIM 433
           +L  ++ L L  N   G I         L  L L+ N LS              L+H+ +
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             N     +   F  L+ LQ LD   + +         +        L  L +L +++ N
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKR-------VTEFSAFLSLEKLLYLDISYTN 435

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553
            + +      GL  L  L ++ N+                 + N ++L            
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS--------NVFANTTNL------------ 475

Query: 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN 613
                                       L      DLS  +L          L R+Q+LN
Sbjct: 476 --------------------------TFL------DLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
           +SHNNL     S +++L +   LD S+N++            +   F+   N+++
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (387), Expect = 4e-39
 Identities = 83/482 (17%), Positives = 155/482 (32%), Gaps = 55/482 (11%)

Query: 85  WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSIL- 143
              +   F+    LE+L      +A         S  + +L  LK  +++ N  ++  L 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASL------ESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 144 SSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNL----EVLDMKRNEIDNLVVPQGFPHF 199
           +  + L+++  + LSYN ++ +I V +             LDM  N ID +         
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFI--QDQAFQG 203

Query: 200 KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN----------QV 249
             L  L +     + N     +   +   +  L L  F    +                +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 250 LWLSNNHFRI-PISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGY 308
                 +              + +             I     +    F+ +SLS+    
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV----SIKYLEDV-PKHFKWQSLSIIRCQ 318

Query: 309 GDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG 368
                  P      L+ L ++ N             LPSLS  ++S NAL  S   S+  
Sbjct: 319 LKQ---FPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSY-- 370

Query: 369 HMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW-LGNLTG 427
                +    ++R L L  N  +  +  +      L+ L   ++ L          +L  
Sbjct: 371 ----SDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
           L ++ +   + +      F  L  L  L ++ N+   +  S             + L+ L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------FANTTNLTFL 478

Query: 488 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDK 543
            L+   LE         L++LQLL++S NNL  L    +      + L  S+N   +   
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 544 PF 545
             
Sbjct: 539 IL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  150 bits (382), Expect = 2e-38
 Identities = 84/476 (17%), Positives = 144/476 (30%), Gaps = 58/476 (12%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L    T+   LE      +       L+ L+++ N I  C      S+     L NL  
Sbjct: 108 NLVAVETKLASLES-----FPIGQLITLKKLNVAHNFIHSCKLPAYFSN-----LTNLVH 157

Query: 131 FDLSGNSFNNSILSSLTRLSSVR----SLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
            DLS N      ++ L  L        SL +S N ++  I  + F     L  L ++ N 
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNF 215

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS-NDSWT 245
             + ++     +   L    +         N        M  L  +++  F  +  + ++
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 246 LN----------QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAP 295
            +            + L+    +     + +  H + +       ++    T        
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 296 TFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIP-VEIGDILPSLSCFNIS 354
              LKSL+L+   G   F     +  SL  LD+S N                SL   ++S
Sbjct: 329 --FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 355 MNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS-LSKCFLLKGLYLNNNN 413
            N     + ++F          L  ++ L  + +        S       L  L ++  N
Sbjct: 385 FNGA-IIMSANFM--------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHL 472
                      LT L  + M  N  +       F     L  LD+S   +       F  
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD- 494

Query: 473 LSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528
                   L  L  L ++HNNL          L  L  LD S N +        + 
Sbjct: 495 -------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (308), Expect = 4e-29
 Identities = 59/337 (17%), Positives = 108/337 (32%), Gaps = 30/337 (8%)

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
               +      +P    DI  S    ++S N L      SF         N + ++WL L
Sbjct: 16  YQCMDQKLSK-VP---DDIPSSTKNIDLSFNPLKILKSYSFS--------NFSELQWLDL 63

Query: 386 EENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE 445
                     ++      L  L L  N +    P     LT L++++  +  L       
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 446 FCQLDWLQILDISDNNISG-SLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG 504
             QL  L+ L+++ N I    LP+ F        + L+ L H+ L++N ++      L  
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYF--------SNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 505 LNQLQL----LDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKK 557
           L +       LD+S N +  +    F    LHE     N NSS      +         +
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 558 VEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN 617
           +     +             +G     +    L+              L  +  ++L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 618 NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654
           ++         K   +++L +   +L       L  L
Sbjct: 296 SIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (273), Expect = 7e-25
 Identities = 50/392 (12%), Positives = 107/392 (27%), Gaps = 77/392 (19%)

Query: 63  NNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREV 122
            +    +  + +   R     ++  +   F     + ++SL+  +I            +V
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--------KYLEDV 303

Query: 123 TRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDM 182
            +    +   +            L  L   +SL L+ N+   S       +  +L  LD+
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGSISFK---KVALPSLSYLDL 357

Query: 183 KRNEIDNLVV-PQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSN 241
            RN +              SL HLD+S+       N   I+  +   L+ L         
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSF-------NGAIIMSANFMGLEEL--------- 401

Query: 242 DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS 301
                 Q L   ++  +         +  +L                        F    
Sbjct: 402 ------QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------KIDFDGIFL--- 445

Query: 302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
                               SL  L ++ N+F+      +     +L+  ++S   L+  
Sbjct: 446 -----------------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW 421
               F+         L  ++ L +  N+ +       ++ + L  L  + N +       
Sbjct: 489 SWGVFD--------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQ 453
                 L    +  N +        C+     
Sbjct: 541 QHFPKSLAFFNLTNNSVA-----CICEHQKFL 567

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 582 LSLLSGIDLSC-NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
           + ++  I   C ++ +  +P  I   +  + ++LS N L      +FS     + LDLS 
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65

Query: 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPEL 674
            ++     +    L+         N +    P  
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (417), Expect = 3e-42
 Identities = 122/678 (17%), Positives = 216/678 (31%), Gaps = 96/678 (14%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
           LN  +   LS N       SS   L  ++ L+L       +ID + F +  NL +LD+  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSY---AHIALNTNFLQIIGESMPSLKHLSLSN----- 236
           ++I  L  P  F     L  L + +   +   L   + +    ++ +L  L LS      
Sbjct: 83  SKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR----NLKALTRLDLSKNQIRS 137

Query: 237 --FSPSNDSWTLNQVLWLSNNHFRIPISPDPL--FNHSRLKIFHAYNNEIHAEITESHSL 292
               PS       + +  S+N   + +    L       L  F    N +++ ++     
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 293 TAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFN 352
               F+   L +          L +  +     +  + +N           +   +    
Sbjct: 197 CMNPFRNMVLEI----------LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN 412
              + +     ++F G         ++VR L L          +       LK L L  N
Sbjct: 247 FGFHNIKDPDQNTFAG------LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 413 NLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL 472
            ++    +    L  LQ + +  N L       F  L  +  +D+  N+I+      F  
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK- 359

Query: 473 LSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALH 532
                   L  L  L L  N L       +  +  +  + LS N L  L         +H
Sbjct: 360 -------FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 533 ESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSC 592
            S N   +LD    + F  R    ++   +   F   +     +        L  + L  
Sbjct: 408 LSENRLENLD---ILYFLLRVPHLQILILNQNRFSSCSGDQTPS----ENPSLEQLFLGE 460

Query: 593 NKLIGHIPPPI-----GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL---- 643
           N L       +       L+ +Q+L L+HN L    P  FS L A R L L+ N+L    
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 644 NGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP----- 698
           +  +P  L  L+       + N L    P+    F + +      N F+C   L      
Sbjct: 521 HNDLPANLEILD------ISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINW 571

Query: 699 ---------------ICRSPATMPEAS----TNNEGDDNLIDTGNFFITFTISYIILIFG 739
                           C  P +    S    +    D+  +     F  F +  + L   
Sbjct: 572 LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLF 631

Query: 740 IIIVLYVNPYWRRRWFYL 757
           ++ +L V  +    +   
Sbjct: 632 LMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 3e-18
 Identities = 57/312 (18%), Positives = 102/312 (32%), Gaps = 25/312 (8%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKI-PQWLGNLTGLQHIIMP 434
            L     LLL  N+       S      L+ L L +      I  +   NL  L+ + + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 435 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
            + +    P  F  L  L  L +    +S +      +L       L  L+ L L+ N +
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDA------VLKDGYFRNLKALTRLDLSKNQI 135

Query: 495 EG-EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN------TALHESYNNNSSLDKP--F 545
               +      LN L+ +D S N +  +             +    + N+  S       
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 546 EISFDFRNTEKKVEKKSHEIFEFTTKSNAYT-------YQGRVLSLLSGIDLSCNKLIGH 598
           +    FRN   ++   S   +      N          +   +   + G     + +   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 599 IPPPIGNLTR--IQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNA 656
                  L R  ++ L+LSH  +       F  L+  + L+L+YNK+N         L+ 
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 657 FVVFSFACNNLS 668
             V + + N L 
Sbjct: 316 LQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 4e-13
 Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 66/267 (24%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
            +    NL+ ++PQ    L   + +++  N++       F  L+ LQ+L++       ++
Sbjct: 9   AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFF 526
                    E    L  L  L L  + +    P    GL  L  L L    L   +    
Sbjct: 65  DK-------EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 527 YNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS 586
           Y                       FRN                            L  L+
Sbjct: 118 Y-----------------------FRN----------------------------LKALT 126

Query: 587 GIDLSCNKLIG-HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEA--YRNLDLSYNKL 643
            +DLS N++   ++ P  G L  ++ ++ S N +          L+        L+ N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 644 NGKIPRQLVE-LNAFVVFSFACNNLSG 669
             ++     + +N F        ++SG
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSG 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (376), Expect = 6e-38
 Identities = 110/579 (18%), Positives = 199/579 (34%), Gaps = 111/579 (19%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           L +Y F  F +L+ L LS   I   +E+    S     L++L    L+GN   +  L + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQS-----LSHLSTLILTGNPIQSLALGAF 96

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
           + LSS++ L      L  S++         L+ L++  N I +  +P+ F +  +LEHLD
Sbjct: 97  SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 207 MSYAHIALNTNFLQ-IIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDP 265
           +S        N +Q I    +  L  + L N S           L LS N   +      
Sbjct: 156 LSS-------NKIQSIYCTDLRVLHQMPLLNLS-----------LDLSLN--PMNFIQPG 195

Query: 266 LFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLR 324
            F   RL      NN     + ++        ++  L L     +G   +    + + L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 325 LLDVSNNNFQG--CIPVEIGDI---LPSLSCFNISMNALDGSIPSSFEGHMFS------- 372
            L +             +I D+   L ++S F++    ++     S+             
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 373 ----KNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS--GKIPQWLGNLT 426
                   L +++ L    N        S      L+ L L+ N LS  G   Q     T
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSH 486
            L+++ +  N +   +   F  L+ L+ LD   +N+                  L  L +
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-------FLSLRNLIY 425

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFE 546
           L ++H +          GL+ L++L ++ N+      P                      
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---------------------- 463

Query: 547 ISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GN 605
                            +IF                  L+ +DLS  + +  + P    +
Sbjct: 464 -----------------DIFTELRN-------------LTFLDLSQCQ-LEQLSPTAFNS 492

Query: 606 LTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
           L+ +Q+LN++ N L       F +L + + + L  N  +
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (357), Expect = 2e-35
 Identities = 101/560 (18%), Positives = 180/560 (32%), Gaps = 123/560 (21%)

Query: 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
            + K  DLS N   +    S      ++ L LS   ++ +I+   + S ++L  L +  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 186 EIDNLVVPQGFPHFKSLEHLDMSYAHIA-----------------LNTNFLQIIGE---- 224
            I +L     F    SL+ L     ++A                 +  N +Q        
Sbjct: 87  PIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 225 -SMPSLKHLSLSN----------FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLK 273
            ++ +L+HL LS+              +    LN  L LS N   +       F   RL 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGAFKEIRLH 203

Query: 274 IFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLLDVSNNN 332
                NN     + ++        ++  L L     +G   +    + + L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 333 FQG--CIPVEIGDI---LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEE 387
                    +I D+   L ++S F++    ++  +        FS NF   ++  +  + 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD------FSYNFGWQHLELVNCKF 316

Query: 388 NHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVE 445
             F     +SL +      L   +N           +L  L+ + + +N L   G     
Sbjct: 317 GQFPTLKLKSLKR------LTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 446 FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG-EVPVQLCG 504
                 L+ LD+S N +  ++ S F         GL  L HL   H+NL+          
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFL--------GLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE 564
           L  L  LD+S  +        F                                      
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNG------------------------------------ 443

Query: 565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTI 623
                            LS L  + ++ N    +  P I   L  +  L+LS   L    
Sbjct: 444 -----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 624 PSTFSKLEAYRNLDLSYNKL 643
           P+ F+ L + + L+++ N+L
Sbjct: 487 PTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 2e-31
 Identities = 93/456 (20%), Positives = 153/456 (33%), Gaps = 37/456 (8%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
           L    T    LE      +     + L+ L+++ N I              + L NL+  
Sbjct: 105 LVAVETNLASLEN-----FPIGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHL 154

Query: 132 DLSGN---SFNNSILSSLTRLS-SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEI 187
           DLS N   S   + L  L ++     SL LS N +   I    F     L  L ++ N  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNFD 212

Query: 188 DNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN 247
              V+         LE   +         N  +    ++  L +L++  F  +   + L+
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL-SLSS 306
            ++ L N    +           R+K F       H E+        PT +LKSL  L+ 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGC-IPVEIGDILPSLSCFNISMNALDGSIPSS 365
               G          SL  LD+S N         +      SL   ++S N +  ++ S+
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS-LSKCFLLKGLYLNNNNLSGKIPQWLGN 424
           F          L  +  L  + ++       S       L  L +++ +           
Sbjct: 392 F--------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 425 LTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
           L+ L+ + M  N  +     + F +L  L  LD+S   +    P+ F        N LS 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--------NSLSS 495

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
           L  L +A N L+         L  LQ + L  N   
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 3e-22
 Identities = 69/382 (18%), Positives = 126/382 (32%), Gaps = 56/382 (14%)

Query: 97  QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN----SFNNSILSSLTRLSSV 152
           +L  L+L  N  +  V            ++ L + +         F+ S L  L  L+ +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-I 259

Query: 153 RSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHI 212
              +L+Y        +  F+   N+    +    I+ +   + F +    +HL++     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLEL----- 311

Query: 213 ALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN----QVLWLSNNHFR-IPISPDPLF 267
            +N  F Q     + SLK L+ ++    N    ++    + L LS N            F
Sbjct: 312 -VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 268 NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLD 327
             + LK      N +                    ++SS              + L  LD
Sbjct: 371 GTTSLKYLDLSFNGVI-------------------TMSSN---------FLGLEQLEHLD 402

Query: 328 VSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEE 387
             ++N +      +   L +L   +IS      +    F G        L+++  L +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAG 454

Query: 388 NHFVGEIPQ-SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEF 446
           N F         ++   L  L L+   L    P    +L+ LQ + M  N L+      F
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 447 CQLDWLQILDISDNNISGSLPS 468
            +L  LQ + +  N    S P 
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.2 bits (224), Expect = 7e-19
 Identities = 56/323 (17%), Positives = 103/323 (31%), Gaps = 26/323 (8%)

Query: 343 DILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF 402
           ++  S    ++S N L      SF         +   ++ L L           +     
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFF--------SFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
            L  L L  N +          L+ LQ ++  + +L          L  L+ L+++ N I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 463 -SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL----LDLSDNN 517
            S  LP  F        + L+ L HL L+ N ++      L  L+Q+ L    LDLS N 
Sbjct: 137 QSFKLPEYF--------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 518 LHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
           ++ + P  F    LH+     N +S       I         ++            K + 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 575 YTYQGRVLSLLSGIDLSCNKLIG-HIPPPIGNLTRIQILNLSHNNLTGTIPSTF-SKLEA 632
              +G     +    L+        I      LT +   +L    +      ++    + 
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 633 YRNLDLSYNKLNGKIPRQLVELN 655
              ++  + +      + L  L 
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT 331

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 582 LSLLSGIDLSCNKLIGHIPPP-IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
              L  +DLS  + I  I      +L+ +  L L+ N +       FS L + + L    
Sbjct: 51  FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 641 NKLNGKIPRQLVELNAFVVFSFACNNLS 668
             L       +  L      + A N + 
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%)

Query: 589 DLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648
           DLS N L         +   +Q+L+LS   +       +  L     L L+ N +     
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 649 RQLVELNAFVVFSFACNNLS 668
                L++         NL+
Sbjct: 94  GAFSGLSSLQKLVAVETNLA 113

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 1e-33
 Identities = 86/460 (18%), Positives = 160/460 (34%), Gaps = 70/460 (15%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
             +     L   N+   V            L+ +           +  +  +  L+++  
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTD--------LDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           +  S N+L    D+    +   L  + M  N+I ++       +  +L  L +    I  
Sbjct: 73  INFSNNQLT---DITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITD 126

Query: 215 NTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
                    +++ +L  L LS+      S  +   +L Q L   N          PL N 
Sbjct: 127 IDPL-----KNLTNLNRLELSSNTISDISALSGLTSL-QQLSFGNQV----TDLKPLANL 176

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVS 329
           + L+     +N++ ++I+    LT     L+SL  ++         P+    +L  L ++
Sbjct: 177 TTLERLDISSNKV-SDISVLAKLT----NLESLIATNNQISDIT--PLGILTNLDELSLN 229

Query: 330 NNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENH 389
            N  +      +   L +L+  +++ N +    P S           LT +  L L  N 
Sbjct: 230 GNQLKD--IGTLAS-LTNLTDLDLANNQISNLAPLS----------GLTKLTELKLGANQ 276

Query: 390 FVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQL 449
                P  L+    L  L LN N L    P  + NL  L ++ +  N++    P     L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQ 509
             LQ L   +N +S           +  +  L+ ++ L   HN +    P  L  L ++ 
Sbjct: 331 TKLQRLFFYNNKVS----------DVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 510 LLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEIS 548
            L L+D         +  N +  +   N   +L  P  IS
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (307), Expect = 2e-29
 Identities = 107/568 (18%), Positives = 179/568 (31%), Gaps = 135/568 (23%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
           L       L   +  +    S T L  V +L+     ++    +   +  NNL  ++   
Sbjct: 23  LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSW 244
           N++ ++       +   L  + M+        N +  I   + +L +L            
Sbjct: 78  NQLTDI---TPLKNLTKLVDILMNN-------NQIADI-TPLANLTNL------------ 114

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
                L L NN        DPL N + L      +N I  +I+    LT     L+ LS 
Sbjct: 115 ---TGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTIS-DISALSGLT----SLQQLSF 163

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
            +   D     P+ +  +L  LD+S+N             +  L+               
Sbjct: 164 GNQVTDLK---PLANLTTLERLDISSNKVSD---------ISVLA--------------- 196

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
                       LTN+  L+   N      P  L     L  L LN N L       L +
Sbjct: 197 -----------KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LAS 241

Query: 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484
           LT L  + +  N +    P     L  L  L +  N IS          +I  + GL+ L
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS----------NISPLAGLTAL 289

Query: 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKP 544
           ++L L  N LE   P  +  L  L  L L  NN+   I P    T L   +  N+ +   
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVSDV 346

Query: 545 FEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG 604
             ++                                 L+ ++ +    N++      P+ 
Sbjct: 347 SSLAN--------------------------------LTNINWLSAGHNQISD--LTPLA 372

Query: 605 NLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI-PRQLVELNAFVVFSFA 663
           NLTRI  L L+    T    +  + +      +   N     I P  + +  ++      
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 664 CNNLSGKIPELTAQFATFNESSYKGNPF 691
            N  S    E++  F+           F
Sbjct: 430 WNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 5e-27
 Identities = 90/528 (17%), Positives = 162/528 (30%), Gaps = 104/528 (19%)

Query: 167 DVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA------------- 213
            +    +        + +  + + V          +  L      I              
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72

Query: 214 --LNTNFLQIIGE--SMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPD 264
              + N L  I    ++  L  + ++N      +P  +   L   L L NN        D
Sbjct: 73  INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNL-TGLTLFNNQIT---DID 128

Query: 265 PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLR 324
           PL N + L      +N I  +I+    LT     L+ LS  +   D     P+ +  +L 
Sbjct: 129 PLKNLTNLNRLELSSNTIS-DISALSGLT----SLQQLSFGNQVTDLK---PLANLTTLE 180

Query: 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384
            LD+S+N         +   L +L     + N +    P             LTN+  L 
Sbjct: 181 RLDISSNKVSD--ISVLAK-LTNLESLIATNNQISDITPLG----------ILTNLDELS 227

Query: 385 LEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPV 444
           L  N        +L+    L  L L NN +S   P  L  LT L  + +  N +    P 
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282

Query: 445 EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG 504
               L  L  L++++N +            I  I+ L  L++L L  NN+    P  +  
Sbjct: 283 -LAGLTALTNLELNENQLE----------DISPISNLKNLTYLTLYFNNISDISP--VSS 329

Query: 505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE 564
           L +LQ L   +N +   +      T ++     ++ +     ++                
Sbjct: 330 LTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLAN--------------- 373

Query: 565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP 624
                            L+ ++ + L+        P        I     +        P
Sbjct: 374 -----------------LTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAP 414

Query: 625 STFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672
           +T S   +Y   D+++N  +          +  V         SG + 
Sbjct: 415 ATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 58/361 (16%), Positives = 110/361 (30%), Gaps = 60/361 (16%)

Query: 92  FTPFQQLESLSLSANNIAG-------------CVENEGASSREVTRLNNLKMFDLSGNSF 138
                 L  L LS+N I+                 N+    + +  L  L+  D+S N  
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189

Query: 139 NNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPH 198
             S +S L +L+++ SL  + N++    D+       NL+ L +  N++ ++        
Sbjct: 190 --SDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDI---GTLAS 241

Query: 199 FKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLS 253
             +L  LD++   I+            +  L  L L        SP      L   L L+
Sbjct: 242 LTNLTDLDLANNQISNLAPL-----SGLTKLTELKLGANQISNISPLAGLTAL-TNLELN 295

Query: 254 NNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF 313
            N         P+ N   L     Y N I  +I+   SLT    +L+ L   +       
Sbjct: 296 ENQLE---DISPISNLKNLTYLTLYFNNIS-DISPVSSLT----KLQRLFFYNNKVSDV- 346

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
              + +  ++  L   +N      P+     L  ++   ++  A   +  +         
Sbjct: 347 -SSLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 374 NF--------------NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP 419
                           +  +     +  N       +          +       SG + 
Sbjct: 403 TVKNVTGALIAPATISDGGSYTEPDITWNL-PSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

Query: 420 Q 420
           Q
Sbjct: 462 Q 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 44/188 (23%)

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN--TALHESYNNNSSL 541
           L    +  +    ++      L +     L   N+   +     +  T L        S+
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
           D    + +                                L+ L+ I+ S N+L      
Sbjct: 62  D---GVEY--------------------------------LNNLTQINFSNNQLTD--IT 84

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
           P+ NLT++  + +++N +    P   + L     L L  N++    P  L  L       
Sbjct: 85  PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 662 FACNNLSG 669
            + N +S 
Sbjct: 141 LSSNTISD 148

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (341), Expect = 2e-33
 Identities = 85/542 (15%), Positives = 173/542 (31%), Gaps = 78/542 (14%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
              +K  DLS N         L   ++++ L L  +R+  +I+   F S  +LE LD+  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES-----MPSLKHLSLSNFS- 238
           N + +L     F    SL++L++         N  Q +G +     + +L+ L + N   
Sbjct: 84  NHLSSL-SSSWFGPLSSLKYLNLMG-------NPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 239 ----PSNDSWTLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES--- 289
                  D   L     L +     R       L +   +     + +E    +      
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 290 -HSLTAPTFQLKSL-SLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI-LP 346
             S+     +  +L                    + R   +++ +F   + +    + L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG 406
            +   + ++N L    PS  +            +R L + + +   ++    S    +K 
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKN---HLEGPIPVEFCQLDWLQILDISDNNIS 463
           + + N+ +      +  +L  L+ + + +N                  LQ L +S N++ 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
            S+     +L       L  L+ L ++ N     +P       +++ L+LS   +  +  
Sbjct: 375 -SMQKTGEILL-----TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT 427

Query: 524 PFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL 582
                   L  S NN  S                                         L
Sbjct: 428 CIPQTLEVLDVSNNNLDSFSLF-------------------------------------L 450

Query: 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642
             L  + +S NKL     P       + ++ +S N L       F +L + + + L  N 
Sbjct: 451 PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 643 LN 644
            +
Sbjct: 509 WD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (298), Expect = 4e-28
 Identities = 83/466 (17%), Positives = 161/466 (34%), Gaps = 49/466 (10%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN-SILSS 145
           +    F     LE L LS N++         SS     L++LK  +L GN +    + S 
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL------SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
              L+++++L++        I   +F    +L  L++K   + N    Q     + + HL
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHL 177

Query: 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDP 265
            +  +        L+I  + + S+++L L + +         Q   L  +    P+    
Sbjct: 178 TLHLSES---AFLLEIFADILSSVRYLELRDTN-----LARFQFSPLPVDEVSSPMKKLA 229

Query: 266 LFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL-SLSSGYGDGPFRLPIHSHKSLR 324
                          ++   I E   +      L  L   +    D    L      ++R
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384
            L +            +  +L  +    +  + +                 +L ++ +L 
Sbjct: 290 RLHIPQFYLFY-DLSTVYSLLEKVKRITVENSKV-----FLVPCSFSQ---HLKSLEFLD 340

Query: 385 LEENHFVGEIPQS---LSKCFLLKGLYLNNNNLS--GKIPQWLGNLTGLQHIIMPKNHLE 439
           L EN  V E  ++         L+ L L+ N+L    K  + L  L  L  + + +N   
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499
            P+P      + ++ L++S   I   + +C              L  L +++NNL+    
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKTC----------IPQTLEVLDVSNNNLD-SFS 447

Query: 500 VQLCGLNQLQLLDLSDNNLHGLIPPFFYN--TALHESYNNNSSLDK 543
           +    L +LQ L +S N L  L     +     +  S N   S+  
Sbjct: 448 L---FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (297), Expect = 6e-28
 Identities = 69/443 (15%), Positives = 153/443 (34%), Gaps = 41/443 (9%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSIL-SS 145
           L++  F P   L+ L+L  N            +     L NL+   +      + I    
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
              L+S+  L++    L  +   +   S  ++  L +  +E    ++        S+ +L
Sbjct: 144 FAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYL 201

Query: 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDP 265
           ++   ++A        + E    +K L+      +++S+     L          +S   
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE----LSEVE 257

Query: 266 LFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRL 325
             + +   +     +E    ++E   +   T  ++ L +   Y            + ++ 
Sbjct: 258 FDDCTLNGLGDFNPSESDV-VSELGKVE--TVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
           + V N+     +P      L SL   ++S N +             +      +++ L+L
Sbjct: 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM-----VEEYLKNSACKGAWPSLQTLVL 368

Query: 386 EENHF--VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP 443
            +NH   + +  + L     L  L ++ N     +P        ++ + +    +     
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--- 424

Query: 444 VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503
           V+ C    L++LD+S+NN+  S               L  L  L ++ N L+  +P    
Sbjct: 425 VKTCIPQTLEVLDVSNNNLD-SFSL-----------FLPRLQELYISRNKLK-TLP-DAS 470

Query: 504 GLNQLQLLDLSDNNLHGLIPPFF 526
               L ++ +S N L  +    F
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIF 493

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 1e-27
 Identities = 96/549 (17%), Positives = 168/549 (30%), Gaps = 96/549 (17%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           +          L+ L L ++ I   +E +   S     L +L+  DLS N  ++   S  
Sbjct: 41  IGHGDLRACANLQVLILKSSRIN-TIEGDAFYS-----LGSLEHLDLSDNHLSSLSSSWF 94

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
             LSS++ L L  N  +       F +  NL+ L +   E  + +    F    SL  L+
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 207 MSYAHIALNTNFLQIIGE----SMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPIS 262
           +           L+        S+  + HL+L            ++  +L          
Sbjct: 155 IKA-------LSLRNYQSQSLKSIRDIHHLTLHL----------SESAFLLEIFA----- 192

Query: 263 PDPLFNHSRLKIFHAYNNEIHAEI----TESHSLTAPTFQLKSLSLSSGYGDGPFRLPIH 318
            D L +   L++                  S  +    F+   L+  S          I 
Sbjct: 193 -DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 319 SHKSLRLLDVSNNNFQGCIPVEIGDI--LPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
               +   D + N      P E   +  L  +    I    +           ++S    
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS---L 308

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW---LGNLTGLQHIIM 433
           L  V+ + +E +               L+ L L+ N +  +  +     G    LQ +++
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 434 PKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
            +NHL            L  L  LDIS N       SC              +  L L+ 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ---------WPEKMRFLNLSS 419

Query: 492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDF 551
             +     V+ C    L++LD+S+NNL            L+ S N   +L          
Sbjct: 420 TGIRV---VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-------- 468

Query: 552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQ 610
                                        +  +L  + +S N+ +  +P  I   LT +Q
Sbjct: 469 ---------------------------ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQ 500

Query: 611 ILNLSHNNL 619
            + L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 7e-26
 Identities = 88/535 (16%), Positives = 165/535 (30%), Gaps = 119/535 (22%)

Query: 132 DLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV 191
           D    SF  SI S L   ++++SL LS+N++   I   +  +  NL+VL +K + I+ + 
Sbjct: 11  DGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIE 66

Query: 192 VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSLKHLSLSNFSPSNDSWTLNQVL 250
               F    SLEHLD+S        N L  +  S    L  L               + L
Sbjct: 67  -GDAFYSLGSLEHLDLSD-------NHLSSLSSSWFGPLSSL---------------KYL 103

Query: 251 WLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYG 309
            L  N ++  +    LF + + L+     N E  +EI          F            
Sbjct: 104 NLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRI------DFA----------- 145

Query: 310 DGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGH 369
                       SL  L++   + +     +    +  +    + ++     +    +  
Sbjct: 146 ---------GLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADI- 194

Query: 370 MFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQ 429
                  L++VR+L L + +        L    +   +       S    +    L  L 
Sbjct: 195 -------LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 430 HIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
             I               +L  ++  D + N +    PS   ++S         +  L +
Sbjct: 248 RYI--------------LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 490 AHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPF 545
               L  ++      L +++ + + ++ +  +   F  +      L  S N         
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 546 EISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL--IGHIPPPI 603
                                                  L  + LS N L  +      +
Sbjct: 354 SACKGA------------------------------WPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 604 GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN---GKIPRQLVELN 655
             L  +  L++S N     +P +    E  R L+LS   +      IP+ L  L+
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 437

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 5e-18
 Identities = 58/417 (13%), Positives = 132/417 (31%), Gaps = 59/417 (14%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L + N  +       +    F     L  L + A ++          S+ +  + ++  
Sbjct: 127 TLRIGNVETFS----EIRRIDFAGLTSLNELEIKALSL------RNYQSQSLKSIRDIHH 176

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEG--SIDVKEFDSFNNLEVLDMKRNEID 188
             L  +     +      LSSVR L+L    L       +   +  + ++ L  + + + 
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 189 NL------VVPQGFPHFKSLEHLDMSYAHI-----ALNTNFLQIIGESMPSLKHLSLSNF 237
           +        + +       +E  D +   +     + +    ++      +++ L +  F
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 238 SPSND-----SWTLN-QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHS 291
               D     S     + + + N+   + +      +   L+      N +  E  ++ +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 292 LTAPTFQLKSLSLSS------GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDIL 345
                  L++L LS                   + K+L  LD+S N F   +P       
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEIL----LTLKNLTSLDISRNTFHP-MPDSC-QWP 409

Query: 346 PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLK 405
             +   N+S   +   + +               +  L +  N+        L +   L+
Sbjct: 410 EKMRFLNLSSTGIR-VVKTC----------IPQTLEVLDVSNNNL-DSFSLFLPR---LQ 454

Query: 406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
            LY++ N L   +P        L  + + +N L+      F +L  LQ + +  N  
Sbjct: 455 ELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 63/241 (26%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
           ++ LD+S N I+                  + L  LIL  + +          L  L+ L
Sbjct: 28  MKSLDLSFNKITYIGHGDLR--------ACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79

Query: 512 DLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK 571
           DLSDN+L  L   +F                                             
Sbjct: 80  DLSDNHLSSLSSSWFGP------------------------------------------- 96

Query: 572 SNAYTYQGRVLSLLSGIDLSCNKLIG-HIPPPIGNLTRIQILNLSHNNLTGTIP-STFSK 629
                     LS L  ++L  N      +     NLT +Q L + +      I    F+ 
Sbjct: 97  ----------LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 630 LEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGN 689
           L +   L++    L     + L  +      +   +  +  +       ++      +  
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 690 P 690
            
Sbjct: 207 N 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (302), Expect = 1e-29
 Identities = 74/436 (16%), Positives = 151/436 (34%), Gaps = 100/436 (22%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
             +L+     I     +          L       L   S  +  + +   L S+  L +
Sbjct: 2   AATLATLPAPINQIFPDAD--------LAEGIRAVLQKASVTD--VVTQEELESITKLVV 51

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
           +  ++     ++  +   NLE L++  N+I ++       +   L +L +         N
Sbjct: 52  AGEKVA---SIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGT-------N 98

Query: 218 FLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA 277
            +  I  ++ +L +L               + L+L+ ++        PL N +++   + 
Sbjct: 99  KITDI-SALQNLTNL---------------RELYLNEDNIS---DISPLANLTKMYSLNL 139

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCI 337
             N   ++++   ++T                             L  L V+ +  +   
Sbjct: 140 GANHNLSDLSPLSNMT----------------------------GLNYLTVTESKVKDVT 171

Query: 338 PVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS 397
           P+     L  L   +++ N ++   P +          +LT++ +     N      P  
Sbjct: 172 PIAN---LTDLYSLSLNYNQIEDISPLA----------SLTSLHYFTAYVNQITDITP-- 216

Query: 398 LSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI 457
           ++    L  L + NN ++   P  L NL+ L  + +  N +          L  L++L++
Sbjct: 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNV 272

Query: 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN 517
             N IS           I  +N LS L+ L L +N L  E    + GL  L  L LS N+
Sbjct: 273 GSNQIS----------DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 518 LHGLIPPFFYNTALHE 533
           +   I P    + +  
Sbjct: 323 ITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 2e-27
 Identities = 64/378 (16%), Positives = 136/378 (35%), Gaps = 61/378 (16%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
             +     L   ++   V            L ++    ++G    +  +  +  L+++  
Sbjct: 21  LAEGIRAVLQKASVTDVVT--------QEELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L L+ N++    D+    +   L  L +  N+I ++       +  +L  L ++  +I+ 
Sbjct: 71  LNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISD 124

Query: 215 NTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN-----QVLWLSNNHFRIPISPDPLFNH 269
            +        ++  +  L+L      +D   L+       L ++ +  +      P+ N 
Sbjct: 125 ISPL-----ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK---DVTPIANL 176

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRL----PIHSHKSLRL 325
           + L       N+I  +I+   SLT     L   +          ++    P+ +   L  
Sbjct: 177 TDLYSLSLNYNQIE-DISPLASLT----SLHYFTAYVN------QITDITPVANMTRLNS 225

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
           L + NN      P+     L  L+   I  N +  S  ++ +        +LT ++ L +
Sbjct: 226 LKIGNNKITDLSPLAN---LSQLTWLEIGTNQI--SDINAVK--------DLTKLKMLNV 272

Query: 386 EENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE 445
             N         L+    L  L+LNNN L  +  + +G LT L  + + +NH+    P  
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 446 FCQLDWLQILDISDNNIS 463
              L  +   D ++  I 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-26
 Identities = 73/399 (18%), Positives = 128/399 (32%), Gaps = 81/399 (20%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
               L        ++ + L     +        ++   I     LT     L+ L+L+  
Sbjct: 25  IRAVLQKASVTDVVTQEEL---ESITKLVVAGEKVA-SIQGIEYLT----NLEYLNLNGN 76

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                   P+ +   L  L +  N       ++    L +L    ++ + +    P +  
Sbjct: 77  QITDI--SPLSNLVKLTNLYIGTNKITDISALQN---LTNLRELYLNEDNISDISPLA-- 129

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
                   NLT +  L L  NH + ++   LS    L  L +  + +    P  + NLT 
Sbjct: 130 --------NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
           L  + +  N +E   P     L  L       N I+           I  +  ++ L+ L
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT----------DITPVANMTRLNSL 226

Query: 488 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKP 544
            + +N +    P  L  L+QL  L++  N +   I      T L       N  S +   
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDIS-- 281

Query: 545 FEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG 604
                   N                            LS L+ + L+ N+L       IG
Sbjct: 282 -----VLNN----------------------------LSQLNSLFLNNNQLGNEDMEVIG 308

Query: 605 NLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
            LT +  L LS N++T   P   + L    + D +   +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (275), Expect = 4e-26
 Identities = 70/408 (17%), Positives = 136/408 (33%), Gaps = 82/408 (20%)

Query: 265 PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP-IHSHKSL 323
           P  + +           +   +T+   L      +  L ++   G+    +  I    +L
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQEE-LE----SITKLVVA---GEKVASIQGIEYLTNL 68

Query: 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL 383
             L+++ N      P+     L  L+   I  N +  +  S+ +        NLTN+R L
Sbjct: 69  EYLNLNGNQITDISPLSN---LVKLTNLYIGTNKI--TDISALQ--------NLTNLREL 115

Query: 384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP 443
            L E++     P  L+    +  L L  N+        L N+TGL ++ + ++ ++   P
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 444 VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC 503
                L  L  L ++ N I            I  +  L+ L +     N +    P  + 
Sbjct: 173 --IANLTDLYSLSLNYNQIE----------DISPLASLTSLHYFTAYVNQITDITP--VA 218

Query: 504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEK 560
            + +L  L + +N +   + P    + L       N  S ++   +              
Sbjct: 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDIN-AVK-------------- 262

Query: 561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT 620
                                L+ L  +++  N++       + NL+++  L L++N L 
Sbjct: 263 --------------------DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 621 GTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
                    L     L LS N +    P  L  L+      FA   + 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 4e-25
 Identities = 67/493 (13%), Positives = 143/493 (29%), Gaps = 148/493 (30%)

Query: 128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEI 187
                      N   +     L+      L    +    DV   +   ++  L +   ++
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKV 56

Query: 188 DNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN 247
            ++   QG  +  +LE+L+++   I   +        ++  L +L +            N
Sbjct: 57  ASI---QGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGT----------N 98

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
           ++                L N + L+  +   +                  +  +S    
Sbjct: 99  KI-----------TDISALQNLTNLRELYLNED-----------------NISDIS---- 126

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                   P+ +   +  L++  N+        + + +  L+   ++ + +    P +  
Sbjct: 127 --------PLANLTKMYSLNLGANHNLS-DLSPLSN-MTGLNYLTVTESKVKDVTPIA-- 174

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
                   NLT++  L L  N      P  L+    L       N ++   P  + N+T 
Sbjct: 175 --------NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
           L  + +  N +    P     L  L  L+I  N IS           I  +  L+ L  L
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS----------DINAVKDLTKLKML 270

Query: 488 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEI 547
            +  N +       L  L+QL  L L++N L                             
Sbjct: 271 NVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG------------------- 309

Query: 548 SFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607
                                             L+ L+ + LS N +      P+ +L+
Sbjct: 310 ----------------------------------LTNLTTLFLSQNHITD--IRPLASLS 333

Query: 608 RIQILNLSHNNLT 620
           ++   + ++  + 
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (266), Expect = 6e-25
 Identities = 70/395 (17%), Positives = 133/395 (33%), Gaps = 74/395 (18%)

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCI 337
               I+ +I     L     +     L          +     +S+  L V+        
Sbjct: 8   LPAPIN-QIFPDADLA----EGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASIQ 60

Query: 338 PVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS 397
            +E    L +L   N++ N +    P S          NL  +  L +  N        +
Sbjct: 61  GIEY---LTNLEYLNLNGNQITDISPLS----------NLVKLTNLYIGTNKI--TDISA 105

Query: 398 LSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI 457
           L     L+ LYLN +N+S   P  L NLT +  + +  NH    +      +  L  L +
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTV 162

Query: 458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN 517
           +++ +            +  I  L+ L  L L +N +E   P  L  L  L       N 
Sbjct: 163 TESKVK----------DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 518 LHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTY 577
           +   I P    T L+     N+ +     ++                             
Sbjct: 211 ITD-ITPVANMTRLNSLKIGNNKITDLSPLAN---------------------------- 241

Query: 578 QGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLD 637
               LS L+ +++  N++       + +LT++++LN+  N ++    S  + L    +L 
Sbjct: 242 ----LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672
           L+ N+L  +    +  L        + N+++   P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 4e-18
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 54/269 (20%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
              L      ++   P    +L      ++ K  +   +  E  +L+ +  L ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                     SI+ I  L+ L +L L  N +    P  L  L +L  L +  N +   I 
Sbjct: 58  ----------SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS 104

Query: 524 PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS 583
                T L E Y N  ++     ++                                 L+
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLAN--------------------------------LT 132

Query: 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
            +  ++L  N  +  + P + N+T +  L ++ + +    P   + L    +L L+YN++
Sbjct: 133 KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189

Query: 644 NGKIPRQLVELNAFVVFSFACNNLSGKIP 672
               P  L  L +   F+   N ++   P
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (291), Expect = 2e-28
 Identities = 49/355 (13%), Positives = 101/355 (28%), Gaps = 55/355 (15%)

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
            H       L    +         +          + +         +S    + ++   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 377 -------------LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLG 423
                              L L       + P    +   L+ + ++   L  ++P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HLLSIEQINGLS 482
              GL+ + + +N L   +P     L+ L+ L I        LP       +  +  GL 
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESY-NNNSS 540
            L  L L    +   +P  +  L  L+ L + ++ L  L  P  ++   L E      ++
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTA 241

Query: 541 LDK-PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI 599
           L   P                                      + L  + L     +  +
Sbjct: 242 LRNYPPIFGG--------------------------------RAPLKRLILKDCSNLLTL 269

Query: 600 PPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVEL 654
           P  I  LT+++ L+L        +PS  ++L A   + +  +        + V  
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 6e-24
 Identities = 54/342 (15%), Positives = 104/342 (30%), Gaps = 49/342 (14%)

Query: 198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWT---LNQVLWLSN 254
           H    E+L          +  L+   + +   +    ++ +  + +W     N     + 
Sbjct: 10  HSSGRENLYFQ------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 255 NHFRIPISPDPLFN--HSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL--------SL 304
               +  + D L +            +  +              F+L  L         L
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGL 116

Query: 305 SSGYGDGPFRLP--IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI 362
                     LP  +     L  L ++ N  +  +P  I   L  L   +I        +
Sbjct: 117 ME--------LPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTEL 166

Query: 363 PSSFEGHMFSKNF-NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW 421
           P        S     L N++ L LE       +P S++    LK L + N+ LS  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481
           + +L  L+ + +         P  F     L+ L + D +   +LP          I+ L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--------LDIHRL 276

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
           + L  L L        +P  +  L    ++ +  +    L  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 4e-21
 Identities = 46/300 (15%), Positives = 81/300 (27%), Gaps = 40/300 (13%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT--GLQHIIM 433
                        H       S       +        L       L + T  G   + +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSN----NPQIETRTGRALK-ATADLLEDATQPGRVALEL 88

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
               L    P +  +L  LQ + I    +   LP        + +   +GL  L LA N 
Sbjct: 89  RSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELP--------DTMQQFAGLETLTLARNP 138

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553
           L   +P  +  LN+L+ L +        +P    +T     +    +L            
Sbjct: 139 LR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS-----LRLEW 192

Query: 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN 613
           T   +      I                L  L  + +  + L   + P I +L +++ L+
Sbjct: 193 T--GIRSLPASIAN--------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE 673
           L         P  F      + L L        +P  +  L               ++P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 47/350 (13%), Positives = 103/350 (29%), Gaps = 62/350 (17%)

Query: 121 EVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180
            +++       D +               ++ +    +   L+ + D+ E  +      L
Sbjct: 31  VLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240
           +++   +     P        L+H+ +           L  + ++M     L        
Sbjct: 87  ELRSVPLPQF--PDQAFRLSHLQHMTIDA-------AGLMELPDTMQQFAGL-------- 129

Query: 241 NDSWTLNQVLWLSNNHFR-IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQL 299
                  + L L+ N  R +P S   + + +RL+                        +L
Sbjct: 130 -------ETLTLARNPLRALPAS---IASLNRLRELSIRACP----------------EL 163

Query: 300 KSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD 359
             L       D           +L+ L +     +  +P  I + L +L    I  + L 
Sbjct: 164 TELPEPLASTDAS--GEHQGLVNLQSLRLEWTGIRS-LPASIAN-LQNLKSLKIRNSPLS 219

Query: 360 GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP 419
            ++  +          +L  +  L L     +   P        LK L L + +    +P
Sbjct: 220 -ALGPAIH--------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 469
             +  LT L+ + +        +P    QL    I+ +   ++   L   
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 34/274 (12%), Positives = 67/274 (24%), Gaps = 77/274 (28%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
            + LY   +         L       +    + H            +  QI   +   + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
            +        +        G   L L    L  + P Q   L+ LQ + +          
Sbjct: 70  -ATADLLEDAT------QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI---------- 111

Query: 524 PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS 583
                            L  P  +                                   +
Sbjct: 112 ----------DAAGLMEL--PDTMQQ--------------------------------FA 127

Query: 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAY---------R 634
            L  + L+ N L   +P  I +L R++ L++        +P   +  +A          +
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 635 NLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
           +L L +  +   +P  +  L          + LS
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 24/193 (12%), Positives = 45/193 (23%), Gaps = 35/193 (18%)

Query: 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSS 540
            SG  +L    +         L    +    D +  +                +     +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP 600
                E +                                       ++L    L    P
Sbjct: 71  TADLLEDA--------------------------------TQPGRVALELRSVPLP-QFP 97

Query: 601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF 660
                L+ +Q + +    L   +P T  +      L L+ N L   +P  +  LN     
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155

Query: 661 SFACNNLSGKIPE 673
           S        ++PE
Sbjct: 156 SIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 33/303 (10%), Positives = 85/303 (28%), Gaps = 86/303 (28%)

Query: 96  QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSL 155
             L+ +++ A  +             + +   L+   L+ N    ++ +S+  L+ +R L
Sbjct: 104 SHLQHMTIDAAGLM-------ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLREL 155

Query: 156 KLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALN 215
            +                   L  L      + +           +L+ L + +      
Sbjct: 156 SIRAC--------------PELTELP---EPLASTDASGEHQGLVNLQSLRLEW------ 192

Query: 216 TNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIF 275
              ++ +  S+ +L++L               + L + N+          + +  +L+  
Sbjct: 193 -TGIRSLPASIANLQNL---------------KSLKIRNSPLS--ALGPAIHHLPKLEEL 234

Query: 276 HAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQG 335
                                  L++     G               L+ L + + +   
Sbjct: 235 DLRGCT----------------ALRNYPPIFGG------R-----APLKRLILKDCSNLL 267

Query: 336 CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP 395
            +P++I   L  L   ++        +PS            L     +L+   H   ++ 
Sbjct: 268 TLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIA--------QLPANCIILV-PPHLQAQLD 317

Query: 396 QSL 398
           Q  
Sbjct: 318 QHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 29/156 (18%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNS---------FNNSILSS 145
           F  LE+L+L+ N +        A    +  LN L+   +              +      
Sbjct: 126 FAGLETLTLARNPLR-------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
              L +++SL+L +  +  S+      +  NL+ L ++ + +  L       H   LE L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEEL 234

Query: 206 DMSYAHIALNTNFLQIIGES---MPSLKHLSLSNFS 238
           D+           L+           LK L L + S
Sbjct: 235 DLR------GCTALRNYPPIFGGRAPLKRLILKDCS 264

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 7e-27
 Identities = 62/419 (14%), Positives = 125/419 (29%), Gaps = 62/419 (14%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
            N  K+  ++ +S   ++ S      +V+ L LS N L   I   +   F  LE+L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN---FSPSN 241
           N +             +L  LD++        N++Q +    PS++ L  +N      S 
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNN-------NYVQELLV-GPSIETLHAANNNISRVSC 116

Query: 242 DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS 301
                 + ++L+NN   + +        SR++      NEI        ++         
Sbjct: 117 SRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEI-------DTVNFAEL---- 164

Query: 302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
                            S  +L  L++  N     +  ++      L   ++S N L   
Sbjct: 165 ---------------AASSDTLEHLNLQYNFIYD-VKGQVV--FAKLKTLDLSSNKLA-F 205

Query: 362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS-GKIPQ 420
           +   F+        +   V W+ L  N  V  I ++L     L+   L  N    G +  
Sbjct: 206 MGPEFQ--------SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 421 WLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING 480
           +      +Q +             E C +    +                  L   +   
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIALK--- 311

Query: 481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS 539
               + L    +  E  +  +     + + +D        +I           +     
Sbjct: 312 RKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (272), Expect = 5e-25
 Identities = 47/294 (15%), Positives = 93/294 (31%), Gaps = 54/294 (18%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           N    +   + ++     +       + +K L L+ N LS      L   T L+ + +  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL---------LSIEQINGLSGLSH 486
           N L   +      L  L+ LD+++N +   L     +         +S    +   G  +
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKN 124

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-----TALHESYNNNSSL 541
           + LA+N +     +     +++Q LDL  N +  +              L+  YN    +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
                                 ++                 + L  +DLS NK +  + P
Sbjct: 185 KG--------------------QVV---------------FAKLKTLDLSSNK-LAFMGP 208

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN 655
              +   +  ++L +N L   I       +   + DL  N  +    R     N
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 6e-25
 Identities = 60/440 (13%), Positives = 138/440 (31%), Gaps = 57/440 (12%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF----QLKSLS 303
           ++  ++++  +         +   +K      N +         ++A       +L+ L+
Sbjct: 13  KIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFTKLELLN 64

Query: 304 LSSGYGDGPFRL----PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD 359
           LSS        L     + S  +LR LD++NN  Q     E+  + PS+   + + N + 
Sbjct: 65  LSSN------VLYETLDLESLSTLRTLDLNNNYVQ-----ELL-VGPSIETLHAANNNI- 111

Query: 360 GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG-KI 418
             +  S               + + L  N               ++ L L  N +     
Sbjct: 112 SRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478
            +   +   L+H+ +  N +   +  +      L+ LD+S N ++  +   F        
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQ------- 211

Query: 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
              +G++ + L +N L   +   L     L+  DL  N  H      F++          
Sbjct: 212 -SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH 598
            ++ K    + +           ++   +      A           + +    ++    
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLP-APFADRLIALKRKEHALLSGQGSE-TER 327

Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP---RQLVELN 655
           +     N  R + ++         I     + +A   L+     L+ ++    R   EL+
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

Query: 656 AFVVFSFACNNLSGKIPELT 675
             +  +     L     E +
Sbjct: 388 GTLQQAVGQIELQHATEEQS 407

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 5e-22
 Identities = 47/325 (14%), Positives = 102/325 (31%), Gaps = 56/325 (17%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           EI Q+ ++    K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 453 QILDISDNNIS-----GSLPSCFHL-LS---IEQINGLSGLSHLILAHNNLEGEVPVQLC 503
           ++L++S N +       SL +   L L+   ++++     +  L  A+NN+   V     
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR- 118

Query: 504 GLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVE 559
                + + L++N +  L             L    N   +++     +           
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---------- 167

Query: 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL 619
                                    L  ++L  N +   +   +    +++ L+LS N L
Sbjct: 168 ----------------------SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

Query: 620 TGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS-GKIPELTAQF 678
              +   F        + L  NKL   I + L        F    N    G + +  ++ 
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 679 ATFNESSYKGNPFLCGLPLPICRSP 703
                 + +    L G     C  P
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 57/400 (14%), Positives = 109/400 (27%), Gaps = 39/400 (9%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSS 151
                 +E+L  + NNI         S    +R    K   L+ N             S 
Sbjct: 95  LLVGPSIETLHAANNNI---------SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 152 VRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH 211
           V+ L L  N ++     +   S + LE L+++ N I ++   +G   F  L+ LD+S   
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSS-- 200

Query: 212 IALNTNFLQIIGES---MPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISP 263
                N L  +G        +  +SL N        +       +   L  N F      
Sbjct: 201 -----NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 264 DPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSL 323
           D    + R++       +      E            +            RL     K  
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL 383
            LL    +  +  +  E  +        +         I                    L
Sbjct: 316 ALLSGQGSETER-LECEREN-QARQREIDALKEQYRTVIDQVTL--------RKQAKITL 365

Query: 384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM-PKNHLEGPI 442
             ++     ++         L G          ++       + LQ +    K + E  +
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 443 PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS 482
             +  Q + ++  D+  +  +        L  +     L+
Sbjct: 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (278), Expect = 8e-27
 Identities = 56/338 (16%), Positives = 106/338 (31%), Gaps = 56/338 (16%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           N    +   + ++     +       + +K L L+ N LS      L   T L+ + +  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL---------LSIEQINGLSGLSH 486
           N L   +      L  L+ LD+++N +   L     +         +S    +   G  +
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKN 124

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-----TALHESYNNNSSL 541
           + LA+N +     +     +++Q LDL  N +  +              L+  YN    +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
                                 ++                 + L  +DLS NKL   + P
Sbjct: 185 KG--------------------QVV---------------FAKLKTLDLSSNKLA-FMGP 208

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
              +   +  ++L +N L   I       +   + DL  N  +    R     N   V +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR-VQT 266

Query: 662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPI 699
            A   +  K+     +  T     + G      LP P 
Sbjct: 267 VAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 47/325 (14%), Positives = 102/325 (31%), Gaps = 56/325 (17%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           EI Q+ ++    K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 453 QILDISDNNIS-----GSLPSCFHL-LS---IEQINGLSGLSHLILAHNNLEGEVPVQLC 503
           ++L++S N +       SL +   L L+   ++++     +  L  A+NN+   V     
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR- 118

Query: 504 GLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVE 559
                + + L++N +  L             L    N   +++     +           
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---------- 167

Query: 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL 619
                                    L  ++L  N +   +   +    +++ L+LS N L
Sbjct: 168 ----------------------SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

Query: 620 TGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS-GKIPELTAQF 678
              +   F        + L  NKL   I + L        F    N    G + +  ++ 
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 679 ATFNESSYKGNPFLCGLPLPICRSP 703
                 + +    L G     C  P
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 56/333 (16%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
            N  K+  ++ +S   ++ S      +V+ L LS N L   I   +   F  LE+L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN---FSPSN 241
           N +             +L  LD++        N++Q +    PS++ L  +N      S 
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNN-------NYVQELLV-GPSIETLHAANNNISRVSC 116

Query: 242 DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKS 301
                 + ++L+NN   + +        SR++      NEI        ++         
Sbjct: 117 SRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEI-------DTVNFAEL---- 164

Query: 302 LSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
                            S  +L  L++  N     +  ++      L   ++S N L   
Sbjct: 165 ---------------AASSDTLEHLNLQYNFIYD-VKGQVV--FAKLKTLDLSSNKLA-F 205

Query: 362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS-GKIPQ 420
           +   F+        +   V W+ L  N  V  I ++L     L+   L  N    G +  
Sbjct: 206 MGPEFQ--------SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 421 WLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQ 453
           +      +Q +             E C +  L 
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 46/303 (15%), Positives = 102/303 (33%), Gaps = 52/303 (17%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF----QLKSLS 303
           ++  ++++  +         +   +K      N +         ++A       +L+ L+
Sbjct: 13  KIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFTKLELLN 64

Query: 304 LSSGYGDGPFRL----PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD 359
           LSS        L     + S  +LR LD++NN  Q     E+  + PS+   + + N + 
Sbjct: 65  LSSN------VLYETLDLESLSTLRTLDLNNNYVQ-----ELL-VGPSIETLHAANNNI- 111

Query: 360 GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG-KI 418
             +  S               + + L  N               ++ L L  N +     
Sbjct: 112 SRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI 478
            +   +   L+H+ +  N +   +  +      L+ LD+S N ++  +          + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMG--------PEF 210

Query: 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
              +G++ + L +N L   +   L     L+  DL  N  H      F++          
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 539 SSL 541
            ++
Sbjct: 270 QTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 46/318 (14%), Positives = 104/318 (32%), Gaps = 65/318 (20%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           ++A    PF +LE L+LS+N +          + ++  L+ L+  DL+ N      +  L
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL--------YETLDLESLSTLRTLDLNNNY-----VQEL 95

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
               S+ +L  + N +   +           + + +  N+I  L           +++LD
Sbjct: 96  LVGPSIETLHAANNNIS-RVS---CSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLD 150

Query: 207 MSYAHIALNTNFLQIIGESMPSLKHLSLSN----FSPSNDSWTLNQVLWLSNNHFRIPIS 262
           +    I    NF ++   S  +L+HL+L             +   + L LS+N  ++   
Sbjct: 151 LKLNEID-TVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KLAFM 206

Query: 263 PDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKS 322
                + + +      NN                 +L  +  +           +   ++
Sbjct: 207 GPEFQSAAGVTWISLRNN-----------------KLVLIEKA-----------LRFSQN 238

Query: 323 LRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT 378
           L   D+  N F  C  +         + +++   +           +         +   
Sbjct: 239 LEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 379 NV------RWLLLEENHF 390
           ++      R + L  +H 
Sbjct: 298 DLPAPFADRLIALGHHHH 315

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 1e-25
 Identities = 75/425 (17%), Positives = 139/425 (32%), Gaps = 70/425 (16%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
           L+   +  +        +     E   LNN K+     ++      + L     V  L L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
           +  ++E  ID   F   + ++ L M  N I  L  P  F +   L  L        L  N
Sbjct: 77  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLV-------LERN 127

Query: 218 FLQIIGESM-PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFH 276
            L  +   +  +   L                 L +SNN+    I  D     + L+   
Sbjct: 128 DLSSLPRGIFHNTPKL---------------TTLSMSNNNLER-IEDDTFQATTSLQNLQ 171

Query: 277 AYNNEIHAEITESHSLTAPTF-QLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDVSNNNFQ 334
             +N +         +       L   ++S         L  +    ++  LD S+N+  
Sbjct: 172 LSSNRLT-------HVDLSLIPSLFHANVSYN------LLSTLAIPIAVEELDASHNSIN 218

Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
             +    G +   L+   +  N L  +  +           N   +  + L  N     +
Sbjct: 219 V-VR---GPVNVELTILKLQHNNL--TDTAWLL--------NYPGLVEVDLSYNELEKIM 264

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
                K   L+ LY++NN L   +  +   +  L+ + +  NHL   +     Q D L+ 
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLEN 322

Query: 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 514
           L +  N+I  +L           ++    L +L L+HN+ +      L     +    + 
Sbjct: 323 LYLDHNSIV-TLK----------LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369

Query: 515 DNNLH 519
           D + H
Sbjct: 370 DADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.8 bits (244), Expect = 6e-22
 Identities = 71/401 (17%), Positives = 132/401 (32%), Gaps = 100/401 (24%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
           +++   N+  R  +    L +  ++++ +  + +I         +    F          
Sbjct: 48  KIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-------EIDTYAFA--------- 90

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                         +++ L +  N  +  +P  +   +P L+   +  N L     SS  
Sbjct: 91  -----------YAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-----SSLP 133

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
             +F    N   +  L +  N+       +      L+ L L++N L+  +   L  +  
Sbjct: 134 RGIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
           L H  +  N L             ++ LD S N+I+  +                 L+ L
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG----------PVNVELTIL 231

Query: 488 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDK 543
            L HNNL  +    L     L  +DLS N L  ++   F        L+ S N   +L+ 
Sbjct: 232 KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289

Query: 544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI 603
                                               + +  L  +DLS N  + H+    
Sbjct: 290 YG----------------------------------QPIPTLKVLDLSHNH-LLHVERNQ 314

Query: 604 GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
               R++ L L HN++     ST   L   +NL LS+N  +
Sbjct: 315 PQFDRLENLYLDHNSIVTLKLSTHHTL---KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 62/335 (18%), Positives = 114/335 (34%), Gaps = 40/335 (11%)

Query: 336 CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP 395
           CI     ++      +++ ++     +   FE      +  L N + +  + +       
Sbjct: 12  CID---SNLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPA 62

Query: 396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455
             L     ++ L LN+  +             +Q + M  N +    P  F  +  L +L
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 515
            +  N++S      FH            L+ L +++NNLE            LQ L LS 
Sbjct: 123 VLERNDLSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 516 NNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
           N L  +      +    + SYN  S+L  P  +                   E     N+
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE------------------ELDASHNS 216

Query: 575 YTY-QGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAY 633
               +G V   L+ + L  N L       + N   +  ++LS+N L   +   F K++  
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 634 RNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
             L +S N+L   +      +    V   + N+L 
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 3e-20
 Identities = 56/436 (12%), Positives = 131/436 (30%), Gaps = 113/436 (25%)

Query: 113 ENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLT--RLSSVRSLKLSYNRLEGSIDVKE 170
                   +     +   +D+  +     +        L++ + +    + +   +    
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSL 229
            DSF  +E+L++   +I+ +     F +  +++ L M +       N ++ +   +  ++
Sbjct: 65  LDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGF-------NAIRYLPPHVFQNV 116

Query: 230 KHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES 289
             L                VL L  N     +      N  +L      NN +       
Sbjct: 117 PLL---------------TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE------ 154

Query: 290 HSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLS 349
             +   TFQ                    +  SL+ L +S+N                  
Sbjct: 155 -RIEDDTFQ--------------------ATTSLQNLQLSSNRLT--------------- 178

Query: 350 CFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYL 409
                       +  S           + ++    +  N        +L+    ++ L  
Sbjct: 179 -----------HVDLS----------LIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 410 NNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 469
           ++N+++  +         L  + +  N+L             L  +D+S N +   +   
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHP 267

Query: 470 FHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNT 529
           F          +  L  L +++N L   + +    +  L++LDLS N+L  +        
Sbjct: 268 FV--------KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 530 ALHE---SYNNNSSLD 542
            L      +N+  +L 
Sbjct: 319 RLENLYLDHNSIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 68/418 (16%), Positives = 141/418 (33%), Gaps = 75/418 (17%)

Query: 59  NVECNNTTGRVIQLYLSNTRSMELEE---WYLNAYLFTPFQQLESLSLSANNIAGCVENE 115
           +++  +       + L+N + +  +      L A L   F+Q+E L+L+   I      E
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI------E 82

Query: 116 GASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175
              +      + ++   +  N+           +  +  L L  N L  S+    F +  
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141

Query: 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSLKHLSL 234
            L  L M  N ++ +     F    SL++L +S        N L  +  S+ PSL H ++
Sbjct: 142 KLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSS-------NRLTHVDLSLIPSLFHANV 193

Query: 235 SNFSPSNDSWTLN-QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
           S    S  +  +  + L  S+N   I +   P+     L I    +N +           
Sbjct: 194 SYNLLSTLAIPIAVEELDASHN--SINVVRGPVN--VELTILKLQHNNLT---------D 240

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
                                    ++  L  +D+S N  +  I       +  L    I
Sbjct: 241 TAWLL--------------------NYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYI 279

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S N L  ++    +         +  ++ L L  NH +  + ++  +   L+ LYL++N+
Sbjct: 280 SNNRLV-ALNLYGQ--------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQ---ILDISDNNISGSLPS 468
           +   +   L     L+++ +  N  +             +      + D +    +  
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDWD-----CNSLRALFRNVARPAVDDADQHCKIDY 379

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 2e-24
 Identities = 67/371 (18%), Positives = 125/371 (33%), Gaps = 70/371 (18%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
           +  R L L  NR++ +++  EF SF +LE L++  N +  +  P  F +  +L  L    
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLG--- 86

Query: 210 AHIALNTNFLQIIGESM-PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFN 268
               L +N L++I   +   L +L                 L +S N   I +      +
Sbjct: 87  ----LRSNRLKLIPLGVFTGLSNL---------------TKLDISENKIVI-LLDYMFQD 126

Query: 269 HSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDV 328
              LK     +N++         ++   F                 L      SL  L +
Sbjct: 127 LYNLKSLEVGDNDLV-------YISHRAFS---------------GLN-----SLEQLTL 159

Query: 329 SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEEN 388
              N    IP E    L  L    +    +     ++   + F     L  ++ L +   
Sbjct: 160 EKCNLTS-IPTEALSHLHGLIVLRLRHLNI-----NAIRDYSFK---RLYRLKVLEISHW 210

Query: 389 HFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQ 448
            ++  +  +      L  L + + NL+      + +L  L+ + +  N +         +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 449 LDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL 508
           L  LQ + +    ++   P  F         GL+ L  L ++ N L          +  L
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFR--------GLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 509 QLLDLSDNNLH 519
           + L L  N L 
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 55/347 (15%), Positives = 120/347 (34%), Gaps = 56/347 (16%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
             ++ DL  N               +  L+L+ N +  +++   F++  NL  L ++ N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN----FS 238
           +  +     F    +L  LD       ++ N + I+ +     + +LK L + +    + 
Sbjct: 92  LKLI-PLGVFTGLSNLTKLD-------ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 239 PSNDSWTLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPT 296
                  LN  + L L   +    I  + L +   L +    +  I       +++   +
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNI-------NAIRDYS 195

Query: 297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN 356
           F+               RL       L++L++S+  +   +         +L+  +I+  
Sbjct: 196 FK---------------RLY-----RLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHC 234

Query: 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG 416
            L     ++          +L  +R+L L  N         L +   L+ + L    L+ 
Sbjct: 235 NL-----TAVPYLAVR---HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
             P     L  L+ + +  N L       F  +  L+ L +  N ++
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 51/354 (14%)

Query: 343 DILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF 402
            I       ++  N +      +     F+   +  ++  L L EN      P + +  F
Sbjct: 29  GIPTETRLLDLGKNRI-----KTLNQDEFA---SFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
            L+ L L +N L          L+ L  + + +N +   +   F  L  L+ L++ DN++
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI 522
                  F        +GL+ L  L L   NL       L  L+ L +L L   N++ + 
Sbjct: 141 VYISHRAF--------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 523 PPFFYN-TALHESY-NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
              F     L     ++   LD          N                           
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--------------------------- 225

Query: 581 VLSLLSGIDLSCNKLIGHIPPP-IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
               L+ + ++    +  +P   + +L  ++ LNLS+N ++    S   +L   + + L 
Sbjct: 226 ----LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 640 YNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
             +L    P     LN   V + + N L+     +              NP  C
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 57/316 (18%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
           ++L L  N  +  ++ D   +   L+      N +        ++    F          
Sbjct: 35  RLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVS-------AVEPGAFN--------- 77

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                      +  +LR L + +N  +  IP+ +   L +L+  +IS N +         
Sbjct: 78  -----------NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-----VILL 120

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
            +MF    +L N++ L + +N  V    ++ S    L+ L L   NL+    + L +L G
Sbjct: 121 DYMFQ---DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL-PSCFHLLSIEQIN------- 479
           L  + +   ++       F +L  L++L+IS      ++ P+C + L++  ++       
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 480 --------GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN--- 528
                    L  L  L L++N +       L  L +LQ + L    L  + P  F     
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 529 -TALHESYNNNSSLDK 543
              L+ S N  ++L++
Sbjct: 298 LRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 45/284 (15%), Positives = 88/284 (30%), Gaps = 66/284 (23%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
            +P+ +      + L L  N +         +   L+ + + +N +    P  F  L  L
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
           + L +  N +         L+ +    GLS L+ L ++ N +   +      L  L+ L+
Sbjct: 83  RTLGLRSNRLK--------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134

Query: 513 LSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKS 572
           + DN+L  +    F                                              
Sbjct: 135 VGDNDLVYISHRAFSG-------------------------------------------- 150

Query: 573 NAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTFSKLE 631
                    L+ L  + L     +  IP     +L  + +L L H N+      +F +L 
Sbjct: 151 ---------LNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675
             + L++S+      +    +        S    NL+  +P L 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           +     +    L  L L   NI               RL  LK+ ++S   + +++  + 
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNI------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLD 206
               ++ SL +++  L  ++          L  L++  N I  +           L+ + 
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQ 278

Query: 207 MSYAHIALNTNFLQIIGESMPSLKHLSLSN 236
           +    +             +  L+ L++S 
Sbjct: 279 LVGGQL---AVVEPYAFRGLNYLRVLNVSG 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 3e-24
 Identities = 84/465 (18%), Positives = 156/465 (33%), Gaps = 102/465 (21%)

Query: 238 SPSNDSWTLNQVLWLSNNHFR-IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPT 296
           +P N S T  Q     +++   +P+      N      ++   +E         +     
Sbjct: 4   NPRNVSNTFLQEPLRHSSNLTEMPVE---AENVKSKTEYYNAWSEW------ERNAPPGN 54

Query: 297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI------------ 344
            + + +++S        RL     +    L+++N      +P     +            
Sbjct: 55  GEQREMAVS--------RLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLTE 105

Query: 345 -------LPSLSCFNISMNALDGSIPSSFEGHMFSKN--------FNLTNVRWLLLEENH 389
                  L SL   N ++ AL   +P   E    S N         N + ++ + ++ N 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 390 FVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQL 449
              ++P        L+ +   NN L  ++P+ L NL  L  I    N L+  +P      
Sbjct: 165 LK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLS- 216

Query: 450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQ 509
             L+ +   +N +            + ++  L  L+ +   +N L+  +P        L+
Sbjct: 217 --LESIVAGNNILE----------ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLE 260

Query: 510 LLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFT 569
            L++ DN L  L       T L  S N  S L +                     ++   
Sbjct: 261 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP-----------------NLYYLN 303

Query: 570 TKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSK 629
             SN       +   L  +++S NKLI  +P     L   + L  S N+L   +P     
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN 358

Query: 630 LEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPEL 674
           L   + L + YN L  + P     +          N+   ++PEL
Sbjct: 359 L---KQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 7e-24
 Identities = 95/532 (17%), Positives = 165/532 (31%), Gaps = 115/532 (21%)

Query: 121 EVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180
           E   + +   +  + + +  +          +   +L                      L
Sbjct: 29  EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHEL 76

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240
           ++    + +L  P+  PH   LE L  S        N L  + E   SLK L + N +  
Sbjct: 77  ELNNLGLSSL--PELPPH---LESLVASC-------NSLTELPELPQSLKSLLVDNNNLK 124

Query: 241 NDSWTLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298
             S      + L +SNN          L N S LKI    NN                  
Sbjct: 125 ALSDLPPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNN-----------------S 164

Query: 299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNAL 358
           LK L         P   P     SL  +   NN  +  +P E+ + LP L+      N+L
Sbjct: 165 LKKL---------PDLPP-----SLEFIAAGNNQLE-ELP-ELQN-LPFLTAIYADNNSL 207

Query: 359 DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKI 418
              +P               ++  ++   N    E    L     L  +Y +NN L   +
Sbjct: 208 K-KLPDL-----------PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TL 252

Query: 419 PQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL-LSIEQ 477
           P    +L  L    +  N+L   +P     L +L + +   + +S   P+ ++L  S  +
Sbjct: 253 PDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308

Query: 478 INGLSG----LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALH 532
           I  L      L  L +++N L  E+P       +L+ L  S N+L  + P    N   LH
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEV-PELPQNLKQLH 363

Query: 533 ESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSC 592
             YN       P                      E    ++       +   L  + +  
Sbjct: 364 VEYNPLREF--PDIPES----------------VEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 593 NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
           N L    P    ++     L ++   +           +   +    ++  +
Sbjct: 406 NPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (250), Expect = 2e-22
 Identities = 74/443 (16%), Positives = 140/443 (31%), Gaps = 99/443 (22%)

Query: 96  QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSF-------------NNSI 142
             LESL  S N++                L +L + + +  +              NN +
Sbjct: 91  PHLESLVASCNSLT-------ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143

Query: 143 --LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFK 200
             L  L   S ++ + +  N L+     K  D   +LE +    N+++ L       +  
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLEEL---PELQNLP 195

Query: 201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN----FSPSNDSWTLNQVLWLSNNH 256
            L  +           N L+ + +   SL+ +   N      P   +      ++  NN 
Sbjct: 196 FLTAIYADN-------NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 257 FRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP 316
             +   PD   +   L +   Y  ++                L  L +S     G   LP
Sbjct: 249 --LKTLPDLPPSLEALNVRDNYLTDLPELPQ----------SLTFLDVSENIFSGLSELP 296

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
                +L  L+ S+N  +      + D+ PSL   N+S N L   +P+            
Sbjct: 297 ----PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPAL----------- 335

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436
              +  L+   NH   E+P+       LK L++  N L  + P    ++  L+      N
Sbjct: 336 PPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM-----N 385

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
                +P     L   + L +  N +    P           +    +  L +    +  
Sbjct: 386 SHLAEVPELPQNL---KQLHVETNPLR-EFP-----------DIPESVEDLRMNSERVVD 430

Query: 497 EVPVQLCGLNQLQLLDLSDNNLH 519
                    ++L+      ++ H
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 43/257 (16%), Positives = 80/257 (31%), Gaps = 55/257 (21%)

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS- 482
           + T LQ  +   ++L   +PVE   +        + +    + P          ++ L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 483 ----GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
                   L L +  L   +P        L+ L  S N+L  L        +L    NN 
Sbjct: 68  CLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH 598
            +L                                       +  LL  + +S N+L   
Sbjct: 124 KALS-------------------------------------DLPPLLEYLGVSNNQLEK- 145

Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFV 658
             P + N + ++I+++ +N+L   +P     LE    +    N+L  ++P +L  L    
Sbjct: 146 -LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFLT 198

Query: 659 VFSFACNNLSGKIPELT 675
                 N+L        
Sbjct: 199 AIYADNNSLKKLPDLPL 215

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 9e-24
 Identities = 76/444 (17%), Positives = 143/444 (32%), Gaps = 70/444 (15%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
           L+   +  +        +     E   LNN K+     ++      + L     V  L L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
           +  ++E  ID   F   + ++ L M  N I  L  P  F +   L  L        L  N
Sbjct: 83  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLV-------LERN 133

Query: 218 FLQIIGESM-PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFH 276
            L  +   +  +   L                 L +SNN+    I  D     + L+   
Sbjct: 134 DLSSLPRGIFHNTPKL---------------TTLSMSNNNLER-IEDDTFQATTSLQNLQ 177

Query: 277 AYNNEIHAEITESHSLTAPTF-QLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDVSNNNFQ 334
             +N +         +       L   ++S         L  +    ++  LD S+N+  
Sbjct: 178 LSSNRL-------THVDLSLIPSLFHANVSY------NLLSTLAIPIAVEELDASHNSIN 224

Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
             +    G +   L+   +  N L  +  +           N   +  + L  N     +
Sbjct: 225 V-VR---GPVNVELTILKLQHNNL--TDTAWLL--------NYPGLVEVDLSYNELEKIM 270

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
                K   L+ LY++NN L   +  +   +  L+ + +  NHL   +     Q D L+ 
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLEN 328

Query: 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 514
           L +  N+I  +L           ++    L +L L+HN+ +      L     +    + 
Sbjct: 329 LYLDHNSIV-TLK----------LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 375

Query: 515 DNNLHGLIPPFFYNTALHESYNNN 538
           D + H  I     +    +  +  
Sbjct: 376 DADQHCKIDYQLEHGLCCKESDKP 399

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 8e-23
 Identities = 88/542 (16%), Positives = 177/542 (32%), Gaps = 97/542 (17%)

Query: 116 GASSREVTRLNNLKMFDLSGNSFNNSILSSLT--RLSSVRSLKLSYNRLEGSIDVKEFDS 173
                +     +   +D+  +     +        L++ + +    + +   +     DS
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDS 73

Query: 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS-LKHL 232
           F  +E+L++   +I+ +     F +  +++ L M +       N ++ +   +   +  L
Sbjct: 74  FRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGF-------NAIRYLPPHVFQNVPLL 125

Query: 233 SLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSL 292
                           VL L  N     +      N  +L      NN +         +
Sbjct: 126 ---------------TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-------RI 162

Query: 293 TAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFN 352
              TFQ                    +  SL+ L +S+N     + +    ++PSL   N
Sbjct: 163 EDDTFQ--------------------ATTSLQNLQLSSNRLT-HVDL---SLIPSLFHAN 198

Query: 353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN 412
           +S N L  ++                 V  L    N     +   +     L  L L +N
Sbjct: 199 VSYNLLS-TLA------------IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242

Query: 413 NLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL 472
           NL+     WL N  GL  + +  N LE  +   F ++  L+ L IS+N +  +L      
Sbjct: 243 NLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ- 298

Query: 473 LSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TAL 531
                   +  L  L L+HN+L   V       ++L+ L L  N++  L     +    L
Sbjct: 299 -------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350

Query: 532 HESYN--NNSSLDKPFE--ISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG 587
             S+N  + +SL   F         + ++  +           K +   Y  R+L  ++ 
Sbjct: 351 TLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

Query: 588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI 647
             +        +    G  +    +N   +            L+    L+   N+L  ++
Sbjct: 411 TSVVEK-----VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEV 465

Query: 648 PR 649
            +
Sbjct: 466 QQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 60/329 (18%), Positives = 113/329 (34%), Gaps = 39/329 (11%)

Query: 343 DILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF 402
           ++      +++ ++     +   FE      +  L N + +  + +         L    
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFE------DITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNN 461
            ++ L LN+  +             +Q + M  N +   +P   F  +  L +L +  N+
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND 134

Query: 462 ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521
           +S      FH            L+ L +++NNLE            LQ L LS N L  +
Sbjct: 135 LSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 522 IPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTY-QG 579
                 +    + SYN  S+L  P  +                   E     N+    +G
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIPIAVE------------------ELDASHNSINVVRG 228

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
            V   L+ + L  N L       + N   +  ++LS+N L   +   F K++    L +S
Sbjct: 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 640 YNKLNGKIPRQLVELNAFVVFSFACNNLS 668
            N+L   +      +    V   + N+L 
Sbjct: 287 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 73/488 (14%), Positives = 158/488 (32%), Gaps = 74/488 (15%)

Query: 59  NVECNNTTGRVIQLYLSNTRSMELEE---WYLNAYLFTPFQQLESLSLSANNIAGCVENE 115
           +++  +       + L+N + +  +      L A L   F+Q+E L+L+   I      E
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI------E 88

Query: 116 GASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN 175
              +      + ++   +  N+           +  +  L L  N L  S+    F +  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147

Query: 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSLKHLSL 234
            L  L M  N ++ +     F    SL++L +S        N L  +  S+ PSL H ++
Sbjct: 148 KLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSS-------NRLTHVDLSLIPSLFHANV 199

Query: 235 SNFSPSNDSWTLN-QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
           S    S  +  +  + L  S+N   I +   P+     L I    +N +           
Sbjct: 200 SYNLLSTLAIPIAVEELDASHN--SINVVRGPVN--VELTILKLQHNNLT---------D 246

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
                                    ++  L  +D+S N  +  I       +  L    I
Sbjct: 247 TAWLL--------------------NYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYI 285

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S N L  ++              +  ++ L L  NH +  + ++  +   L+ LYL++N+
Sbjct: 286 SNNRL-VALNLYG--------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
           +   +   L     L+++ +  N  +             +  +++   +  +   C    
Sbjct: 336 IV-TLK--LSTHHTLKNLTLSHNDWD-----CNSLRALFR--NVARPAVDDADQHCKIDY 385

Query: 474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE 533
            +E            L        +   +  + + Q    + + ++ +     Y T    
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 534 SYNNNSSL 541
                +  
Sbjct: 446 VPLQGNEQ 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 82/544 (15%), Positives = 157/544 (28%), Gaps = 70/544 (12%)

Query: 86  YLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN---SFNNSI 142
           YL  ++F     L  L L  N++                   L    +S N      +  
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 143 LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSL 202
             + T L   ++L+LS NRL   +D        +L   ++  N +  L          ++
Sbjct: 167 FQATTSL---QNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIPIAV 213

Query: 203 EHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN----QVLWLSNNHFR 258
           E LD S+  I        + G     L  L L + + ++ +W LN      + LS N   
Sbjct: 214 EELDASHNSIN------VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 267

Query: 259 IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS----SGYGDGPFR 314
             I   P     RL+  +  NN + A       +      LK L LS            +
Sbjct: 268 K-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIP----TLKVLDLSHNHLLHVERNQPQ 322

Query: 315 LPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKN 374
                   L  L + +N+    + +       +L    +S N  D +   +   ++    
Sbjct: 323 FD-----RLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373

Query: 375 FNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP 434
            +  +    +  +        +S          Y+   ++  K+ +  G  +    I   
Sbjct: 374 VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSV 433

Query: 435 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
           ++            L   + L+   N +   +      L+ EQI     L  L    +  
Sbjct: 434 QSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ----LTNEQIQQEQLLQGLHAEIDTN 489

Query: 495 EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNT 554
                +   GL +                        H        L +      +    
Sbjct: 490 LRRYRLPKDGLARSSDNLNKVFT--------------HLKERQAFKLRETQARRTEADAK 535

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNL 614
           +K+ E    E      + +      +   L     L   K+         N    ++ + 
Sbjct: 536 QKETEDLEQENIALEKQLDNKR--AKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHH 593

Query: 615 SHNN 618
            H++
Sbjct: 594 HHHH 597

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 9e-24
 Identities = 78/526 (14%), Positives = 166/526 (31%), Gaps = 80/526 (15%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
              + ++S N  +    S +  LS +R L +S+NR++  +D+  F     LE LD+  N+
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMP--SLKHLSLSNFSPSNDSW 244
           +  +          +L+HLD       L+ N    +       ++  L            
Sbjct: 81  LVKI----SCHPTVNLKHLD-------LSFNAFDALPICKEFGNMSQL------------ 117

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
              + L LS  H     S  P+ + +  K+          +          T  L  +  
Sbjct: 118 ---KFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
           ++        + + +  +L L ++            +  +    +   +S   L+    +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVG-----EIPQSLSKCFLLKGLYLNNNNLSGKIP 419
                   +    T V +  +      G     +   S +    L    + ++       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN 479
                 + +       +       +   ++     LD S+N ++ ++             
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-------- 345

Query: 480 GLSGLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNNLHGLIPP--FFYNTALHESY 535
            L+ L  LIL  N L+   ++      +  LQ LD+S N++          +  +L    
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL 595
            +++ L    +  F                               +   +  +DL  NK+
Sbjct: 406 MSSNILT---DTIFR-----------------------------CLPPRIKVLDLHSNKI 433

Query: 596 IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
              IP  +  L  +Q LN++ N L       F +L + + + L  N
Sbjct: 434 -KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 2e-23
 Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 45/440 (10%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN-SILSSLTRLS 150
           F   Q+LE L LS N +                  NLK  DLS N+F+   I      +S
Sbjct: 65  FKFNQELEYLDLSHNKL---------VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA 210
            ++ L LS   LE S          +L +  +     +     +     +      +   
Sbjct: 116 QLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 211 HIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
               N  F  I+  S+ ++ +L LSN     +    +  L +       P   +   N+ 
Sbjct: 172 FP-TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSN 330
                    N     +      T   F + ++ L        F     S K+L +  V +
Sbjct: 231 ET-----TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 331 NNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHF 390
           + F       I +I  +++  N +++     +              ++    L    N  
Sbjct: 286 DVFGF-PQSYIYEIFSNMNIKNFTVSGT-RMVHMLCPSK-------ISPFLHLDFSNNLL 336

Query: 391 VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLG---NLTGLQHIIMPKNHLEGPIPVEFC 447
              + ++      L+ L L  N L  ++ +       +  LQ + + +N +        C
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 448 -QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN 506
                L  L++S N ++ ++  C              +  L L  N ++  +P Q+  L 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL----------PPRIKVLDLHSNKIK-SIPKQVVKLE 444

Query: 507 QLQLLDLSDNNLHGLIPPFF 526
            LQ L+++ N L  +    F
Sbjct: 445 ALQELNVASNQLKSVPDGIF 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 2e-23
 Identities = 84/452 (18%), Positives = 151/452 (33%), Gaps = 54/452 (11%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREV-TRLNNLKMFDLSGNSFNNSILSSLTRLS 150
                +L  L +S N I             V      L+  DLS N            L 
Sbjct: 41  ILSLSKLRILIISHNRIQ-------YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNL- 92

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA 210
             + L LS+N  +     KEF + + L+ L +    ++             + HL++S  
Sbjct: 93  --KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKV 143

Query: 211 HIALNTNFLQII-GESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
            + L   + +    E +      SL    P+N            +    + +        
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE---------FHFILDVSVKTVANLEL 194

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDV 328
           S +K     N   +     +   T P     +L+      +   R+  +  H ++    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 329 SNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384
           SN   QG +     D     L +LS   +  +         +      + F+  N++   
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY------EIFSNMNIKNFT 308

Query: 385 LEENHFVGE-IPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GP 441
           +     V    P  +S       L  +NN L+  + +  G+LT L+ +I+  N L+    
Sbjct: 309 VSGTRMVHMLCPSKISP---FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 442 IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ 501
           I     Q+  LQ LDIS N++S               +    L  L ++ N L   +   
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKK-------GDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 502 LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE 533
           L    ++++LDL  N +  +        AL E
Sbjct: 419 L--PPRIKVLDLHSNKIKSIPKQVVKLEALQE 448

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 5e-17
 Identities = 55/337 (16%), Positives = 113/337 (33%), Gaps = 27/337 (8%)

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
           I S   LR+L +S+N  Q  + + +      L   ++S N L   I              
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKISCH----------P 88

Query: 377 LTNVRWLLLEENHF----VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHII 432
             N++ L L  N F    + +   ++S+   LK L L+  +L       + +L   + ++
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 433 MPKNHLEGPIPVEF---CQLDWLQILDISDNNISGSLPSCF---HLLSIEQINGLSGLSH 486
           +           E       + L I+  ++      L         L +  I  +   + 
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFE 546
                + L             L  ++ + N+   ++   ++ T  + S +N     +   
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 547 ISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNL 606
             FD+  T  K       + +      +Y Y+    S ++  + + +            +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI--FSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 607 TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           +    L+ S+N LT T+      L     L L  N+L
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 46/268 (17%), Positives = 96/268 (35%), Gaps = 19/268 (7%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
              L ++ N +S      + +L+ L+ +I+  N ++      F     L+ LD+S N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNNLHGLI 522
             +            +    L HL L+ N  +   +  +   ++QL+ L LS  +L    
Sbjct: 83  -KISC----------HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 523 PPFFYNTALHESYNNNSSLDKPFEISFDFRN---TEKKVEKKSHEIFEFTTKSNAYTYQG 579
                +  + +            E     ++       +   +++ F F    +  T   
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             LS +  + L  NK    +       T  ++ NL+ NN+  T  S    L+   +  + 
Sbjct: 192 LELSNIKCV-LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 640 YNKLNGKIPRQLVELNAFVVFSFACNNL 667
           Y  ++     +L     F  F ++  +L
Sbjct: 251 YFSISNV---KLQGQLDFRDFDYSGTSL 275

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 45/271 (16%), Positives = 92/271 (33%), Gaps = 43/271 (15%)

Query: 69  VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNL 128
           V    +SN +     ++    Y  T  + L    + ++            S      +N+
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP------QSYIYEIFSNM 302

Query: 129 KMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEID 188
            + + + +      +   +++S    L  S N L      +       LE L ++ N++ 
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLK 361

Query: 189 NL-VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN----FSPSNDS 243
            L  + +     KSL+ LD+S     ++ +  +       SL  L++S+     +     
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS 303
               +VL L +N  +    P  +     L+  +  +N                 QLKS+ 
Sbjct: 420 PPRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASN-----------------QLKSVP 460

Query: 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ 334
                 DG F        SL+ + +  N + 
Sbjct: 461 ------DGIF----DRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 22/303 (7%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
                L + +N+        +     L+ L +++N +             L+++ +  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 438 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE 497
           L     +       L+ LD+S N    +LP C      ++   +S L  L L+  +LE  
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFD-ALPIC------KEFGNMSQLKFLGLSTTHLEKS 130

Query: 498 VPVQLCGLNQLQLLDLSDNNLHGLIPP----FFYNTALHESYNNNSSLDKPFEISFDFRN 553
             + +  LN  ++L +          P     F   +LH  +  N       ++S     
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 554 TEKKVEKK---SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQ 610
             +    K         +     A       LS L+  ++            +   T + 
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 611 ILNLSHNNLTGTIPS-----TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN 665
             ++S+  L G +       + + L+A     +  +             +   + +F  +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 666 NLS 668
              
Sbjct: 311 GTR 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSY 640
              L  +DLS NKL+            ++ L+LS N      I   F  +   + L LS 
Sbjct: 68  NQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIP 672
             L       +  LN   V          K  
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 4e-23
 Identities = 75/364 (20%), Positives = 117/364 (32%), Gaps = 87/364 (23%)

Query: 175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSL 234
           N   VL++  + +  L  P        +  L +         N L  +    P L+ L +
Sbjct: 40  NGNAVLNVGESGLTTL--PDCL--PAHITTLVIPD-------NNLTSLPALPPELRTLEV 88

Query: 235 SNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTA 294
           S           NQ+  L          P        L IF      + A  +    L  
Sbjct: 89  SG----------NQLTSL----------PVLPPGLLELSIFSNPLTHLPALPSGLCKLWI 128

Query: 295 PTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS 354
              QL SL +                  L+ L VS+N     +P    + L  L  +N  
Sbjct: 129 FGNQLTSLPVLPP--------------GLQELSVSDNQLA-SLPALPSE-LCKLWAYN-- 170

Query: 355 MNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL 414
            N L  S+P              + ++ L + +N     +P   S+   L  L+  NN L
Sbjct: 171 -NQLT-SLPML-----------PSGLQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRL 213

Query: 415 SGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS 474
           +  +P     L  L   I+  N L   +PV   +L   + L +S N ++ SLP       
Sbjct: 214 T-SLPALPSGLKEL---IVSGNRLTS-LPVLPSEL---KELMVSGNRLT-SLP------- 257

Query: 475 IEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHES 534
                  SGL  L +  N L   +P  L  L+    ++L  N L                
Sbjct: 258 ----MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 535 YNNN 538
           Y+  
Sbjct: 313 YSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 2e-22
 Identities = 69/331 (20%), Positives = 111/331 (33%), Gaps = 68/331 (20%)

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
           ++    +    +L+V  +     +P  +      ++   I  N L  S+P+         
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL-------- 79

Query: 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM 433
                 +R L +  N     +P        L        +L           +GL  + +
Sbjct: 80  ---PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWI 128

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             N L   +PV       LQ L +SDN ++ SLP              S L  L   +N 
Sbjct: 129 FGNQLTS-LPVLPPG---LQELSVSDNQLA-SLP-----------ALPSELCKLWAYNNQ 172

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFR 552
           L   +P+     + LQ L +SDN L  L P        L    N  +SL  P   S    
Sbjct: 173 LT-SLPML---PSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTSL--PALPS---- 221

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                       + E     N  T    + S L  + +S N+L   +P     L     L
Sbjct: 222 -----------GLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLLS---L 266

Query: 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           ++  N LT  +P +   L +   ++L  N L
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 67/406 (16%), Positives = 119/406 (29%), Gaps = 97/406 (23%)

Query: 124 RLNNLKMFDLSGNSFNN---SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180
             N   + ++  +        + + +T L       +  N L  S+          L  L
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAHITTLV------IPDNNLT-SLP----ALPPELRTL 86

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN--FS 238
           ++  N++ +L  P   P    L        H+                L  L +     +
Sbjct: 87  EVSGNQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLT 134

Query: 239 PSNDSWTLNQVLWLSNNHF-RIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF 297
                    Q L +S+N    +P  P      S L    AYNN                 
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLPALP------SELCKLWAYNN----------------- 171

Query: 298 QLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNA 357
           QL SL +                  L+ L VS+N     +P    + L  L  +N  + +
Sbjct: 172 QLTSLPMLPS--------------GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTS 215

Query: 358 LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK 417
           L                   + ++ L++  N     +P   S+   LK L ++ N L+  
Sbjct: 216 LPALP---------------SGLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-S 255

Query: 418 IPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQ 477
           +P     L     + + +N L   +P     L     +++  N +S             +
Sbjct: 256 LPMLPSGLL---SLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERTLQAL----RE 306

Query: 478 INGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
           I    G S  I+  +      P +   L+      L         P
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 66/332 (19%), Positives = 103/332 (31%), Gaps = 68/332 (20%)

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
            LP      +  L + +NN    +P         L    +S N L  S+P          
Sbjct: 54  TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQLT-SLPVLPP------ 101

Query: 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM 433
              L  +        H              L  L++  N L+  +P     L  L    +
Sbjct: 102 --GLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQELS---V 148

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             N L   +P    +L     L   +N ++ SLP              SGL  L ++ N 
Sbjct: 149 SDNQLAS-LPALPSEL---CKLWAYNNQLT-SLP-----------MLPSGLQELSVSDNQ 192

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFR 552
           L   +P      ++L  L   +N L  L P        L  S N  +SL  P   S    
Sbjct: 193 LA-SLPT---LPSELYKLWAYNNRLTSL-PALPSGLKELIVSGNRLTSL--PVLPS---- 241

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                      E+ E     N  T    + S L  + +  N+L   +P  + +L+    +
Sbjct: 242 -----------ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
           NL  N L+     T   L    +       + 
Sbjct: 290 NLEGNPLS---ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 54/269 (20%), Positives = 87/269 (32%), Gaps = 74/269 (27%)

Query: 392 GEIPQSLSKCFL--LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQL 449
             + Q +  C       L +  + L+  +P  L     +  +++P N+L   +P    +L
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPEL 83

Query: 450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQ 509
              + L++S N ++ SLP            GL  LS       +L           + L 
Sbjct: 84  ---RTLEVSGNQLT-SLP--------VLPPGLLELSIFSNPLTHLPAL-------PSGLC 124

Query: 510 LLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568
            L +  N L  L P        L  S N  +SL  P   S                    
Sbjct: 125 KLWIFGNQLTSL-PVLPPGLQELSVSDNQLASL--PALPSE------------------- 162

Query: 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS 628
                           L  +    N+L   +P     L     L++S N L  ++P+  S
Sbjct: 163 ----------------LCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPS 201

Query: 629 KLEAYRNLDLSYNKLNG--KIPRQLVELN 655
           +L     L    N+L     +P  L EL 
Sbjct: 202 EL---YKLWAYNNRLTSLPALPSGLKELI 227

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 60/282 (21%), Positives = 91/282 (32%), Gaps = 76/282 (26%)

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436
                 L + E+     +P  L     +  L + +NNL+  +P     L  L+   +  N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
            L   +PV    L  L I      ++                     L  L +  N L  
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLPALPSG---------------LCKLWIFGNQLT- 134

Query: 497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTE 555
            +PV       LQ L +SDN L  L P        L    N  +SL  P   S       
Sbjct: 135 SLPVLP---PGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSL--PMLPSG------ 182

Query: 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS 615
                                        L  + +S N+L   +P     L +   L   
Sbjct: 183 -----------------------------LQELSVSDNQLA-SLPTLPSELYK---LWAY 209

Query: 616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNG--KIPRQLVELN 655
           +N LT ++P+  S L   + L +S N+L     +P +L EL 
Sbjct: 210 NNRLT-SLPALPSGL---KELIVSGNRLTSLPVLPSELKELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 72/393 (18%), Positives = 111/393 (28%), Gaps = 105/393 (26%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
             +L +L +S N +        +       L  L +F           L +L   S +  
Sbjct: 80  PPELRTLEVSGNQLT-------SLPVLPPGLLELSIFSNPLTH-----LPAL--PSGLCK 125

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L +  N+L  S+          L+ L +  N++ +L  P        L  L         
Sbjct: 126 LWIFGNQLT-SLP----VLPPGLQELSVSDNQLASL--PALPSE---LCKLWAYN----- 170

Query: 215 NTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKI 274
             N L  +      L+ LS+S+          NQ   L++    +P  P      S L  
Sbjct: 171 --NQLTSLPMLPSGLQELSVSD----------NQ---LAS----LPTLP------SELYK 205

Query: 275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ 334
             AYNN                 +L SL                    L+ L VS N   
Sbjct: 206 LWAYNN-----------------RLTSLPALPS--------------GLKELIVSGNRLT 234

Query: 335 GCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI 394
             +PV        L    +S N L  S+P              + +  L +  N     +
Sbjct: 235 -SLPVLPS----ELKELMVSGNRLT-SLPML-----------PSGLLSLSVYRNQLT-RL 276

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEF--CQLDWL 452
           P+SL        + L  N LS +  Q L  +T       P    +          +   L
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLS 485
              D       G            Q +     S
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFS 369

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 67/245 (27%)

Query: 410 NNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 469
               +  K+   L    G   + + ++ L   +P        +  L I DNN++ SLP+ 
Sbjct: 26  GRAAVVQKMRACL--NNGNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT-SLPA- 78

Query: 470 FHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNT 529
                         L  L ++ N L   +PV   GL +L +      +L  L        
Sbjct: 79  ----------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGL---C 124

Query: 530 ALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGID 589
            L    N  +SL                                       +   L  + 
Sbjct: 125 KLWIFGNQLTSLP-------------------------------------VLPPGLQELS 147

Query: 590 LSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR 649
           +S N+L   +P     L +   L   +N LT ++P   S L   + L +S N+L   +P 
Sbjct: 148 VSDNQL-ASLPALPSELCK---LWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPT 198

Query: 650 QLVEL 654
              EL
Sbjct: 199 LPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
            +  + +++  + L   +P  +     I  L +  NNLT ++P+   +L   R L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675
           +L   +P     L    +FS    +L      L 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 47/177 (26%)

Query: 500 VQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKV 558
           ++ C  N   +L++ ++ L  L      + T L    NN +SL                 
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------------- 78

Query: 559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN 618
                                 +   L  +++S N+L   +P     L  + I +    +
Sbjct: 79  ----------------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 619 LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675
           L                L +  N+L   +P     L    V      +L     EL 
Sbjct: 116 LPALPSGL-------CKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELC 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 86/437 (19%), Positives = 151/437 (34%), Gaps = 75/437 (17%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI-LSSLTRLSSVRSLK 156
           +  + LS N+IA        +    +RL +L+   +   +    I  ++   LSS+  LK
Sbjct: 32  VNYVDLSLNSIAE------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 157 LSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMSYAHIALN 215
           L YN+    ++   F+   NLEVL + +  +D  V+    F    SLE L        L 
Sbjct: 86  LDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV-------LR 137

Query: 216 TNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH---SRL 272
            N ++ I    P+   L++  F           VL L+ N  ++    +    +      
Sbjct: 138 DNNIKKI---QPASFFLNMRRF----------HVLDLTFN--KVKSICEEDLLNFQGKHF 182

Query: 273 KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNN 332
            +    +  +                +    L       PF+       S+  LD+S N 
Sbjct: 183 TLLRLSSITLQ--------------DMNEYWLGWEKCGNPFKN-----TSITTLDLSGNG 223

Query: 333 FQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK-------NFNLTNVRWLLL 385
           F+     +      + +     + +   ++ SSF    F             + V+   L
Sbjct: 224 FK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 386 EENHFV---GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI 442
            ++        +    +    L+ L L  N ++         LT L  + + +N L    
Sbjct: 283 SKSKIFALLKSVFSHFTD---LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 443 PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL 502
              F  LD L++LD+S N+I  +L         +   GL  L  L L  N L+       
Sbjct: 340 SRMFENLDKLEVLDLSYNHIR-ALGD-------QSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 503 CGLNQLQLLDLSDNNLH 519
             L  LQ + L  N   
Sbjct: 392 DRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 59/329 (17%), Positives = 115/329 (34%), Gaps = 31/329 (9%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS-SFEGHMFSKNFNLTNV 380
            +  +D+S N+    +       L  L    +        I + +F G        L+++
Sbjct: 31  HVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--------LSSL 81

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNL-SGKIPQ-WLGNLTGLQHIIMPKNHL 438
             L L+ N F+     + +    L+ L L   NL    +   +   LT L+ +++  N++
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 439 EGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS--GLSHLILAHNNLE 495
           +   P   F  +    +LD++ N +             +    L    ++   +    L 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE 555
            E          +  LDLS N     +   F++           ++      S    N+ 
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD-----------AIAGTKIQSLILSNSY 250

Query: 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNL 614
                  H  F      + +T++G   S +   DLS +K I  +   +  + T ++ L L
Sbjct: 251 NMGSSFGHTNF---KDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTL 306

Query: 615 SHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           + N +     + F  L     L+LS N L
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 6e-17
 Identities = 72/501 (14%), Positives = 138/501 (27%), Gaps = 134/501 (26%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
           + V  + LS N +   ++   F    +L+ L +++     ++    F    SL  L    
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK--- 85

Query: 210 AHIALNTNFLQIIGESM-PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFN 268
               L+ N    +       L +L               +VL L+  +    +     F 
Sbjct: 86  ----LDYNQFLQLETGAFNGLANL---------------EVLTLTQCNLDGAVLSGNFFK 126

Query: 269 H-SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLD 327
             + L++    +N                  +K +          F     + +   +LD
Sbjct: 127 PLTSLEMLVLRDN-----------------NIKKIQP-----ASFF----LNMRRFHVLD 160

Query: 328 VSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEE 387
           ++ N  +  I  E                                    L+++    + E
Sbjct: 161 LTFNKVK-SICEEDLLNFQGKH----------------------FTLLRLSSITLQDMNE 197

Query: 388 NHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC 447
                E   +  K   +  L L+ N     + +   +      I                
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS-----------LIL 246

Query: 448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC-GLN 506
              +         N        F  L        SG+    L+ + +   +   +     
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLE------ASGVKTCDLSKSKIF-ALLKSVFSHFT 299

Query: 507 QLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562
            L+ L L+ N ++ +    F+       L+ S N   S+D     S  F N         
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-----SRMFEN--------- 345

Query: 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTG 621
                              L  L  +DLS N  I  +       L  ++ L L  N L  
Sbjct: 346 -------------------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK- 384

Query: 622 TIPS-TFSKLEAYRNLDLSYN 641
           ++P   F +L + + + L  N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 64/411 (15%), Positives = 128/411 (31%), Gaps = 76/411 (18%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILS-- 144
           +    F     L  L L  N            +     L NL++  L+  + + ++LS  
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123

Query: 145 SLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH 204
               L+S+  L L  N ++       F +     VLD+  N++ ++   +      + + 
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI--CEED--LLNFQG 179

Query: 205 LDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPD 264
                                      L LS+            +  ++          +
Sbjct: 180 K----------------------HFTLLRLSS----------ITLQDMNEYWLGWEKCGN 207

Query: 265 PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLR 324
           P F ++ +       N     + +         +++SL LS+            S     
Sbjct: 208 P-FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN------SYNMGSSFGHTN 260

Query: 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384
             D  N  F+G            +   ++S + +      +    +FS   + T++  L 
Sbjct: 261 FKDPDNFTFKGLEA-------SGVKTCDLSKSKI-----FALLKSVFS---HFTDLEQLT 305

Query: 385 LEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPV 444
           L +N        +      L  L L+ N L     +   NL  L+ + +  NH+   +  
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGD 364

Query: 445 E-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
           + F  L  L+ L +  N +  S+P           + L+ L  + L  N  
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGI-------FDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 62/339 (18%), Positives = 107/339 (31%), Gaps = 57/339 (16%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L L+      L+   L+   F P   LE L L  NNI   ++           +    +
Sbjct: 107 VLTLTQCN---LDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFL----NMRRFHV 158

Query: 131 FDLSGN---SFNNSILSSLTRLSSVRSLKLSYNRLE-------GSIDVKEFDSFNNLEVL 180
            DL+ N   S     L +         L+LS   L+       G           ++  L
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240
           D+  N      + + F    +   +        L  +    +G S          NF+  
Sbjct: 218 DLSGNGFKES-MAKRFFDAIAGTKIQS------LILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 241 NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF--- 297
               +  +   LS +     +      + + L+      NEI       + +    F   
Sbjct: 271 GLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEI-------NKIDDNAFWGL 322

Query: 298 -QLKSLSLSS----GYGDGPFR-LPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCF 351
             L  L+LS           F  L       L +LD+S N+ +  +  +    LP+L   
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLD-----KLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376

Query: 352 NISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHF 390
            +  N L  S+P       F     LT+++ + L  N +
Sbjct: 377 ALDTNQLK-SVPDGI----FD---RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 50/257 (19%), Positives = 81/257 (31%), Gaps = 39/257 (15%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 465
           + L+ N+++         L  LQ + + +      I    F  L  L IL +  N     
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 466 LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV--PVQLCGLNQLQLLDLSDNNLHGLIP 523
           L +          NGL+ L  L L   NL+G V        L  L++L L DNN+  + P
Sbjct: 94  LET-------GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 524 -PFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ 578
             FF N      L  ++N   S+                      E        +    +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSI--------------------CEEDLLNFQGKHFTLLR 186

Query: 579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638
              ++L    D++   L           T I  L+LS N    ++   F    A   +  
Sbjct: 187 LSSITLQ---DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 639 SYNKLNGKIPRQLVELN 655
                +  +       N
Sbjct: 244 LILSNSYNMGSSFGHTN 260

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 6e-22
 Identities = 60/422 (14%), Positives = 145/422 (34%), Gaps = 71/422 (16%)

Query: 122 VTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLD 181
             +L  L   D   +S  +  ++ + +L+ +  L  + N +  ++D+       NL  L 
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLDLS---QNTNLTYLA 91

Query: 182 MKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES-MPSLKHLSLSNFSPS 240
              N++ NL           L +L+          N L  +  S  P L +L+ +  + +
Sbjct: 92  CDSNKLTNLD----VTPLTKLTYLNCDT-------NKLTKLDVSQNPLLTYLNCARNTLT 140

Query: 241 NDSWTLN---QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHA-EITESHSLTAPT 296
               + N     L    N     I+   +   ++L       N+I   +++++  L    
Sbjct: 141 EIDVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLN--R 195

Query: 297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN 356
               + +++         L ++ +  L  LD S+N       +++   L  L+ F+ S+N
Sbjct: 196 LNCDTNNITK--------LDLNQNIQLTFLDCSSNKLTE---IDVTP-LTQLTYFDCSVN 243

Query: 357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG 416
            L   +  S           L+ +  L   +   + EI   L+    L            
Sbjct: 244 PLT-ELDVS----------TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIK 289

Query: 417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE 476
           ++   + + T L  +      +     ++  Q   L  L +++  ++  L          
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--------- 334

Query: 477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN 536
            ++  + L  L   + +++ +    +  +  L     ++     +      N +L  + +
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 537 NN 538
            +
Sbjct: 392 PD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 64/399 (16%), Positives = 110/399 (27%), Gaps = 89/399 (22%)

Query: 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS 305
               +  +                + L     +N+ I  ++T    LT     L  L  +
Sbjct: 20  FASEVAAAFEM--QATDTISEEQLATLTSLDCHNSSI-TDMTGIEKLT----GLTKLICT 72

Query: 306 SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS 365
           S        L +  + +L  L   +N     + V     L  L+  N   N L   +  S
Sbjct: 73  SNNITT---LDLSQNTNLTYLACDSNKLTN-LDV---TPLTKLTYLNCDTNKLT-KLDVS 124

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL 425
                         + +L    N    EI   +S    L  L  + N    K+   +   
Sbjct: 125 ----------QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLS 485
           T L  +    N +     ++  Q   L  L+   NNI+  L           +N    L+
Sbjct: 170 TQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD----------LNQNIQLT 215

Query: 486 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKP 544
            L  + N L     + +  L QL   D S N L  L        T LH    +   +D  
Sbjct: 216 FLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID-- 270

Query: 545 FEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG 604
                                               +      I              + 
Sbjct: 271 ------------------------------------LTHNTQLIYFQAEGCRKIKELDVT 294

Query: 605 NLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           + T++ +L+     +T  +    S+      L L+  +L
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 54/389 (13%), Positives = 112/389 (28%), Gaps = 79/389 (20%)

Query: 280 NEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPV 339
           N + A  T+S +   P     S   ++        +      +L  LD  N++      +
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGI 60

Query: 340 EIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS 399
           E    L  L+    + N +  ++  S            TN+ +L  + N     +   ++
Sbjct: 61  E---KLTGLTKLICTSNNIT-TLDLS----------QNTNLTYLACDSNKLT-NLD--VT 103

Query: 400 KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD 459
               L  L  + N L+ K+   +     L ++   +N L     ++      L  LD   
Sbjct: 104 PLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHL 157

Query: 460 NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
           N     L           +   + L+ L  + N +     + +     L  L+   NN+ 
Sbjct: 158 NKKITKLD----------VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT 204

Query: 520 GLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG 579
            L      N  L     +++ L        D                             
Sbjct: 205 KL--DLNQNIQLTFLDCSSNKLT-----EIDVTP-------------------------- 231

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             L+ L+  D S N L       +  L+++  L+    +L   I    +           
Sbjct: 232 --LTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAE 283

Query: 640 YNKLNGKIPRQLVELNAFVVFSFACNNLS 668
             +   ++   +       +       ++
Sbjct: 284 GCRKIKELD--VTHNTQLYLLDCQAAGIT 310

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 87/530 (16%), Positives = 162/530 (30%), Gaps = 99/530 (18%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
             K   LS NS +   +  ++ LS +R L+LS+NR+  S+D   F    +LE LD+  N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMP--SLKHLSLSNFSPSNDSW 244
           + N+          SL HLD       L+ N   ++       +L  L            
Sbjct: 112 LQNI----SCCPMASLRHLD-------LSFNDFDVLPVCKEFGNLTKL------------ 148

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
                L LS            L   + L +     +                  L S  +
Sbjct: 149 ---TFLGLSAA----KFRQLDLLPVAHLHLSCILLD------------------LVSYHI 183

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
             G            + ++  L    N+          + L  L   NI +N  +     
Sbjct: 184 KGG----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
           +F   +  +   L NV    +E                 ++ L + N  ++ +I +    
Sbjct: 240 TFLSELT-RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 425 LTGLQHIIM-----PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN 479
            +      +                 +     + I  +S ++       C          
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP--------P 350

Query: 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS 539
             S  + L    N     V      L +LQ L L  N L            +      + 
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI 599
           SL+     ++D                 +                +  ++LS N L G +
Sbjct: 411 SLNSLNSHAYDR-------------TCAWAES-------------ILVLNLSSNMLTGSV 444

Query: 600 PPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR 649
              +    ++++L+L +N +  +IP   + L+A + L+++ N+L   +P 
Sbjct: 445 FRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 81/453 (17%), Positives = 152/453 (33%), Gaps = 65/453 (14%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREV-TRLNNLKMFDLSGNSFNNSILSSL--TR 148
            +   +L  L LS N I        +    V     +L+  D+S N      L ++    
Sbjct: 72  ISFLSELRVLRLSHNRIR-------SLDFHVFLFNQDLEYLDVSHNR-----LQNISCCP 119

Query: 149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMS 208
           ++S+R L LS+N  +     KEF +   L  L +   +   L           + HL +S
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------DLLPVAHLHLS 172

Query: 209 YAHIALNTNFLQ-IIGESMPSLKHLSLSNFSPSND--------------SWTLNQVLWLS 253
              + L +  ++    ES+       L      N                  L+ +    
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 254 NNHFRIPISPDPLFNHSRLKIFHAYNNEI-HAEITESHSLTAPT----FQLKSLSLSSGY 308
            N  R+      L     L      + E       +      P       + +L+++   
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 309 GDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG 368
               F     + KSL +  V N  F       +  +   ++   +S++     I      
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLF-SKEALYSVFAEMNIKMLSISDT-PFIHMVCPP 350

Query: 369 HMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS--GKIPQWLGNLT 426
                  + ++  +L   +N F   + Q  S    L+ L L  N L    K+     N++
Sbjct: 351 -------SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 427 GLQHIIMPKNHLEGPIPVEFCQL-DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLS 485
            L+ + +  N L        C   + + +L++S N ++GS+  C              + 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL----------PPKVK 453

Query: 486 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL 518
            L L +N +   +P  +  L  LQ L+++ N L
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 32/197 (16%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 86  YLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS 145
           +    L++ F ++    LS ++      +           ++    + + N F +S+   
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTP--FIHMVCPPS----PSSFTFLNFTQNVFTDSVFQG 372

Query: 146 LTRLSSVRSLKLSYNRLEG-SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEH 204
            + L  +++L L  N L+          + ++LE LD+  N +++    +     +S+  
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

Query: 205 LDMSYAHIA---------------LNTNFLQIIGESM---PSLKHLSLSN----FSPSN- 241
           L++S   +                L+ N +  I + +    +L+ L++++      P   
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 242 -DSWTLNQVLWLSNNHF 257
            D  T  Q +WL +N +
Sbjct: 493 FDRLTSLQYIWLHDNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 61/337 (18%), Positives = 99/337 (29%), Gaps = 73/337 (21%)

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
               LLD+ NN     I       L +L    +  N +     S      F+    L  +
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI-----SKISPGAFA---PLVKL 102

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHL-E 439
             L L +N    E+P+ + K   L+ L ++ N ++         L  +  + +  N L  
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 440 GPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV 498
             I    F  +  L  + I+D NI+ ++P                L+ L L  N +    
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQ----------GLPPSLTELHLDGNKITKVD 208

Query: 499 PVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNT 554
              L GLN L  L LS N++  +      N      LH + N    +             
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--------- 259

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-------PIGNLT 607
                                         +  + L  N  I  I               
Sbjct: 260 -------------------------ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKA 293

Query: 608 RIQILNLSHNNLTGTI--PSTFSKLEAYRNLDLSYNK 642
               ++L  N +      PSTF  +     + L   K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 53/299 (17%), Positives = 93/299 (31%), Gaps = 43/299 (14%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF----QLKSLS 303
            +L L NN     I      N   L      NN+I         ++   F    +L+ L 
Sbjct: 55  ALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-------KISPGAFAPLVKLERLY 106

Query: 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP 363
           LS         LP    K+L+ L V  N     +   + + L  +    +  N L     
Sbjct: 107 LSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK---S 159

Query: 364 SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLG 423
           S  E   F     +  + ++ + + +    IPQ L     L  L+L+ N ++      L 
Sbjct: 160 SGIENGAFQ---GMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLK 213

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
            L  L  + +  N +             L+ L +++N +   +P                
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA--------DHKY 264

Query: 484 LSHLILAHNNLEG------EVPVQLCGLNQLQLLDLSDNNL-HGLIPP--FFYNTALHE 533
           +  + L +NN+          P           + L  N + +  I P  F        
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 55/344 (15%), Positives = 111/344 (32%), Gaps = 77/344 (22%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           +  + DL  N            L ++ +L L  N++   I    F     LE L + +N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSLKHLSLSNFSPSNDSWT 245
           +  L  P+     K+L+ L        ++ N +  + +S+   L  +             
Sbjct: 112 LKEL--PEKM--PKTLQELR-------VHENEITKVRKSVFNGLNQM------------- 147

Query: 246 LNQVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
              V+ L  N  +     +  F    +L      +  I                      
Sbjct: 148 --IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--------------------- 184

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
                     +P     SL  L +  N     +       L +L+   +S N++     S
Sbjct: 185 ---------TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI-----S 229

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG------KI 418
           + +    +   N  ++R L L  N  V ++P  L+    ++ +YL+NNN+S         
Sbjct: 230 AVDNGSLA---NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 419 PQWLGNLTGLQHIIMPKNHLE-GPIPVE-FCQLDWLQILDISDN 460
           P +         + +  N ++   I    F  +     + + + 
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 57/283 (20%), Positives = 93/283 (32%), Gaps = 58/283 (20%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           ++P+ L        L L NN ++        NL  L  +I+  N +    P  F  L  L
Sbjct: 45  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
           + L +S N +   LP                L  L +  N +         GLNQ+ +++
Sbjct: 103 ERLYLSKNQLK-ELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 513 LSDNNLH-GLIPP--FFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           L  N L    I    F     L     +  N +++ +                       
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----------------------- 188

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPS 625
                         +   L+ + L  NK I  +       L  +  L LS N+++     
Sbjct: 189 -------------GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 626 TFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
           + +     R L L+ NKL  K+P  L +     V     NN+S
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 51/267 (19%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L L N +   + E  +    F   + L +L L  N I+       A       L  L+ 
Sbjct: 56  LLDLQNNK---ITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAP------LVKLER 104

Query: 131 FDLSGNSFNNSILSSLTR--LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEID 188
             LS N      L  L      +++ L++  N +   +    F+  N + V+++  N + 
Sbjct: 105 LYLSKNQ-----LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 189 NLVVPQG-FPHFKSLEHLDMSYAHIA--------------LNTNFLQIIGE----SMPSL 229
           +  +  G F   K L ++ ++  +I               L+ N +  +       + +L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 230 KHLSLSNFSPSN------DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH 283
             L LS  S S        +    + L L+NN       P  L +H  +++ + +NN I 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNIS 276

Query: 284 AEITESHSLTAPTF----QLKSLSLSS 306
             I  +                +SL S
Sbjct: 277 -AIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 46/221 (20%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS--LTRLSSV 152
            + L+ L +  N I                LN + + +L  N   +S + +     +  +
Sbjct: 120 PKTLQELRVHENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 153 RSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHI 212
             ++++   +  +I         +L  L +  N+I   V         +L  L +S+  I
Sbjct: 174 SYIRIADTNIT-TIPQ---GLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSI 228

Query: 213 A-----------------LNTNFLQIIGE---SMPSLKHLSLSN----------FSPSND 242
           +                 LN N L  +         ++ + L N          F P   
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 243 SWTLN--QVLWLSNNHFRI-PISPDPLFNHSRLKIFHAYNN 280
           +        + L +N  +   I P               N 
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 47/244 (19%), Positives = 80/244 (32%), Gaps = 52/244 (21%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
           L+ +  ++  L  K+P+ L        + +  N +      +F  L  L  L + +N IS
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
              P  F          L  L  L L+ N L+ E+P ++     LQ L + +N +  +  
Sbjct: 90  KISPGAFA--------PLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRK 138

Query: 524 PFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG 579
             F        +    N   S          F+                           
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGA---FQG-------------------------- 169

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             +  LS I ++    I  IP   G    +  L+L  N +T    ++   L     L LS
Sbjct: 170 --MKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 640 YNKL 643
           +N +
Sbjct: 225 FNSI 228

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 55/270 (20%), Positives = 86/270 (31%), Gaps = 50/270 (18%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
           +N R+L L EN+       +      L+ L L  N++          L  L  + +  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 438 LEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
           L   IP   F  L  L+ L + +N I       F+         +  L  L L       
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFN--------RVPSLMRLDLGELKKLE 185

Query: 497 EVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFR 552
            +      GL  L+ L+L   N+   +P       L E   S N+   +         F 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIR-----PGSFH 239

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQI 611
                                        LS L  + +  ++ +  I       L  +  
Sbjct: 240 G----------------------------LSSLKKLWVMNSQ-VSLIERNAFDGLASLVE 270

Query: 612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
           LNL+HNNL+      F+ L     L L +N
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 52/257 (20%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           E+PQ +      + L L  NN+         +L  L+ + + +N +       F  L  L
Sbjct: 68  EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
             L++ DN ++      F          LS L  L L +N +E         +  L  LD
Sbjct: 126 NTLELFDNWLTVIPSGAFE--------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 513 LSDNN-LHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFE 567
           L +   L  +    F        L+    N   +        +                 
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-------NLTP-------------- 216

Query: 568 FTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPST 626
                         L  L  +++S N     I P     L+ ++ L + ++ ++    + 
Sbjct: 217 --------------LVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 627 FSKLEAYRNLDLSYNKL 643
           F  L +   L+L++N L
Sbjct: 262 FDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 61/273 (22%), Positives = 94/273 (34%), Gaps = 48/273 (17%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
           + L L  N+ ++ I  D   +   L++     N I         +    F          
Sbjct: 78  RYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIR-------QIEVGAFN--------- 120

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                  L      SL  L++ +N     IP    + L  L    +  N +      S  
Sbjct: 121 ------GLA-----SLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-----ESIP 163

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIP-QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT 426
            + F+    + ++  L L E   +  I   +    F LK L L   N+   +P  L  L 
Sbjct: 164 SYAFN---RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLV 218

Query: 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSH 486
           GL+ + M  NH     P  F  L  L+ L + ++ +S    + F         GL+ L  
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GLASLVE 270

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
           L LAHNNL          L  L  L L  N  +
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 51/292 (17%), Positives = 99/292 (33%), Gaps = 51/292 (17%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
           +      LS ++PQ +   +  +++ + +N+++      F  L  L++L +  N+I    
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFF 526
              F+        GL+ L+ L L  N L          L++L+ L L +N +  +    F
Sbjct: 116 VGAFN--------GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 527 YN-TALHE----SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRV 581
               +L             +         F                              
Sbjct: 168 NRVPSLMRLDLGELKKLEYIS-----EGAFEG---------------------------- 194

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
           L  L  ++L    +     P +  L  ++ L +S N+     P +F  L + + L +  +
Sbjct: 195 LFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
           +++         L + V  + A NNLS    +L        E     NP+ C
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 20/207 (9%)

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
             L +L +  N+ +  I V   + L SL+   +  N L     +      F     L+ +
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL-----TVIPSGAFE---YLSKL 149

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLE 439
           R L L  N        + ++   L  L L        I       L  L+++ +   +++
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499
             +P     L  L+ L++S N+     P  FH        GLS L  L + ++ +     
Sbjct: 210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH--------GLSSLKKLWVMNSQVSLIER 259

Query: 500 VQLCGLNQLQLLDLSDNNLHGLIPPFF 526
               GL  L  L+L+ NNL  L    F
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLF 286

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 47/254 (18%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           N +  +L  N+       +   L  +  L+L  N +   I+V  F+   +L  L++  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES----MPSLKHLSLSNF----S 238
           +  +     F +   L  L +         N ++ I       +PSL  L L        
Sbjct: 135 LTVI-PSGAFEYLSKLRELWLRN-------NPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 239 PSNDSWT-LN--QVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTA 294
            S  ++  L   + L L   +    I   P       L+      N           +  
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSGNHF-------PEIRP 235

Query: 295 PTF----QLKSLSLS----SGYGDGPFR-LPIHSHKSLRLLDVSNNNFQGCIPVEIGDIL 345
            +F     LK L +     S      F  L      SL  L++++NN    +P ++   L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-----SLVELNLAHNNLSS-LPHDLFTPL 289

Query: 346 PSLSCFNISMNALD 359
             L   ++  N  +
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 62/321 (19%), Positives = 99/321 (30%), Gaps = 92/321 (28%)

Query: 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLS 233
            +N   L++  N I  +     F H   LE L +    I       QI   +   L  L 
Sbjct: 74  PSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASL- 125

Query: 234 LSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
                           L L +N   + I        S+L+     NN I        S+ 
Sbjct: 126 --------------NTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-------ESIP 163

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
           +  F                R+P     SL  LD+                   L    I
Sbjct: 164 SYAFN---------------RVP-----SLMRLDLGELK--------------KLE--YI 187

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S  A +G                L N+++L L   +   ++P +L+    L+ L ++ N+
Sbjct: 188 SEGAFEG----------------LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNH 229

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
                P     L+ L+ + +  + +       F  L  L  L+++ NN+S      F   
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT-- 287

Query: 474 SIEQINGLSGLSHLILAHNNL 494
                  L  L  L L HN  
Sbjct: 288 ------PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 42/228 (18%), Positives = 70/228 (30%), Gaps = 48/228 (21%)

Query: 86  YLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTR-----LNNLKMFDLSGNSFNN 140
            +    F     L +L L  N +             +       L+ L+   L  N   +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWL-----------TVIPSGAFEYLSKLRELWLRNNPIES 161

Query: 141 SILSSLTRLSSVRSLKLS-YNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHF 199
               +  R+ S+  L L    +LE  I    F+   NL+ L++    I ++         
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPL 217

Query: 200 KSLEHLDMSYAHIALNTNFLQIIGESMPS-LKHLSLSNFSPSNDSWTLNQVLWLSNNHFR 258
             LE L+MS        N    I       L  L               + LW+ N+   
Sbjct: 218 VGLEELEMSG-------NHFPEIRPGSFHGLSSL---------------KKLWVMNSQVS 255

Query: 259 IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306
           + I  +     + L   +  +N +    +  H L  P   L  L L  
Sbjct: 256 L-IERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHH 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 7e-18
 Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 52/257 (20%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           E+P  +S     + L L+ N +         +L  L+ + + +NH+       F  L  L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
             L++ DN ++      F          LS L  L L +N +E         +  L+ LD
Sbjct: 115 NTLELFDNRLTTIPNGAFV--------YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166

Query: 513 LSDNNLHGLIPP-FFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFE 567
           L +      I    F        L+ +  N   +        +                 
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-------NLTP-------------- 205

Query: 568 FTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPST 626
                         L  L  +DLS N  +  I P     L  +Q L +  + +     + 
Sbjct: 206 --------------LIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 627 FSKLEAYRNLDLSYNKL 643
           F  L++   ++L++N L
Sbjct: 251 FDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 58/273 (21%), Positives = 92/273 (33%), Gaps = 48/273 (17%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
           ++L L  N  +I I  +   +   L+I     N I        ++    F          
Sbjct: 67  RLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIR-------TIEIGAF---------- 108

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                     +   +L  L++ +N     IP      L  L    +  N +      S  
Sbjct: 109 ----------NGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPI-----ESIP 152

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIP-QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT 426
            + F+    + ++R L L E   +  I   +      L+ L L   NL  +IP  L  L 
Sbjct: 153 SYAFN---RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI 207

Query: 427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSH 486
            L  + +  NHL    P  F  L  LQ L +  + I     + F          L  L  
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------NLQSLVE 259

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
           + LAHNNL          L+ L+ + L  N  +
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 57/292 (19%), Positives = 101/292 (34%), Gaps = 51/292 (17%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
           +     NL  ++P  +   T  + + + +N ++      F  L  L+IL +S N+I    
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFF 526
              F+        GL+ L+ L L  N L          L++L+ L L +N +  +    F
Sbjct: 105 IGAFN--------GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 527 YN-TALHE----SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRV 581
               +L           S +         F                              
Sbjct: 157 NRIPSLRRLDLGELKRLSYIS-----EGAFEG---------------------------- 183

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
           LS L  ++L+   L   IP  +  L ++  L+LS N+L+   P +F  L   + L +  +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
           ++          L + V  + A NNL+    +L              NP+ C
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 20/210 (9%)

Query: 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNL 377
              + L +L +S N+ +  I +   + L +L+   +  N L     ++     F     L
Sbjct: 85  KHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRL-----TTIPNGAFV---YL 135

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKN 436
           + ++ L L  N        + ++   L+ L L        I       L+ L+++ +   
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
           +L   IP     L  L  LD+S N++S   P  F         GL  L  L +  + ++ 
Sbjct: 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQ--------GLMHLQKLWMIQSQIQV 245

Query: 497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFF 526
                   L  L  ++L+ NNL  L    F
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           +L ++  L L  NH       + +    L  L L +N L+         L+ L+ + +  
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 436 NHLEGPIPVE-FCQLDWLQILDISDNNISGSLPS-CFH--------------LLSIEQIN 479
           N +E  IP   F ++  L+ LD+ +      +    F               L  I  + 
Sbjct: 146 NPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204

Query: 480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESY 535
            L  L  L L+ N+L    P    GL  LQ L +  + +  +    F N      ++ ++
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 536 NNNSSL 541
           NN + L
Sbjct: 265 NNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 53/257 (20%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           N ++ +L  N      ++S   L  +  L+LS N +  +I++  F+   NL  L++  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES----MPSLKHLSLSNFSPSND 242
           +  +     F +   L+ L +         N ++ I       +PSL+ L L        
Sbjct: 124 LTTI-PNGAFVYLSKLKELWLRN-------NPIESIPSYAFNRIPSLRRLDLGEL---KR 172

Query: 243 SWTLN----------QVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHS 291
              ++          + L L+  +    +   P      +L       N +        +
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHL-------SA 221

Query: 292 LTAPTF----QLKSLSLSSGY----GDGPFR-LPIHSHKSLRLLDVSNNNFQGCIPVEIG 342
           +   +F     L+ L +            F  L      SL  +++++NN    +P ++ 
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-----SLVEINLAHNNLTL-LPHDLF 275

Query: 343 DILPSLSCFNISMNALD 359
             L  L   ++  N  +
Sbjct: 276 TPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 72/321 (22%), Positives = 109/321 (33%), Gaps = 92/321 (28%)

Query: 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLS 233
             N  +L++  N+I  +     F H + LE L +S  HI        I   +   L +L 
Sbjct: 63  STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANL- 114

Query: 234 LSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
                           L L +N     I        S+LK     NN I        S+ 
Sbjct: 115 --------------NTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPI-------ESIP 152

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
           +  F                R+P     SLR LD+                   LS   I
Sbjct: 153 SYAFN---------------RIP-----SLRRLDLGELK--------------RLS--YI 176

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S  A +G                L+N+R+L L   +   EIP +L+    L  L L+ N+
Sbjct: 177 SEGAFEG----------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH 218

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL 473
           LS   P     L  LQ + M ++ ++      F  L  L  ++++ NN++  LP      
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH----- 272

Query: 474 SIEQINGLSGLSHLILAHNNL 494
             +    L  L  + L HN  
Sbjct: 273 --DLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 37/213 (17%)

Query: 86  YLNAYLFTPFQQLESLSLSANNI----AGCVENEGASSREVTRLNNLKMFDLSGNSFNNS 141
            +    F     L +L L  N +     G              L+ LK   L  N   + 
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY----------LSKLKELWLRNNPIESI 151

Query: 142 ILSSLTRLSSVRSLKLS-YNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFK 200
              +  R+ S+R L L    RL   I    F+  +NL  L++    +  +          
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLI 207

Query: 201 SLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN----FSPSNDSWTLN--QVL 250
            L+ LD+S        N L  I       +  L+ L +          N    L     +
Sbjct: 208 KLDELDLSG-------NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 251 WLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH 283
            L++N+  + +  D       L+  H ++N  +
Sbjct: 261 NLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN 292

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 56/259 (21%), Positives = 88/259 (33%), Gaps = 52/259 (20%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVEFCQLD 450
            +P  +        L L +N L          LT L  + +  N L   G          
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL-CGLNQLQ 509
            L+ LD+S N +  ++ S F         GL  L HL   H+NL+      +   L  L 
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFL--------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 510 LLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEI 565
            LD+S  +        F        L  + N+      P                   +I
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-------------------DI 170

Query: 566 FEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIP 624
           F               L  L+ +DLS  + +  + P    +L+ +Q+LN+SHNN      
Sbjct: 171 FTE-------------LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 625 STFSKLEAYRNLDLSYNKL 643
             +  L + + LD S N +
Sbjct: 217 FPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 322 SLRLLDVSNNNFQGC-IPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
            L  L +S+N         +      SL   ++S N +  ++ S+F G        L  +
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLG--------LEQL 103

Query: 381 RWLLLEENHFVGEIPQSL-SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN-HL 438
             L  + ++       S+      L  L +++ +           L+ L+ + M  N   
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 439 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV 498
           E  +P  F +L  L  LD+S   +    P+ F+         LS L  L ++HNN     
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--------SLSSLQVLNMSHNNFFSLD 215

Query: 499 PVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528
                 LN LQ+LD S N++         +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 52/277 (18%), Positives = 91/277 (32%), Gaps = 53/277 (19%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK--IPQWLGNLTGLQHIIMPK 435
           ++   L LE N           K   L  L L++N LS K    Q     T L+++ +  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N +   +   F  L+ L+ LD   +N+         +        L  L +L ++H +  
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 496 GEVPVQ-LCGLNQLQLLDLSDNNLHGLIPP-FFYN----TALHESYNNNSSLDKPFEISF 549
                    GL+ L++L ++ N+      P  F      T L  S      L        
Sbjct: 140 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-----PT 193

Query: 550 DFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTR 608
            F +                            LS L  +++S N     +   P   L  
Sbjct: 194 AFNS----------------------------LSSLQVLNMSHNN-FFSLDTFPYKCLNS 224

Query: 609 IQILNLSHNNLTGTIPSTFSKLEAY-RNLDLSYNKLN 644
           +Q+L+ S N++  +         +    L+L+ N   
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 40/253 (15%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLE-GSIDVKEFDSFNNLEVLDMKRN 185
           +    +L  N   +       +L+ +  L LS N L       +      +L+ LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 186 EIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE-----SMPSLKHLSLSN---- 236
            +  +     F   + LEHLD          + L+ + E     S+ +L +L +S+    
Sbjct: 89  GVITM--SSNFLGLEQLEHLD-------FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 237 FSPSNDSWTLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTA 294
            + +     L+  +VL ++ N F+    PD       L        ++         L+ 
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------EQLSP 192

Query: 295 PTFQ----LKSLSLS----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILP 346
             F     L+ L++S          P++       SL++LD S N+       E+     
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYK----CLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 347 SLSCFNISMNALD 359
           SL+  N++ N   
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 55/244 (22%), Positives = 89/244 (36%), Gaps = 28/244 (11%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
           L L + +   L        +F    QL  LSLS+N +      +G  S+      +LK  
Sbjct: 33  LELESNKLQSLP-----HGVFDKLTQLTKLSLSSNGL----SFKGCCSQSDFGTTSLKYL 83

Query: 132 DLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV 191
           DLS N    ++ S+   L  +  L   ++ L+   +   F S  NL  LD+         
Sbjct: 84  DLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA- 141

Query: 192 VPQG-FPHFKSLEHLDMSYAHI--ALNTNFLQIIGESMPSLKHLSLSN----FSPSNDSW 244
              G F    SLE L M+          +        + +L  L LS             
Sbjct: 142 -FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT----ELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 245 TLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL 302
           +L+  QVL +S+N+F   +   P    + L++     N I    ++   L      L  L
Sbjct: 197 SLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFL 253

Query: 303 SLSS 306
           +L+ 
Sbjct: 254 NLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 53/250 (21%), Positives = 88/250 (35%), Gaps = 23/250 (9%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
             L L +N  +  +        ++L      +N +  +   S S    T  LK L LS  
Sbjct: 31  TRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSF- 87

Query: 308 YGDGPFRLP--IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS 365
             +G   +       + L  LD  ++N +      +   L +L   +IS      +    
Sbjct: 88  --NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEI-PQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
           F G        L+++  L +  N F     P   ++   L  L L+   L    P    +
Sbjct: 146 FNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484
           L+ LQ + M  N+        +  L+ LQ+LD S N+I  S                S L
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-------PSSL 250

Query: 485 SHLILAHNNL 494
           + L L  N+ 
Sbjct: 251 AFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 52/259 (20%), Positives = 86/259 (33%), Gaps = 41/259 (15%)

Query: 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE--GEVPVQLCGLNQL 508
               L++  N +       F          L+ L+ L L+ N L   G       G   L
Sbjct: 29  SATRLELESNKLQSLPHGVFD--------KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 509 QLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK---------KVE 559
           + LDLS N +  +   F     L      +S+L +  E S  F +               
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTR 139

Query: 560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNN 618
              + IF               LS L  + ++ N    +  P I   L  +  L+LS   
Sbjct: 140 VAFNGIFNG-------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 619 LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQF 678
           L    P+ F+ L + + L++S+N            LN+  V  ++ N++     +     
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE--L 243

Query: 679 ATFNES----SYKGNPFLC 693
             F  S    +   N F C
Sbjct: 244 QHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 31/224 (13%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
           L LS+     L      +        L+ L LS N +          S     L  L+  
Sbjct: 57  LSLSSNG---LSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSNFLGLEQLEHL 106

Query: 132 DLSGNSFNN-SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
           D   ++    S  S    L ++  L +S+           F+  ++LEVL M  N     
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN----FSPSND 242
            +P  F   ++L  LD+S          L+ +      S+ SL+ L++S+       +  
Sbjct: 166 FLPDIFTELRNLTFLDLSQ-------CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 243 SWTLN--QVLWLSNNHFRIPISPDPLFN-HSRLKIFHAYNNEIH 283
              LN  QVL  S NH         L +  S L   +   N+  
Sbjct: 219 YKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 29/175 (16%), Positives = 49/175 (28%), Gaps = 43/175 (24%)

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH--GLIPPFFYN----TALHESY 535
           S  + L L  N L+         L QL  L LS N L   G      +       L  S+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL 595
           N   ++        +F                              L  L  +D   +  
Sbjct: 88  NGVITMSS------NFLG----------------------------LEQLEHLDFQHSN- 112

Query: 596 IGHIPPP--IGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648
           +  +       +L  +  L++SH +        F+ L +   L ++ N       
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 64/319 (20%), Positives = 101/319 (31%), Gaps = 63/319 (19%)

Query: 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNL 377
              +SL  L    +        +  DI+ SLS   +++ A        F      +   +
Sbjct: 40  GGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFG---ALRVLGI 94

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFL--LKGLYLNNNNLSGKIPQWLGNL-----TGLQH 430
           + ++ L LE     G  P  L +     L  L L N + +     WL  L      GL+ 
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKV 153

Query: 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILA 490
           + + + H       +      L  LD+SDN   G       L+S         L  L L 
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----LISALCPLKFPTLQVLALR 209

Query: 491 HNNLE---GEVPVQLCGLNQLQLLDLSDNNLHGLIPP--FFYNTALHE---SYNNNSSLD 542
           +  +E   G          QLQ LDLS N+L          + + L+    S+     + 
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 543 KPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP 602
           K                                     + + LS +DLS N+L     P 
Sbjct: 270 KG------------------------------------LPAKLSVLDLSYNRL--DRNPS 291

Query: 603 IGNLTRIQILNLSHNNLTG 621
              L ++  L+L  N    
Sbjct: 292 PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 6e-17
 Identities = 54/290 (18%), Positives = 86/290 (29%), Gaps = 53/290 (18%)

Query: 383 LLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW---LGNLTGLQHIIMPKNHLE 439
           L   +          + K   LK L +    +  +I      +  ++GLQ + +    + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499
           G  P    +     +  ++  N+S +    +  L+  Q     GL  L +A  +      
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAW--LAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 500 VQLCGLNQLQLLDLSDNNLHGLIPPFFYN--------TALHESYNNNSSLDKPFEISFDF 551
            Q+     L  LDLSDN   G                  L        +           
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-- 224

Query: 552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQ 610
                                            L G+DLS N L      P     +++ 
Sbjct: 225 ----------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 611 ILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR-----QLVELN 655
            LNLS   L        +KL     LDLSYN+L+   P      Q+  L+
Sbjct: 257 SLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDR-NPSPDELPQVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 51/285 (17%), Positives = 84/285 (29%), Gaps = 36/285 (12%)

Query: 250 LWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS--SG 307
           L    +          +     LK        I + I            L+ L+L     
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIP 363
            G  P  L   +   L +L++ N ++       + ++     P L   +I+      +  
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSL-NFS 165

Query: 364 SSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL----LKGLYLNNNN---LSG 416
                           +  L L +N  +GE     + C L    L+ L L N      SG
Sbjct: 166 CEQVRV-------FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQ-LDWLQILDISDNNISGSLPSCFHLLSI 475
                      LQ + +  N L        C     L  L++S   +   +P        
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL----- 272

Query: 476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520
                 + LS L L++N L+   P     L Q+  L L  N    
Sbjct: 273 -----PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVE-NEGASSREVTRLNNLKM 130
           L ++   S+       +      F  L +L LS N   G           +   L  L +
Sbjct: 154 LSIAQAHSLNF-----SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
            +    + +    +       ++ L LS+N L  +      D  + L  L++    +   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ- 267

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQII--GESMPSLKHLSLSN 236
            VP+G P    L  LD+SY       N L      + +P + +LSL  
Sbjct: 268 -VPKGLPA--KLSVLDLSY-------NRLDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 46/301 (15%), Positives = 88/301 (29%), Gaps = 41/301 (13%)

Query: 125 LNNLKMFDLSGN-SFNNSILSSLTRLSSVRSLKLSYNRL--EGSIDVKEFDSFNNLEVLD 181
             +L+      +   +    + + +  S++ L +   R+              + L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 182 MKRNEIDNLVVPQGFP-HFKSLEHLDMSYAHIALNTNFL-QIIGESMPSLKHLSLSNFSP 239
           ++  E+     P         L  L++     A    +L ++     P LK LS++    
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ--- 158

Query: 240 SNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF-Q 298
                           H     S + +     L      +N    E     +L    F  
Sbjct: 159 ---------------AHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 299 LKSLSLSS---GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
           L+ L+L +       G       +   L+ LD+S+N+ +        D    L+  N+S 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS 415
             L   +P                +  L L  N      P    +   +  L L  N   
Sbjct: 263 TGLK-QVPKGL----------PAKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFL 309

Query: 416 G 416
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 41/244 (16%), Positives = 70/244 (28%), Gaps = 34/244 (13%)

Query: 412 NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 471
           N L     +  G    L++++   +             D ++ L +    +  +      
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADL----GQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 472 LLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL 531
           L    ++ G+SGL  L L +  + G  P  L       L  L+  N+       +     
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLS 591
                    L                               N    Q RV   LS +DLS
Sbjct: 145 QWLKPGLKVLS-----------------------IAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 592 CNKLIGHIPPPI----GNLTRIQILNLSHNNLT---GTIPSTFSKLEAYRNLDLSYNKLN 644
            N  +G               +Q+L L +  +    G   +  +     + LDLS+N L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 645 GKIP 648
               
Sbjct: 242 DAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 53/307 (17%), Positives = 92/307 (29%), Gaps = 32/307 (10%)

Query: 164 GSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIG 223
           G+ DV+ +    +LE L  + +   +L          SL+ L +  A I     F  +  
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 224 ESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIH 283
             +  L+ L+L N                          P        L I +  N    
Sbjct: 92  LGISGLQELTLEN-----------------LEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 284 AEITESHSLTAPTFQ-LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVE-- 340
                   L       LK LS++  +        +    +L  LD+S+N   G   +   
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 341 -IGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP-QSL 398
                 P+L    +    +      +  G   +       ++ L L  N         S 
Sbjct: 195 LCPLKFPTLQVLALRNAGM-----ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS 458
                L  L L+   L  ++P+ L     L  + +  N L+   P    +L  +  L + 
Sbjct: 250 DWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLK 304

Query: 459 DNNISGS 465
            N    S
Sbjct: 305 GNPFLDS 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 49/275 (17%), Positives = 100/275 (36%), Gaps = 20/275 (7%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
             V+ L L  N         L +C  L+ L L +N ++        +L  L+H+ +  N+
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 438 LEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
           L   +    F  L  L  L++  N           L      + L+ L  L + + +   
Sbjct: 112 LSN-LSSSWFKPLSSLTFLNLLGNPYK-------TLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 497 EVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDF 551
           ++  +   GL  L+ L++  ++L    P    +    + L      +  L    EI  D 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDV 220

Query: 552 RNTEKKVEKKSHEI--FEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI 609
            ++ + +E +  ++  F F+  S   T           + ++   L   +   +  ++ +
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
             L  S N L       F +L + + + L  N  +
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 62/359 (17%), Positives = 110/359 (30%), Gaps = 66/359 (18%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRL-----NNLKMFDLSGNSFNNS 141
           + +          SLS   N I         SS  +  +       +K  DLS N     
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKG------SSGSLNSIPSGLTEAVKSLDLSNNRITYI 67

Query: 142 ILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFK 200
             S L R  ++++L L+ N +  +I+   F S  +LE LD+  N + NL      F    
Sbjct: 68  SNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL--SSSWFKPLS 124

Query: 201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIP 260
           SL  L+       L  N  + +GE+        L               L + N      
Sbjct: 125 SLTFLN-------LLGNPYKTLGETSLFSHLTKLQI-------------LRVGNMDTFTK 164

Query: 261 ISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSH 320
           I        + L+      +++        S    + +                +     
Sbjct: 165 IQRKDFAGLTFLEELEIDASDL-------QSYEPKSLK---------------SIQ---- 198

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
            ++  L +        +     D+  S+ C  +    LD    S       +        
Sbjct: 199 -NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW-LGNLTGLQHIIMPKNHL 438
           R + + +     ++ + L++   L  L  + N L   +P      LT LQ I +  N  
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 13/219 (5%)

Query: 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNL 377
               +L+ L +++N     I  +    L SL   ++S N L  ++ SS     F     L
Sbjct: 73  QRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL-SNLSSS----WFK---PL 123

Query: 378 TNVRWLLLEENHFVGEIPQS--LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMP 434
           +++ +L L  N +   + ++   S    L+ L + N +   KI  +    LT L+ + + 
Sbjct: 124 SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 435 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
            + L+   P     +  +  L +        L     + S  +   L          + L
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 495 EGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE 533
                  L      + + ++D +L  ++      + L E
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 38/255 (14%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN-SILSS 145
           +    F+    LE L LS N ++        SS     L++L   +L GN +      S 
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL------SSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL 205
            + L+ ++ L++        I  K+F     LE L++  +++ +   P+     +++ HL
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHL 203

Query: 206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRI--PISP 263
            +           L+I  +   S++ L L +               L   HF        
Sbjct: 204 ILHMKQH---ILLLEIFVDVTSSVECLELRD-------------TDLDTFHFSELSTGET 247

Query: 264 DPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS----GYGDGPFRLPIHS 319
           + L      +     +  +   +   + ++     L  L  S        DG F      
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSRNQLKSVPDGIF----DR 299

Query: 320 HKSLRLLDVSNNNFQ 334
             SL+ + +  N + 
Sbjct: 300 LTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 23/206 (11%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL-CGLNQLQL 510
           ++ LD+S+N I+    S               L  L+L  N +   +       L  L+ 
Sbjct: 54  VKSLDLSNNRITYISNSDLQ--------RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH 104

Query: 511 LDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           LDLS N L  L   +F      T L+   N   +L    E S  F +  K    +   + 
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL---GETSL-FSHLTKLQILRVGNMD 160

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPS 625
            FT       + G  L+ L  +++  +  +    P    ++  +  L L        +  
Sbjct: 161 TFTKIQRK-DFAG--LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 626 TFSKLEAYRNLDLSYNKLNGKIPRQL 651
                 +   L+L    L+     +L
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSEL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 9e-17
 Identities = 57/334 (17%), Positives = 100/334 (29%), Gaps = 69/334 (20%)

Query: 312 PFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMF 371
              LPI+++ SL      N         +            +     + ++    E    
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISG--TYADYFSAWDKWEKQALPGENRNEAVSLLKEC--- 56

Query: 372 SKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
                +     L L   +    +P +L     +  L +  N L   +P+   +L  L   
Sbjct: 57  ----LINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLD-- 106

Query: 432 IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
               N L   +P     L   + LD+ +N ++  LP              + L ++   +
Sbjct: 107 -ACDNRLST-LPELPASL---KHLDVDNNQLT-MLPEL-----------PALLEYINADN 149

Query: 492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFD 550
           N L   +P        L++L + +N L  L P    +  AL  S N   SL  P     +
Sbjct: 150 NQLT-MLPELPT---SLEVLSVRNNQLTFL-PELPESLEALDVSTNLLESL--PAVPVRN 202

Query: 551 FRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQ 610
             + E                                     N+ I HIP  I +L    
Sbjct: 203 HHSEE----------------------------TEIFFRCRENR-ITHIPENILSLDPTC 233

Query: 611 ILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
            + L  N L+  I  + S+  A  +        +
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 64/320 (20%), Positives = 105/320 (32%), Gaps = 75/320 (23%)

Query: 344 ILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL 403
           +LP  + F++S N+   +I  ++    FS           L  EN    E    L +C +
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYAD-YFSAWDKWEKQA--LPGENR--NEAVSLLKECLI 58

Query: 404 --LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN 461
                L LN  NLS  +P  L     +  + + +N L   +P     L   + LD  DN 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNR 111

Query: 462 ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521
           +S +LP              + L HL + +N L   +P        L+ ++  +N L  L
Sbjct: 112 LS-TLPE-----------LPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLTML 155

Query: 522 IPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
            P    +   L    N  + L +                                     
Sbjct: 156 -PELPTSLEVLSVRNNQLTFLPE------------------------------------- 177

Query: 581 VLSLLSGIDLSCNKLIGHIPPPIGNLTRIQ----ILNLSHNNLTGTIPSTFSKLEAYRNL 636
           +   L  +D+S N L   +P         +          N +T  IP     L+    +
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 637 DLSYNKLNGKIPRQLVELNA 656
            L  N L+ +I   L +  A
Sbjct: 236 ILEDNPLSSRIRESLSQQTA 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 41/283 (14%)

Query: 268 NHSRLKIFHAYNN--EIHAEITESHSLTAPTFQLKSLSLSSGYGD-GPFRLPIHSHKSLR 324
           N+  L     YN     +A+   +        + +  +L     +     L         
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWD------KWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG----HMFSKNFN---- 376
            L ++  N    +P  +    P ++   I+ NAL  S+P                +    
Sbjct: 63  ELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPE 117

Query: 377 -LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
              +++ L ++ N     +P+  +    L+ +  +NN L+  +P+   +L  L    +  
Sbjct: 118 LPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEVL---SVRN 169

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N L   +P      + L+ LD+S N +  SLP+          +            N + 
Sbjct: 170 NQLTF-LPE---LPESLEALDVSTNLLE-SLPAVPVRNH----HSEETEIFFRCRENRIT 220

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
             +P  +  L+    + L DN L   I            Y+  
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 65/366 (17%), Positives = 118/366 (32%), Gaps = 76/366 (20%)

Query: 125 LNNLKMFDLSGNSFNNSILSS----LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL 180
           L     F LS NSF N+I  +     +         L       ++ + +    N    L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS 240
            + R  + +L  P   P    +  L+++        N L  + E   SL++L   +    
Sbjct: 65  QLNRLNLSSL--PDNLP--PQITVLEITQ-------NALISLPELPASLEYLDACD---- 109

Query: 241 N------DSWTLNQVLWLSNNHFR-IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT 293
           N      +     + L + NN    +P  P      + L+  +A NN             
Sbjct: 110 NRLSTLPELPASLKHLDVDNNQLTMLPELP------ALLEYINADNN------------- 150

Query: 294 APTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
               QL  L                   SL +L V NN         + ++  SL   ++
Sbjct: 151 ----QLTMLPELPT--------------SLEVLSVRNNQLT-----FLPELPESLEALDV 187

Query: 354 SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN 413
           S N L+ S+P+    +  S+   +    +    EN     IP+++        + L +N 
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEI----FFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE--FCQLDWLQILDISDNNISGSLPSCFH 471
           LS +I + L   T       P+ +       +    +     +      N    +   +H
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

Query: 472 LLSIEQ 477
               E+
Sbjct: 302 AFEHEE 307

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 7e-13
 Identities = 58/337 (17%), Positives = 100/337 (29%), Gaps = 71/337 (21%)

Query: 91  LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN---SFNNSILSSLT 147
            F+ + + E  +L   N      NE  S  +   +N      L+     S  +++   +T
Sbjct: 29  YFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQIT 83

Query: 148 RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDM 207
            L       ++ N L  S+     +   +LE LD   N +  L  P       SL+HLD+
Sbjct: 84  VLE------ITQNALI-SLP----ELPASLEYLDACDNRLSTL--P---ELPASLKHLDV 127

Query: 208 SYAHIALNTNFLQIIGESMPSLKHLSLSN--FSPSNDSWTLNQVLWLSNNHFR-IPISPD 264
                    N L ++ E    L++++  N   +   +  T  +VL + NN    +P  P 
Sbjct: 128 DN-------NQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELP- 179

Query: 265 PLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLR 324
                  L+      N +        SL A   +                      ++  
Sbjct: 180 -----ESLEALDVSTNLL-------ESLPAVPVRNHHSE-----------------ETEI 210

Query: 325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLL 384
                 N     IP  I   L       +  N L     SS      S+     +     
Sbjct: 211 FFRCRENRIT-HIPENILS-LDPTCTIILEDNPL-----SSRIRESLSQQTAQPDYHGPR 263

Query: 385 LEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW 421
           +  +   G+              +   N  S     W
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 39/207 (18%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           SL  LD  +N         + ++  SL   ++  N L   +P                + 
Sbjct: 101 SLEYLDACDNRLS-----TLPELPASLKHLDVDNNQLT-MLPEL-----------PALLE 143

Query: 382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP 441
           ++  + N     +P+  +    L+ L + NN L+  +P+   +L  L    +  N LE  
Sbjct: 144 YINADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPELPESLEALD---VSTNLLES- 194

Query: 442 IPVEFCQLDWLQ----ILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE 497
           +P    +    +         +N I+  +P        E I  L     +IL  N L   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIP--------ENILSLDPTCTIILEDNPLSSR 245

Query: 498 VPVQLCGLNQLQLLDLSDNNLHGLIPP 524
           +   L                      
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 59/337 (17%), Positives = 100/337 (29%), Gaps = 74/337 (21%)

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV 380
               LLD+ NN+    +  +    L  L    +  N +     S      FS    L  +
Sbjct: 54  PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKI-----SKIHEKAFS---PLRKL 104

Query: 381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHL-E 439
           + L + +NH V EIP +L     L  L +++N +          L  +  I M  N L  
Sbjct: 105 QKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499
                       L  L IS+  ++  +P           +    L+ L L HN ++  + 
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT-GIPK----------DLPETLNELHLDHNKIQ-AIE 209

Query: 500 VQ-LCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHE---SYNNNSSLDKPFEISFDFRNT 554
           ++ L   ++L  L L  N +  +          L E     N  S +             
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL--------- 260

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-------PIGNLT 607
                                      L LL  + L  N  I  +               
Sbjct: 261 -------------------------PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRA 294

Query: 608 RIQILNLSHNNLTGTI--PSTFSKLEAYRNLDLSYNK 642
               ++L +N +      P+TF  +     +     K
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 58/282 (20%), Positives = 93/282 (32%), Gaps = 57/282 (20%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
            +P+ +S       L L NN++S         L  L  +++  N +       F  L  L
Sbjct: 47  AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
           Q L IS N++   +P           N  S L  L +  N +         GL  +  ++
Sbjct: 105 QKLYISKNHLV-EIPP----------NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 513 LSDNNLH--GLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFE 567
           +  N L   G  P  F    L+    S    + + K                        
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK------------------------ 189

Query: 568 FTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPST 626
                        +   L+ + L  NK I  I        +++  L L HN +      +
Sbjct: 190 ------------DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 627 FSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS 668
            S L   R L L  NKL+ ++P  L +L    V     NN++
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 108/375 (28%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           +  + DL  N  +         L  + +L L  N++   I  K F     L+ L + +N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM-PSLKHLSLSNFSPSNDSWT 245
           +  +  P       SL  L        ++ N ++ + + +   L+++             
Sbjct: 114 LVEI--PPNL--PSSLVELR-------IHDNRIRKVPKGVFSGLRNM------------- 149

Query: 246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS 305
               + +  N           F+  +L        ++                       
Sbjct: 150 --NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---------------------- 185

Query: 306 SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS 365
                    +P    ++L  L + +N  Q  I +E       L    +  N +       
Sbjct: 186 --------GIPKDLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQI-----RM 231

Query: 366 FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL 425
            E    S    L                          L+ L+L+NN LS ++P  L +L
Sbjct: 232 IENGSLS---FLPT------------------------LRELHLDNNKLS-RVPAGLPDL 263

Query: 426 TGLQHIIMPKNHLEGPIPVEFCQLDW------LQILDISDNNISGSL--PSCFHLLSIEQ 477
             LQ + +  N++      +FC + +         + + +N +      P+ F       
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR------ 317

Query: 478 INGLSGLSHLILAHN 492
              ++    +   + 
Sbjct: 318 --CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 46/290 (15%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF----QLKSLS 303
            +L L NN     +  D       L      NN+I         +    F    +L+ L 
Sbjct: 57  TLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKIS-------KIHEKAFSPLRKLQKLY 108

Query: 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNAL-DGSI 362
           +S    +    +P +   SL  L + +N  +  +P  +   L +++C  +  N L +   
Sbjct: 109 IS---KNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 363 PSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW- 421
                       F+   + +L + E      IP+ L +   L  L+L++N +   I    
Sbjct: 165 EPGA--------FDGLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHNKIQ-AIELED 212

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481
           L   + L  + +  N +          L  L+ L + +N +S  +P+            L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP--------DL 263

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLN------QLQLLDLSDNNL-HGLIPP 524
             L  + L  NN+        C +           + L +N + +  + P
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 50/267 (18%), Positives = 86/267 (32%), Gaps = 48/267 (17%)

Query: 69  VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNL 128
              L L N    EL +       F   Q L +L L  N I+  +  +  S      L  L
Sbjct: 56  TTLLDLQNNDISELRK-----DDFKGLQHLYALVLVNNKISK-IHEKAFSP-----LRKL 104

Query: 129 KMFDLSGNSFNNSILSSLTR--LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           +   +S N      L  +     SS+  L++  NR+   +    F    N+  ++M  N 
Sbjct: 105 QKLYISKNH-----LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIA--------------LNTNFLQIIGES----MPS 228
           ++N     G      L +L +S A +               L+ N +Q I          
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 229 LKHLSLSNFSPSN------DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNN-- 280
           L  L L +                 + L L NN  ++   P  L +   L++ + + N  
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLPDLKLLQVVYLHTNNI 276

Query: 281 -EIHAEITESHSLTAPTFQLKSLSLSS 306
            ++                   +SL +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 53/244 (21%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
           L+ +  ++  L   +P+ +        + +  N +      +F  L  L  L + +N IS
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                 F        + L  L  L ++ N+L  E+P  L   + L  L + DN +  +  
Sbjct: 92  KIHEKAF--------SPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPK 140

Query: 524 PFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG 579
             F        +    N                            +     +  A+   G
Sbjct: 141 GVFSGLRNMNCIEMGGNP---------------------------LENSGFEPGAF--DG 171

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             L+ L    +S  KL   IP        +  L+L HN +         +      L L 
Sbjct: 172 LKLNYL---RISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225

Query: 640 YNKL 643
           +N++
Sbjct: 226 HNQI 229

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 50/268 (18%), Positives = 78/268 (29%), Gaps = 68/268 (25%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
              + + L  N        S   C  L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 438 LEGPIPVE-FCQLDWLQILDISDNNISGSLPS-CFHLLSIEQINGLSGLSHLILAHNNLE 495
               +    F  L  L  L +    +   L    F         GL+ L +L L  N L+
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR--------GLAALQYLYLQDNALQ 142

Query: 496 GEVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNT 554
             +P      L  L  L L  N +  +    F                            
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-------------------------- 175

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILN 613
                                      L  L  + L  N+ + H+ P    +L R+  L 
Sbjct: 176 ---------------------------LHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207

Query: 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
           L  NNL+       + L A + L L+ N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 48/200 (24%), Positives = 70/200 (35%), Gaps = 20/200 (10%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           +L +L + +N     I       L  L   ++S NA   S+  +     F     L  + 
Sbjct: 57  NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFH---GLGRLH 108

Query: 382 WLLLEENHFVGEIPQ-SLSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLE 439
            L L+      E+          L+ LYL +N L   +P     +L  L H+ +  N + 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP 499
                 F  L  L  L +  N ++   P  F          L  L  L L  NNL     
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--------DLGRLMTLYLFANNLSALPT 218

Query: 500 VQLCGLNQLQLLDLSDNNLH 519
             L  L  LQ L L+DN   
Sbjct: 219 EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           + + + +  N     +P        +L+   +  N L     +  +   F+    L  + 
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVL-----ARIDAAAFT---GLALLE 83

Query: 382 WLLLEENHFVGEIPQS-LSKCFLLKGLYLNNNNLSGKIPQ-WLGNLTGLQHIIMPKNHLE 439
            L L +N  +  +  +       L  L+L+   L  ++       L  LQ++ +  N L+
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 440 GPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV 498
             +P + F  L  L  L +  N IS      F         GL  L  L+L  N +    
Sbjct: 143 A-LPDDTFRDLGNLTHLFLHGNRISSVPERAF--------RGLHSLDRLLLHQNRVAHVH 193

Query: 499 PVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528
           P     L +L  L L  NNL  L       
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 46/225 (20%), Positives = 77/225 (34%), Gaps = 42/225 (18%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMF 131
           ++L   R   +      A  F   + L  L L +N +A    +  A     T L  L+  
Sbjct: 37  IFLHGNRISHVP-----AASFRACRNLTILWLHSNVLA--RIDAAA----FTGLALLEQL 85

Query: 132 DLSGNSFNNSILSSL-----TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           DLS    +N+ L S+       L  + +L L    L+  +    F     L+ L ++ N 
Sbjct: 86  DLS----DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 187 IDNLVVPQG-FPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN----F 237
           +  L  P   F    +L HL +         N +  + E     + SL  L L       
Sbjct: 141 LQAL--PDDTFRDLGNLTHLFLHG-------NRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 238 SPSNDSWTLN--QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNN 280
              +    L     L+L  N+    +  + L     L+     +N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 40/199 (20%), Positives = 57/199 (28%), Gaps = 48/199 (24%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
            Q + +  N IS    + F             L+ L L  N L         GL  L+ L
Sbjct: 34  SQRIFLHGNRISHVPAASFR--------ACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 512 DLSDNNLHGLIPP--FFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           DLSDN     + P  F     LH           L         FR              
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-----FRG------------- 127

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPS 625
                          L+ L  + L  N  +  +P     +L  +  L L  N ++     
Sbjct: 128 ---------------LAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 626 TFSKLEAYRNLDLSYNKLN 644
            F  L +   L L  N++ 
Sbjct: 172 AFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 52/246 (21%), Positives = 78/246 (31%), Gaps = 53/246 (21%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
             +   L GN  ++   +S     ++  L L  N L   ID   F     LE LD+  N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES----MPSLKHLSLSNFSPSND 242
               V P  F     L  L        L+   LQ +G      + +L++L L +      
Sbjct: 92  QLRSVDPATFHGLGRLHTLH-------LDRCGLQELGPGLFRGLAALQYLYLQD------ 138

Query: 243 SWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTF----Q 298
               N +  L ++ FR         +   L     + N I        S+    F     
Sbjct: 139 ----NALQALPDDTFR---------DLGNLTHLFLHGNRI-------SSVPERAFRGLHS 178

Query: 299 LKSLSLS----SGYGDGPFR-LPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNI 353
           L  L L     +      FR L       L  L +  NN    +P E    L +L    +
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLSA-LPTEALAPLRALQYLRL 232

Query: 354 SMNALD 359
           + N   
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
           QL LS+   +      ++   F    +L +L L    +      +         L  L+ 
Sbjct: 84  QLDLSDNAQLR----SVDPATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQY 133

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
             L  N+       +   L ++  L L  NR+  S+  + F   ++L+ L + +N + ++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN 236
             P  F     L  L        L  N L  +       + +L++L L++
Sbjct: 193 -HPHAFRDLGRLMTLY-------LFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 29/169 (17%), Positives = 45/169 (26%), Gaps = 42/169 (24%)

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNN 537
           +    + L  N +             L +L L  N L  +    F        L  S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 538 N-SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI 596
              S+                        F    +             L  + L     +
Sbjct: 92  QLRSV--------------------DPATFHGLGR-------------LHTLHLDRCG-L 117

Query: 597 GHIPPPI-GNLTRIQILNLSHNNLTGTIPS-TFSKLEAYRNLDLSYNKL 643
             + P +   L  +Q L L  N L   +P  TF  L    +L L  N++
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 66/267 (24%)

Query: 174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSL 229
               + + +  N I ++     F   ++L  L        L++N L  I       +  L
Sbjct: 31  PAASQRIFLHGNRISHV-PAASFRACRNLTILW-------LHSNVLARIDAAAFTGLALL 82

Query: 230 KHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITES 289
           + L LS+                 N   R  + P       RL   H     +       
Sbjct: 83  EQLDLSD-----------------NAQLRS-VDPATFHGLGRLHTLHLDRCGL------- 117

Query: 290 HSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLS 349
             L    F+                L      +L+ L + +N  Q  +P +    L +L+
Sbjct: 118 QELGPGLFR---------------GLA-----ALQYLYLQDNALQA-LPDDTFRDLGNLT 156

Query: 350 CFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYL 409
              +  N +  S+P       F     L ++  LLL +N      P +      L  LYL
Sbjct: 157 HLFLHGNRIS-SVPE----RAFR---GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 410 NNNNLSGKIPQWLGNLTGLQHIIMPKN 436
             NNLS    + L  L  LQ++ +  N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 79/458 (17%), Positives = 145/458 (31%), Gaps = 88/458 (19%)

Query: 127 NLKMFDLSGNSFNNSILSSLTR-LSSVRSLKLSYNRLEGSIDVKEFDSF----NNLEVLD 181
           +++  D+     +++  + L   L   + ++L    L      K+  S       L  L+
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 62

Query: 182 MKRNEIDNLVVPQGFPHFKS----LEHLDMSYAHI----------ALNTNFLQIIGESMP 227
           ++ NE+ ++ V       ++    ++ L +    +           L T          P
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---------P 113

Query: 228 SLKHLSLSNFSPSNDSW-----------TLNQVLWLSNNHFRIPISPDP-------LFNH 269
           +L+ L LS+    +                 + L L        +S          L   
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS----LSAASCEPLASVLRAK 169

Query: 270 SRLKIFHAYNNEIHAEITE--SHSLTAPTFQLKSLSLS----SGYGDGPFRLPIHSHKSL 323
              K     NN+I+          L     QL++L L     +          + S  SL
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 324 RLLDVSNNNFQG----CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTN 379
           R L + +N         +   +      L    I    +  +        +     +L  
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKE 288

Query: 380 VRWLLLEENHFVGEIPQSLSKCFL-----LKGLYLNNNNLSGK----IPQWLGNLTGLQH 430
              L L  N    E  + L +  L     L+ L++ + + +          L     L  
Sbjct: 289 ---LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 431 IIMPKNHLEGPIPVEFCQL-----DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLS 485
           + +  N LE     E CQ        L++L ++D ++S S  SC  L +    N    L 
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS--SCSSLAATLLAN--HSLR 401

Query: 486 HLILAHNNLEGEVPVQLC-GLNQ----LQLLDLSDNNL 518
            L L++N L     +QL   + Q    L+ L L D   
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 64/450 (14%), Positives = 143/450 (31%), Gaps = 75/450 (16%)

Query: 89  AYLFTPFQQLESLSLSANNI--AGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           A L    QQ + + L    +  A C       S  +     L   +L  N   +  +  +
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARCK----DISSALRVNPALAELNLRSNELGDVGVHCV 76

Query: 147 TRL-----SSVRSLKLSYNRL--EGSIDVKE-FDSFNNLEVLDMKRNEIDNLVVPQGFPH 198
            +        ++ L L    L   G   +     +   L+ L +  N + +  +      
Sbjct: 77  LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136

Query: 199 FKS----LEHLDMSYAHIALNTNFLQIIGE---SMPSLKHLSLSNFSPSNDSWTL----- 246
                  LE L + Y  +  +    + +     + P  K L++SN   +     +     
Sbjct: 137 LLDPQCRLEKLQLEYCSL--SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194

Query: 247 ------NQVLWLSNNHFRIPISPD-------PLFNHSRLKIFHAYNNEIHAE--ITESHS 291
                  + L L +      ++ D        + + + L+     +N++           
Sbjct: 195 KDSPCQLEALKLESCG----VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250

Query: 292 LTAPTFQLKSLSLS----SGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPS 347
           L  P+ +L++L +     +  G G     + + +SL+ L ++ N         + + L  
Sbjct: 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310

Query: 348 LSC----FNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL 403
             C      +   +   +   S    + ++N  L     L +  N       + L +   
Sbjct: 311 PGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLE---LQISNNRLEDAGVRELCQGLG 366

Query: 404 -----LKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQL----- 449
                L+ L+L + ++S      +   L     L+ + +  N L     ++  +      
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426

Query: 450 DWLQILDISDNNISGSLPSCFHLLSIEQIN 479
             L+ L + D   S        L ++E+  
Sbjct: 427 CLLEQLVLYDIYWSEE--MEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 55/304 (18%), Positives = 98/304 (32%), Gaps = 53/304 (17%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNI--AGCVENEGASSREVTRLNNLK 129
           L+LS+    +     L   L  P  +LE L L   ++  A C       +  +    + K
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC----EPLASVLRAKPDFK 173

Query: 130 MFDLSGNSFNNSILSSLTRL-----SSVRSLKLSYNRL--EGSIDVKEFDSFN-NLEVLD 181
              +S N  N + +  L +        + +LKL    +  +   D+    +   +L  L 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 182 MKRNEIDN----LVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE---SMPSLKHLSL 234
           +  N++ +     + P        L  L +    I         +     +  SLK LSL
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI--TAKGCGDLCRVLRAKESLKELSL 291

Query: 235 SNFSPSND------------SWTLNQVLWLSNNHFRIPISPDP-------LFNHSRLKIF 275
           +     ++               L + LW+ +       +          L  +  L   
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQL-ESLWVKSCS----FTAACCSHFSSVLAQNRFLLEL 346

Query: 276 HAYNNEIHAEITE--SHSLTAPTFQLKSLSLS----SGYGDGPFRLPIHSHKSLRLLDVS 329
              NN +           L  P   L+ L L+    S          + ++ SLR LD+S
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 330 NNNF 333
           NN  
Sbjct: 407 NNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 53/366 (14%), Positives = 98/366 (26%), Gaps = 74/366 (20%)

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSC----FNISMNALDGSIPSSFEGHMFS 372
           +  + +L  L++ +N         +   L + SC     ++    L              
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLR 110

Query: 373 KNFNLTNVRWLLLEENHFVGEIPQSLSKCFL-----LKGLYLNNNNLSGK----IPQWLG 423
                  ++ L L +N       Q L +  L     L+ L L   +LS      +   L 
Sbjct: 111 TL---PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQL-----DWLQILDISDNNISGSLPSCFHLLSIEQI 478
                + + +  N +        CQ        L+ L +    ++    +C  L  I   
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGIVAS 225

Query: 479 NGLSGLSHLILAHNNLEGE-----VPVQLCGLNQLQLLDLSDNNLH--GLIPPFFYNTAL 531
              + L  L L  N L         P  L   ++L+ L + +  +   G          L
Sbjct: 226 K--ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-------GDL 276

Query: 532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK--SNAYTYQGRVLSLLSGID 589
                   SL                     +E+ +   +         G  L  L    
Sbjct: 277 CRVLRAKESL-----KELSLAG---------NELGDEGARLLCETLLEPGCQLESL---W 319

Query: 590 LSCNKL----IGHIPPPIGNLTRIQILNLSHNNLTGT--------IPSTFSKLEAYRNLD 637
           +           H    +     +  L +S+N L           +    S L     L 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR---VLW 376

Query: 638 LSYNKL 643
           L+   +
Sbjct: 377 LADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 299 LKSLSLS-SGYGDGPFRLPIHSHKSLRLLDVSNNNF--QGCIPVEIGDIL---PSLSCFN 352
           ++SL +      D  +   +   +  +++ + +       C    I   L   P+L+  N
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD--ISSALRVNPALAELN 62

Query: 353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHF----VGEIPQSLSKCFLLKGLY 408
           +  N L           + + +  +     L L+         G +  +L     L+ L+
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQK---LSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 409 LNNNNLSGKIPQWLG-----NLTGLQHIIMPKNHLEGPIPVEFCQL----DWLQILDISD 459
           L++N L     Q L          L+ + +    L          +       + L +S+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 460 NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL----NQLQLLDLSD 515
           N+I+    +   +L     +    L  L L    +  +    LCG+      L+ L L  
Sbjct: 180 NDIN---EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 516 NNLH 519
           N L 
Sbjct: 237 NKLG 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 42/241 (17%)

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDI-----LPSLSCFNISMNALDGSIPSSFEGHM 370
            +    +L  L++ +N         I D+     L  ++   +S N L     S+     
Sbjct: 58  GVQYLNNLIGLELKDNQ--------ITDLAPLKNLTKITELELSGNPL--KNVSAIA--- 104

Query: 371 FSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQH 430
                 L +++ L L     + ++   L+    L+ LYL+ N ++   P  L  LT LQ+
Sbjct: 105 -----GLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILA 490
           + +    +    P+    L  L  L   DN IS           I  +  L  L  + L 
Sbjct: 156 LSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS----------DISPLASLPNLIEVHLK 203

Query: 491 HNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISF 549
           +N +    P  L   + L ++ L++  +      +  N    +     + +   P  IS 
Sbjct: 204 NNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

Query: 550 D 550
           +
Sbjct: 262 N 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 44/280 (15%)

Query: 69  VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNL 128
            I++    +   +                + +LS     +         +   V  LNNL
Sbjct: 21  AIKIAAGKSNVTDTVT-------QADLDGITTLSAFGTGV--------TTIEGVQYLNNL 65

Query: 129 KMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEID 188
              +L  N   +  L+ L  L+ +  L+LS N L+   +V       +++ LD+   +I 
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT 120

Query: 189 NLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDS 243
           ++          +L+ L +    I   +         + +L++LS+ N      +P  + 
Sbjct: 121 DV---TPLAGLSNLQVLYLDLNQITNISPL-----AGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS 303
             L   L   +N         PL +   L   H  NN+I ++++   + +     L  ++
Sbjct: 173 SKL-TTLKADDNKIS---DISPLASLPNLIEVHLKNNQI-SDVSPLANTS----NLFIVT 223

Query: 304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGD 343
           L++           +++  +    V   +     P  I D
Sbjct: 224 LTNQTITNQ--PVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 35/242 (14%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
                 ++   +N+   V            L+ +      G       +  +  L+++  
Sbjct: 18  LANAIKIAAGKSNVTDTVT--------QADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L+L  N++    D+    +   +  L++  N + N+         +S++ LD++   I  
Sbjct: 68  LELKDNQIT---DLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITD 121

Query: 215 NTNFLQIIGESMPSLKHLSLSN----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
            T         + +L+ L L              T  Q L + N          PL N S
Sbjct: 122 VTPL-----AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS---DLTPLANLS 173

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSN 330
           +L    A +N+I  +I+   SL      L  + L +         P+ +  +L ++ ++N
Sbjct: 174 KLTTLKADDNKIS-DISPLASLP----NLIEVHLKNNQISDV--SPLANTSNLFIVTLTN 226

Query: 331 NN 332
             
Sbjct: 227 QT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 57/225 (25%)

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL 481
              L     I   K+++   +      LD +  L      ++          +IE +  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT----------TIEGVQYL 62

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNN 538
           + L  L L  N +    P  L  L ++  L+LS N L   +       ++     +    
Sbjct: 63  NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQI 119

Query: 539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH 598
           + +                                        LS L  + L  N+ I +
Sbjct: 120 TDVT-------PLAG----------------------------LSNLQVLYLDLNQ-ITN 143

Query: 599 IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           I P +  LT +Q L++ +  ++   P   + L     L    NK+
Sbjct: 144 ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 59/243 (24%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
              +    +N++  +     +L G+  +      +     V+   L+ L  L++ DN I+
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                      +  +  L+ ++ L L+ N L+      + GL  ++ LDL+   +   + 
Sbjct: 77  ----------DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD-VT 123

Query: 524 PFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
           P    + L       N  +++                                       
Sbjct: 124 PLAGLSNLQVLYLDLNQITNIS-------PLAG--------------------------- 149

Query: 581 VLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
            L+ L  + +   + +  + P + NL+++  L    N ++    S  + L     + L  
Sbjct: 150 -LTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKN 204

Query: 641 NKL 643
           N++
Sbjct: 205 NQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 44/263 (16%), Positives = 88/263 (33%), Gaps = 47/263 (17%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
            L N   +   +++    +    +    +  L      ++  I   +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N +    P++   L  +  L++S N +           ++  I GL  +  L L    + 
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK----------NVSAIAGLQSIKTLDLTSTQIT 120

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFE-----I 547
              P  L GL+ LQ+L L  N +   I P    T L          S L  P        
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLT 176

Query: 548 SFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLT 607
           +    + +         I + +  ++        L  L  + L  N++      P+ N +
Sbjct: 177 TLKADDNK---------ISDISPLAS--------LPNLIEVHLKNNQISDV--SPLANTS 217

Query: 608 RIQILNLSHNNLTGTIPSTFSKL 630
            + I+ L++  +T       + L
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 53/296 (17%)

Query: 167 DVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM 226
            +    +  N   +   ++ + + V          +  L      +           + +
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEGV-----QYL 62

Query: 227 PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEI 286
            +L  L L +          NQ+  L+           PL N +++       N +   +
Sbjct: 63  NNLIGLELKD----------NQITDLA-----------PLKNLTKITELELSGNPLK-NV 100

Query: 287 TESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILP 346
           +    L      +K+L L+S         P+    +L++L +  N      P+     L 
Sbjct: 101 SAIAGLQ----SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISPLA---GLT 151

Query: 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG 406
           +L   +I    +    P +          NL+ +  L  ++N  + +I   L+    L  
Sbjct: 152 NLQYLSIGNAQVSDLTPLA----------NLSKLTTLKADDNK-ISDIS-PLASLPNLIE 199

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
           ++L NN +S   P  L N + L  + +    +          L    ++       
Sbjct: 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 7e-13
 Identities = 45/277 (16%), Positives = 89/277 (32%), Gaps = 36/277 (12%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
           F +    +L   ++   V            LN++     + +   +  +  +  L +V  
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNE--------LNSIDQIIANNSDIKS--VQGIQYLPNVTK 69

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L L+ N+L    D+K   +  NL  L +  N+I +L         K L+ L + +  I+ 
Sbjct: 70  LFLNGNKLT---DIKPLTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISD 123

Query: 215 NTNFLQIIGESMPSLKHLSLSN---FSPSN-DSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
                      +P L+ L L N      +     T    L L +N         PL   +
Sbjct: 124 INGL-----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLT 175

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSN 330
           +L+  +   N I +++     L      L  L L S            +      +  ++
Sbjct: 176 KLQNLYLSKNHI-SDLRALAGLK----NLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 331 NNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
            +      +            N+  +  + +   SF 
Sbjct: 231 GSLVTPEIISDDGDYEKP---NVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 8e-13
 Identities = 42/219 (19%), Positives = 74/219 (33%), Gaps = 37/219 (16%)

Query: 69  VIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNL 128
            I+  L      +                ++ +  + ++I         S + +  L N+
Sbjct: 23  TIKDNLKKKSVTDAVT-------QNELNSIDQIIANNSDI--------KSVQGIQYLPNV 67

Query: 129 KMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEID 188
               L+GN    + +  LT L ++  L L  N+++   D+        L+ L ++ N I 
Sbjct: 68  TKLFLNGN--KLTDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGIS 122

Query: 189 NLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDS 243
           ++    G  H   LE L +    I   T         +  L  LSL +       P    
Sbjct: 123 DI---NGLVHLPQLESLYLGNNKITDITVL-----SRLTKLDTLSLEDNQISDIVPLAGL 174

Query: 244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282
             L Q L+LS NH         L     L +   ++ E 
Sbjct: 175 TKL-QNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 42/272 (15%), Positives = 78/272 (28%), Gaps = 59/272 (21%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
                    L++      +    ++   +  +  NN+++   +   +  L  +  + +  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N L    P+    L  L  L + +N I            +  +  L  L  L L HN + 
Sbjct: 75  NKLTDIKPLT--NLKNLGWLFLDENKIK----------DLSSLKDLKKLKSLSLEHNGIS 122

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFR 552
            ++   L  L QL+ L L +N +   I      T L       N  S +           
Sbjct: 123 -DING-LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIV-------PLA 172

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                                        L+ L  + LS N  I  +   +  L  + +L
Sbjct: 173 G----------------------------LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVL 202

Query: 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
            L          +  S L     +  +   L 
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 5e-12
 Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 59/243 (24%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
           +      +  +    P             + K  +   +     +L+ +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                     S++ I  L  ++ L L  N L    P  L  L  L  L L +N +   + 
Sbjct: 57  ----------SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS 103

Query: 524 PFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
                  L      +N  S ++                                      
Sbjct: 104 SLKDLKKLKSLSLEHNGISDIN-GLVH--------------------------------- 129

Query: 581 VLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
            L  L  + L  NK+       +  LT++  L+L  N ++  I    + L   +NL LS 
Sbjct: 130 -LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 184

Query: 641 NKL 643
           N +
Sbjct: 185 NHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 49/364 (13%), Positives = 101/364 (27%), Gaps = 90/364 (24%)

Query: 139 NNSI--LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGF 196
           +  I  +      +      L    +    D    +  N+++ +    ++I ++   QG 
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSV---QGI 61

Query: 197 PHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNH 256
            +  ++  L ++   +            ++ +L  L L            N++  LS   
Sbjct: 62  QYLPNVTKLFLNGNKLTDIKPL-----TNLKNLGWLFLDE----------NKIKDLS--- 103

Query: 257 FRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP 316
                    L +  +LK     +N I                   ++             
Sbjct: 104 --------SLKDLKKLKSLSLEHNGI-----------------SDIN------------G 126

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDI-----LPSLSCFNISMNALDGSIPSSFEGHMF 371
           +     L  L + NN         I DI     L  L   ++  N +     S       
Sbjct: 127 LVHLPQLESLYLGNNK--------ITDITVLSRLTKLDTLSLEDNQI-----SDIVPLA- 172

Query: 372 SKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
                LT ++ L L +NH + ++ ++L+    L  L L +     K      NL     +
Sbjct: 173 ----GLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 432 IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
                 L  P  +        +  ++  +    +    F       I       H  +  
Sbjct: 227 KNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

Query: 492 NNLE 495
              E
Sbjct: 285 PLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 3e-10
 Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 41/233 (17%)

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDI-----LPSLSCFNISMNALDGSIPSSFEGHM 370
            I    ++  L ++ N         + DI     L +L    +  N +            
Sbjct: 60  GIQYLPNVTKLFLNGNK--------LTDIKPLTNLKNLGWLFLDENKI-----KDLSSLK 106

Query: 371 FSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQH 430
                +L  ++ L LE N  + +I   L     L+ LYL NN ++      L  LT L  
Sbjct: 107 -----DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILA 490
           + +  N +   +P     L  LQ L +S N+IS           +  + GL  L  L L 
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS----------DLRALAGLKNLDVLELF 205

Query: 491 HNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK 543
                 +       L     +  +D +L    P    +   +E  N    L +
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 50/245 (20%), Positives = 79/245 (32%), Gaps = 47/245 (19%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 462
            K L L+ N L         +   LQ + + +  ++  I    +  L  L  L ++ N I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88

Query: 463 SGSLPS-CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521
             SL    F         GLS L  L+    NL       +  L  L+ L+++ N +   
Sbjct: 89  Q-SLALGAFS--------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 522 IPP-FFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYT 576
             P +F N      L  S N   S+                             +     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSI--------------------YCTDLRVLHQ----- 174

Query: 577 YQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636
               +  L   +DLS N  +  I P      R++ L L  N L       F +L + + +
Sbjct: 175 ----MPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 637 DLSYN 641
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 44/205 (21%)

Query: 87  LNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL 146
           L +Y F  F +L+ L LS   I      +GA       L++L    L+GN      + SL
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA----YQSLSHLSTLILTGNP-----IQSL 91

Query: 147 -----TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKS 201
                + LSS++ L      L  S++         L+ L++  N I +  +P+ F +  +
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 202 LEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHF 257
           LEHLD       L++N +Q I       +  +  L+LS              L LS N  
Sbjct: 151 LEHLD-------LSSNKIQSIYCTDLRVLHQMPLLNLS--------------LDLSLNP- 188

Query: 258 RIPISPDPLFNHSRLKIFHAYNNEI 282
            +       F   RLK      N++
Sbjct: 189 -MNFIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 26/179 (14%)

Query: 376 NLTNVRWLLLEENHFVGEIP----QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
           +   ++ L L     +  I     QSLS    L  L L  N +          L+ LQ +
Sbjct: 50  SFPELQVLDLSRCE-IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 432 IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS--CFHLLSIEQINGLSGLSHLIL 489
           +  + +L          L  L+ L+++ N I  S      F        + L+ L HL L
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF--------SNLTNLEHLDL 156

Query: 490 AHNNLEGEVPVQLCGLNQLQL----LDLSDNNLHGLIPPFFYNTALHE---SYNNNSSL 541
           + N ++      L  L+Q+ L    LDLS N ++ + P  F    L E     N   S+
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 62/290 (21%), Positives = 89/290 (30%), Gaps = 86/290 (29%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMS 208
            S ++L LS+N L   +    F SF  L+VLD+ R EI  +    G +     L  L   
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLI-- 82

Query: 209 YAHIALNTNFLQIIGESMPS-LKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLF 267
                L  N +Q +     S L  L               Q L     +    +   P+ 
Sbjct: 83  -----LTGNPIQSLALGAFSGLSSL---------------QKLVAVETNLAS-LENFPIG 121

Query: 268 NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLL 326
           +   LK  +  +N                  ++S  L        F  L      +L  L
Sbjct: 122 HLKTLKELNVAHN-----------------LIQSFKL-----PEYFSNLT-----NLEHL 154

Query: 327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE 386
           D+S+N  Q  I      +L  +   N+S                            L L 
Sbjct: 155 DLSSNKIQS-IYCTDLRVLHQMPLLNLS----------------------------LDLS 185

Query: 387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436
            N  +  I     K   LK L L+ N L          LT LQ I +  N
Sbjct: 186 LNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 39/205 (19%), Positives = 62/205 (30%), Gaps = 56/205 (27%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC-GLNQLQL 510
            + LD+S N +       F             L  L L+   ++  +       L+ L  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFF--------SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST 80

Query: 511 LDLSDNNLHGLIPPFFYN----TALHESYNNNSSL-DKPFEISFDFRNTEKKVEKKSHEI 565
           L L+ N +  L    F        L     N +SL + P                     
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH------------------ 122

Query: 566 FEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP--IGNLTRIQILNLSHNNLTGTI 623
                           L  L  ++++ N  I     P    NLT ++ L+LS N +    
Sbjct: 123 ----------------LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 624 PSTFSKL----EAYRNLDLSYNKLN 644
            +    L        +LDLS N +N
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN 190

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 7e-12
 Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 30/330 (9%)

Query: 196 FPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTL----NQVLW 251
                 L  + +S     L+  F + +         L + + +P +  W      N+   
Sbjct: 239 AEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSH 298

Query: 252 LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDG 311
           +           D L  H+   I+   +++    + +               L       
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR----- 353

Query: 312 PFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMF 371
                  S +   +L     + +    +E  +    L+   + M ALD  +        F
Sbjct: 354 ----CELSVEKSTVLQSELESCKELQELEPENKWCLLTI-ILLMRALDPLLYEKETLQYF 408

Query: 372 SKNFNLTNVRWLL--LEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQ 429
           S    +  +R        + F+ E      +   ++ L+L + +L+  +   L  L  + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVT 466

Query: 430 HIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
           H+ +  N L   +P     L  L++L  SDN +           +++ +  L  L  L+L
Sbjct: 467 HLDLSHNRLRA-LPPALAALRCLEVLQASDNALE----------NVDGVANLPRLQELLL 515

Query: 490 AHNNLEG-EVPVQLCGLNQLQLLDLSDNNL 518
            +N L+       L    +L LL+L  N+L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 6e-11
 Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 94  PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVR 153
            +  +  L L+  ++   + +       + +L  +   DLS N    ++  +L  L  + 
Sbjct: 439 EYADVRVLHLAHKDLT-VLCH-------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 154 SLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA 213
            L+ S N LE   +V    +   L+ L +  N +      Q       L  L++    + 
Sbjct: 490 VLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 214 LNTNFLQIIGESMPSLKHL 232
                 + + E +PS+  +
Sbjct: 547 QEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 37/288 (12%), Positives = 80/288 (27%), Gaps = 22/288 (7%)

Query: 373 KNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHII 432
           +  ++     +  EE        + L+    +  L L  +     +  W       +   
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE-WRTPDGRNRPSH 298

Query: 433 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS-IEQINGLSGLSHLILAH 491
           +    L      +       +++    ++    +                  L    L+ 
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSV 358

Query: 492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDF 551
                 +  +L    +LQ L+  +      I                       +   D 
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-DP 416

Query: 552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRV---------------LSLLSGIDLSCNKLI 596
                  + +S  + E +     Y     +               L L++ +DLS N+L 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 597 GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
             +PP +  L  +++L  S N L   +    + L   + L L  N+L 
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 14/190 (7%)

Query: 285 EITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDI 344
           + T   S      +L+ L   + +      L + +   L     +   F     V+    
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFN----------LTNVRWLLLEENHFVGEI 394
                  +  +           +  +                L  V  L L  N     +
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEG-PIPVEFCQLDWLQ 453
           P +L+    L+ L  ++N L   +   + NL  LQ +++  N L+             L 
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 454 ILDISDNNIS 463
           +L++  N++ 
Sbjct: 537 LLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 60/412 (14%), Positives = 111/412 (26%), Gaps = 65/412 (15%)

Query: 234 LSNFSP-SNDSWTLNQVLWLSNNHFRIPISPDPL---FNHSRLKIFHAYNNE---IHAEI 286
            SN+S     S  L Q+    ++  +  +  + L       +   F   N++    +   
Sbjct: 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234

Query: 287 TESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILP 346
               +          +S         F  P+     +  L +  +     +     D   
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKG 406
             S   +             +           + +  +L ++        S +    L  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT-DEQLFR 353

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHI-------------IMPKNHLEGPIPVEFCQLDWLQ 453
             L+    +  +   L +   LQ +             +M                  L+
Sbjct: 354 CELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 454 ILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 513
            +D         L S F L +       + +  L LAH +L   V   L  L  +  LDL
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDL 470

Query: 514 SDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTT 570
           S N L  L P       L     S N   ++D    ++                      
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENVD---GVAN--------------------- 506

Query: 571 KSNAYTYQGRVLSLLSGIDLSCNKLIGHIP--PPIGNLTRIQILNLSHNNLT 620
                      L  L  + L  N+ +       P+ +  R+ +LNL  N+L 
Sbjct: 507 -----------LPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 36/178 (20%)

Query: 113 ENEGASSREVTRLNNLKMFDLSGNSFNNSILS--------SLTRLSSVRSLKLSYNRLEG 164
           +        +   + LK  D    ++ + + S             + VR L L++  L  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 165 SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE 224
              +   +    +  LD+  N +  L  P      + LE L  S        N L+ + +
Sbjct: 455 --VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASD-------NALENV-D 502

Query: 225 SMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282
            + +L  L               Q L L NN  +   +  PL +  RL + +   N +
Sbjct: 503 GVANLPRL---------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 4e-11
 Identities = 94/655 (14%), Positives = 193/655 (29%), Gaps = 191/655 (29%)

Query: 30  QLKHFFNDPVNYLHDWVDAKGATDCCQWAN-----VECNNTTGRVIQLYLSNTRSMELEE 84
            ++ F  + +   + ++ +   T+  Q +      +E  +      Q++     S     
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 85  WYLNAYLFTPFQQLESLSLSANNI-----AGC----VENEGASSREVTRLNNLKMFDLS- 134
             L   L     +L      A N+      G     V  +   S +V    + K+F L+ 
Sbjct: 138 LKLRQAL----LELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 135 GNSFN-NSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVP 193
            N  +  ++L  L +L           +++ +   +   S N    +   + E+  L+  
Sbjct: 190 KNCNSPETVLEMLQKL---------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 194 QGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS 253
           + + +   L  L     ++                             ++   N      
Sbjct: 241 KPYEN--CLLVLL----NV----------------------------QNAKAWNAF---- 262

Query: 254 NNHFRIPISPDPLFNHSRLK-IFHAYNNEIHAEITESH---SLTAPTFQLKSLSLSSGYG 309
           N   +I ++       +R K +    +      I+  H   +LT      +  SL     
Sbjct: 263 NLSCKILLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSL----- 306

Query: 310 DGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGH 369
                          LL   +   Q  +P E+    P      +S+      I  S    
Sbjct: 307 ---------------LLKYLDCRPQ-DLPREVLTTNP----RRLSI------IAESI--- 337

Query: 370 MFSKNFNLTNVRWLLLEENHFVGEIPQSLS--KCFLLKGLYLNNNNLSGKIPQWLGNLTG 427
              ++   T   W  +  +     I  SL+  +    + ++   + LS            
Sbjct: 338 ---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLS------------ 379

Query: 428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
               + P +     IP     L W  ++      +   L   + L+  +       +  +
Sbjct: 380 ----VFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSI 431

Query: 488 IL---AHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP----FFYN-TALHESYNNNS 539
            L        E  +   +  ++   +    D++   LIPP    +FY+    H     + 
Sbjct: 432 YLELKVKLENEYALHRSI--VDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 540 SLDKPFEISF-DFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH 598
                F + F DFR  E+K+             S A+   G +L+ L    L       +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRH----------DSTAWNASGSILNTLQ--QL--KFYKPY 533

Query: 599 IPPPIGNLTRI--QILNLSHNNLTGTIPSTFSKL--------------EAYRNLD 637
           I        R+   IL+         I S ++ L              EA++ + 
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
            + ++ ++ L   + V ++   +     +K L +NN + +   P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
             +          L  L +LDIS +    S         + +IN L  ++ + L++N   
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDS--------ILTKINTLPKVNSIDLSYNGAI 149

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
            ++   L  L +L+ L++  + +H    
Sbjct: 150 TDIMP-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 38/242 (15%), Positives = 68/242 (28%), Gaps = 92/242 (38%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
           L  + L N N++        +LTG+++                     ++ L I++ + +
Sbjct: 46  LTYITLANINVT--------DLTGIEY------------------AHNIKDLTINNIHAT 79

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                     +   I+GLS L  L +   ++  +    L GL  L LLD+S +     I 
Sbjct: 80  ----------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 524 PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS 583
                                                                     L 
Sbjct: 130 TKINT-----------------------------------------------------LP 136

Query: 584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
            ++ IDLS N  I  I P +  L  ++ LN+  + +                L      +
Sbjct: 137 KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 644 NG 645
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 13/143 (9%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
              N++ L +   H        +S    L+ L +   +++      L  LT L  + +  
Sbjct: 64  YAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           +  +  I  +   L  +  +D+S N           +  I  +  L  L  L +  + + 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGA---------ITDIMPLKTLPELKSLNIQFDGVH 172

Query: 496 GEVPVQLCGLNQLQLLDLSDNNL 518
                 +    +L  L      +
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L ++N  +             +    LE L +   ++             ++ L +L +
Sbjct: 70  DLTINNIHATNYNP-------ISGLSNLERLRIMGKDV------TSDKIPNLSGLTSLTL 116

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
            D+S ++ ++SIL+ +  L  V S+ LSYN      D+    +   L+ L+++ + + + 
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDY 174

Query: 191 VVPQGFPHFKSLEHLDMSYAHIA 213
              +G   F  L  L      I 
Sbjct: 175 ---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 19/142 (13%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
              ++ L+++  +          +   ++ L+NL+   + G    +  + +L+ L+S+  
Sbjct: 65  AHNIKDLTINNIHA--------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L +S++  +    + + ++   +  +D+  N    +           L+ L++ +  +  
Sbjct: 117 LDISHSAHD-DSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGV-- 171

Query: 215 NTNFLQIIGESMPSLKHLSLSN 236
             ++  I  E  P L  L   +
Sbjct: 172 -HDYRGI--EDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 39/187 (20%)

Query: 97  QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLK 156
            L  ++L+  N+             +   +N+K   ++     N   + ++ LS++  L+
Sbjct: 45  SLTYITLANINV--------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 157 LSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT 216
           +    +  S  +       +L +LD+  +  D+ ++         +  +D+SY     N 
Sbjct: 95  IMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSY-----NG 147

Query: 217 NFLQIIG-ESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIF 275
               I+  +++P LK L++            + V                + +  +L   
Sbjct: 148 AITDIMPLKTLPELKSLNIQF----------DGVHDYR-----------GIEDFPKLNQL 186

Query: 276 HAYNNEI 282
           +A++  I
Sbjct: 187 YAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 321 KSLRLLDVSNNNFQGCIPVEIGDI-----LPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
            +++ L ++N +          +      L +L    I    +      +          
Sbjct: 66  HNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLS-------- 109

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
            LT++  L +  +     I   ++    +  + L+ N     I   L  L  L+ + +  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISG 464
           + +     +E      L  L      I G
Sbjct: 169 DGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
           LS L  + +    +     P +  LT + +L++SH+    +I +  + L    ++DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 642 KLNGKI 647
                I
Sbjct: 147 GAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
              +  + ++      +  P I  L+ ++ L +   ++T       S L +   LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT 675
             +  I  ++  L        + N     I  L 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 20/158 (12%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQW-LGNLTGLQHIIMPKNHLEGPIPVE-FCQLD 450
            +PQSL        L L++NNLS    +W    LT L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL 510
            L+ LD+S N++  +L            + L  L  L+L +N++          + QLQ 
Sbjct: 89  NLRYLDLSSNHLH-TLDE-------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 511 LDLSDNNLHGLIPPFFYN-------TALHESYNNNSSL 541
           L LS N +         +         L  S N    L
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 51/197 (25%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQL 510
             +LD+S NN+S  L + +          L+ L  L+L+HN+L   +  +    +  L+ 
Sbjct: 41  TALLDLSHNNLS-RLRAEWTP------TRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 511 LDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           LDLS N+LH L    F +      L    N+   +D        F +             
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-----RNAFED------------- 134

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP----PIGNLTRIQILNLSHNNLTGT 622
                          ++ L  + LS N++    P         L ++ +L+LS N L   
Sbjct: 135 ---------------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 623 IPSTFSKLEAYRNLDLS 639
             +   KL A+    L 
Sbjct: 179 PLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 22/151 (14%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN---SFNNSILSSLTR 148
            T    L SL LS N++     +  A       + NL+  DLS N   + +  + S L  
Sbjct: 60  PTRLTNLHSLLLSHNHLN--FISSEA----FVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113

Query: 149 LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMS 208
           L     L L  N +   +D   F+    L+ L + +N+I      +       L  L   
Sbjct: 114 L---EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM-- 166

Query: 209 YAHIALNTNFLQIIGE----SMPSLKHLSLS 235
              + L++N L+ +       +P+     L 
Sbjct: 167 --LLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 35/187 (18%)

Query: 127 NLKMFDLSGNSFNNSILS--SLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
              + DLS N+ +  + +  + TRL+++ SL LS+N L   I  + F    NL  LD+  
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 185 NEIDNLVVPQG-FPHFKSLEHLDMSYAHIALNTNFLQIIGES----MPSLKHLSLSNFSP 239
           N +  L   +  F   ++LE L        L  N + ++  +    M  L+ L LS    
Sbjct: 98  NHLHTL--DEFLFSDLQALEVLL-------LYNNHIVVVDRNAFEDMAQLQKLYLSQ--- 145

Query: 240 SNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQL 299
                  NQ+                     +L +    +N++  ++  +     P +  
Sbjct: 146 -------NQISRFPVELI------KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVK 191

Query: 300 KSLSLSS 306
             L L +
Sbjct: 192 NGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 40/142 (28%)

Query: 508 LQLLDLSDNNLHGLIP-PFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS 562
             LLDLS NNL  L             +L  S+N+ + +      +F             
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---AFVP----------- 86

Query: 563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTG 621
                              +  L  +DLS N L   +   +  +L  +++L L +N++  
Sbjct: 87  -------------------VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 622 TIPSTFSKLEAYRNLDLSYNKL 643
              + F  +   + L LS N++
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 248 QVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306
            +L LS+N+    +  +      + L      +N ++        +++  F         
Sbjct: 42  ALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLN-------FISSEAFV-------- 85

Query: 307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSF 366
                   +P     +LR LD+S+N+    +   +   L +L    +  N +   +    
Sbjct: 86  -------PVP-----NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR-- 129

Query: 367 EGHMFSKNFNLTNVRWLLLEENHFVGEIP----QSLSKCFLLKGLYLNNNNLSGKIPQWL 422
             + F    ++  ++ L L +N      P    +  +K   L  L L++N L       L
Sbjct: 130 --NAFE---DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 423 GNLTGLQH 430
             L     
Sbjct: 184 QKLPAWVK 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 33/216 (15%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
           F +    +L   ++   V            LN++     + +   +  +  +  L +V  
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNE--------LNSIDQIIANNSDIKS--VQGIQYLPNVTK 72

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L L+ N+L    D+K   +  NL  L +  N++ +L         K L+ L + +  I+ 
Sbjct: 73  LFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGISD 126

Query: 215 NTNFLQIIGESMPSLKHLSLSNFSPSN----DSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
                      +P L+ L L N   ++       T    L L +N         PL   +
Sbjct: 127 INGL-----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLT 178

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS 306
           +L+  +   N I +++     L      L  L L S
Sbjct: 179 KLQNLYLSKNHI-SDLRALAGLK----NLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 41/271 (15%), Positives = 75/271 (27%), Gaps = 59/271 (21%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
                    L++      +    ++   +  +  NN+++   +   +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N L    P     L  L  L + +N +            +  +  L  L  L L HN + 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK----------DLSSLKDLKKLKSLSLEHNGIS 125

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFR 552
                 L  L QL+ L L +N +   I      T L       N  S +           
Sbjct: 126 DING--LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIV-------PLA 175

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL 612
                                        L+ L  + LS N  I  +   +  L  + +L
Sbjct: 176 G----------------------------LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVL 205

Query: 613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
            L          +  S L     +  +   L
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 55/252 (21%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
                L   +++  +      L  +  II   + ++    +++     +  L ++ N ++
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNGNKLT 81

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                      I+ +  L  L  L L  N ++      L  L +L+ L L  N +   I 
Sbjct: 82  ----------DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN 128

Query: 524 PFFYNTALHE-SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL 582
              +   L      NN                         +I + T  S         L
Sbjct: 129 GLVHLPQLESLYLGNN-------------------------KITDITVLSR--------L 155

Query: 583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK 642
           + L  + L  N+ I  I P +  LT++Q L LS N+++       + L+    L+L   +
Sbjct: 156 TKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211

Query: 643 LNGKIPRQLVEL 654
              K       L
Sbjct: 212 CLNKPINHQSNL 223

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 59/244 (24%)

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
           L          +                  + K  +   +     +L+ +  +  ++++I
Sbjct: 3   LGSETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 58

Query: 463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI 522
                      S++ I  L  ++ L L  N L    P  L  L  L  L L +N +   +
Sbjct: 59  K----------SVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L 105

Query: 523 PPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG 579
                   L      +N  S ++                                     
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDIN-GLV--------------------------------- 131

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             L  L  + L  NK+       +  LT++  L+L  N ++  I    + L   +NL LS
Sbjct: 132 -HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLS 186

Query: 640 YNKL 643
            N +
Sbjct: 187 KNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 33/216 (15%)

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
             +   S+  +  +N++ +    ++    LP+++   ++ N L                 
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQGIQY---LPNVTKLFLNGNKL----------TDIKPLA 87

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           NL N+ WL L+EN  V ++  SL     LK L L +N +S  I   L +L  L+ + +  
Sbjct: 88  NLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGN 143

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS----------IEQINGLSGLS 485
           N +     +   +L  L  L + DN IS  +     L            I  +  L+GL 
Sbjct: 144 NKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRALAGLK 200

Query: 486 HLI---LAHNNLEGEVPVQLCGLNQLQLLDLSDNNL 518
           +L    L       +       L     +  +D +L
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 31/188 (16%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSS 151
                 +  L L+ N +           + +  L NL    L  N   +  LSSL  L  
Sbjct: 64  IQYLPNVTKLFLNGNKL--------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKK 113

Query: 152 VRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH 211
           ++SL L +N +    D+        LE L +  N+I ++           L+ L +    
Sbjct: 114 LKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ 167

Query: 212 IALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPDPL 266
           I+            +  L++L LS               L  VL L +          P+
Sbjct: 168 ISDIVPL-----AGLTKLQNLYLSKNHISDLRALAGLKNL-DVLELFSQ----ECLNKPI 217

Query: 267 FNHSRLKI 274
            + S L +
Sbjct: 218 NHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 37/253 (14%)

Query: 167 DVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM 226
            +   D+F      ++K+  + + V         S++ +  + + I           + +
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQGI-----QYL 67

Query: 227 PSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNE 281
           P++  L L+        P  +   L   L+L  N  +       L +  +LK     +N 
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNL-GWLFLDENKVK---DLSSLKDLKKLKSLSLEHNG 123

Query: 282 IHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEI 341
           I ++I     L     QL+SL L +          +     L  L + +N     +P+  
Sbjct: 124 I-SDINGLVHLP----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA- 175

Query: 342 GDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC 401
              L  L    +S N +                  L N+  L L     + +     S  
Sbjct: 176 --GLTKLQNLYLSKNHIS----------DLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 402 FLLKGLYLNNNNL 414
            +   +   + +L
Sbjct: 224 VVPNTVKNTDGSL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 54/276 (19%), Positives = 82/276 (29%), Gaps = 54/276 (19%)

Query: 248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSG 307
             L       R+ I          L+      N++   I                     
Sbjct: 33  IELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVI--------------------- 70

Query: 308 YGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFE 367
                F     +   L  + +   N    I  E    LP+L    IS   +   +P    
Sbjct: 71  -EADVF----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVH- 123

Query: 368 GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK--CFLLKGLYLNNNNLSGKIPQWLGNL 425
                   +      L +++N  +  I ++      F    L+LN N +  +I     N 
Sbjct: 124 ------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176

Query: 426 TGLQHI-IMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
           T L  + +   N+LE  +P + F       ILDIS   I  SLPS           GL  
Sbjct: 177 TQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIH-SLPS----------YGLEN 224

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH 519
           L  L         ++P  L  L  L    L+    H
Sbjct: 225 LKKLRARSTYNLKKLPT-LEKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 39/241 (16%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           S R+     +     IP    D+  +       +  L        +   FS      ++ 
Sbjct: 10  SNRVFLCQESKVTE-IP---SDLPRNAIELRFVLTKL-----RVIQKGAFS---GFGDLE 57

Query: 382 WLLLEENHFVGEIP----QSLSKCFLLKGLYL-NNNNLSGKIPQWLGNLTGLQHIIMPKN 436
            + + +N  +  I      +L K   L  + +   NNL    P+   NL  LQ++++   
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPK---LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHLLS------------IEQI----- 478
            ++    V         +LDI DN    ++    F  LS            I++I     
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNN 537
           NG       +  +NNLE        G +   +LD+S   +H L      N   L      
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 538 N 538
           N
Sbjct: 235 N 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 40/258 (15%), Positives = 67/258 (25%), Gaps = 51/258 (19%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDW 451
           EIP  L +      L      L             L+ I + +N +   I  + F  L  
Sbjct: 23  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
           L  + I   N    +         E    L  L +L++++  ++    V      Q  LL
Sbjct: 81  LHEIRIEKANNLLYINP-------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 512 DLSDNNLHGLIPPF-FYN-----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEI 565
           D+ DN     I    F         L  + N    +                     +  
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--------------------HNSA 173

Query: 566 FEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIP 624
           F                 L        N  +  +P  +    +   IL++S   +     
Sbjct: 174 F-------------NGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 625 STFSKLEAYRNLDLSYNK 642
                L+  R       K
Sbjct: 220 YGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 45/300 (15%), Positives = 87/300 (29%), Gaps = 67/300 (22%)

Query: 127 NLKMFDLSGNSFNN---SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMK 183
           + ++F    +        +  +   L           +L   I    F  F +LE +++ 
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNAIELR------FVLTKLR-VIQKGAFSGFGDLEKIEIS 62

Query: 184 RNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIG----ESMPSLKHLSLSN--- 236
           +N++  ++    F +   L  + +         N L  I     +++P+L++L +SN   
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIE------KANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 237 -FSPSNDSWTL--NQVLWLSNNHFRIPISPDPLFNHS-RLKIFHAYNNEIHAEITESHSL 292
              P           +L + +N     I  +     S    I     N I         +
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-------QEI 169

Query: 293 TAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFN 352
               F    L                      L    NNN +  +P ++          +
Sbjct: 170 HNSAFNGTQL--------------------DELNLSDNNNLE-ELPNDVFHGASGPVILD 208

Query: 353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN 412
           IS   +      S   +      NL  +R           ++P +L K   L    L   
Sbjct: 209 ISRTRI-----HSLPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLN---N 127
           ++ +    ++     Y+N   F     L+ L +S   I    +     S +   L+   N
Sbjct: 83  EIRIEKANNLL----YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEI 187
           + +  +  NSF    LS  + +     L L+ N ++  I    F+     E+     N +
Sbjct: 139 INIHTIERNSFVG--LSFESVI-----LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190

Query: 188 DNLVVPQGFPHFKSLEHLDMSYAHI-ALNTNFLQIIGESMPSLKHLSLSNFS--PSNDSW 244
           + L     F        LD+S   I +L +  L    E++  L+  S  N    P+ +  
Sbjct: 191 EEL-PNDVFHGASGPVILDISRTRIHSLPSYGL----ENLKKLRARSTYNLKKLPTLEKL 245

Query: 245 TLNQVLWLSNN 255
                  L+  
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 46/269 (17%), Positives = 86/269 (31%), Gaps = 41/269 (15%)

Query: 55  CQWANVECNNTTGRVIQLYL-SNTRSMELEE---WYLNAYLFTPFQQLESLSLSANNIAG 110
           C      C  +    I   L  N   +         +    F+ F  LE + +S N++  
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 111 CVENEGASSREVTRLNNLKMFDLSGN----SFNNSILSSLTRLSSVRSLKLSYNRLEGSI 166
            +E +  S+     L  L    +         N     +L  L   + L +S   ++  +
Sbjct: 69  VIEADVFSN-----LPKLHEIRIEKANNLLYINPEAFQNLPNL---QYLLISNTGIK-HL 119

Query: 167 DVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM 226
                       +LD++ N   + +    F        +      + LN N +Q I  S 
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI------LWLNKNGIQEIHNSA 173

Query: 227 ---PSLKHLSLSN-----FSPSN--DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFH 276
                L  L+LS+       P++     +   +L +S       +    L N  +L+   
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232

Query: 277 AYNNEIHAEITESHSLTAPTFQLKSLSLS 305
            YN +   ++     L      L   SL+
Sbjct: 233 TYNLK---KLPTLEKLV----ALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 29/201 (14%), Positives = 48/201 (23%), Gaps = 49/201 (24%)

Query: 451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQ 509
               L      +       F         G   L  + ++ N++   +       L +L 
Sbjct: 31  NAIELRFVLTKLRVIQKGAFS--------GFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82

Query: 510 LLDLSD-NNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE 564
            + +   NNL  + P  F N      L  S      L           +           
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-----DVHKIH----------- 126

Query: 565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLT-RIQILNLSHNNLTGT 622
                                  +D+  N  I  I       L+    IL L+ N +   
Sbjct: 127 -----------------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169

Query: 623 IPSTFSKLEAYRNLDLSYNKL 643
             S F+  +         N L
Sbjct: 170 HNSAFNGTQLDELNLSDNNNL 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 35/167 (20%)

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP--FFYNTALHESYNNNS 539
                L      L         G   L+ +++S N++  +I    F     LHE     +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI 599
                             +   + E F+                 L  + +S    I H+
Sbjct: 90  ----------------NNLLYINPEAFQNLPN-------------LQYLLISNTG-IKHL 119

Query: 600 PPPI-GNLTRIQILNLSHNNLTGTIPS-TFSKLEA-YRNLDLSYNKL 643
           P     +  +  +L++  N    TI   +F  L      L L+ N +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 70/495 (14%), Positives = 148/495 (29%), Gaps = 65/495 (13%)

Query: 54  CCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLS----ANNIA 109
           C  W  +E         ++++ N  ++          +   F ++ S+ L       +  
Sbjct: 34  CKSWYEIERWCRR----KVFIGNCYAVSPAT------VIRRFPKVRSVELKGKPHFADFN 83

Query: 110 GCVENEGASSRE-----VTRLNNLKMFDLSGNSFNNSILSSLTR-LSSVRSLKLSYNRLE 163
              +  G           +    L+   L      +  L  + +   + + L LS     
Sbjct: 84  LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143

Query: 164 GSIDVKEF-DSFNNLEVLDMKRNEIDNL---VVPQGFPHFKSLEHLDMSYAHIALNTNFL 219
            +  +     +  NL+ LD++ +++D++    +      + SL  L++S     ++ + L
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203

Query: 220 QIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIF--HA 277
           + +    P+LK L L+   P     TL                   L    +L+      
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLATL-------------------LQRAPQLEELGTGG 244

Query: 278 YNNEIHAEITESHSLTAPTF-QLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGC 336
           Y  E+  ++    S+      +L+ LS                   L  L++S    Q  
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 337 IPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI-P 395
             V++    P L    +     D  +          +   +      ++E N  + E   
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 396 QSLSK-CFLLKGLYLNNNNLSGKIPQWLG-NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQ 453
            S+S  C  L+ +      ++      +  N   +    +        I  +      L+
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL------CIIEPKAPDYLTLE 418

Query: 454 ILDISDNNISGSLPS--------CFHLLSIEQI-NGLSGLSHLILAHNNLEGEVPVQL-C 503
            LDI    I                     E I      +  L +A           +  
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 504 GLNQLQLLDLSDNNL 518
           G + L+ L++ D   
Sbjct: 479 GCDSLRKLEIRDCPF 493

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 75  SNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLS 134
           S +  M+++              +  L L          N+G          NL+   L 
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKS-----NDGKIEGLTAEFVNLEFLSLI 57

Query: 135 GNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQ 194
                   +S+L +L  ++ L+LS NR+         +   NL  L++  N++ ++   +
Sbjct: 58  NVGL--ISVSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 195 GFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHL 232
                + L+ LD+    +    ++ + + + +P L +L
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 373 KNFNLTNVRWLLLEENHF-VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
           +N     VR L+L+      G+I    ++   L+ L L N  L   +   L  L  L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 432 IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
            + +N + G + +   +L  L  L++S N +         + ++E +  L  L  L L +
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-------DISTLEPLKKLECLKSLDLFN 129

Query: 492 N---NLEGEVPVQLCGLNQLQLLDLSDN 516
               NL          L QL  LD  D 
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 148 RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDM 207
             ++VR L L   +            F NLE L +    + ++      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 208 SYAHIALNTNFLQIIGESMPSLKHLSLSN 236
           S   I      L ++ E +P+L HL+LS 
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSG 104

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 91  LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLS 150
           L   F  LE LSL    +   V N       + +L  LK  +LS N     +     +L 
Sbjct: 44  LTAEFVNLEFLSLINVGLI-SVSN-------LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLV--VPQGFPHFKSLEHLD 206
           ++  L LS N+L+    ++       L+ LD+   E+ NL       F     L +LD
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ 507
           +   L+ L + +  +           S+  +  L  L  L L+ N + G + +    L  
Sbjct: 47  EFVNLEFLSLINVGLI----------SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 508 LQLLDLSDNNLHGL 521
           L  L+LS N L  +
Sbjct: 97  LTHLNLSGNKLKDI 110

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 80  MELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFN 139
           ME+               ++ L L  +       NEG           L+          
Sbjct: 1   MEMGRRIHLELRNRTPSDVKELVLDNSRS-----NEGKLEGLTDEFEELEFLSTINVGL- 54

Query: 140 NSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHF 199
            + +++L +L+ ++ L+LS NR+         +   NL  L++  N+I +L   +     
Sbjct: 55  -TSIANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112

Query: 200 KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHL 232
           ++L+ LD+    +    ++ + + + +P L +L
Sbjct: 113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 373 KNFNLTNVRWLLLEENHF-VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
           +N   ++V+ L+L+ +    G++     +   L+ L   N  L+  I   L  L  L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 432 IMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH 491
            +  N + G + V   +   L  L++S N I         L +IE +  L  L  L L +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-------DLSTIEPLKKLENLKSLDLFN 122

Query: 492 N 492
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
           +L L N+RS E +       L   F++LE LS     +   + N       + +LN LK 
Sbjct: 21  ELVLDNSRSNEGK----LEGLTDEFEELEFLSTINVGLT-SIAN-------LPKLNKLKK 68

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
            +LS N  +  +     +  ++  L LS N+++    ++      NL+ LD+   E+ NL
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 191 ------VVPQGFPHFKSLEHLD 206
                 V    F     L +LD
Sbjct: 129 NDYRENV----FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 148 RLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDM 207
             S V+ L L  +R          D F  LE L      + ++      P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLEL 71

Query: 208 SYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLF 267
           S   +   +  L+++ E  P+L                    L LS N  +   + +PL 
Sbjct: 72  SDNRV---SGGLEVLAEKCPNL------------------THLNLSGNKIKDLSTIEPLK 110

Query: 268 NHSRLKIFHAYNNEI 282
               LK    +N E+
Sbjct: 111 KLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ 507
           + + L+ L   +  ++          SI  +  L+ L  L L+ N + G + V       
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 508 LQLLDLSDNNLHGL 521
           L  L+LS N +  L
Sbjct: 90  LTHLNLSGNKIKDL 103

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
            +   L L EN        +L     L  L L+   L+ K+    G L  L  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 438 LEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFH--------LLSIEQI--------NG 480
           L+  +P+    L  L +LD+S N ++ SLP              L   ++          
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 481 LSGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNNLHGLIPPFFYNTALHESY-NNN 538
              L  L LA+NNL  E+P  L  GL  L  L L +N+L+ +   FF +  L  ++ + N
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 48/196 (24%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
             IL +S+N +     +             + L+ L L    L  ++ V    L  L  L
Sbjct: 33  TTILHLSENLLYTFSLATLM--------PYTRLTQLNLDRAELT-KLQV-DGTLPVLGTL 82

Query: 512 DLSDNNLHGLIPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF 568
           DLS N L  L        AL     S+N  +SL                           
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL--------------------PLGAL-- 120

Query: 569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTF 627
                      R L  L  + L  N+L   +PP +     +++ L+L++NNLT       
Sbjct: 121 -----------RGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 628 SKLEAYRNLDLSYNKL 643
           + LE    L L  N L
Sbjct: 169 NGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 34/195 (17%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
            L+LS                  P+ +L  L+L    +           +    L  L  
Sbjct: 35  ILHLSENLLYTFS-----LATLMPYTRLTQLNLDRAEL--------TKLQVDGTLPVLGT 81

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
            DLS N    S+      L ++  L +S+NRL  S+ +        L+ L +K NE+  L
Sbjct: 82  LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139

Query: 191 VVPQG-FPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN---FSPSND 242
             P G       LE L        L  N L  +       + +L  L L     ++    
Sbjct: 140 --PPGLLTPTPKLEKLS-------LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 243 SWTLN--QVLWLSNN 255
            +  +     +L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 45/243 (18%), Positives = 72/243 (29%), Gaps = 54/243 (22%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
              +  +  NL+  +P           + + +N L             L  L++    ++
Sbjct: 12  HLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP 523
                      ++    L  L  L L+HN L+  +P+    L  L +LD+S N L  L  
Sbjct: 69  ----------KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 524 PFFYN-TALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG 579
                   L E     N   +L                       +   T K        
Sbjct: 118 GALRGLGELQELYLKGNELKTL--------------------PPGLLTPTPK-------- 149

Query: 580 RVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638
                L  + L+ N L   +P  +   L  +  L L  N+L  TIP  F          L
Sbjct: 150 -----LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 639 SYN 641
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 32/188 (17%)

Query: 127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNE 186
           +  +  LS N      L++L   + +  L L    L   + V    +   L  LD+  N+
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQ 88

Query: 187 IDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSN----FS 238
           + +L  P       +L  LD       ++ N L  +       +  L+ L L        
Sbjct: 89  LQSL--PLLGQTLPALTVLD-------VSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 239 PSN--DSWTLNQVLWLSNNHFRIPISPDPLFNH-SRLKIFHAYNNEIHAEITESHSLTAP 295
           P          + L L+NN   +   P  L N    L       N +       +++   
Sbjct: 140 PPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSL-------YTIPKG 190

Query: 296 TFQLKSLS 303
            F    L 
Sbjct: 191 FFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 49/241 (20%), Positives = 75/241 (31%), Gaps = 68/241 (28%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
                L LS N L  +  +     +  L  L++ R E+  L V         L  LD   
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD--- 83

Query: 210 AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
               L+ N LQ +     +L  L                VL +S N  R+   P      
Sbjct: 84  ----LSHNQLQSLPLLGQTLPAL---------------TVLDVSFN--RLTSLPLGALRG 122

Query: 270 -SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLLD 327
              L+  +   N                 +LK+L        G     P      L  L 
Sbjct: 123 LGELQELYLKGN-----------------ELKTLP------PGLLTPTP-----KLEKLS 154

Query: 328 VSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEE 387
           ++NNN    +P  + + L +L    +  N+L  +IP  F        F    + +  L  
Sbjct: 155 LANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGF--------FGSHLLPFAFLHG 204

Query: 388 N 388
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
            + L+ ++L   +L        G L  +  L+LSHN L  ++P     L A   LD+S+N
Sbjct: 54  YTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 642 KLNGKIP----RQLVEL 654
           +L   +P    R L EL
Sbjct: 111 RLT-SLPLGALRGLGEL 126

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 56/236 (23%)

Query: 409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 468
                ++   P     L       + K  +   +  +  +L  +Q  +  ++NI      
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ----- 54

Query: 469 CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528
                S+  +   + L  L L+HN +    P  L  L +L+ L ++ N L  L       
Sbjct: 55  -----SLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC 107

Query: 529 -TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG 587
            + L    N     D          +                            L  L  
Sbjct: 108 LSRLFLDNNELRDTD-------SLIH----------------------------LKNLEI 132

Query: 588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL 643
           + +  NK +  I   +G L+++++L+L  N +T       ++L+    +DL+  K 
Sbjct: 133 LSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 29/192 (15%)

Query: 95  FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRS 154
                  +L   ++   V  +         L+ ++ F+   ++  +  L+ +   ++++ 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQKE--------LSGVQNFNGDNSNIQS--LAGMQFFTNLKE 67

Query: 155 LKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIAL 214
           L LS+N++    D+        LE L + RN + NL           L  L +    +  
Sbjct: 68  LHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIPS----ACLSRLFLDNNELRD 120

Query: 215 NTNFLQIIGESMPSLKHLSLSNFSPSN----DSWTLNQVLWLSNNHFRIPISPDPLFNHS 270
             +        + +L+ LS+ N    +       +  +VL L  N      +   L    
Sbjct: 121 TDSL-----IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLK 172

Query: 271 RLKIFHAYNNEI 282
           ++        + 
Sbjct: 173 KVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 35/204 (17%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
            L+ V+    + ++   +    +     LK L+L++N +S  +   L +LT L+ + + +
Sbjct: 39  ELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNR 94

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE 495
           N L+    +    L     L + +N +             + +  L  L  L + +N L+
Sbjct: 95  NRLKNLNGIPSACL---SRLFLDNNELR----------DTDSLIHLKNLEILSIRNNKLK 141

Query: 496 GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE-SYNNNSSLDKPFEISFDFRNT 554
             V   L  L++L++LDL  N +            ++         +++P +   +    
Sbjct: 142 SIVM--LGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI- 197

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQ 578
              V+            SN  +Y 
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYV 221

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
                N+    L            F  L+ L LS N I+  +         +  L  L+ 
Sbjct: 45  NFNGDNSNIQSLAG-------MQFFTNLKELHLSHNQIS-DLSP-------LKDLTKLEE 89

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
             ++ N   N  L+ +     +  L L  N L    D        NLE+L ++ N++ ++
Sbjct: 90  LSVNRNRLKN--LNGIPSA-CLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLKSI 143

Query: 191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVL 250
                      LE LD+    I             +  +  + L+     N+       L
Sbjct: 144 ---VMLGFLSKLEVLDLHGNEITNTGGL-----TRLKKVNWIDLTGQKCVNEPVKYQPEL 195

Query: 251 WLSNN 255
           +++N 
Sbjct: 196 YITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 33/200 (16%), Positives = 71/200 (35%), Gaps = 28/200 (14%)

Query: 139 NNSI--LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGF 196
              I  +     L++     L    +    D+      + ++  +   + I +L    G 
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSL---AGM 59

Query: 197 PHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN---FSPSNDSWTLNQVLWLS 253
             F +L+ L +S+  I+  +       + +  L+ LS++     + +         L+L 
Sbjct: 60  QFFTNLKELHLSHNQISDLSPL-----KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114

Query: 254 NNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS-GYGDGP 312
           NN  R     D L +   L+I    NN++   I     L+    +L+ L L      +  
Sbjct: 115 NNELR---DTDSLIHLKNLEILSIRNNKLK-SIVMLGFLS----KLEVLDLHGNEITNTG 166

Query: 313 FRLPIHSHKSLRLLDVSNNN 332
               +   K +  +D++   
Sbjct: 167 ---GLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 97  QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLK 156
           +LE LS++ N +          +        L    L  N   +    SL  L ++  L 
Sbjct: 86  KLEELSVNRNRL---------KNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILS 134

Query: 157 LSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT 216
           +  N+L+    +      + LEVLD+  NEI N     G    K +  +D++        
Sbjct: 135 IRNNKLK---SIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188

Query: 217 NFLQIIGESMPSLKHLSLSNFSPSNDS 243
              Q       ++K       SP   S
Sbjct: 189 VKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 62/245 (25%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 463
                L   +++  +      L+G+Q+     ++++    ++F     L+ L +S N IS
Sbjct: 21  AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTN--LKELHLSHNQIS 76

Query: 464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL--LDLSDNNLHGL 521
                      +  +  L+ L  L +  N L+      L G+    L  L L +N L   
Sbjct: 77  ----------DLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRD- 120

Query: 522 IPPFFYNTALHE---SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ 578
                +   L       N   S+                                     
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIV-------MLGF------------------------- 148

Query: 579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638
              LS L  +DL  N+ I +    +  L ++  ++L+             +L     +  
Sbjct: 149 ---LSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203

Query: 639 SYNKL 643
              + 
Sbjct: 204 PDGRW 208

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 442 IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ 501
                   + L  L I +      L           + GL  L +L +  + L    P  
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-------RDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 502 LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLD 542
                +L  L+LS N L  L        +L E   + + L 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 15/160 (9%)

Query: 141 SILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFK 200
             L  L    ++  L +   +    +++++      L  L + ++ +   V P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP 80

Query: 201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN-QVLWLS----NN 255
            L  L++S+       N L+ +      ++ LSL     S +    +  + WL       
Sbjct: 81  RLSRLNLSF-------NALESLSWKT--VQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131

Query: 256 HFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAP 295
              +P           L      +  +     +  + +  
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVD 171

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 580 RVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL 638
                L+ + +   + + H+    +  L  ++ L +  + L    P  F        L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 639 SYNKL 643
           S+N L
Sbjct: 88  SFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 3/107 (2%)

Query: 589 DLSC-NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS-TFSKLEAYRNLDLSYNKLNGK 646
            L C           +     +  L + +      +       L   RNL +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 647 IPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC 693
            P            + + N L   +   T Q  +  E    GNP  C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 43/247 (17%)

Query: 401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN 460
           C   +   +   ++  +IP    +   L+   + + HL       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 461 NISGSLPS-CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNNL 518
                L S  F+         LS ++H+ + +      +    L  L  L+ L + +  L
Sbjct: 66  VTLQQLESHSFY--------NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 519 HGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ 578
             + P     T ++       S D  F +          +   +     F    N     
Sbjct: 118 K-MFPDL---TKVY-------STDIFFILEITDNPYMTSIPVNA-----FQGLCN----- 156

Query: 579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS-TFSKL-EAYRNL 636
                    + L  N     +     N T++  + L+ N     I    F  +      L
Sbjct: 157 -----ETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 637 DLSYNKL 643
           D+S   +
Sbjct: 211 DVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 36/247 (14%), Positives = 75/247 (30%), Gaps = 55/247 (22%)

Query: 404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 462
            + L L   +L         NL  +  I +  +     +    F  L  +  ++I +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP--VQLCGLNQLQLLDLSDNNLHG 520
              +         + +  L  L  L + +  L+   P   ++   +   +L+++DN    
Sbjct: 93  LTYIDP-------DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 521 LIPP--FFYNTALHE----SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
            IP   F              N  +S+       + F  T+                   
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQ-----GYAFNGTK------------------- 180

Query: 575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPI--GNLTRIQILNLSHNNLTGTIPS-TFSKLE 631
                     L  + L+ NK +  I      G  +   +L++S  ++T  +PS     L+
Sbjct: 181 ----------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLK 229

Query: 632 AYRNLDL 638
                + 
Sbjct: 230 ELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 42/208 (20%), Positives = 75/208 (36%), Gaps = 27/208 (12%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
           S + L +   + +  IP      LP++S   +S++     + S    H F    NL+ V 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLES----HSFY---NLSKVT 83

Query: 382 WLLLEENHFVGEIPQS-LSKCFLLKGLYLNNNNLSGKIPQ--WLGNLTGLQHIIMPKNHL 438
            + +     +  I    L +  LLK L + N  L    P    + +      + +  N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142

Query: 439 EGPIPVE-FCQL-DWLQILDISDNNISGSLPSC-FHLLSIEQINGLSGLSHLILAHNNLE 495
              IPV  F  L +    L + +N  + S+    F+            L  + L  N   
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK---------LDAVYLNKNKYL 192

Query: 496 GEVPVQ-LCGL-NQLQLLDLSDNNLHGL 521
             +      G+ +   LLD+S  ++  L
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 41/257 (15%), Positives = 75/257 (29%), Gaps = 56/257 (21%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILS-SLTRLSSVRSLK 156
            ++L L   ++          S   + L N+    +S +     + S S   LS V  ++
Sbjct: 33  TQTLKLIETHL------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 157 LSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT 216
           +   R    ID         L+ L +    +                 L+++      + 
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------DN 140

Query: 217 NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRL-KIF 275
            ++  I  +        L N             L L NN F   +     FN ++L  ++
Sbjct: 141 PYMTSIPVNAFQ----GLCN---------ETLTLKLYNNGFTS-VQGY-AFNGTKLDAVY 185

Query: 276 HAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQG 335
              N  +         +    F      + SG                 LLDVS  +   
Sbjct: 186 LNKNKYL-------TVIDKDAFG----GVYSG---------------PSLLDVSQTSVT- 218

Query: 336 CIPVEIGDILPSLSCFN 352
            +P +  + L  L   N
Sbjct: 219 ALPSKGLEHLKELIARN 235

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 99  ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLS 158
             L L+ N           ++    +L  L+  + S N   +    +    S V  + L+
Sbjct: 35  AELRLNNNEFT-----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 159 YNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMSYAHIALNTN 217
            NRLE ++  K F    +L+ L ++ N I  +      F    S+  L        L  N
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRITCV--GNDSFIGLSSVRLLS-------LYDN 139

Query: 218 FLQIIGE----SMPSLKHLSLSNFSPSNDSWTLN-QVLWLSN 254
            +  +      ++ SL  L+L      N  +  N  + WL  
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLA----N-PFNCNCYLAWLGE 176

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 407 LYLNNNNLSGKIPQ-WLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 465
           L LNNN  +          L  L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 466 LPS-CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521
           +    F         GL  L  L+L  N +         GL+ ++LL L DN +  +
Sbjct: 96  VQHKMFK--------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 65/498 (13%), Positives = 139/498 (27%), Gaps = 71/498 (14%)

Query: 54  CCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLS----ANNIA 109
           C +W  ++          + ++   +   +       L   F  L SL L     A    
Sbjct: 41  CRRWFKIDSETRE----HVTMALCYTATPD------RLSRRFPNLRSLKLKGKPRAAMFN 90

Query: 110 GCVENEGASSREVTR-----LNNLKMFDLSGNSFNNSILSSLTR--LSSVRSLKLSYNRL 162
              EN G             L  LK         ++  L  L +     + +LKL     
Sbjct: 91  LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150

Query: 163 EGSIDVKEF-DSFNNLEVLDMKRNEIDNLVVP---QGFPHFKSLEHLDMSYAHIA-LNTN 217
             +  +         ++ L M+ +           +   H  SLE L+      A ++  
Sbjct: 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210

Query: 218 FLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA 277
            L+ I  +  SL  + + +F                                + L+ F  
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELV--------------------GFFKAAANLEEFCG 250

Query: 278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCI 337
            +      + E +       +L  L LS   G     +       +R LD+     +   
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 338 PVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS 397
              +    P+L          D  +    +     K   +         E+       + 
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 398 L----SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGPIP------ 443
           L      C  L+ + +  ++++ +    I  +L NL   + +++ +      +P      
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429

Query: 444 --VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ 501
             +  C+   L+           +     ++           +  ++L +     E  ++
Sbjct: 430 SLLIGCKK--LRRFAFYLRQGGLTDLGLSYIGQ-----YSPNVRWMLLGYVGESDEGLME 482

Query: 502 LC-GLNQLQLLDLSDNNL 518
              G   LQ L++     
Sbjct: 483 FSRGCPNLQKLEMRGCCF 500

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSS 151
                +++ + LS       V         +++ + L+   L G   ++ I+++L + S+
Sbjct: 89  HFSPFRVQHMDLS-----NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143

Query: 152 VRSLKLSYNRLEGSIDVKE-FDSFNNLEVLDMKR-NEIDNLVVPQGFPHF-KSLEHLDMS 208
           +  L LS         ++    S + L+ L++    +     V     H  +++  L++S
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 209 YAHIALNTNFLQIIGESMPSLKHLSLSN 236
                L  + L  +    P+L HL LS+
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 39/181 (21%)

Query: 92  FTPFQQLESLSLSANNIAGCVENEGASSREV-TRLNNLKMFDLSGNSFNNSILSSL---- 146
           F    +L  L L+ N +             +   L NL+   ++ N      L +L    
Sbjct: 57  FHRLTKLRLLYLNDNKLQ-------TLPAGIFKELKNLETLWVTDNK-----LQALPIGV 104

Query: 147 -TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEH 204
             +L ++  L+L  N+L+ S+  + FDS   L  L +  NE+ +L  P+G F    SL+ 
Sbjct: 105 FDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLTSLKE 161

Query: 205 LDMSYAHIALNTNFLQIIGE----SMPSLKHLSLSNFSPSN------DSWTLNQVLWLSN 254
           L        L  N L+ + E     +  LK L L N           DS    ++L L  
Sbjct: 162 LR-------LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 255 N 255
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 27/200 (13%)

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
             + LD+ +N     +P +    L  L    ++ N L  ++P+     +F +   L N+ 
Sbjct: 38  DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAG----IFKE---LKNLE 88

Query: 382 WLLLEENHFV---GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWL-GNLTGLQHIIMPKNH 437
            L + +N        +   L     L  L L+ N L   +P  +  +LT L ++ +  N 
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 438 LEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
           L+  +P   F +L  L+ L + +N +   +P           + L+ L  L L +N L+ 
Sbjct: 145 LQS-LPKGVFDKLTSLKELRLYNNQLK-RVPE-------GAFDKLTELKTLKLDNNQLKR 195

Query: 497 EVPVQLCGLNQLQLLDLSDN 516
                   L +L++L L +N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 49/198 (24%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC-GLNQLQL 510
            + LD+  N +S      FH         L+ L  L L  N L+  +P  +   L  L+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFH--------RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLET 89

Query: 511 LDLSDNNLHGLIPPFFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIF 566
           L ++DN L  L    F        L    N   SL                       +F
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL--------------------PPRVF 129

Query: 567 EFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPS 625
           +  TK             L+ + L  N+L   +P  +   LT ++ L L +N L      
Sbjct: 130 DSLTK-------------LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 626 TFSKLEAYRNLDLSYNKL 643
            F KL   + L L  N+L
Sbjct: 176 AFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 55/242 (22%), Positives = 80/242 (33%), Gaps = 75/242 (30%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
           L L +N LS  +P                          F +L  L++L ++DN +  +L
Sbjct: 42  LDLQSNKLS-SLP-----------------------SKAFHRLTKLRLLYLNDNKLQ-TL 76

Query: 467 PS-CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL-CGLNQLQLLDLSDNNLHGLIPP 524
           P+  F          L  L  L +  N L+  +P+ +   L  L  L L  N L  L P 
Sbjct: 77  PAGIFK--------ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPR 127

Query: 525 FFYN----TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
            F +    T L   YN   SL                       +F              
Sbjct: 128 VFDSLTKLTYLSLGYNELQSL--------------------PKGVF-------------D 154

Query: 581 VLSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
            L+ L  + L  N+L   +P      LT ++ L L +N L       F  LE  + L L 
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 640 YN 641
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 17/178 (9%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWL-GNLTGLQHIIMPKN 436
            + + L L+ N       ++  +   L+ LYLN+N L   +P  +   L  L+ + +  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 437 HLEGPIPVE-FCQLDWLQILDISDNNISGSLPS-CFHLLSIEQINGLSGLSHLILAHNNL 494
            L+  +P+  F QL  L  L +  N +  SLP   F          L+ L++L L +N L
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD--------SLTKLTYLSLGYNEL 145

Query: 495 EGEVPVQLC-GLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFD 550
           +  +P  +   L  L+ L L +N L  +    F   T L     +N+ L +  E +FD
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 376 NLTNVRWLLLEENHFV---GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHII 432
            LT +R L L +N        I + L     L+ L++ +N L          L  L  + 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKN---LETLWVTDNKLQALPIGVFDQLVNLAELR 115

Query: 433 MPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPS-CFHLLSIEQINGLSGLSHLILA 490
           + +N L+  +P   F  L  L  L +  N +  SLP   F        + L+ L  L L 
Sbjct: 116 LDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF--------DKLTSLKELRLY 165

Query: 491 HNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN 528
           +N L+         L +L+ L L +N L  +    F +
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           ++  +LS     K L L+ NN+  KI   L  +  L+ + + +N ++  I       D L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTL 95

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLL 511
           + L IS N I+          S+  I  L  L  L +++N +     +  L  L++L+ L
Sbjct: 96  EELWISYNQIA----------SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145

Query: 512 DLSDN 516
            L+ N
Sbjct: 146 LLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 27/180 (15%)

Query: 61  ECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSR 120
               T    ++L+       +++         +  +  + L+LS NNI   + +      
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDA------TLSTLKACKHLALSTNNIE-KISS------ 65

Query: 121 EVTRLNNLKMFDLSGNSFNNSILSSLTRLS-SVRSLKLSYNRLEGSIDVKEFDSFNNLEV 179
            ++ + NL++  L  N      + +L  ++ ++  L +SYN++     +   +   NL V
Sbjct: 66  -LSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRV 119

Query: 180 LDMKRNEIDNLVVPQGFPHFKSLEHLDMS-------YAHIALNTNFLQIIGESMPSLKHL 232
           L M  N+I N            LE L ++       Y      + +   + + +P+LK L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH---LEGPIPVEFCQLDWLQILDISDNNIS 463
           L+     +  K+   L  L   +H+ +  N+   +          ++ L+IL +  N I 
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK 83

Query: 464 GSLPSCFHLLSIEQINGLSG-LSHLILAHNN---LEGEVPVQLCGLNQLQLLDLSDNNL 518
                      IE ++ ++  L  L +++N    L G     +  L  L++L +S+N +
Sbjct: 84  ----------KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 96  QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSL 155
           + L  LSL  N I      +          + L+   +S N   +  LS + +L ++R L
Sbjct: 70  ENLRILSLGRNLIKKIENLD-------AVADTLEELWISYNQIAS--LSGIEKLVNLRVL 120

Query: 156 KLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFP---------HFKSLEHLD 206
            +S N++    ++ +  + + LE L +  N + N                    +L+ LD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 468
           L    +  +  Q   N    + + +    +   I      LD    +D SDN I      
Sbjct: 4   LTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR----- 55

Query: 469 CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL 521
                 ++    L  L  L++ +N +          L  L  L L++N+L  L
Sbjct: 56  -----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 71  QLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKM 130
           +L L   +   +E       L     Q +++  S N I   ++           L  LK 
Sbjct: 23  ELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIR-KLDG-------FPLLRRLKT 68

Query: 131 FDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL 190
             ++ N            L  +  L L+ N L    D+    S  +L  L + RN + N 
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
           N    R L L     +  I    +       +  ++N +  K+      L  L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN 492
           N +          L  L  L +++N++         L  ++ +  L  L++L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV-------ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 28/153 (18%)

Query: 130 MFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDN 189
           M  L+      +  +  T     R L L   ++    ++    + +  + +D   NEI  
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEIRK 56

Query: 190 LVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQV 249
           L    GFP  + L+ L ++   I       + + +++P L                    
Sbjct: 57  L---DGFPLLRRLKTLLVNNNRI---CRIGEGLDQALPDL------------------TE 92

Query: 250 LWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI 282
           L L+NN        DPL +   L       N +
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 16/124 (12%)

Query: 407 LYLNNNNLSGKIPQW-LGNLTGLQHIIMPKNHLEGPIPVE-FCQLDWLQILDISDNNISG 464
           + L  N +   IP         L+ I +  N +   +  + F  L  L  L +  N I+ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 465 SLPS-CFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL-CGLNQLQLLDLSDNNLHGLI 522
            LP   F         GL  L  L+L  N +   + V     L+ L LL L DN L  + 
Sbjct: 94  ELPKSLFE--------GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 523 PPFF 526
              F
Sbjct: 145 KGTF 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 29/142 (20%)

Query: 72  LYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNI----AGCVENEGASSREVTRLNN 127
           + L       +         F+P+++L  + LS N I        +           L +
Sbjct: 37  IRLEQNTIKVIPPGA-----FSPYKKLRRIDLSNNQISELAPDAFQ----------GLRS 81

Query: 128 LKMFDLSGN---SFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
           L    L GN       S+   L  L   + L L+ N++   + V  F   +NL +L +  
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSL---QLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 185 NEIDNLVVPQG-FPHFKSLEHL 205
           N++    + +G F   ++++ +
Sbjct: 138 NKLQT--IAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMS 208
            ++  ++L  N ++  I    F  +  L  +D+  N+I  L      F   +SL  L   
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLV-- 86

Query: 209 YAHIALNTNFLQIIG----ESMPSLKHLSLSN----------FSPSNDSWTLNQVLWLSN 254
                L  N +  +     E + SL+ L L+           F           +L L +
Sbjct: 87  -----LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF----QDLHNLNLLSLYD 137

Query: 255 NHFRIPISPDPLFNHSRLKIFHAYNN 280
           N  +  I+         ++  H   N
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNL 377
             +K LR +D+SNN     +  +    L SL+   +  N +     +     +F     L
Sbjct: 53  SPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKI-----TELPKSLFEG---L 103

Query: 378 TNVRWLLLEENHFVGEIP----QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHI 431
            +++ LLL  N  +  +     Q L     L  L L +N L          L  +Q +
Sbjct: 104 FSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 10/140 (7%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
             +  + LE+N      P + S    L+ + L+NN +S   P     L  L  +++  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 438 LEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
           +   +P   F  L  LQ+L ++ N I+  L         +    L  L+ L L  N L+ 
Sbjct: 92  ITE-LPKSLFEGLFSLQLLLLNANKIN-CLRV-------DAFQDLHNLNLLSLYDNKLQT 142

Query: 497 EVPVQLCGLNQLQLLDLSDN 516
                   L  +Q + L+ N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN----TALHESYNNNSSLD 542
           + L  N ++   P       +L+ +DLS+N +  L P  F       +L    N  + L 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 543 KPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP 602
                   F                              L  L  + L+ NK+   +   
Sbjct: 97  -----KSLFEG----------------------------LFSLQLLLLNANKI-NCLRVD 122

Query: 603 I-GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN 641
              +L  + +L+L  N L      TFS L A + + L+ N
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 582 LSLLSGIDLSCNKLIGHIPPPI-GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
           L  L+ + L  NK+   +P  +   L  +Q+L L+ N +       F  L     L L  
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 641 NKL 643
           NKL
Sbjct: 138 NKL 140

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 50/329 (15%), Positives = 102/329 (31%), Gaps = 67/329 (20%)

Query: 132 DLSGNSFNN----SILSSLTRLSSVRSLKLSYNRL--EGSIDVKEFDSFN-NLEVLDMKR 184
            L  ++       S+ + L    SV+ + LS N +  E +  + E  +   +LE+ +   
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 185 NEIDNLV--VPQGFPHF-------KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS 235
                +   +P+              L  + +S           + + + +     L   
Sbjct: 70  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--QEPLIDFLSKHTPL--- 124

Query: 236 NFSPSNDSWTLNQVLWLSNNHF------------RIPISPDPLFNHSRLKIFHAYNNEIH 283
                       + L+L NN              +         N   L+      N + 
Sbjct: 125 ------------EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 284 AEITE--SHSLTAPTFQLKSLSLSS-GYGD----GPFRLPIHSHKSLRLLDVSNNNF--Q 334
               +  + +  +    L ++ +   G             +   + L++LD+ +N F   
Sbjct: 173 NGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 335 GCIPVEIGDIL---PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHF- 390
           G     +   L   P+L    ++   L  +  ++     FSK  N+   + L L+ N   
Sbjct: 232 GS--SALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGL-QTLRLQYNEIE 287

Query: 391 ---VGEIPQSL-SKCFLLKGLYLNNNNLS 415
              V  +   +  K   L  L LN N  S
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 46/239 (19%), Positives = 70/239 (29%), Gaps = 45/239 (18%)

Query: 316 PIHSHKSLRLLDVSNNNF--QGCIPVEIGDIL---PSLSCFNISMNALDGSIPSSFEG-- 368
            +    S++ + +S N    +      + + +     L     S            E   
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAAR--WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84

Query: 369 ---HMFSKNFNLTNVRWLLLEENHF----VGEIPQSLSKCFLLKGLYLNNNNLS------ 415
                  K   L     + L +N F       +   LSK   L+ LYL+NN L       
Sbjct: 85  LLLQALLKCPKLHT---VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141

Query: 416 -------GKIPQWLGNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDISDNNISG 464
                    + +   N   L+ II  +N LE          F     L  + +  N I  
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 465 SLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-----LCGLNQLQLLDLSDNNL 518
                 HLL  E +     L  L L  N     +        L     L+ L L+D  L
Sbjct: 202 --EGIEHLLL-EGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 56/394 (14%), Positives = 113/394 (28%), Gaps = 109/394 (27%)

Query: 151 SVRSLKLSYNRLEGSIDVKEF----DSFNNLEVLDMKRNEIDN---LVVPQGFPHFKSLE 203
           S+    L  + +  + D K         ++++ + +  N I       + +     K LE
Sbjct: 5   SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 204 HLDMSYAHI----ALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFR- 258
             + S              L+++ +++     L                 + LS+N F  
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL---------------HTVRLSDNAFGP 108

Query: 259 ---IPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRL 315
               P+  D L  H+ L+  + +NN +  +                  ++    +     
Sbjct: 109 TAQEPLI-DFLSKHTPLEHLYLHNNGLGPQAGAK--------------IARALQELAVNK 153

Query: 316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNF 375
              +   LR +    N         + +          SM               F  + 
Sbjct: 154 KAKNAPPLRSIICGRNR--------LENG---------SMKEW---------AKTFQSHR 187

Query: 376 NLTNVRWLLLEENHF-----VGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN-LTGLQ 429
            L  V+   + +N          + + L+ C  LK L L +N  +      L   L    
Sbjct: 188 LLHTVK---MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 430 HIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL 489
           +                     L+ L ++D  +S        ++         GL  L L
Sbjct: 245 N---------------------LRELGLNDCLLSAR--GAAAVVDAFSKLENIGLQTLRL 281

Query: 490 AHNNLEGEVPVQLC-----GLNQLQLLDLSDNNL 518
            +N +E +    L       +  L  L+L+ N  
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 20/164 (12%)

Query: 96  QQLESLSLSANNIAGCVENEGASS--REVTRLN-NLKMFDLSGNSFNN----SILSSLTR 148
           + L ++ +  N I      EG      E       LK+ DL  N+F +    ++  +L  
Sbjct: 187 RLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 149 LSSVRSLKLSYNRL--EGSIDVKE---FDSFNNLEVLDMKRNEIDN---LVVPQGFP-HF 199
             ++R L L+   L   G+  V +         L+ L ++ NEI+      +        
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 200 KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDS 243
             L  L+++    +   + +  I E   +     L       + 
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 99  ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN---SFNNSILSSLTRLSSVRSL 155
             L L  N             +E++   +L + DLS N   + +N   S++T+L +   L
Sbjct: 34  TELYLDGNQFT-------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT---L 83

Query: 156 KLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMSYAHIAL 214
            LSYNRL   I  + FD   +L +L +  N+I    VP+G F    +L        H+A+
Sbjct: 84  ILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALS-------HLAI 133

Query: 215 NTN 217
             N
Sbjct: 134 GAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 94  PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL------T 147
           P   L+SL + +  +      E     ++  L  L ++    +   +  ++         
Sbjct: 191 PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 148 RLSSVRSLKLSYNRL--EGSIDVKEFDSFNNLEVLDMKRNEIDN---LVVPQGFPHFKSL 202
           R  +++ L +              E D    LE +D+    + +    ++       K L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 203 EHLDMSYAHIALNTNFLQIIGESMPSLKHLS 233
           + ++M   +  L+    + + +S+P    +S
Sbjct: 310 KFINMK--YNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 32/320 (10%), Positives = 89/320 (27%), Gaps = 33/320 (10%)

Query: 154 SLKLSYNRL--EGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH 211
            + ++Y +L  +G   VK F S    E    K                 + E    +  +
Sbjct: 24  DVIVNYGKLGTDGQTQVKNFSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKY 83

Query: 212 IALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR 271
                   + +      LK   L +                 +         +     + 
Sbjct: 84  ALSYDEAEEGVNLMDKILKDKKLPSL---KQITIGXWGYEGEDCSDIADGIVENKEKFAH 140

Query: 272 LKIFHAYNNEIHAEITESHSLTAPTFQLKS---LSLSSGYGDGPFRLPIHSHKSLRLLDV 328
            +     + +   +          +  L +   L+     G     +      +L+ L++
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 329 SNNNFQGCIPVEIGD-ILPSLSCFNISMNALDGSIPSSFEG-HMFSKNFNLTNVRWLLLE 386
            +      +  +I    LP+L    + +   D                    N++WL + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 387 ENHFVGEIPQSLSKCFL---LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP 443
           +      + +   +  +   L+ + ++   L+ +         G + ++   + ++    
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDE---------GARLLLDHVDKIKH--- 308

Query: 444 VEFCQLDWLQILDISDNNIS 463
                   L+ +++  N +S
Sbjct: 309 --------LKFINMKYNYLS 320

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 86  YLNAYLFTPFQQLESLSLSANNIAGCVENEGAS--SREVTRLN-NLKMFDLSGNSFNNSI 142
                       + SL+L  N++      + +    + +  +  N+   +L GN+  +  
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDL----GIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 143 LSSLTRL-----SSVRSLKLSYNRL--EGSIDVKEFDSFNN--LEVLDMKRNEIDNLVVP 193
            + L +      +SV SL LS N L  +   ++    S     +  L++  N +    + 
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 194 ---QGFPHFKSLEHLDMSYAHI-ALNTNFLQIIGESMPSLKHLSLSNFS 238
                    K L+ + + Y  +  ++    + +G + P+++ + L + +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 37/175 (21%)

Query: 99  ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL-----TRLSSVR 153
           E L L +  +A        S      L  L   +L  N      L +L       L+ + 
Sbjct: 38  EKLDLQSTGLATL------SDATFRGLTKLTWLNLDYNQ-----LQTLSAGVFDDLTELG 86

Query: 154 SLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG-FPHFKSLEHLDMSYAHI 212
           +L L+ N+L  S+ +  FD    L+ L +  N++ +L  P G F     L+ L       
Sbjct: 87  TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL--PSGVFDRLTKLKELR------ 137

Query: 213 ALNTNFLQIIGE----SMPSLKHLSLSNFSPSN------DSWTLNQVLWLSNNHF 257
            LNTN LQ I       + +L+ LSLS     +      D     Q + L  N F
Sbjct: 138 -LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	782
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.2e-82  Score=748.58  Aligned_cols=653  Identities=29%  Similarity=0.400  Sum_probs=477.0

Q ss_pred             CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCcccceEecCCCCCEEEEEcCCCCCccc----cc--------
Q 044724           17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQWANVECNNTTGRVIQLYLSNTRSMEL----EE--------   84 (782)
Q Consensus        17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~----~~--------   84 (782)
                      ++.+.++||+|||+||+++.||. .+++|..   ++|||+|+||+|+  +|||++|+|++..+...    .+        
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            45668999999999999999988 8999975   6799999999998  79999999998876321    00        


Q ss_pred             ---------cccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc-CCCCCCCE
Q 044724           85 ---------WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL-TRLSSVRS  154 (782)
Q Consensus        85 ---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~  154 (782)
                               +...+..|..+++|++|||++|.++|.+|..    ..++++++|++|+|++|.+++.+|..+ .++++|++
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL----TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG----GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh----HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                     0000135778888888888888888766641    015556666666666665555444443 44555555


Q ss_pred             EEccCCcCcCcCChh------------------------hhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccC
Q 044724          155 LKLSYNRLEGSIDVK------------------------EFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYA  210 (782)
Q Consensus       155 L~Ls~n~l~~~ip~~------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n  210 (782)
                      |++++|.+++..|..                        .+..+++|++|++++|.+++.. |. ++++++|++|++++ 
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls~-  232 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDISG-  232 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECCS-
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCC-cc-cccCCCCCEEECcC-
Confidence            555555554332221                        1256677777777777777653 44 78888888888888 


Q ss_pred             cccccccchHHHhhcCCCCCeEeCCC-----CCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcccee
Q 044724          211 HIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAE  285 (782)
Q Consensus       211 ~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  285 (782)
                       +.+.+.+|..+.. +++|++|++++     .+|.. .+++|++|++++|.+++.+|......+++|++|++++|.+.+.
T Consensus       233 -n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          233 -NKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             -SCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             -CcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence             6677778888877 88888888877     23333 7788888888888888887776444458888888888888776


Q ss_pred             ccccccCCCCCCCccEEEccCCCCCCCCccC-CCCCCCCcEEEccCCcCCccCChhhhhcCC-CCcEEEcccCcCcccCC
Q 044724          286 ITESHSLTAPTFQLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDVSNNNFQGCIPVEIGDILP-SLSCFNISMNALDGSIP  363 (782)
Q Consensus       286 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p  363 (782)
                      .+..   +....+|++|++++|.+.+.++.. +..+++|++|++++|++++.+|..+.. ++ +|++|++++|.+++.+|
T Consensus       310 ~p~~---~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~~L~~L~Ls~N~l~~~~~  385 (768)
T 3rgz_A          310 VPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPIL  385 (768)
T ss_dssp             CCGG---GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH-HTTTCSEEECCSSEEEEECC
T ss_pred             cchH---HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh-hhcCCcEEEccCCCcCCCcC
Confidence            5433   345567888888888887666654 778888888888888888888888776 44 78888888888777666


Q ss_pred             Cccc------------------ccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724          364 SSFE------------------GHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL  425 (782)
Q Consensus       364 ~~~~------------------g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  425 (782)
                      ..+.                  +.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+
T Consensus       386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  465 (768)
T 3rgz_A          386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV  465 (768)
T ss_dssp             TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            5543                  2344455567777777777777777777777777777777777777777777777777


Q ss_pred             CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724          426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL  505 (782)
Q Consensus       426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  505 (782)
                      ++|++|++++|++++.+|..+.++++|++|++++|++++.+|        .+++.+++|++|++++|++++.+|..+..+
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            788888888888877777778788888888888888877777        567788888888888888888888888888


Q ss_pred             CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccc--------------ccccc---cc-cc-----cccc
Q 044724          506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISF--------------DFRNT---EK-KV-----EKKS  562 (782)
Q Consensus       506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~-~~-----~~~~  562 (782)
                      ++|++|++++|+++|.+|..+................ ..++..              .+...   .. ..     ....
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE-EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhcccccc-ccccccccccccccccccccccccccchhhhccccccccccc
Confidence            8888888888888888888776533111110000000 000000              00000   00 00     0000


Q ss_pred             ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724          563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK  642 (782)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  642 (782)
                      ...+....     ......+++|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++||||+|+
T Consensus       617 ~~~~~g~~-----~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          617 SRVYGGHT-----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             SCEEEEEC-----CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             cceecccC-----chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence            00000000     0011226789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCCCCCCCCC
Q 044724          643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPICRSPA  704 (782)
Q Consensus       643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~C~~~~  704 (782)
                      ++|.+|..+.++++|++||+++|+++|.||. .+++.++...+|.|||++||.|+..|....
T Consensus       692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             CEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             ccCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            9999999999999999999999999999999 799999999999999999999988897554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-62  Score=584.29  Aligned_cols=572  Identities=27%  Similarity=0.364  Sum_probs=401.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchh--hcCCCCCCCEEEccCCcCcCcCCh
Q 044724           91 LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILS--SLTRLSSVRSLKLSYNRLEGSIDV  168 (782)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~ip~  168 (782)
                      .+.++++|+.++++.+.+.. .+.      .++++++|++|||++|.+++.+|.  .++++++|++|+|++|.+.+.+|.
T Consensus        72 ~l~~L~~L~~l~~~~~~~~~-l~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  144 (768)
T 3rgz_A           72 SLLSLTGLESLFLSNSHING-SVS------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV  144 (768)
T ss_dssp             HTTTCTTCCEEECTTSCEEE-CCC------CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred             hHhccCcccccCCcCCCcCC-Cch------hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence            46778888888888887643 222      289999999999999999998888  999999999999999999988887


Q ss_pred             hhhcCCCCCCEEEcccCCCCCccCCCC---CCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-----CCCC
Q 044724          169 KEFDSFNNLEVLDMKRNEIDNLVVPQG---FPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPS  240 (782)
Q Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~---l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-----~ip~  240 (782)
                      ..+.++++|++|++++|++++.. |..   +.++++|++|++++  +.+.+..+.  .. +++|++|++++     .+|.
T Consensus       145 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~--~~-l~~L~~L~Ls~n~l~~~~~~  218 (768)
T 3rgz_A          145 SGGLKLNSLEVLDLSANSISGAN-VVGWVLSDGCGELKHLAISG--NKISGDVDV--SR-CVNLEFLDVSSNNFSTGIPF  218 (768)
T ss_dssp             CSCCCCTTCSEEECCSSCCEEET-HHHHHHTTCCTTCCEEECCS--SEEESCCBC--TT-CTTCCEEECCSSCCCSCCCB
T ss_pred             HHhccCCCCCEEECCCCccCCcC-ChhhhhhccCCCCCEEECCC--CcccccCCc--cc-CCcCCEEECcCCcCCCCCcc
Confidence            44589999999999999998764 443   56666666666666  333333332  22 45555555544     1222


Q ss_pred             ------------------------CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCC
Q 044724          241 ------------------------NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPT  296 (782)
Q Consensus       241 ------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  296 (782)
                                              +..+++|++|++++|.+++.+|..   .+++|++|++++|.+.+.++...  ....
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~--~~~~  293 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL--SGAC  293 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS--CTTC
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH--Hhhc
Confidence                                    444455555555555554444331   45555555555555554433221  1113


Q ss_pred             CCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccc--------
Q 044724          297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEG--------  368 (782)
Q Consensus       297 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g--------  368 (782)
                      .+|++|++++|.+.+..|..++.+++|++|++++|.++|.+|......+++|++|++++|.+++.+|..+..        
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence            577888888887777777778888888888888888887888763333788888888888888777766532        


Q ss_pred             ---------cccccCCC--CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCc
Q 044724          369 ---------HMFSKNFN--LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH  437 (782)
Q Consensus       369 ---------~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  437 (782)
                               .++..+..  +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~  453 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM  453 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence                     22333333  5567777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCc
Q 044724          438 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       438 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      +++.+|..+..+++|++|++++|++++.+|        ..++.+++|++|++++|++++.+|.++..+++|++|++++|+
T Consensus       454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          454 LEGEIPQELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccCcCCHHHcCCCCceEEEecCCcccCcCC--------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence            777777777777777777777777777777        556677777888888887777777777777788888888888


Q ss_pred             CCCcCCccccccccccc----ccCCCCCCCCccccccccc-c-ccccccccccEEEEEecCCe----------eeecc--
Q 044724          518 LHGLIPPFFYNTALHES----YNNNSSLDKPFEISFDFRN-T-EKKVEKKSHEIFEFTTKSNA----------YTYQG--  579 (782)
Q Consensus       518 l~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~----------~~~~~--  579 (782)
                      +++.+|..+..++....    .+...+     .++..+.. . ...........+........          ..+.+  
T Consensus       526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g-----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          526 FSGNIPAELGDCRSLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEES-----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             ccCcCCHHHcCCCCCCEEECCCCccCC-----cCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            77777777766442111    111100     01110000 0 00000111111211111000          00111  


Q ss_pred             ----hhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724          580 ----RVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN  655 (782)
Q Consensus       580 ----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  655 (782)
                          ..++.+..++++.|.++|.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|||++|+++|.+|..+++++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                1245566778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724          656 AFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       656 ~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      +|++|||++|+++|.+|..+..+..++.+++++|+...
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            99999999999999999989999999999999998543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.7e-58  Score=538.75  Aligned_cols=575  Identities=20%  Similarity=0.179  Sum_probs=374.5

Q ss_pred             CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhh
Q 044724           66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS  145 (782)
Q Consensus        66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  145 (782)
                      ..+++.|+++++.+..     +.+..|.++++|++|+|++|.+++..|.      +|+++++|++|+|++|.+++..+..
T Consensus        24 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~l~~~~   92 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPE------LCQKLPMLKVLNLQHNELSQLSDKT   92 (680)
T ss_dssp             CTTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTT------HHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHH------HHhcccCcCEEECCCCccCccChhh
Confidence            3579999999988753     3345688999999999999999877665      3889999999999999999776678


Q ss_pred             cCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhh-
Q 044724          146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGE-  224 (782)
Q Consensus       146 ~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~-  224 (782)
                      |+++++|++|++++|.++ .+++..|+++++|++|++++|.+++.. |..+.++++|++|++++  |.+.+..+..+.. 
T Consensus        93 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSN--NKIQALKSEELDIF  168 (680)
T ss_dssp             TTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCS--SCCCCBCHHHHGGG
T ss_pred             hccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccC--CcccccCHHHhhcc
Confidence            999999999999999998 666658999999999999999998875 78899999999999999  6667766666542 


Q ss_pred             cCCCCCeEeCCCC-----CCC-CCCCCCCCeEEccCceeeeecCCCC--cCCCCCCcEEEccCCccceeccccccCCCCC
Q 044724          225 SMPSLKHLSLSNF-----SPS-NDSWTLNQVLWLSNNHFRIPISPDP--LFNHSRLKIFHAYNNEIHAEITESHSLTAPT  296 (782)
Q Consensus       225 ~l~~L~~L~L~~~-----ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  296 (782)
                      .+++|++|+++++     .|. +..+++|+.++++++.+.+......  ....++|+.|++++|.+.+..+.... ....
T Consensus       169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~  247 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKW  247 (680)
T ss_dssp             TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGG
T ss_pred             ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCc
Confidence            2689999999872     232 5556666666655554432110000  00224556666666655554332210 0111


Q ss_pred             CCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCc-ccccccccCC
Q 044724          297 FQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS-FEGHMFSKNF  375 (782)
Q Consensus       297 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~g~~~~~~~  375 (782)
                      .+|++|++++|.+.+..+..+..+++|++|++++|++++..|..+.. +++|+.|++++|...+.++.. +...-...+.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~  326 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ  326 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred             CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhcccccccccccChhhcc
Confidence            23666666666655555555555666666666666665544444443 556666666555433221100 0000000122


Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccccc--CCccccCc--CCCCEEeCCCCccccCCChhccCCCC
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK--IPQWLGNL--TGLQHIIMPKNHLEGPIPVEFCQLDW  451 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~  451 (782)
                      .+++|++|++++|.+++..+..|..+++|++|++++|.+...  .+..|..+  ++|+.|++++|++++..|..|..+++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            455566666666666555555555556666666655543211  11222222  35555555555555555555555555


Q ss_pred             CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC--CcCCcccccc
Q 044724          452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH--GLIPPFFYNT  529 (782)
Q Consensus       452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~~  529 (782)
                      |++|++++|++++.+|.       ..+.++++|++|++++|++++..+..|..+++|+.|++++|.++  +.+|..+..+
T Consensus       407 L~~L~L~~N~l~~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTG-------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             CCEEECCSSCCEEECCS-------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             CCEEeCCCCcCccccCc-------ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            55555555555554443       23455555555555555555555555555555555555555554  3344444332


Q ss_pred             ccccc----ccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC-----
Q 044724          530 ALHES----YNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP-----  600 (782)
Q Consensus       530 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-----  600 (782)
                      +....    .+......                                 ......+++|+.|++++|++++..+     
T Consensus       480 ~~L~~L~Ls~N~l~~i~---------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  526 (680)
T 1ziw_A          480 RNLTILDLSNNNIANIN---------------------------------DDMLEGLEKLEILDLQHNNLARLWKHANPG  526 (680)
T ss_dssp             TTCCEEECCSSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred             CCCCEEECCCCCCCcCC---------------------------------hhhhccccccCEEeCCCCCccccchhhccC
Confidence            21000    00000000                                 0000126689999999999986422     


Q ss_pred             ---cccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcc-
Q 044724          601 ---PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA-  676 (782)
Q Consensus       601 ---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~-  676 (782)
                         ..|+++++|++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++..|..+. 
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  606 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP  606 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred             CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc
Confidence               3488999999999999999966566799999999999999999987777889999999999999999998887665 


Q ss_pred             ccCCCCcccccCCCCCCCCCC
Q 044724          677 QFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       677 ~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      .+++++.+++.||||.|+|+.
T Consensus       607 ~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          607 AFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccCEEEccCCCcccCCcc
Confidence            789999999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-57  Score=542.78  Aligned_cols=528  Identities=22%  Similarity=0.215  Sum_probs=409.1

Q ss_pred             CcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCC
Q 044724           55 CQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLS  134 (782)
Q Consensus        55 C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls  134 (782)
                      |.|..|.+  ...+++.|||+++.+..     +.+..|.++++|++|||++|...+.+++.     +|.++++|++|+|+
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-----~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKE-----AFRNLPNLRILDLG   81 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTT-----TTSSCTTCCEEECT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHH-----HhcCCCCCCEEECC
Confidence            56777776  45678899998887743     33456888999999999998766555332     38889999999999


Q ss_pred             CCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh-hhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc
Q 044724          135 GNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV-KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA  213 (782)
Q Consensus       135 ~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~  213 (782)
                      +|.+++..|..|+++++|++|+|++|.+++.+|. ..|.++++|++|+|++|.+++..++..|+++++|++|++++  |.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~--N~  159 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS--NQ  159 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES--SC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC--Cc
Confidence            9999888888999999999999999998865654 23888999999999999988876446788999999999998  66


Q ss_pred             ccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCC------CcEEEccCCccceecc
Q 044724          214 LNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSR------LKIFHAYNNEIHAEIT  287 (782)
Q Consensus       214 ~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~  287 (782)
                      +.+..+..+.. +.                .++|+.|+++.|.+.+..+.. +..+++      |+.|++++|.+.+..+
T Consensus       160 i~~~~~~~l~~-l~----------------~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  221 (844)
T 3j0a_A          160 IFLVCEHELEP-LQ----------------GKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDIT  221 (844)
T ss_dssp             CCCCCSGGGHH-HH----------------HCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred             CCeeCHHHccc-cc----------------CCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHH
Confidence            66666666554 30                034445555555555444332 333333      6666666665554433


Q ss_pred             ccccCCCCCCCccEEEccC---------CCCCCCCccCCCC--CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccC
Q 044724          288 ESHSLTAPTFQLKSLSLSS---------GYGDGPFRLPIHS--HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMN  356 (782)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  356 (782)
                      ..........+++.+.++.         +.+.+.....+..  .++|+.|++++|.+.+..|..+.. +++|+.|++++|
T Consensus       222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n  300 (844)
T 3j0a_A          222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYN  300 (844)
T ss_dssp             SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESC
T ss_pred             HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCC
Confidence            2221122334555555542         2222222333443  378999999999999666666655 899999999999


Q ss_pred             cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCC
Q 044724          357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN  436 (782)
Q Consensus       357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  436 (782)
                      .+++..|..|.        .+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus       301 ~i~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          301 KINKIADEAFY--------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CCCEECTTTTT--------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             cCCCCChHHhc--------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence            99988888777        7899999999999999888999999999999999999999888888999999999999999


Q ss_pred             ccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeec-CccccCCCCCCEEEccC
Q 044724          437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEV-PVQLCGLNQLQLLDLSD  515 (782)
Q Consensus       437 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~  515 (782)
                      .+++..     .+++|+.|++++|+++ .+|.           ...+++.|++++|++++.. +..+..+++|+.|+|++
T Consensus       373 ~l~~i~-----~~~~L~~L~l~~N~l~-~l~~-----------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  435 (844)
T 3j0a_A          373 ALTTIH-----FIPSIPDIFLSGNKLV-TLPK-----------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ  435 (844)
T ss_dssp             CSCCCS-----SCCSCSEEEEESCCCC-CCCC-----------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred             CCCccc-----CCCCcchhccCCCCcc-cccc-----------cccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence            998532     3789999999999998 5562           2468999999999998643 23456899999999999


Q ss_pred             CcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCcc
Q 044724          516 NNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL  595 (782)
Q Consensus       516 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  595 (782)
                      |++++..+.....                                                    .+++|+.|++++|.+
T Consensus       436 N~l~~~~~~~~~~----------------------------------------------------~~~~L~~L~Ls~N~l  463 (844)
T 3j0a_A          436 NRFSSCSGDQTPS----------------------------------------------------ENPSLEQLFLGENML  463 (844)
T ss_dssp             CCCCCCCSSSSSC----------------------------------------------------SCTTCCBCEEESCCC
T ss_pred             Ccccccccccccc----------------------------------------------------cCCccccccCCCCcc
Confidence            9998654432110                                                    145799999999999


Q ss_pred             C-----ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCccc
Q 044724          596 I-----GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       596 ~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      +     +..|..|.++++|++|+|++|++++.+|..|.++++|+.|+|++|+|++..|..+.  ++|++|++++|++++.
T Consensus       464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence            7     45567799999999999999999999999999999999999999999988777766  8999999999999999


Q ss_pred             CCCCccccCCCCcccccCCCCCCCCCC
Q 044724          671 IPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       671 ~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      +|..   +.++..+++.|||+.|+|++
T Consensus       542 ~~~~---~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          542 NPDV---FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CSCC---CSSCCEEEEEEECCCCSSSC
T ss_pred             ChhH---hCCcCEEEecCCCccccccc
Confidence            9984   45788999999999998864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.6e-56  Score=513.20  Aligned_cols=499  Identities=20%  Similarity=0.215  Sum_probs=358.5

Q ss_pred             cccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724           91 LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE  170 (782)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~  170 (782)
                      .|.++++|++|+|++|++++..|..      |+++++|++|+|++|.+++..|..|+++++|++|++++|.++ .+++..
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~  124 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDT------FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIP  124 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTT------TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSC
T ss_pred             HhccCccceEEECCCCccceeChhh------ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcch
Confidence            3444555555555555544433332      444555555555555554444444555555555555555544 232224


Q ss_pred             hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCC--
Q 044724          171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQ--  248 (782)
Q Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~--  248 (782)
                      ++++++|++|++++|.+++...| .+..+++|++|++++  |.+.+..+..+.                   .+++|+  
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~--n~l~~~~~~~~~-------------------~l~~L~~l  182 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQN--NAIHYLSKEDMS-------------------SLQQATNL  182 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCS--SCCCEECHHHHH-------------------TTTTCCSE
T ss_pred             hccCCcccEEECCCCcccccCcc-cccCCcccCEEEccc--CcccccChhhhh-------------------hhccccee
Confidence            44455555555555554443212 222245555555554  333333333333                   345555  


Q ss_pred             eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCC---CCCCccCCCCCC--CC
Q 044724          249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYG---DGPFRLPIHSHK--SL  323 (782)
Q Consensus       249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~~--~L  323 (782)
                      .|++++|.+++..+ ..+ ...+|+.|++++|.......  .  ......++.+.+.....   ....+..+..+.  +|
T Consensus       183 ~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~--~--~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          183 SLNLNGNDIAGIEP-GAF-DSAVFQSLNFGGTQNLLVIF--K--GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             EEECTTCCCCEECT-TTT-TTCEEEEEECTTCSCHHHHH--H--HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             EEecCCCccCccCh-hHh-hhccccccccCCchhHHHHh--h--hccccchhheechhhccccccccChhHhchhhcCce
Confidence            67788888876544 333 44678888888875211100  0  01111233333322111   111112222222  78


Q ss_pred             cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724          324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL  403 (782)
Q Consensus       324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  403 (782)
                      +.|++++|.+++..+..+.. +++|++|++++|.++ .+|..+.        .+++|++|++++|.+++..|..+..+++
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~lp~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPSGLV--------GLSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-CCCSSCC--------SCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             eEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-CCChhhc--------ccccCCEEECccCCcCcCchhhhhccCc
Confidence            99999999998544444554 899999999999998 5666665        7899999999999999888889999999


Q ss_pred             CcEEECcCCcccccCCc-cccCcCCCCEEeCCCCccccCC--ChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          404 LKGLYLNNNNLSGKIPQ-WLGNLTGLQHIIMPKNHLEGPI--PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       404 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      |++|++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+..+++|++|++++|++++..|        ..+..
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~  398 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--------EAFKE  398 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--------TTTTT
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--------HHhcC
Confidence            99999999999876665 4889999999999999998776  7889999999999999999998888        56788


Q ss_pred             CCCCCEEEcCCCcceeecCcc-ccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      +++|++|++++|++++..+.. +..+++|++|++++|.+++..|..+..                               
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------  447 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------------------------------  447 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-------------------------------
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-------------------------------
Confidence            999999999999999776654 889999999999999999887776644                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCcc---CCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH---IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL  636 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  636 (782)
                                            +++|+.|++++|++++.   .+..+..+++|++|+|++|++++.+|..|+++++|+.|
T Consensus       448 ----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          448 ----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             ----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence                                  55799999999999872   34679999999999999999999999999999999999


Q ss_pred             ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ||++|++++.+|..+.+++.| +|++++|++++.+|..+..+++++.+++.|||+.|+|+
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999 99999999999999878889999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-54  Score=505.38  Aligned_cols=540  Identities=23%  Similarity=0.226  Sum_probs=442.5

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN  175 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  175 (782)
                      +++++|+|++|.+++..+.      .|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|...|++++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA------NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG------GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             CCCcEEECCCCCCCCcCHH------HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCC
Confidence            6899999999999876554      3899999999999999999999999999999999999999998 78876799999


Q ss_pred             CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCC----CCC----CCCCCCC
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNF----SPS----NDSWTLN  247 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~----ip~----~~~l~~L  247 (782)
                      +|++|++++|++++.. |..|+++++|++|++++  +.+.+..+..+.. +++|++|+++++    ++.    ...+++|
T Consensus        98 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSH--NGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCS--SCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             CCCEEECCCCccCccC-hhHccccCCCCEEECCC--CcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccc
Confidence            9999999999998875 78899999999999999  6677777777777 999999999882    222    2356899


Q ss_pred             CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCC--CcE
Q 044724          248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKS--LRL  325 (782)
Q Consensus       248 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~  325 (782)
                      +.|++++|.+++. ++..+..+++|+.+++.++.+...............+++.|++++|.+.+..+..+..++.  |++
T Consensus       174 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          174 KKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             SEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             cEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence            9999999999854 4456889999999999998876432111000123468999999999999988888887755  999


Q ss_pred             EEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc-----cCC----c
Q 044724          326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG-----EIP----Q  396 (782)
Q Consensus       326 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~  396 (782)
                      |++++|++++..|..+.. +++|++|++++|.+++..|..+.        .+++|++|++++|...+     .+|    .
T Consensus       253 L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          253 LDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLH--------GLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             EECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTT--------TCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             EECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhc--------CCCCccEEeccchhhhcccccccccccChh
Confidence            999999999776776766 89999999999999998888877        79999999999876553     233    2


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccC--CChhccCC--CCCceEeccCCcceeeCCCCccc
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP--IPVEFCQL--DWLQILDISDNNISGSLPSCFHL  472 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~  472 (782)
                      .|..+++|++|++++|.+.+..+..|.++++|++|++++|.+...  .+..|..+  ++|+.|++++|++++..|     
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-----  398 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-----  398 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-----
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-----
Confidence            688899999999999999999999999999999999999985432  33344433  689999999999998888     


Q ss_pred             cchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCC-CCCCCcccccc
Q 044724          473 LSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNS-SLDKPFEISFD  550 (782)
Q Consensus       473 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~  550 (782)
                         ..+..+++|++|++++|++++.+| ..+.++++|++|++++|++++..+..+..++......... .+.....++  
T Consensus       399 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p--  473 (680)
T 1ziw_A          399 ---DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--  473 (680)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--
T ss_pred             ---hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC--
Confidence               567889999999999999998766 6899999999999999999988777776543111110000 000000000  


Q ss_pred             ccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCC------
Q 044724          551 FRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP------  624 (782)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------  624 (782)
                                                .....+++|+.|++++|++++..|..|.++++|++|+|++|++++..+      
T Consensus       474 --------------------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  527 (680)
T 1ziw_A          474 --------------------------SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG  527 (680)
T ss_dssp             --------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred             --------------------------cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence                                      001226789999999999998888889999999999999999996532      


Q ss_pred             --ccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCC
Q 044724          625 --STFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFL  692 (782)
Q Consensus       625 --~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~l  692 (782)
                        ..|+++++|++|+|++|+++...+..|.++++|++|++++|++++..+..+..+.+++.+++.+|...
T Consensus       528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence              24889999999999999999555567999999999999999999888877788899999999999643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-54  Score=503.68  Aligned_cols=508  Identities=18%  Similarity=0.162  Sum_probs=349.8

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN  175 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  175 (782)
                      +++++|+|++|++++..+..      |.++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++ +++..|++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS------FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCT
T ss_pred             CCcCEEECCCCCcCEeChhh------ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcc
Confidence            44555555555554443322      5555555555555555554445555555555555555555542 2222455555


Q ss_pred             CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCC----C-CC-CCCCCCC-
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF----S-PS-NDSWTLN-  247 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~----i-p~-~~~l~~L-  247 (782)
                      +|++|++++|.+++.. +..++++++|++|++++  |.+.+ .+|..+.+ +++|++|+++++    + |. ++.+++| 
T Consensus       105 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~--n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  180 (606)
T 3vq2_A          105 SLENLVAVETKLASLE-SFPIGQLITLKKLNVAH--NFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENP  180 (606)
T ss_dssp             TCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCS--SCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred             cCCEEEccCCcccccc-ccccCCCCCCCEEeCCC--CcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccc
Confidence            5555555555555443 34455555555555555  33332 33444444 555555555541    1 11 2233333 


Q ss_pred             ---CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCC------CccCCC
Q 044724          248 ---QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGP------FRLPIH  318 (782)
Q Consensus       248 ---~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~  318 (782)
                         +.+++++|.++ .+++..+... +|++|++++|.+.+......  ......++.+++..+...+.      ....+.
T Consensus       181 ~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~  256 (606)
T 3vq2_A          181 QVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTC--LQNLAGLHVHRLILGEFKDERNLEIFEPSIME  256 (606)
T ss_dssp             TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHH--HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred             cccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHH--hccccccccccccccccccCCcccccChHHhh
Confidence               36677777766 3444434333 67777777776543211000  12223444444432222111      011111


Q ss_pred             CCC--CCcEEEc-cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724          319 SHK--SLRLLDV-SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP  395 (782)
Q Consensus       319 ~~~--~L~~L~L-s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~  395 (782)
                      .+.  .++.+++ ..|.+.+.+|. +.. +++|+.|++++|.+.. +| .+.        .+++|++|++++|.+ +.+|
T Consensus       257 ~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~-l~-~l~--------~~~~L~~L~l~~n~l-~~lp  323 (606)
T 3vq2_A          257 GLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKY-LE-DVP--------KHFKWQSLSIIRCQL-KQFP  323 (606)
T ss_dssp             TGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCC-CC-CCC--------TTCCCSEEEEESCCC-SSCC
T ss_pred             hhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchh-hh-hcc--------ccccCCEEEcccccC-cccc
Confidence            111  4667777 67788877776 544 8999999999999864 44 444        688999999999999 5777


Q ss_pred             ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccC--CChhccCCCCCceEeccCCcceeeCCCCcccc
Q 044724          396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP--IPVEFCQLDWLQILDISDNNISGSLPSCFHLL  473 (782)
Q Consensus       396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  473 (782)
                       .+ .+++|++|++++|+..+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+++ +|      
T Consensus       324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~------  392 (606)
T 3vq2_A          324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS------  392 (606)
T ss_dssp             -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC------
T ss_pred             -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch------
Confidence             45 8999999999999665544  577899999999999999876  48889999999999999999885 55      


Q ss_pred             chhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccc
Q 044724          474 SIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR  552 (782)
Q Consensus       474 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (782)
                        ..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..                        
T Consensus       393 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------  446 (606)
T 3vq2_A          393 --ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------  446 (606)
T ss_dssp             --CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------
T ss_pred             --hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------
Confidence              356788999999999999998777 68899999999999999999888776644                        


Q ss_pred             ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCc-cCCcccccccccceeecccccccccCCccccCCC
Q 044724          553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIG-HIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE  631 (782)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  631 (782)
                                                   +++|+.|++++|.+++ .+|..++.+++|++|+|++|++++.+|..|++++
T Consensus       447 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          447 -----------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             -----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -----------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence                                         4579999999999998 4788999999999999999999999999999999


Q ss_pred             CCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccC-CCCcccccCCCCCCCCCCC
Q 044724          632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFA-TFNESSYKGNPFLCGLPLP  698 (782)
Q Consensus       632 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~lC~~~l~  698 (782)
                      +|++|++++|++++.+|..+.++++|++|++++|+++. +|..+..++ +++.+++.+||+.|+|+..
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            99999999999999999999999999999999999995 444377776 5999999999999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-53  Score=494.01  Aligned_cols=503  Identities=19%  Similarity=0.171  Sum_probs=407.9

Q ss_pred             CCEEEEEcCCCCCccccc-------------------cccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCC
Q 044724           67 GRVIQLYLSNTRSMELEE-------------------WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNN  127 (782)
Q Consensus        67 ~~V~~L~L~~~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~  127 (782)
                      ..++.|+++++.+....+                   ..+.+..|.++++|++|+|++|++++..|..      |+++++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~  106 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA------LSGPKA  106 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT------TSSCTT
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh------hccccc
Confidence            357777777776643211                   1133556899999999999999999877764      999999


Q ss_pred             CcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCcc--EE
Q 044724          128 LKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLE--HL  205 (782)
Q Consensus       128 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~--~L  205 (782)
                      |++|+|++|.+++..+..++++++|++|++++|.++ .++...+..+++|++|++++|.+++.. +..++.+++|+  +|
T Consensus       107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSL  184 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCSEEE
T ss_pred             ccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCcccccC-hhhhhhhcccceeEE
Confidence            999999999999887889999999999999999998 443225666999999999999999875 77888999999  89


Q ss_pred             ecccCcccccccchHHHhhcCCCCCeEeCCCCC--CC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCcc
Q 044724          206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS--PS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEI  282 (782)
Q Consensus       206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~i--p~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  282 (782)
                      ++++  +.+.+..|..+.  ..+|++|++++..  +. +..+..++...+...            .+..+....+....+
T Consensus       185 ~l~~--n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~------------~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          185 NLNG--NDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG------------TFEDMDDEDISPAVF  248 (606)
T ss_dssp             ECTT--CCCCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC------------CCTTSCCCCCCGGGG
T ss_pred             ecCC--CccCccChhHhh--hccccccccCCchhHHHHhhhccccchhheech------------hhccccccccChhHh
Confidence            9999  666665555443  3456666665411  11 111222211111111            111111111111111


Q ss_pred             ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccC
Q 044724          283 HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI  362 (782)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~  362 (782)
                      .         .....+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+.. +++|++|++++|.+++..
T Consensus       249 ~---------~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~  317 (606)
T 3t6q_A          249 E---------GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLC  317 (606)
T ss_dssp             G---------GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGG
T ss_pred             c---------hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCc
Confidence            1         111236888999999888888888999999999999999999 89988876 899999999999999887


Q ss_pred             CCcccccccccCCCCCCCCEEEccCccccccCCc-cccCCCCCcEEECcCCcccccC--CccccCcCCCCEEeCCCCccc
Q 044724          363 PSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ-SLSKCFLLKGLYLNNNNLSGKI--PQWLGNLTGLQHIIMPKNHLE  439 (782)
Q Consensus       363 p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~  439 (782)
                      |..+.        ++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.
T Consensus       318 ~~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          318 QISAS--------NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             GGCGG--------GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             hhhhh--------ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence            77776        799999999999999877665 4899999999999999998766  778999999999999999999


Q ss_pred             cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724          440 GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       440 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      +..|..|..+++|++|++++|++++..|.       ..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          390 SLKTEAFKECPQLELLDLAFTRLKVKDAQ-------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             EECTTTTTTCTTCSEEECTTCCEECCTTC-------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             cCCHHHhcCCccCCeEECCCCcCCCcccc-------hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            99999999999999999999999987664       34788999999999999999888999999999999999999998


Q ss_pred             CcC-C--cccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccC
Q 044724          520 GLI-P--PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI  596 (782)
Q Consensus       520 ~~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  596 (782)
                      +.. |  ..+.                                                     .+++|+.|++++|+++
T Consensus       463 ~~~~~~~~~~~-----------------------------------------------------~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          463 KGNIQKTNSLQ-----------------------------------------------------TLGRLEILVLSFCDLS  489 (606)
T ss_dssp             GGEECSSCGGG-----------------------------------------------------GCTTCCEEECTTSCCC
T ss_pred             ccccccchhhc-----------------------------------------------------cCCCccEEECCCCccC
Confidence            632 1  2222                                                     1668999999999999


Q ss_pred             ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724          597 GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       597 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      +..|..|+.+++|++|+|++|++++.+|..|.++++| .|++++|++++.+|..+..+++|+++++++|++++..+.
T Consensus       490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999999999999999999 999999999999999999999999999999999987663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.3e-53  Score=495.54  Aligned_cols=497  Identities=16%  Similarity=0.187  Sum_probs=304.4

Q ss_pred             CCCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCC--CCCCC--Ccc------------cceEecCCCCCEEEEEcCCCCCc
Q 044724           17 SEGCLDHERFALLQLKHFFNDPVNYLHDWVDAK--GATDC--CQW------------ANVECNNTTGRVIQLYLSNTRSM   80 (782)
Q Consensus        17 ~~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~gv~C~~~~~~V~~L~L~~~~~~   80 (782)
                      ...+..+|++||++||+++.+|     +|+...  ...+|  |.|            .||+|+. ++||++|+|+++++ 
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L-  335 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA-  335 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC-
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC-
Confidence            3456778999999999999876     797531  01345  999            9999986 79999999999987 


Q ss_pred             cccccccCcccccCCCCCCEEeC-CCCCCCCccCCCCccc----------------------------------------
Q 044724           81 ELEEWYLNAYLFTPFQQLESLSL-SANNIAGCVENEGASS----------------------------------------  119 (782)
Q Consensus        81 ~~~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~----------------------------------------  119 (782)
                       .|.+   +..|+++++|++||| ++|.++|..+......                                        
T Consensus       336 -~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          336 -KGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             -EEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             -CCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence             3432   256889999999999 8888877633210000                                        


Q ss_pred             -----ccccCCCCCcEEeCCC--CCCCCcchhhcCCCCCCCEEEccCCcCcC-----------------cCChhhhc--C
Q 044724          120 -----REVTRLNNLKMFDLSG--NSFNNSILSSLTRLSSVRSLKLSYNRLEG-----------------SIDVKEFD--S  173 (782)
Q Consensus       120 -----~~l~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~ip~~~~~--~  173 (782)
                           ........++.+.+..  |.+++ +|..|+++++|++|+|++|.++|                 .+|. .++  +
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~  489 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSN  489 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGG
T ss_pred             ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhcc
Confidence                 0000111122222222  44444 44445555555555555555543                 1343 322  4


Q ss_pred             CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc-ccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEE
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA-LNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLW  251 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~  251 (782)
                      +++|++|+|++|.+.+.. |..+.++++|++|++++  |. +++ .+|..++. ++                        
T Consensus       490 L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~--N~~lsg~~iP~~i~~-L~------------------------  541 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIAC--NRGISAAQLKADWTR-LA------------------------  541 (876)
T ss_dssp             CTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTT--CTTSCHHHHHHHHHH-HH------------------------
T ss_pred             CCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcC--CCCcccccchHHHHh-hh------------------------
Confidence            444444444444444432 44444444444444444  32 333 33333332 00                        


Q ss_pred             ccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724          252 LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN  331 (782)
Q Consensus       252 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n  331 (782)
                                                                                     ..+..+++|+.|++++|
T Consensus       542 ---------------------------------------------------------------~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          542 ---------------------------------------------------------------DDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             ---------------------------------------------------------------HCTTTTTTCCEEECCSS
T ss_pred             ---------------------------------------------------------------hcccccCCccEEEeeCC
Confidence                                                                           01113345666666666


Q ss_pred             cCCccCCh--hhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC-CcEEE
Q 044724          332 NFQGCIPV--EIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL-LKGLY  408 (782)
Q Consensus       332 ~l~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~  408 (782)
                      +++ .+|.  .+.. +++|+.|++++|.++ .+| .+.        ++++|++|++++|.++ .+|..+..+++ |++|+
T Consensus       559 ~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~--------~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          559 NLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFG--------TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             CCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCC--------TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred             cCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhc--------CCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence            666 5665  5554 666666666666665 444 443        5666666666666666 56666666666 66666


Q ss_pred             CcCCcccccCCccccCcCC--CCEEeCCCCccccCCChhc---c--CCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          409 LNNNNLSGKIPQWLGNLTG--LQHIIMPKNHLEGPIPVEF---C--QLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       409 Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      +++|.++ .+|..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|+++ .+|.       ..+..+
T Consensus       626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~-------~~~~~l  696 (876)
T 4ecn_A          626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT-------ELFATG  696 (876)
T ss_dssp             CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH-------HHHHTT
T ss_pred             CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH-------HHHccC
Confidence            6666666 55655555433  6666666666665544221   1  2346777777777776 4452       233466


Q ss_pred             CCCCEEEcCCCcceeecCccccC--------CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCG--------LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN  553 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (782)
                      ++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+...                        
T Consensus       697 ~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~------------------------  750 (876)
T 4ecn_A          697 SPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT------------------------  750 (876)
T ss_dssp             CCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT------------------------
T ss_pred             CCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc------------------------
Confidence            77777777777776 44443322        227777777777777 555544300                        


Q ss_pred             cccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc------ccccccCCccc
Q 044724          554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH------NNLTGTIPSTF  627 (782)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~  627 (782)
                                                 .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|
T Consensus       751 ---------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          751 ---------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             ---------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             ---------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence                                       14567777787777776 677777777888887765      88888999999


Q ss_pred             cCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC--CCC
Q 044724          628 SKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC--GLP  696 (782)
Q Consensus       628 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC--~~~  696 (782)
                      +++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+..........+.+|+..|  ||+
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            9999999999999999 68888765  689999999999887666544444445556667776655  664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.8e-53  Score=490.75  Aligned_cols=517  Identities=18%  Similarity=0.202  Sum_probs=329.3

Q ss_pred             CCcHHHHHHHHHhHhcCCCCC--------CCcCCCCCCCCCCCCCcc---cceEecCCCCCEEEEEcCCCCCcccccccc
Q 044724           19 GCLDHERFALLQLKHFFNDPV--------NYLHDWVDAKGATDCCQW---ANVECNNTTGRVIQLYLSNTRSMELEEWYL   87 (782)
Q Consensus        19 ~~~~~~~~aLl~~k~~~~~~~--------~~l~~W~~~~~~~~~C~w---~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~   87 (782)
                      .....|++||.++|+++.++.        ...++|..   +++||.|   .||+|+. .|||++|+|+++++  .|.+  
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~l--   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGRV--   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEEE--
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCcC--
Confidence            344579999999999986432        12447975   6899999   9999986 49999999999987  3442  


Q ss_pred             CcccccCCCCCCEEeCCCCCCCCccCCC-------CcccccccCCCCCcEEeCCCCCCCCcchhhcCC------------
Q 044724           88 NAYLFTPFQQLESLSLSANNIAGCVENE-------GASSREVTRLNNLKMFDLSGNSFNNSILSSLTR------------  148 (782)
Q Consensus        88 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------------  148 (782)
                       +..|+++++|++|+|++|.+.......       .++.   ..+..|+ +++++|.+.+.+|..+..            
T Consensus        98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~---~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~  172 (636)
T 4eco_A           98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD---EQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ  172 (636)
T ss_dssp             -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH---HHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred             -ChHHhcCccceEEECcCCccccCCccccccccccCchH---HHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence             246899999999999999762111000       0000   1134455 666666665555554441            


Q ss_pred             -------CCCCCEEEcc--CCcCcCcCChhhhcCCCCCCEEEcccCCCCCc-----------------cCCCCCC--CCC
Q 044724          149 -------LSSVRSLKLS--YNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL-----------------VVPQGFP--HFK  200 (782)
Q Consensus       149 -------l~~L~~L~Ls--~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~l~--~l~  200 (782)
                             ...++.+.+.  .|+++| ||. .++++++|++|+|++|.+++.                 . |..++  +++
T Consensus       173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~  249 (636)
T 4eco_A          173 KSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLK  249 (636)
T ss_dssp             CCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCT
T ss_pred             cccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccC
Confidence                   1112222222  466665 665 677777777777777777762                 2 66666  777


Q ss_pred             CccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCce-eee-ecCCCCcCCCCCCcEEEcc
Q 044724          201 SLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNH-FRI-PISPDPLFNHSRLKIFHAY  278 (782)
Q Consensus       201 ~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~-l~~-~~~~~~l~~l~~L~~L~l~  278 (782)
                      +|++|++++  |.+.+.+|..+++                   +++|++|++++|+ ++| .+|.. ++++.        
T Consensus       250 ~L~~L~L~~--n~l~~~~p~~l~~-------------------l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~--------  299 (636)
T 4eco_A          250 DLTDVEVYN--CPNLTKLPTFLKA-------------------LPEMQLINVACNRGISGEQLKDD-WQALA--------  299 (636)
T ss_dssp             TCCEEEEEC--CTTCSSCCTTTTT-------------------CSSCCEEECTTCTTSCHHHHHHH-HHHHH--------
T ss_pred             CCCEEEecC--CcCCccChHHHhc-------------------CCCCCEEECcCCCCCccccchHH-HHhhh--------
Confidence            777777777  4444444433322                   2333333333343 333 22211 11000        


Q ss_pred             CCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCCh--hhhhcCCCCcEEEcccC
Q 044724          279 NNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPV--EIGDILPSLSCFNISMN  356 (782)
Q Consensus       279 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~--~~~~~l~~L~~L~Ls~n  356 (782)
                                                           .+..+++|++|++++|+++ .+|.  .+.. +++|+.|++++|
T Consensus       300 -------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N  340 (636)
T 4eco_A          300 -------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYN  340 (636)
T ss_dssp             -------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSC
T ss_pred             -------------------------------------ccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCC
Confidence                                                 0112356777777777777 6776  6665 777777777777


Q ss_pred             cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC-CcEEECcCCcccccCCccccCcC--CCCEEeC
Q 044724          357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL-LKGLYLNNNNLSGKIPQWLGNLT--GLQHIIM  433 (782)
Q Consensus       357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L  433 (782)
                      .++|.+| .+.        .+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++
T Consensus       341 ~l~g~ip-~~~--------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L  409 (636)
T 4eco_A          341 QLEGKLP-AFG--------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF  409 (636)
T ss_dssp             CCEEECC-CCE--------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred             cCccchh-hhC--------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence            7777777 555        5777777788777777 66777777777 788888877777 6676666544  7777777


Q ss_pred             CCCccccCCChhcc-------CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcc-ccCC
Q 044724          434 PKNHLEGPIPVEFC-------QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-LCGL  505 (782)
Q Consensus       434 ~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l  505 (782)
                      ++|.+++..|..+.       .+++|++|++++|+++ .+|.       ..+..+++|++|+|++|+++ .+|.. +...
T Consensus       410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK-------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT-------HHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             cCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH-------HHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            77777777777776       6667777777777777 4442       34456777777777777777 44433 2222


Q ss_pred             -------CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeec
Q 044724          506 -------NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQ  578 (782)
Q Consensus       506 -------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (782)
                             ++|++|+|++|+++ .+|..+...                                                 
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-------------------------------------------------  510 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRAT-------------------------------------------------  510 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTT-------------------------------------------------
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhc-------------------------------------------------
Confidence                   27777888877777 555544300                                                 


Q ss_pred             chhhcccceeeccCCccCccCCcccccccccceeec------ccccccccCCccccCCCCCCEEecCCCccccCCchhhh
Q 044724          579 GRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNL------SHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLV  652 (782)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~  652 (782)
                        .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..++++++|++|+|++|++ +.+|..+.
T Consensus       511 --~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          511 --TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             --TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             --cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence              04567778888887776 7777777788888877      45777778888888888888888888888 57777655


Q ss_pred             cCCCCcEEEcccCcCcccCCCCccc--cCCCCcccccCCCCCCCCC
Q 044724          653 ELNAFVVFSFACNNLSGKIPELTAQ--FATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       653 ~l~~L~~L~ls~N~l~~~~p~~~~~--~~~l~~~~~~gNp~lC~~~  696 (782)
                        ++|++|++++|++....+..+..  ......+.+..+...|+|+
T Consensus       587 --~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          587 --PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             --TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             --CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence              67888888888776544331111  1222334444555555654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.6e-49  Score=455.98  Aligned_cols=479  Identities=22%  Similarity=0.209  Sum_probs=377.7

Q ss_pred             CCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEE
Q 044724          126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL  205 (782)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  205 (782)
                      ++|++|+|++|.+++..+..|.++++|++|++++|.++ .+++..|.++++|++|+|++|.+++.. |..|+++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccCCEE
Confidence            78999999999999988889999999999999999998 565558999999999999999999986 8999999999999


Q ss_pred             ecccCcccccccchHHHhhcCCCCCeEeCCC------CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCCCc----E
Q 044724          206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSN------FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLK----I  274 (782)
Q Consensus       206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~------~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~----~  274 (782)
                      ++++  +.+.+..+..++. +++|++|++++      .+|. ++++++|+.|++++|.+++. ++..++.+++|+    +
T Consensus       110 ~L~~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          110 VAVE--TKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             ECTT--SCCCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCE
T ss_pred             EccC--CccccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-Chhhhhhhhccccccce
Confidence            9999  6555555455666 77777777766      2344 66677777777777777643 333455554443    6


Q ss_pred             EEccCCccceeccccccCCCCCCCccEEEccCCCCC-CCCccCCCCCCCCcEEEccCCcCCcc-----CChhhhhcCC--
Q 044724          275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGD-GPFRLPIHSHKSLRLLDVSNNNFQGC-----IPVEIGDILP--  346 (782)
Q Consensus       275 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~-----ip~~~~~~l~--  346 (782)
                      +++++|.+.+..+..    ....+|++|++++|.+. +..+..+.++++++.+++..+.+.+.     ++......+.  
T Consensus       186 L~l~~n~l~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l  261 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQA----FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV  261 (606)
T ss_dssp             EECTTCCCCEECTTT----TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred             eeccCCCcceeCccc----ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence            777777766543322    12225666666666554 23344445556666655544333211     1111111111  


Q ss_pred             CCcEEEc-ccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCc
Q 044724          347 SLSCFNI-SMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNL  425 (782)
Q Consensus       347 ~L~~L~L-s~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  425 (782)
                      .++.+++ ..|.+.+.+|. +.        .+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+
T Consensus       262 ~l~~l~l~~~~~~~~~~~~-~~--------~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l  327 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVK-FH--------CLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DL  327 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGS-CG--------GGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CC
T ss_pred             cHhheeccccccccccccc-cc--------cCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CC
Confidence            3344445 55566665554 44        7899999999999997 455 789999999999999999 5788 45 99


Q ss_pred             CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC--CCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724          426 TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC  503 (782)
Q Consensus       426 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  503 (782)
                      ++|++|++++|+..+..  .+..+++|++|++++|++++..  |        ..+..+++|++|++++|.+++ +|..+.
T Consensus       328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~--------~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS--------YSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC--------HHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh--------hhhccCCcccEeECCCCcccc-chhhcc
Confidence            99999999999665444  6779999999999999998763  6        678899999999999999985 568899


Q ss_pred             CCCCCCEEEccCCcCCCcCC-cccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhh
Q 044724          504 GLNQLQLLDLSDNNLHGLIP-PFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVL  582 (782)
Q Consensus       504 ~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  582 (782)
                      .+++|+.|++++|++.+..| ..+..                                                     +
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------------------l  423 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLS-----------------------------------------------------L  423 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTT-----------------------------------------------------C
T ss_pred             CCCCCCeeECCCCccCCccChhhhhc-----------------------------------------------------c
Confidence            99999999999999998776 34432                                                     5


Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccc-cCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG-TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      ++|+.|++++|.+++..|..++.+++|++|++++|++++ .+|..|+.+++|++|++++|++++.+|..+..+++|++|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            689999999999999999999999999999999999998 4899999999999999999999999999999999999999


Q ss_pred             cccCcCcccCCCCccccCCCCcccccCCCCC
Q 044724          662 FACNNLSGKIPELTAQFATFNESSYKGNPFL  692 (782)
Q Consensus       662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~l  692 (782)
                      +++|++++.+|..+..+++++.+++.+|+..
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            9999999999988888999999999999865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-49  Score=456.20  Aligned_cols=406  Identities=18%  Similarity=0.151  Sum_probs=247.6

Q ss_pred             CCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeC
Q 044724           54 CCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDL  133 (782)
Q Consensus        54 ~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~L  133 (782)
                      .|.|.|+ |+....+++          .     ++...   .++|++|+|++|++++..+..      |.++++|++|+|
T Consensus         3 ~C~~~~~-c~~~~~~l~----------~-----ip~~~---~~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L   57 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFT----------S-----IPSGL---TAAMKSLDLSFNKITYIGHGD------LRACANLQVLIL   57 (549)
T ss_dssp             EECTTSE-EECTTSCCS----------S-----CCSCC---CTTCCEEECCSSCCCEECSST------TSSCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccc----------c-----ccccC---CCCccEEECcCCccCccChhh------hhcCCcccEEEC
Confidence            5999998 975332222          1     12222   278999999999998776654      899999999999


Q ss_pred             CCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCccc
Q 044724          134 SGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIA  213 (782)
Q Consensus       134 s~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~  213 (782)
                      ++|.+++..|.+|+++++|++|++++|.++ .+++..|+++++|++|++++|.+++...|..++++++|++|++++  +.
T Consensus        58 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~--n~  134 (549)
T 2z81_A           58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--VE  134 (549)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE--SS
T ss_pred             CCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC--Cc
Confidence            999999988899999999999999999998 567657999999999999999999765578899999999999999  44


Q ss_pred             ccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCC
Q 044724          214 LNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLT  293 (782)
Q Consensus       214 ~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  293 (782)
                      ..+.++..                  .+..+++|+.|++++|.+++.+|. .+..+++|+.|+++.|.+.......   .
T Consensus       135 ~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~---~  192 (549)
T 2z81_A          135 TFSEIRRI------------------DFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIF---A  192 (549)
T ss_dssp             SCCEECTT------------------TTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHH---H
T ss_pred             cccccCHh------------------hhhcccccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhh---H
Confidence            33343321                  133466778888888888876664 5888888888888888764322111   1


Q ss_pred             CCCCCccEEEccCCCCCCCC--cc-CCCCCCCCcEEEccCCcCCccCChhhh---hcCCCCcEEEcccCcCcccCCCccc
Q 044724          294 APTFQLKSLSLSSGYGDGPF--RL-PIHSHKSLRLLDVSNNNFQGCIPVEIG---DILPSLSCFNISMNALDGSIPSSFE  367 (782)
Q Consensus       294 ~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~Ls~n~l~~~~p~~~~  367 (782)
                      ....+|++|++++|.+.+..  +. ....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+...-  .
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~--~  270 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF--N  270 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC--C
T ss_pred             hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc--c
Confidence            12345666666666555431  11 123455666666666666554443332   1245666666666665543110  0


Q ss_pred             ccccccCCCCCCCCEEEccCcccccc-----CCccccCCCCCcEEECcCCcccccCCccc-cCcCCCCEEeCCCCccccC
Q 044724          368 GHMFSKNFNLTNVRWLLLEENHFVGE-----IPQSLSKCFLLKGLYLNNNNLSGKIPQWL-GNLTGLQHIIMPKNHLEGP  441 (782)
Q Consensus       368 g~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~  441 (782)
                      ......+..+++|+.|++.++.+...     ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++++.
T Consensus       271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~  349 (549)
T 2z81_A          271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE  349 (549)
T ss_dssp             CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc
Confidence            00011112455556666655544321     1111122344555555555554 344333 3455555555555555544


Q ss_pred             CCh---hccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcC
Q 044724          442 IPV---EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL  518 (782)
Q Consensus       442 ~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  518 (782)
                      +|.   .+..+++|++|++++|++++..+..      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus       350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTG------EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             HHHHHTCTTSSTTCCEEECTTSCCCCHHHHH------HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred             cccchhhhhccccCcEEEccCCcccccccch------hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence            322   2444555555555555554321100      12444555555555555555 3444555555555555555554


Q ss_pred             C
Q 044724          519 H  519 (782)
Q Consensus       519 ~  519 (782)
                      +
T Consensus       423 ~  423 (549)
T 2z81_A          423 R  423 (549)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-48  Score=465.82  Aligned_cols=491  Identities=19%  Similarity=0.163  Sum_probs=345.7

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI-LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS  173 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~  173 (782)
                      .+++++|||++|.+++..+..      |.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..| ..|.+
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~   95 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASS------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQG   95 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSS------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCS
T ss_pred             CCCcCEEECCCCcCCccChhH------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccC
Confidence            478999999999998776654      899999999999999666555 7889999999999999999984445 48999


Q ss_pred             CCCCCEEEcccCCCCCccCCC--CCCCCCCccEEecccCcccccccch-HHHhhcCCCCCeEeCCCCCCCCCCCCCCCeE
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQ--GFPHFKSLEHLDMSYAHIALNTNFL-QIIGESMPSLKHLSLSNFSPSNDSWTLNQVL  250 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~-~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L  250 (782)
                      +++|++|+|++|.+++.. |.  .+.++++|++|++++  |.+.+..+ ..                   ++++++|+.|
T Consensus        96 l~~L~~L~Ls~n~l~~~~-~~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~-------------------~~~L~~L~~L  153 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAV-LKDGYFRNLKALTRLDLSK--NQIRSLYLHPS-------------------FGKLNSLKSI  153 (844)
T ss_dssp             CSSCCCEECTTCCCSSCC-STTCCCSSCSSCCEEEEES--CCCCCCCCCGG-------------------GGTCSSCCEE
T ss_pred             CcccCEeeCcCCCCCccc-ccCccccccCCCCEEECCC--Ccccccccchh-------------------HhhCCCCCEE
Confidence            999999999999998754 33  488999999999998  55444322 22                   3346777788


Q ss_pred             EccCceeeeecCCCCcCCC--CCCcEEEccCCccceeccccccC---CCCCCCccEEEccCCCCCCCCccCCCC---CCC
Q 044724          251 WLSNNHFRIPISPDPLFNH--SRLKIFHAYNNEIHAEITESHSL---TAPTFQLKSLSLSSGYGDGPFRLPIHS---HKS  322 (782)
Q Consensus       251 ~Ls~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~  322 (782)
                      ++++|.+++..+ ..+..+  ++|+.|+++.|.+.+..+.....   ......|+.|++++|.+.+..+..+..   .++
T Consensus       154 ~Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~  232 (844)
T 3j0a_A          154 DFSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ  232 (844)
T ss_dssp             EEESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred             ECCCCcCCeeCH-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence            888888875544 346655  78888888888887653321110   011123667777766665544443322   245


Q ss_pred             CcEEEccCCc---------CCccCChhhhh-cCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc
Q 044724          323 LRLLDVSNNN---------FQGCIPVEIGD-ILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG  392 (782)
Q Consensus       323 L~~L~Ls~n~---------l~~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~  392 (782)
                      ++.++++.+.         +.+..+..+.. ..++|+.|++++|.+.+..|..+.        .+++|++|++++|.+++
T Consensus       233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~i~~  304 (844)
T 3j0a_A          233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--------TLKDLKVLNLAYNKINK  304 (844)
T ss_dssp             BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--------SCCCCCEEEEESCCCCE
T ss_pred             ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--------cCCCCCEEECCCCcCCC
Confidence            6666655322         22111111111 025677777777776666555555        56677777777777776


Q ss_pred             cCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccc
Q 044724          393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHL  472 (782)
Q Consensus       393 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  472 (782)
                      ..|..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++ ++     
T Consensus       305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~-----  378 (844)
T 3j0a_A          305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH-----  378 (844)
T ss_dssp             ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS-----
T ss_pred             CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc-----
Confidence            666667777777777777777766666667777777777777777766666666667777777777776652 22     


Q ss_pred             cchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccc
Q 044724          473 LSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR  552 (782)
Q Consensus       473 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (782)
                             .+++|+.|++++|+++ .+|..   ..+++.|++++|++++.....+.                         
T Consensus       379 -------~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~-------------------------  422 (844)
T 3j0a_A          379 -------FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL-------------------------  422 (844)
T ss_dssp             -------SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH-------------------------
T ss_pred             -------CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh-------------------------
Confidence                   2566777777777766 33432   34566777777776643211100                         


Q ss_pred             ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc-ccccccccceeeccccccc-----ccCCcc
Q 044724          553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLT-----GTIPST  626 (782)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-----~~~p~~  626 (782)
                                                 ..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++     +..|..
T Consensus       423 ---------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~  475 (844)
T 3j0a_A          423 ---------------------------LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV  475 (844)
T ss_dssp             ---------------------------TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred             ---------------------------hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence                                       0166899999999999976544 4667899999999999997     455677


Q ss_pred             ccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCC
Q 044724          627 FSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCG  694 (782)
Q Consensus       627 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~  694 (782)
                      |.++++|+.|+|++|++++.+|..|..+++|+.|++++|++++..|..+.  .+++.+++++|....-
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence            99999999999999999999999999999999999999999998877443  7899999999986553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-48  Score=445.11  Aligned_cols=492  Identities=20%  Similarity=0.240  Sum_probs=351.2

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN  175 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  175 (782)
                      +++++|||++|++++..+..      |.++++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+|+..|.+++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  100 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS  100 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTT------TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCT
T ss_pred             ccccEEEccCCccCccChhH------hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcc
Confidence            45777777777776554432      677777777777777777666667777777777777777776 45544677777


Q ss_pred             CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccC
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSN  254 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~  254 (782)
                      +|++|++++|++++.. +..++++++|++|++++  +.+.+ .+|..+.+ +++|++|                  ++++
T Consensus       101 ~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~--n~l~~~~lp~~~~~-l~~L~~L------------------~l~~  158 (570)
T 2z63_A          101 SLQKLVAVETNLASLE-NFPIGHLKTLKELNVAH--NLIQSFKLPEYFSN-LTNLEHL------------------DLSS  158 (570)
T ss_dssp             TCCEEECTTSCCCCST-TCSCTTCTTCCEEECCS--SCCCCCCCCGGGGG-CTTCCEE------------------ECTT
T ss_pred             ccccccccccccccCC-CccccccccccEEecCC--CccceecChhhhcc-cCCCCEE------------------eCcC
Confidence            7777777777777664 44577777777777777  44443 34555554 4444443                  3344


Q ss_pred             ceeeeecCCCCcCCCCCC----cEEEccCCccceeccccccCCCCCCCccEEEccCCCCCC-CCccCCCCCCCCcEEEcc
Q 044724          255 NHFRIPISPDPLFNHSRL----KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDG-PFRLPIHSHKSLRLLDVS  329 (782)
Q Consensus       255 n~l~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~Ls  329 (782)
                      |.+++ +++..+..+++|    +.+++++|.+.+..+..    ....+++.|++++|.... ..+..+..+++++.+++.
T Consensus       159 n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          159 NKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             SCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             Cccce-ecHHHccchhccchhhhhcccCCCCceecCHHH----hccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            44432 222223344444    44444444444432221    111134444444432211 112223344555554443


Q ss_pred             CCcCCc-----cCChhhhhcCC--CCcEEEcccC-cCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          330 NNNFQG-----CIPVEIGDILP--SLSCFNISMN-ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       330 ~n~l~~-----~ip~~~~~~l~--~L~~L~Ls~n-~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      ...+..     .++...+..++  .++.++++++ .+.+..|..+.        .+++|++|++++|.++ .+|..+..+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~--------~l~~L~~L~l~~~~l~-~l~~~~~~~  304 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN--------CLTNVSSFSLVSVTIE-RVKDFSYNF  304 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG--------GGTTCSEEEEESCEEC-SCCBCCSCC
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc--------CcCcccEEEecCccch-hhhhhhccC
Confidence            221110     22222222222  3566777777 66666666665        7899999999999998 578888888


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC--CCCccccchhhhc
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL--PSCFHLLSIEQIN  479 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~  479 (782)
                       +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|++++..  |        ..+.
T Consensus       305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~--------~~~~  370 (570)
T 2z63_A          305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS--------QSDF  370 (570)
T ss_dssp             -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE--------HHHH
T ss_pred             -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc--------cccc
Confidence             9999999999998 5555  4788999999999998877665  78899999999999998654  4        5678


Q ss_pred             CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCc-ccccccccccccCCCCCCCCcccccccccccccc
Q 044724          480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP-FFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV  558 (782)
Q Consensus       480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (782)
                      .+++|++|++++|.+++..+. +..+++|++|++++|++++..|. .+..                              
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------  419 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------  419 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT------------------------------
T ss_pred             ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc------------------------------
Confidence            899999999999999866554 89999999999999999876652 2222                              


Q ss_pred             ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccc-ccCCccccCCCCCCEEe
Q 044724          559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT-GTIPSTFSKLEAYRNLD  637 (782)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~Ld  637 (782)
                                             +++|+.|++++|.+++..|..+.++++|++|+|++|.++ +.+|..|+.+++|++|+
T Consensus       420 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          420 -----------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             -----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             -----------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence                                   567999999999999999999999999999999999998 67899999999999999


Q ss_pred             cCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCCC
Q 044724          638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLP  698 (782)
Q Consensus       638 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~  698 (782)
                      +++|++++..|..|..+++|++|++++|++++.+|..+..+++++.+++.+||+.|+|+..
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999988999999999999999999999998887888999999999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-48  Score=447.00  Aligned_cols=497  Identities=21%  Similarity=0.239  Sum_probs=386.7

Q ss_pred             CCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhh
Q 044724           66 TGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSS  145 (782)
Q Consensus        66 ~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~  145 (782)
                      ..+++.|+++++.+...     .+..|.++++|++|+|++|++++..+..      |+++++|++|+|++|.+++..|..
T Consensus        27 ~~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~i~~~~------~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGA------YQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             CSSCCEEECCSCCCCEE-----CTTTTTTCSSCCEEECTTCCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTT
T ss_pred             cccccEEEccCCccCcc-----ChhHhhCCCCceEEECCCCcCCccCccc------ccCchhCCEEeCcCCcCCccCHhh
Confidence            34799999999987533     3456899999999999999998766553      899999999999999999888899


Q ss_pred             cCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhc
Q 044724          146 LTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES  225 (782)
Q Consensus       146 ~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~  225 (782)
                      |+++++|++|++++|.++ .++...++++++|++|++++|.+++..+|..++++++|++|++++  +.+.+..+..+.. 
T Consensus        96 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~-  171 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--NKIQSIYCTDLRV-  171 (570)
T ss_dssp             TTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT--SCCCEECGGGGHH-
T ss_pred             hcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC--CccceecHHHccc-
Confidence            999999999999999998 677657999999999999999999865588999999999999999  6666666666666 


Q ss_pred             CCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEcc
Q 044724          226 MPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLS  305 (782)
Q Consensus       226 l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~  305 (782)
                      +++|+.+              .+.+++++|.+++.. +..+..+ +|+.|++++|.......  .........++...+.
T Consensus       172 l~~L~~~--------------~~~L~l~~n~l~~~~-~~~~~~~-~L~~L~l~~n~~~~~~~--~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          172 LHQMPLL--------------NLSLDLSLNPMNFIQ-PGAFKEI-RLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             HHTCTTC--------------CCEEECTTCCCCEEC-TTTTTTC-EEEEEEEESCCSCTTHH--HHHHHTTTTCEEEEEE
T ss_pred             hhccchh--------------hhhcccCCCCceecC-HHHhccC-cceeEecccccccccch--hhhhcCccccceeeec
Confidence            5555110              034555555555322 2333333 56666665553211000  0000001111111111


Q ss_pred             CCCC------CCCCccCCCCCC--CCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCC
Q 044724          306 SGYG------DGPFRLPIHSHK--SLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN  376 (782)
Q Consensus       306 ~n~~------~~~~~~~~~~~~--~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~  376 (782)
                      ....      .......+..++  .++.++++++ .+.+.+|..+.. +++|+.|++++|.++ .+|..+.        .
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~--------~  303 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSY--------N  303 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCS--------C
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhc--------c
Confidence            0000      000011122222  3577888877 677777777766 899999999999987 4565554        5


Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCC--ChhccCCCCCce
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPI--PVEFCQLDWLQI  454 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~  454 (782)
                      + +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++
T Consensus       304 ~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  377 (570)
T 2z63_A          304 F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY  377 (570)
T ss_dssp             C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred             C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence            6 9999999999998 5554  4788999999999998876665  78899999999999998664  788899999999


Q ss_pred             EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccc
Q 044724          455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE  533 (782)
Q Consensus       455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  533 (782)
                      |++++|++++..+        . +..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+..     
T Consensus       378 L~l~~n~l~~~~~--------~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  443 (570)
T 2z63_A          378 LDLSFNGVITMSS--------N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----  443 (570)
T ss_dssp             EECCSCSEEEEEE--------E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----
T ss_pred             EECCCCccccccc--------c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-----
Confidence            9999999986544        3 6789999999999999987766 57889999999999999999887766543     


Q ss_pred             cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccC-ccCCccccccccccee
Q 044724          534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLI-GHIPPPIGNLTRIQIL  612 (782)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L  612 (782)
                                                                      +++|+.|++++|.++ +.+|..++.+++|++|
T Consensus       444 ------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          444 ------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             ------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             ------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence                                                            558999999999998 6799999999999999


Q ss_pred             ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724          613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      +|++|++++..|..|+++++|++|++++|++++..|..|.++++|+.|++++|++++.+|.
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999999999999999999999888999999999999999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.5e-47  Score=442.05  Aligned_cols=508  Identities=20%  Similarity=0.212  Sum_probs=340.1

Q ss_pred             CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCC
Q 044724           97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNN  176 (782)
Q Consensus        97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  176 (782)
                      ++++|||++|+|++..+..      |.++++|++|||++|.++++.+.+|.++++|++|+|++|+++ .+|+..|.++++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~------f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~  125 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS  125 (635)
T ss_dssp             TCCEEECTTSCCCEECTTT------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTT
T ss_pred             CCCEEEeeCCCCCCCCHHH------HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCC
Confidence            4555666666555443332      555566666666666555555555555666666666666555 455445555666


Q ss_pred             CCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCC-C----CC-CCCCC----
Q 044724          177 LEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNF-S----PS-NDSWT----  245 (782)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~-i----p~-~~~l~----  245 (782)
                      |++|+|++|++++.. +..|+++++|++|++++  |.+.+ ..|..+.. +++|++|+++++ +    |. +..+.    
T Consensus       126 L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          126 LQKLVAVETNLASLE-NFPIGHLKTLKELNVAH--NLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             CCEEECTTSCCCCST-TCCCTTCTTCCEEECCS--SCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCEEECCCCcCCCCC-hhhhhcCcccCeecccc--CccccCCCchhhcc-chhhhhhcccCccccccccccccchhhhhh
Confidence            666666666555543 44455556666666655  33322 23444444 555666655551 1    11 21111    


Q ss_pred             CCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCC------CCCCCccCCCC
Q 044724          246 LNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGY------GDGPFRLPIHS  319 (782)
Q Consensus       246 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~  319 (782)
                      ....++++.|.+.. +++..+ ....++.+++.+|..........  ......++...+..+.      +.......+..
T Consensus       202 ~~~~~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~--~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  277 (635)
T 4g8a_A          202 LNLSLDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  277 (635)
T ss_dssp             CCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHH--HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred             hhhhhhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchh--hcCCccccccccccccccccccccccccccccc
Confidence            23456777777763 333323 33455667776665432211000  1112223322222111      11112223344


Q ss_pred             CCCCcEEEccCCcCCc---cCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          320 HKSLRLLDVSNNNFQG---CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       320 ~~~L~~L~Ls~n~l~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      ...+...++..+....   .++..+.. +.+++.+++..+.+....+  +.        ....++.|++.+|.+.+..+.
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~--~~--------~~~~L~~L~l~~~~~~~~~~~  346 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNC-LTNVSSFSLVSVTIERVKD--FS--------YNFGWQHLELVNCKFGQFPTL  346 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGG-GTTCSEEEEESCEEEECGG--GG--------SCCCCSEEEEESCEESSCCCC
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhh-hcccccccccccccccccc--cc--------cchhhhhhhcccccccCcCcc
Confidence            4556666655443321   22223333 6789999998888765433  22        467899999999988765443


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccc--cCCChhccCCCCCceEeccCCcceeeCCCCccccc
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS  474 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  474 (782)
                         .+..|+.+++..|.+....  ....+++|+.+++++|.+.  +..+..+..+.+|+.++++.|......+       
T Consensus       347 ---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-------  414 (635)
T 4g8a_A          347 ---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-------  414 (635)
T ss_dssp             ---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-------
T ss_pred             ---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-------
Confidence               4567899999998876433  3457899999999999875  3467778888999999999999875433       


Q ss_pred             hhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccc
Q 044724          475 IEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN  553 (782)
Q Consensus       475 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (782)
                        .+..+++|+.++++.|+.....+ ..+..+++++.++++.|.+.+..|..+..                         
T Consensus       415 --~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------  467 (635)
T 4g8a_A          415 --NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------  467 (635)
T ss_dssp             --CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------
T ss_pred             --cccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------------------
Confidence              45678999999999998775544 46788999999999999998777765533                         


Q ss_pred             cccccccccccEEEEEecCCeeeecchhhcccceeeccCCcc-CccCCcccccccccceeecccccccccCCccccCCCC
Q 044724          554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKL-IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEA  632 (782)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  632 (782)
                                                  ++.++.|++++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++
T Consensus       468 ----------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~  519 (635)
T 4g8a_A          468 ----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  519 (635)
T ss_dssp             ----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ----------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence                                        45789999999975 4568899999999999999999999999999999999


Q ss_pred             CCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcccc-CCCCcccccCCCCCCCCCC
Q 044724          633 YRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQF-ATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       633 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~l~~~~~~gNp~lC~~~l  697 (782)
                      |++|+|++|+|++..|..|..+++|++|++++|+|++.+|..+..+ .+++.+++.+|||.|+|.+
T Consensus       520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999999999999999999999999999999999999877776 6799999999999999863

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-47  Score=432.61  Aligned_cols=438  Identities=18%  Similarity=0.206  Sum_probs=227.6

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFN  175 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  175 (782)
                      ++|++|+|++|++++..+.      .|.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|. .  .++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~   90 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS------DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC-H--PTV   90 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH------HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC-C--CCC
T ss_pred             ccccEEECCCCcccccChh------hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc-c--ccC
Confidence            5666666666666544332      2566666666666666666555666666666666666666665 5554 2  566


Q ss_pred             CCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCC--CeEEcc
Q 044724          176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLN--QVLWLS  253 (782)
Q Consensus       176 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L--~~L~Ls  253 (782)
                      +|++|++++|.+++..+|..++++++|++|++++  +.+.+.   .+..                   +++|  +.|+++
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~--n~l~~~---~~~~-------------------l~~L~L~~L~l~  146 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST--THLEKS---SVLP-------------------IAHLNISKVLLV  146 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE--SSCCGG---GGGG-------------------GTTSCEEEEEEE
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecC--cccchh---hccc-------------------cccceeeEEEee
Confidence            6666666666665543355566666666666665  333221   1111                   2233  555555


Q ss_pred             Ccee--eeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCC-ccCCCCCCCCcEEEccC
Q 044724          254 NNHF--RIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLLDVSN  330 (782)
Q Consensus       254 ~n~l--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~Ls~  330 (782)
                      +|.+  .+..|. .+..+.. +                         ...+++++|...+.. ...+..+++|+.|++++
T Consensus       147 ~n~l~~~~~~~~-~l~~l~~-~-------------------------~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  199 (520)
T 2z7x_B          147 LGETYGEKEDPE-GLQDFNT-E-------------------------SLHIVFPTNKEFHFILDVSVKTVANLELSNIKC  199 (520)
T ss_dssp             ECTTTTSSCCTT-TTTTCCE-E-------------------------EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred             cccccccccccc-ccccccc-c-------------------------eEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence            5555  333322 1222221 0                         112222333332222 22345566777777777


Q ss_pred             Cc-------CCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc-----
Q 044724          331 NN-------FQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL-----  398 (782)
Q Consensus       331 n~-------l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----  398 (782)
                      |.       +.+.+| .+.. +++|+.|++++|.+++..+..+....     ..++|++|++++|+++|.+|..+     
T Consensus       200 n~~~~~~~~~~~~~~-~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~~~~~~~  272 (520)
T 2z7x_B          200 VLEDNKCSYFLSILA-KLQT-NPKLSNLTLNNIETTWNSFIRILQLV-----WHTTVWYFSISNVKLQGQLDFRDFDYSG  272 (520)
T ss_dssp             CCSTTTTHHHHHHHH-GGGG-CTTCCEEEEEEEEEEHHHHHHHHHHH-----HTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred             cccccccceeecchh-hhcc-ccchhhccccccccCHHHHHHHHHHh-----hhCcccEEEeecccccCccccchhhccc
Confidence            65       444444 3444 66677777766666543222211000     13466666666666666666655     


Q ss_pred             cCCCCCcEEECcCCcccccCC-ccccCc---CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccc
Q 044724          399 SKCFLLKGLYLNNNNLSGKIP-QWLGNL---TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLS  474 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  474 (782)
                      ..+++|+.+++++|.+  .+| ..+..+   .+|++|++++|.+....  .+..+++|++|++++|++++.+|       
T Consensus       273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-------  341 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVF-------  341 (520)
T ss_dssp             CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT-------
T ss_pred             ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhh-------
Confidence            5666666666666666  333 333333   45666666666554321  11455556666666666655555       


Q ss_pred             hhhhcCCCCCCEEEcCCCccee--ecCccccCCCCCCEEEccCCcCCCcCCcc-cccccccccccCCCCCCCCccccccc
Q 044724          475 IEQINGLSGLSHLILAHNNLEG--EVPVQLCGLNQLQLLDLSDNNLHGLIPPF-FYNTALHESYNNNSSLDKPFEISFDF  551 (782)
Q Consensus       475 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (782)
                       ..++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..                       
T Consensus       342 -~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-----------------------  397 (520)
T 2z7x_B          342 -ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-----------------------  397 (520)
T ss_dssp             -TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----------------------
T ss_pred             -hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----------------------
Confidence             344555566666666666554  33445555566666666666555433322 111                       


Q ss_pred             cccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCC
Q 044724          552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE  631 (782)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  631 (782)
                                                    +++|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..++
T Consensus       398 ------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~  444 (520)
T 2z7x_B          398 ------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE  444 (520)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             ------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC
Confidence                                          23455555555555555444443  45555555555555 4455444555


Q ss_pred             CCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCccc
Q 044724          632 AYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       632 ~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~  670 (782)
                      +|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus       445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            5555555555555 23332 55555555555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-47  Score=440.27  Aligned_cols=470  Identities=18%  Similarity=0.218  Sum_probs=355.5

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCC------CC------cchhhcCCCCCCCEEEccCCcCc
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSF------NN------SILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      .+++.|+|+++.+.|.+|++      +++|++|++|+|++|.+      .+      .+|...  +.+|+ +++++|.+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~  151 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDA------IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVD  151 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGG------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTC
T ss_pred             CCEEEEEecCcccCCcCChH------HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhc
Confidence            47788888888888777754      78888888888888865      11      223322  44566 667777666


Q ss_pred             CcCChhhhc-CCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCC
Q 044724          164 GSIDVKEFD-SFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSND  242 (782)
Q Consensus       164 ~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~  242 (782)
                      +.+|. .+. .+..+..+++....+..       .....++.+.+....+.+++ +|..+++                  
T Consensus       152 ~~~~~-~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~------------------  204 (636)
T 4eco_A          152 YDPRE-DFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMR------------------  204 (636)
T ss_dssp             CCGGG-GSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGG------------------
T ss_pred             cCchh-hHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhc------------------
Confidence            55554 332 12222333333222211       11123333334332255555 6665555                  


Q ss_pred             CCCCCCeEEccCceeeee-----------------cCCCCcC--CCCCCcEEEccCCccceeccccccCCCCCCCccEEE
Q 044724          243 SWTLNQVLWLSNNHFRIP-----------------ISPDPLF--NHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLS  303 (782)
Q Consensus       243 ~l~~L~~L~Ls~n~l~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~  303 (782)
                       +++|++|+|++|.+++.                 +|.. ++  ++++|++|++++|.+.                    
T Consensus       205 -l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~--------------------  262 (636)
T 4eco_A          205 -LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNL--------------------  262 (636)
T ss_dssp             -CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTC--------------------
T ss_pred             -ccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCC--------------------
Confidence             56666777777888764                 5543 55  6666666666665544                    


Q ss_pred             ccCCCCCCCCccCCCCCCCCcEEEccCCc-CCc-cCChhhhhcC------CCCcEEEcccCcCcccCCC--ccccccccc
Q 044724          304 LSSGYGDGPFRLPIHSHKSLRLLDVSNNN-FQG-CIPVEIGDIL------PSLSCFNISMNALDGSIPS--SFEGHMFSK  373 (782)
Q Consensus       304 l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~ip~~~~~~l------~~L~~L~Ls~n~l~~~~p~--~~~g~~~~~  373 (782)
                             +..|..++++++|++|++++|+ ++| .+|..++. +      ++|++|++++|.++ .+|.  .+.      
T Consensus       263 -------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~------  327 (636)
T 4eco_A          263 -------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQ------  327 (636)
T ss_dssp             -------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHT------
T ss_pred             -------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhc------
Confidence                   4456667789999999999998 998 89998886 5      89999999999998 7777  666      


Q ss_pred             CCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC-CCEEeCCCCccccCCChhccCCC--
Q 044724          374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG-LQHIIMPKNHLEGPIPVEFCQLD--  450 (782)
Q Consensus       374 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--  450 (782)
                        ++++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  
T Consensus       328 --~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          328 --KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             --TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             --cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence              79999999999999999999 8999999999999999999 88999999999 999999999999 7888887755  


Q ss_pred             CCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccc
Q 044724          451 WLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTA  530 (782)
Q Consensus       451 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  530 (782)
                      +|++|++++|++++.+|..+..... ....+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|.......
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDP-TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCS-SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhccccc-ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            8999999999999988854321000 0016789999999999999544445667999999999999999 5555432210


Q ss_pred             ccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc--cccc
Q 044724          531 LHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG--NLTR  608 (782)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~  608 (782)
                      .                                             .....+++|+.|+|++|+++ .+|..+.  .+++
T Consensus       481 ~---------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  514 (636)
T 4eco_A          481 N---------------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY  514 (636)
T ss_dssp             T---------------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred             c---------------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence            0                                             00011458999999999999 7888887  9999


Q ss_pred             cceeecccccccccCCccccCCCCCCEEec------CCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCC
Q 044724          609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDL------SYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFN  682 (782)
Q Consensus       609 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~  682 (782)
                      |+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|..+.++++|++|++++|++ +.+|..+.  ++++
T Consensus       515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~  590 (636)
T 4eco_A          515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNIS  590 (636)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCC
T ss_pred             cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCC
Confidence            9999999999997 8999999999999999      56889999999999999999999999999 77887433  7899


Q ss_pred             cccccCCCCCCCC
Q 044724          683 ESSYKGNPFLCGL  695 (782)
Q Consensus       683 ~~~~~gNp~lC~~  695 (782)
                      .+++++||+.|-.
T Consensus       591 ~L~Ls~N~l~~~~  603 (636)
T 4eco_A          591 VLDIKDNPNISID  603 (636)
T ss_dssp             EEECCSCTTCEEE
T ss_pred             EEECcCCCCcccc
Confidence            9999999999843

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.6e-46  Score=424.47  Aligned_cols=411  Identities=19%  Similarity=0.177  Sum_probs=304.8

Q ss_pred             CcccceEecC--CCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEe
Q 044724           55 CQWANVECNN--TTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFD  132 (782)
Q Consensus        55 C~w~gv~C~~--~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~  132 (782)
                      |++.+++.-.  ...+++.|+++++.+...     .+..|.++++|++|+|++|++++..+..      |+++++|++|+
T Consensus        12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~   80 (549)
T 2z81_A           12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKSSRINTIEGDA------FYSLGSLEHLD   80 (549)
T ss_dssp             CTTSCCSSCCSCCCTTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTTSCCCEECTTT------TTTCTTCCEEE
T ss_pred             CCCCccccccccCCCCccEEECcCCccCcc-----ChhhhhcCCcccEEECCCCCcCccChhh------ccccccCCEEE
Confidence            3455554432  235799999999987533     3456899999999999999999777654      99999999999


Q ss_pred             CCCCCCCCcchhhcCCCCCCCEEEccCCcCcC-cCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCc
Q 044724          133 LSGNSFNNSILSSLTRLSSVRSLKLSYNRLEG-SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAH  211 (782)
Q Consensus       133 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~  211 (782)
                      |++|.+++..|..|+++++|++|++++|.+++ .+|. .++++++|++|++++|.+.+...+..+.++++|++|++++  
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~--  157 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA--  157 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE--
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC--
Confidence            99999999888889999999999999999984 2344 7999999999999999955444357899999999999999  


Q ss_pred             ccccccchHHHhhcCCCCCeEeCCCC----CCC--CCCCCCCCeEEccCceeeeec--CCCCcCCCCCCcEEEccCCccc
Q 044724          212 IALNTNFLQIIGESMPSLKHLSLSNF----SPS--NDSWTLNQVLWLSNNHFRIPI--SPDPLFNHSRLKIFHAYNNEIH  283 (782)
Q Consensus       212 ~~~~~~~~~~l~~~l~~L~~L~L~~~----ip~--~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~l~~L~~L~l~~n~l~  283 (782)
                      +.+.+..|..+.. +++|++|+++..    +|.  +..+++|+.|++++|.+++..  +......+++|+.|++++|.+.
T Consensus       158 n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            7778888888877 788888877652    122  234677777777777766421  1122344566777777766655


Q ss_pred             eeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCC------hhhhhcCCCCcEEEcccCc
Q 044724          284 AEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIP------VEIGDILPSLSCFNISMNA  357 (782)
Q Consensus       284 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip------~~~~~~l~~L~~L~Ls~n~  357 (782)
                      +.....                       .+..+..+++|+.+++++|.+.+...      ..+. .+++|+.|++.++.
T Consensus       237 ~~~~~~-----------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~  292 (549)
T 2z81_A          237 DESFNE-----------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS-ELGKVETVTIRRLH  292 (549)
T ss_dssp             HHHHHH-----------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC-CCTTCCEEEEESCB
T ss_pred             hhHHHH-----------------------HHHHhhhhccccccccccccccccccccccchhhhh-hhcccccccccccc
Confidence            432110                       11223456899999999998875211      1122 37899999999987


Q ss_pred             CcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc-cCCCCCcEEECcCCcccccCCc---cccCcCCCCEEeC
Q 044724          358 LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL-SKCFLLKGLYLNNNNLSGKIPQ---WLGNLTGLQHIIM  433 (782)
Q Consensus       358 l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L  433 (782)
                      +.....  +. .++......++|++|++++|.++ .+|..+ ..+++|++|++++|++++.+|.   .++.+++|++|++
T Consensus       293 i~~~~~--~~-~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L  368 (549)
T 2z81_A          293 IPQFYL--FY-DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL  368 (549)
T ss_dssp             CSCGGG--SC-CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred             cchhhh--cc-cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence            653211  00 00000113578999999999997 567665 5799999999999999987643   4788999999999


Q ss_pred             CCCccccCCC--hhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEE
Q 044724          434 PKNHLEGPIP--VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL  511 (782)
Q Consensus       434 ~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  511 (782)
                      ++|++++..+  ..+..+++|++|++++|+++ .+|        ..+..+++|++|++++|++++ +|..+  .++|++|
T Consensus       369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp--------~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L  436 (549)
T 2z81_A          369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP--------DSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVL  436 (549)
T ss_dssp             TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC--------SCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEE
T ss_pred             cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC--------hhhcccccccEEECCCCCccc-ccchh--cCCceEE
Confidence            9999986543  56899999999999999998 677        456788999999999999973 34332  2466777


Q ss_pred             EccCCcCCC
Q 044724          512 DLSDNNLHG  520 (782)
Q Consensus       512 ~Ls~N~l~~  520 (782)
                      ++++|++++
T Consensus       437 ~Ls~N~l~~  445 (549)
T 2z81_A          437 DVSNNNLDS  445 (549)
T ss_dssp             ECCSSCCSC
T ss_pred             ECCCCChhh
Confidence            777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.4e-46  Score=423.30  Aligned_cols=456  Identities=20%  Similarity=0.206  Sum_probs=371.8

Q ss_pred             CEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCC
Q 044724           99 ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLE  178 (782)
Q Consensus        99 ~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  178 (782)
                      ++||+++|++++ +|..      +.  ++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+++..|.++++|+
T Consensus         3 ~~l~ls~n~l~~-ip~~------~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKD------LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSS-CCCS------CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCC
T ss_pred             ceEecCCCCccc-cccc------cc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCC
Confidence            579999999985 4432      43  89999999999999988899999999999999999998 45445899999999


Q ss_pred             EEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCcee
Q 044724          179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHF  257 (782)
Q Consensus       179 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l  257 (782)
                      +|+|++|+++.+  |..  .+++|++|++++  |.+.+ .+|..++.                   +++|++|++++|.+
T Consensus        73 ~L~Ls~N~l~~l--p~~--~l~~L~~L~L~~--N~l~~~~~p~~~~~-------------------l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           73 YLDLSHNKLVKI--SCH--PTVNLKHLDLSF--NAFDALPICKEFGN-------------------MSQLKFLGLSTTHL  127 (520)
T ss_dssp             EEECCSSCCCEE--ECC--CCCCCSEEECCS--SCCSSCCCCGGGGG-------------------CTTCCEEEEEESSC
T ss_pred             EEecCCCceeec--Ccc--ccCCccEEeccC--Cccccccchhhhcc-------------------CCcceEEEecCccc
Confidence            999999999975  555  899999999999  66555 45566655                   56667777788887


Q ss_pred             eeecCCCCcCCCCCC--cEEEccCCcc--ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCC-CCcEEEccCCc
Q 044724          258 RIPISPDPLFNHSRL--KIFHAYNNEI--HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK-SLRLLDVSNNN  332 (782)
Q Consensus       258 ~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~Ls~n~  332 (782)
                      ++    ..+..+++|  +.|++++|.+  .+..                           +..+..+. +...+++++|.
T Consensus       128 ~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~---------------------------~~~l~~l~~~~l~l~l~~n~  176 (520)
T 2z7x_B          128 EK----SSVLPIAHLNISKVLLVLGETYGEKED---------------------------PEGLQDFNTESLHIVFPTNK  176 (520)
T ss_dssp             CG----GGGGGGTTSCEEEEEEEECTTTTSSCC---------------------------TTTTTTCCEEEEEEECCSSS
T ss_pred             ch----hhccccccceeeEEEeecccccccccc---------------------------cccccccccceEEEEeccCc
Confidence            64    246777888  9999999987  3321                           22222222 34467899999


Q ss_pred             CCccCChhhhhcCCCCcEEEcccCc-------CcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc---CCC
Q 044724          333 FQGCIPVEIGDILPSLSCFNISMNA-------LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS---KCF  402 (782)
Q Consensus       333 l~~~ip~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~  402 (782)
                      +.+.++......+++|+.|++++|.       +.+.+| .+.        .+++|+.|++++|.+++..+..+.   ..+
T Consensus       177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--------~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  247 (520)
T 2z7x_B          177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--------TNPKLSNLTLNNIETTWNSFIRILQLVWHT  247 (520)
T ss_dssp             CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--------GCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred             chhhhhhhhhhcccceeeccccccccccccceeecchh-hhc--------cccchhhccccccccCHHHHHHHHHHhhhC
Confidence            9888887766668999999999997       555544 343        789999999999988864332221   246


Q ss_pred             CCcEEECcCCcccccCCccc-----cCcCCCCEEeCCCCccccCCC-hhccCC---CCCceEeccCCcceeeCCCCcccc
Q 044724          403 LLKGLYLNNNNLSGKIPQWL-----GNLTGLQHIIMPKNHLEGPIP-VEFCQL---DWLQILDISDNNISGSLPSCFHLL  473 (782)
Q Consensus       403 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~~  473 (782)
                      +|++|++++|++++.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....       
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-------  318 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-------  318 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-------
Confidence            89999999999999999988     8999999999999999  455 555554   67999999999986432       


Q ss_pred             chhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC--cCCcccccccccccccCCCCCCCCccccccc
Q 044724          474 SIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG--LIPPFFYNTALHESYNNNSSLDKPFEISFDF  551 (782)
Q Consensus       474 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (782)
                         ....+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..                       
T Consensus       319 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-----------------------  372 (520)
T 2z7x_B          319 ---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-----------------------  372 (520)
T ss_dssp             ---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-----------------------
T ss_pred             ---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-----------------------
Confidence               12578999999999999998899999999999999999999986  33444432                       


Q ss_pred             cccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcc-cccccccceeecccccccccCCccccCC
Q 044724          552 RNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPP-IGNLTRIQILNLSHNNLTGTIPSTFSKL  630 (782)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  630 (782)
                                                    +++|+.||+++|++++.+|.. +..+++|+.|++++|++++.+|..+.  
T Consensus       373 ------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--  420 (520)
T 2z7x_B          373 ------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--  420 (520)
T ss_dssp             ------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred             ------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence                                          568999999999999866654 88999999999999999998888775  


Q ss_pred             CCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          631 EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       631 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      ++|+.||+++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+.
T Consensus       421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            79999999999999 8898888999999999999999964444477888999999999999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.4e-44  Score=419.64  Aligned_cols=310  Identities=18%  Similarity=0.244  Sum_probs=260.2

Q ss_pred             ccCCCCCCCCcEEEccCCc-CCc-cCChhhhh------cCCCCcEEEcccCcCcccCCC--cccccccccCCCCCCCCEE
Q 044724          314 RLPIHSHKSLRLLDVSNNN-FQG-CIPVEIGD------ILPSLSCFNISMNALDGSIPS--SFEGHMFSKNFNLTNVRWL  383 (782)
Q Consensus       314 ~~~~~~~~~L~~L~Ls~n~-l~~-~ip~~~~~------~l~~L~~L~Ls~n~l~~~~p~--~~~g~~~~~~~~l~~L~~L  383 (782)
                      |..+.++++|+.|++++|+ ++| .+|..++.      .+++|+.|++++|.++ .+|.  .+.        ++++|++|
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~--------~L~~L~~L  578 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ--------KMVKLGLL  578 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT--------TCTTCCEE
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh--------cCCCCCEE
Confidence            3345567788888999887 887 78887765      1349999999999999 7777  666        79999999


Q ss_pred             EccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC-CCEEeCCCCccccCCChhccCCCC--CceEeccCC
Q 044724          384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG-LQHIIMPKNHLEGPIPVEFCQLDW--LQILDISDN  460 (782)
Q Consensus       384 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~Ls~N  460 (782)
                      ++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|++++|
T Consensus       579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            99999999 788 8999999999999999999 89999999999 999999999999 78888877755  999999999


Q ss_pred             cceeeCCCCccccchhhhc--CCCCCCEEEcCCCcceeecCcc-ccCCCCCCEEEccCCcCCCcCCcccccccccccccC
Q 044724          461 NISGSLPSCFHLLSIEQIN--GLSGLSHLILAHNNLEGEVPVQ-LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN  537 (782)
Q Consensus       461 ~l~~~~p~~~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  537 (782)
                      ++++.+|...     ..+.  .+++|+.|+|++|+++ .+|.. +..+++|+.|+|++|+++ .+|.........     
T Consensus       655 ~l~g~ip~l~-----~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~-----  722 (876)
T 4ecn_A          655 KIGSEGRNIS-----CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG-----  722 (876)
T ss_dssp             CTTTTSSSCS-----SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS-----
T ss_pred             cCCCccccch-----hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc-----
Confidence            9998776321     1122  4468999999999999 55554 458999999999999999 566543321100     


Q ss_pred             CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc--cccccceeecc
Q 044724          538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG--NLTRIQILNLS  615 (782)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls  615 (782)
                                                              ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|+
T Consensus       723 ----------------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          723 ----------------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             ----------------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECC
T ss_pred             ----------------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeC
Confidence                                                    0011558999999999999 7899887  99999999999


Q ss_pred             cccccccCCccccCCCCCCEEecCC------CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCC
Q 044724          616 HNNLTGTIPSTFSKLEAYRNLDLSY------NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGN  689 (782)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~LdLs~------N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gN  689 (782)
                      +|++++ +|..++++++|+.|+|++      |++.+.+|..+.++++|+.|++++|++ +.+|..+  +++++.+++++|
T Consensus       762 ~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N  837 (876)
T 4ecn_A          762 YNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN  837 (876)
T ss_dssp             SSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSC
T ss_pred             CCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCC
Confidence            999997 799999999999999977      889999999999999999999999999 7888743  368999999999


Q ss_pred             CCCC
Q 044724          690 PFLC  693 (782)
Q Consensus       690 p~lC  693 (782)
                      |+..
T Consensus       838 ~l~~  841 (876)
T 4ecn_A          838 PNIS  841 (876)
T ss_dssp             TTCE
T ss_pred             CCCc
Confidence            9765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.3e-43  Score=403.05  Aligned_cols=459  Identities=18%  Similarity=0.174  Sum_probs=305.2

Q ss_pred             EEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCC
Q 044724           70 IQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRL  149 (782)
Q Consensus        70 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  149 (782)
                      +.+|++++++..+.     ...   .++|++|+|++|.+++..+.      .|.++++|++|+|++|.+++..|..|.++
T Consensus        34 ~~l~ls~~~L~~ip-----~~~---~~~L~~L~Ls~N~i~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           34 SMVDYSNRNLTHVP-----KDL---PPRTKALSLSQNSISELRMP------DISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             CEEECTTSCCCSCC-----TTS---CTTCCEEECCSSCCCCCCGG------GTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             cEEEcCCCCCccCC-----CCC---CCCcCEEECCCCCccccChh------hhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            67889888775332     222   27899999999998866554      38889999999999999998888889999


Q ss_pred             CCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCC
Q 044724          150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSL  229 (782)
Q Consensus       150 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L  229 (782)
                      ++|++|+|++|.++ .+|..   .+++|++|++++|++++...|..|+++++|++|++++  +.+.+.   .+.. +++ 
T Consensus       100 ~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~--n~l~~~---~~~~-l~~-  168 (562)
T 3a79_B          100 QDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA--AKFRQL---DLLP-VAH-  168 (562)
T ss_dssp             TTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC--SBCCTT---TTGG-GTT-
T ss_pred             CCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCC--CccccC---chhh-hhh-
Confidence            99999999999998 78863   7899999999999998865467888899999999998  444331   1111 111 


Q ss_pred             CeEeCCCCCCCCCCCCCCCeEEccCcee--eeecCCCCcCCCCC-CcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724          230 KHLSLSNFSPSNDSWTLNQVLWLSNNHF--RIPISPDPLFNHSR-LKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS  306 (782)
Q Consensus       230 ~~L~L~~~ip~~~~l~~L~~L~Ls~n~l--~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  306 (782)
                                    + +|+.|++++|.+  ++..+. .+..++. .-.++++.|.+                        
T Consensus       169 --------------L-~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~------------------------  208 (562)
T 3a79_B          169 --------------L-HLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSL------------------------  208 (562)
T ss_dssp             --------------S-CEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSC------------------------
T ss_pred             --------------c-eeeEEEeecccccccccCcc-cccccCcceEEEEecCccc------------------------
Confidence                          1 237777777777  543332 2333220 01223333333                        


Q ss_pred             CCCCCCC-ccCCCCCCCCcEEEccCCcC-----CccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCC
Q 044724          307 GYGDGPF-RLPIHSHKSLRLLDVSNNNF-----QGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNV  380 (782)
Q Consensus       307 n~~~~~~-~~~~~~~~~L~~L~Ls~n~l-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L  380 (782)
                         .+.. ...+..+++|+.+++++|+.     .+. +..+.. +++|+.++++++.+.+.....+..    .. ..++|
T Consensus       209 ---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~----~~-~~~~L  278 (562)
T 3a79_B          209 ---FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTR-GPTLLNVTLQHIETTWKCSVKLFQ----FF-WPRPV  278 (562)
T ss_dssp             ---CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHS-CSSCEEEEEEEEEECHHHHHHHHH----HH-TTSSE
T ss_pred             ---hhhhhhhcccccceEEEecccccccccchHHHH-HHHHhc-cCcceEEEecCCcCcHHHHHHHHH----hh-hcccc
Confidence               2211 12334667888888888752     211 223333 678888888877765432111110    00 23578


Q ss_pred             CEEEccCccccccCCccc-----cCCCCCcEEECcCCcccccCC-ccccCc---CCCCEEeCCCCccccCCChhccCCCC
Q 044724          381 RWLLLEENHFVGEIPQSL-----SKCFLLKGLYLNNNNLSGKIP-QWLGNL---TGLQHIIMPKNHLEGPIPVEFCQLDW  451 (782)
Q Consensus       381 ~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~  451 (782)
                      ++|++++|.++|.+|..+     ..++.|+.++++.|.+  .+| ..+..+   .+|++|++++|.+....  ....+++
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~  354 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS  354 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence            888888888887777766     5666666666666666  344 233222   56788888887765322  1256777


Q ss_pred             CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCccee--ecCccccCCCCCCEEEccCCcCCCcCCcc-ccc
Q 044724          452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG--EVPVQLCGLNQLQLLDLSDNNLHGLIPPF-FYN  528 (782)
Q Consensus       452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~  528 (782)
                      |++|++++|++++.+|        ..++.+++|++|++++|++++  ..|..+..+++|++|++++|++++.+|.. +..
T Consensus       355 L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  426 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVF--------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW  426 (562)
T ss_dssp             CCEEECCSSCCCTTTT--------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred             ceEEECCCCccccchh--------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence            8888888888777666        456677778888888887775  23456777778888888888777655543 211


Q ss_pred             ccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccc
Q 044724          529 TALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTR  608 (782)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  608 (782)
                                                                           +++|+.|++++|++++.+|..+.  ++
T Consensus       427 -----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          427 -----------------------------------------------------AESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             -----------------------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             -----------------------------------------------------cccCCEEECCCCCCCcchhhhhc--Cc
Confidence                                                                 44677777777777776666554  57


Q ss_pred             cceeecccccccccCCccccCCCCCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCcccCC
Q 044724          609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       609 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~~p  672 (782)
                      |++|+|++|+++ .+|..+.++++|++|+|++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus       452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            777777777777 56666667777777777777777 45544 7777777777777777776555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-42  Score=398.64  Aligned_cols=459  Identities=22%  Similarity=0.219  Sum_probs=354.9

Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF  174 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  174 (782)
                      +...+++|+++|++++ +|..      +.  ++|++|+|++|.+++..+..|.++++|++|+|++|.++ .+++..|.++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~------~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   99 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKD------LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFN   99 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTT------SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTC
T ss_pred             cCCCcEEEcCCCCCcc-CCCC------CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCC
Confidence            3345899999999986 4432      32  89999999999999988899999999999999999998 5555589999


Q ss_pred             CCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccc-cchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724          175 NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNT-NFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS  253 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls  253 (782)
                      ++|++|+|++|+++.+  |..  .+++|++|++++  |.+.+ .+|..+..                   +++|++|+++
T Consensus       100 ~~L~~L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~--N~l~~l~~p~~~~~-------------------l~~L~~L~L~  154 (562)
T 3a79_B          100 QDLEYLDVSHNRLQNI--SCC--PMASLRHLDLSF--NDFDVLPVCKEFGN-------------------LTKLTFLGLS  154 (562)
T ss_dssp             TTCCEEECTTSCCCEE--CSC--CCTTCSEEECCS--SCCSBCCCCGGGGG-------------------CTTCCEEEEE
T ss_pred             CCCCEEECCCCcCCcc--Ccc--ccccCCEEECCC--CCccccCchHhhcc-------------------cCcccEEecC
Confidence            9999999999999965  555  899999999999  55544 33445544                   5666777778


Q ss_pred             CceeeeecCCCCcCCCCCC--cEEEccCCcc--ceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCC-CCcEEEc
Q 044724          254 NNHFRIPISPDPLFNHSRL--KIFHAYNNEI--HAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK-SLRLLDV  328 (782)
Q Consensus       254 ~n~l~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~L  328 (782)
                      +|.+++    ..+..+++|  ++|++++|.+  .+..+                           ..+..+. ..-.+++
T Consensus       155 ~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~---------------------------~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          155 AAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGET---------------------------ESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSC---------------------------CEEEECCEEEEEEEE
T ss_pred             CCcccc----CchhhhhhceeeEEEeecccccccccCc---------------------------ccccccCcceEEEEe
Confidence            887764    235566666  9999999987  43221                           1111111 1225688


Q ss_pred             cCCcCCccCChhhhhcCCCCcEEEcccCcC-----cccCCCcccccccccCCCCCCCCEEEccCccccccC----Ccccc
Q 044724          329 SNNNFQGCIPVEIGDILPSLSCFNISMNAL-----DGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEI----PQSLS  399 (782)
Q Consensus       329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l-----~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~  399 (782)
                      ++|.+.+.++......+++|+.+++++|..     .+.+ ..+.        .++.|+.++++++.+.+..    +..+ 
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~--------~l~~L~~L~L~~~~l~~~~~~~~~~~~-  273 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELT--------RGPTLLNVTLQHIETTWKCSVKLFQFF-  273 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHH--------SCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHh--------ccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence            999998888876666688999999999852     1111 1222        6788899998888776432    2222 


Q ss_pred             CCCCCcEEECcCCcccccCCccc-----cCcCCCCEEeCCCCccccCCC-hhccC---CCCCceEeccCCcceeeCCCCc
Q 044724          400 KCFLLKGLYLNNNNLSGKIPQWL-----GNLTGLQHIIMPKNHLEGPIP-VEFCQ---LDWLQILDISDNNISGSLPSCF  470 (782)
Q Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~  470 (782)
                      ...+|++|++++|.+++.+|..+     ..++.|+.++++.|.+  .+| ..+..   ..+|++|++++|.+....    
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~----  347 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV----  347 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC----
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc----
Confidence            23589999999999999999887     7777777778877777  344 33322   267999999999986321    


Q ss_pred             cccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcC--CcccccccccccccCCCCCCCCcccc
Q 044724          471 HLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI--PPFFYNTALHESYNNNSSLDKPFEIS  548 (782)
Q Consensus       471 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~  548 (782)
                            ....+++|++|++++|++++..|..+.++++|++|++++|++++..  |..+..                    
T Consensus       348 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------  401 (562)
T 3a79_B          348 ------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN--------------------  401 (562)
T ss_dssp             ------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------------
T ss_pred             ------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------------
Confidence                  1257899999999999999889999999999999999999998632  222322                    


Q ss_pred             ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc-ccccccccceeecccccccccCCccc
Q 044724          549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTF  627 (782)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~  627 (782)
                                                       +++|+.|++++|++++.+|. .+..+++|++|+|++|++++.+|..+
T Consensus       402 ---------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  448 (562)
T 3a79_B          402 ---------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL  448 (562)
T ss_dssp             ---------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred             ---------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence                                             56899999999999985665 58899999999999999998888766


Q ss_pred             cCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          628 SKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       628 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      .  ++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+.
T Consensus       449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            5  79999999999999 7888888999999999999999964444477888999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-39  Score=377.10  Aligned_cols=468  Identities=21%  Similarity=0.169  Sum_probs=329.2

Q ss_pred             CCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEE
Q 044724          126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHL  205 (782)
Q Consensus       126 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  205 (782)
                      +++++|||++|.|++..+.+|.++++|++|+|++|+++ .+|+++|.++++|++|+|++|++++.. +..|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEE
Confidence            47999999999999888889999999999999999998 788778999999999999999999885 6789999999999


Q ss_pred             ecccCcccccccchHHHhhcCCCCCeEeCCC------CCCC-CCCCCCCCeEEccCceeeeecCCCCcCCCCC----CcE
Q 044724          206 DMSYAHIALNTNFLQIIGESMPSLKHLSLSN------FSPS-NDSWTLNQVLWLSNNHFRIPISPDPLFNHSR----LKI  274 (782)
Q Consensus       206 ~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~------~ip~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~----L~~  274 (782)
                      ++++  |.+.+..+..++. +++|++|++++      .+|. ++.++.|+.|++++|++++..+ ..+..+++    ...
T Consensus       130 ~Ls~--N~l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          130 VAVE--TNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLS  205 (635)
T ss_dssp             ECTT--SCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCCE
T ss_pred             ECCC--CcCCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhhhhhh
Confidence            9999  5555544444554 66666666554      1122 3445555555555555543222 22322222    223


Q ss_pred             EEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcc
Q 044724          275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS  354 (782)
Q Consensus       275 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls  354 (782)
                      ++++.|.+...                           .+..+ ....++.+++.+|.....++......++.++...+.
T Consensus       206 ~~ls~n~l~~i---------------------------~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~  257 (635)
T 4g8a_A          206 LDLSLNPMNFI---------------------------QPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  257 (635)
T ss_dssp             EECTTCCCCEE---------------------------CTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred             hhcccCccccc---------------------------Ccccc-cchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence            44444444433                           22222 122334445544443333322222223444433332


Q ss_pred             cCcCccc------CCCcc-------------------cccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEEC
Q 044724          355 MNALDGS------IPSSF-------------------EGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYL  409 (782)
Q Consensus       355 ~n~l~~~------~p~~~-------------------~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  409 (782)
                      .+.....      ....+                   ...++.......+++.+++.++.+....  .+.....|+.|++
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l  335 (635)
T 4g8a_A          258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL  335 (635)
T ss_dssp             EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence            2211100      00000                   0011111224667888888888776433  3566678899999


Q ss_pred             cCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc
Q 044724          410 NNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL  489 (782)
Q Consensus       410 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L  489 (782)
                      .+|.+.+..+.   .+..|+.+++..|.+...  .....+++|+.+++++|.+....+..      ..+..+.+|+++++
T Consensus       336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~------~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS------QSDFGTISLKYLDL  404 (635)
T ss_dssp             ESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECC------HHHHSCSCCCEEEC
T ss_pred             ccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccc------cchhhhhhhhhhhc
Confidence            99888755443   456788888888876643  33457889999999999886432211      45667888999999


Q ss_pred             CCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEE
Q 044724          490 AHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFT  569 (782)
Q Consensus       490 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (782)
                      ..|.+.. .+..+..+++|+.+++++|+.....+....                                          
T Consensus       405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~------------------------------------------  441 (635)
T 4g8a_A          405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------------------------------------------  441 (635)
T ss_dssp             CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT------------------------------------------
T ss_pred             ccccccc-ccccccccccccchhhhhcccccccccccc------------------------------------------
Confidence            9998874 455688899999999998887655443211                                          


Q ss_pred             ecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccc-cccCCccccCCCCCCEEecCCCccccCCc
Q 044724          570 TKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNL-TGTIPSTFSKLEAYRNLDLSYNKLNGKIP  648 (782)
Q Consensus       570 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  648 (782)
                                ..+++++.+++++|.+.+..|..+..++.|+.|+|++|++ .+.+|..|..+++|++|||++|+|++.+|
T Consensus       442 ----------~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~  511 (635)
T 4g8a_A          442 ----------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  511 (635)
T ss_dssp             ----------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ----------ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence                      1156789999999999999999999999999999999985 45688999999999999999999999999


Q ss_pred             hhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724          649 RQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       649 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      ..|.++++|++|+|++|+|++..|..+..+++++.+++++|...-
T Consensus       512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            999999999999999999999999878889999999999998554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.9e-39  Score=356.51  Aligned_cols=374  Identities=22%  Similarity=0.187  Sum_probs=283.5

Q ss_pred             CCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcc-hhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724           96 QQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSI-LSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF  174 (782)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  174 (782)
                      ++|++|+|++|.+++..+..      |+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..| ..|.++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETS------FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGL  102 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTT------TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTC
T ss_pred             CccCEEEecCCccCcCChhH------hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCc
Confidence            67888888888887765553      888888888888888887544 5678888888888888888874444 378888


Q ss_pred             CCCCEEEcccCCCCCcc-CCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724          175 NNLEVLDMKRNEIDNLV-VPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS  253 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls  253 (782)
                      ++|++|++++|.+++.. ....+.++++|++|++++  |.+.+..|..+                  +..+++|++|+++
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~------------------~~~l~~L~~L~L~  162 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPASF------------------FLNMRRFHVLDLT  162 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS--SBCCSCCCCGG------------------GGGCTTCCEEECT
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCC--CccCccCcccc------------------cCCCCcccEEeCC
Confidence            88888888888887643 123478888888888888  55555444431                  1234556666677


Q ss_pred             CceeeeecCCCCcCCC--CCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724          254 NNHFRIPISPDPLFNH--SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN  331 (782)
Q Consensus       254 ~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n  331 (782)
                      +|.+++..+ ..+..+  .+|+.+++++|.+.+..+...                   .......+..+++|++|++++|
T Consensus       163 ~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          163 FNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWL-------------------GWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             TCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCT-------------------THHHHCCTTTTCEEEEEECTTS
T ss_pred             CCcccccCh-hhhhccccccccccccccCcccccchhhc-------------------cccccccccccceeeeEecCCC
Confidence            777765443 334443  466666666666553321100                   0000112335678999999999


Q ss_pred             cCCccCChhhhhc--CCCCcEEEcccCcCcccCCCc--ccccccccC--CCCCCCCEEEccCccccccCCccccCCCCCc
Q 044724          332 NFQGCIPVEIGDI--LPSLSCFNISMNALDGSIPSS--FEGHMFSKN--FNLTNVRWLLLEENHFVGEIPQSLSKCFLLK  405 (782)
Q Consensus       332 ~l~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~p~~--~~g~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  405 (782)
                      ++++.+|..+...  .++|+.|++++|...+.....  +.+.....+  ...++|++|++++|.+++..|..+..+++|+
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  302 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE  302 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence            9998888877653  278999999998765432211  000000000  0347899999999999999999999999999


Q ss_pred             EEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCC
Q 044724          406 GLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLS  485 (782)
Q Consensus       406 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~  485 (782)
                      +|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..|        ..+..+++|+
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~  374 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD--------QSFLGLPNLK  374 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh--------hhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999998888        5678899999


Q ss_pred             EEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCc
Q 044724          486 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPP  524 (782)
Q Consensus       486 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  524 (782)
                      +|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999987777889999999999999999999884

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.1e-39  Score=357.72  Aligned_cols=405  Identities=22%  Similarity=0.271  Sum_probs=214.1

Q ss_pred             CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCC-------------CEEEccCC
Q 044724           94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSV-------------RSLKLSYN  160 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~Ls~n  160 (782)
                      +.++|++|++++|++ |.+|.+      ++++++|++|++++|.+++.+|..++++++|             ++|++++|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~------i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVE------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             ccccchhhhcccCch-hhCChh------HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            357888888888888 677764      8888888888888888888888888888765             77888888


Q ss_pred             cCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCC
Q 044724          161 RLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPS  240 (782)
Q Consensus       161 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~  240 (782)
                      .++ .+|.    -.++|++|++++|.+++.  |..   .++|++|++++  +.+.+ ++                    .
T Consensus        82 ~l~-~lp~----~~~~L~~L~l~~n~l~~l--p~~---~~~L~~L~l~~--n~l~~-l~--------------------~  128 (454)
T 1jl5_A           82 GLS-SLPE----LPPHLESLVASCNSLTEL--PEL---PQSLKSLLVDN--NNLKA-LS--------------------D  128 (454)
T ss_dssp             CCS-CCCS----CCTTCSEEECCSSCCSSC--CCC---CTTCCEEECCS--SCCSC-CC--------------------S
T ss_pred             ccc-cCCC----CcCCCCEEEccCCcCCcc--ccc---cCCCcEEECCC--CccCc-cc--------------------C
Confidence            777 4553    136778888888877774  433   36777777777  33322 00                    0


Q ss_pred             CCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCC
Q 044724          241 NDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSH  320 (782)
Q Consensus       241 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  320 (782)
                      .  .++|++|++++|.+++ +|  .++++++|++|++++|++++.+.                               ..
T Consensus       129 ~--~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~lp~-------------------------------~~  172 (454)
T 1jl5_A          129 L--PPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKKLPD-------------------------------LP  172 (454)
T ss_dssp             C--CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSCCCC-------------------------------CC
T ss_pred             C--CCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcccCC-------------------------------Cc
Confidence            0  1467777778888774 65  37788888888888877654211                               01


Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++|++|++++|++++ +| .+.. +++|+.|++++|.+++ +|.           ..++|++|++++|.++ .+| .+..
T Consensus       173 ~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~-----------~~~~L~~L~l~~n~l~-~lp-~~~~  235 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPD-----------LPLSLESIVAGNNILE-ELP-ELQN  235 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCC-----------CCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred             ccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCC-----------CcCcccEEECcCCcCC-ccc-ccCC
Confidence            356667777776663 55 3444 6677777777776654 222           1246677777777766 455 3666


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|++|++++|++++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++. |.           .
T Consensus       236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-----------~  295 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-----------L  295 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-----------C
T ss_pred             CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-----------c
Confidence            7777777777777764 3332   3567777777777765 3332   36677777777777652 21           1


Q ss_pred             CCCCCEEEcCCCcceeecCccccCC-CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGL-NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      .++|++|++++|++++. +    .+ ++|++|++++|++++ +|..                                  
T Consensus       296 ~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~----------------------------------  335 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL----------------------------------  335 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------------
T ss_pred             CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------------
Confidence            15677777777777642 2    22 467777777777765 3321                                  


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccc--cCCccccCCCCCCEEe
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG--TIPSTFSKLEAYRNLD  637 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~Ld  637 (782)
                                            +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++.        
T Consensus       336 ----------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------  381 (454)
T 1jl5_A          336 ----------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------  381 (454)
T ss_dssp             ----------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------
T ss_pred             ----------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------
Confidence                                  235677777777777 3555   35677777777777776  56655543        


Q ss_pred             cCCCccccCCchhhhcCCCCcEEEcccCcCcc--cCCCCccccCCCCcccccCCCCCCC
Q 044724          638 LSYNKLNGKIPRQLVELNAFVVFSFACNNLSG--KIPELTAQFATFNESSYKGNPFLCG  694 (782)
Q Consensus       638 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~~~gNp~lC~  694 (782)
                      ++.|++.|.+|..   +++|++|++++|++++  .+|.      ++..+.+.+|...|.
T Consensus       382 L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          382 LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP  431 (454)
T ss_dssp             EECCC------------------------------------------------------
T ss_pred             hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence            2346666666653   4678888888888887  5664      344555666655553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-39  Score=359.66  Aligned_cols=387  Identities=23%  Similarity=0.294  Sum_probs=242.0

Q ss_pred             CCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCC-------------CEEEcccCCCCCc
Q 044724          124 RLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNL-------------EVLDMKRNEIDNL  190 (782)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L-------------~~L~Ls~n~l~~~  190 (782)
                      +.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|. .++.+++|             ++|++++|.+++.
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence            457888888888888 67888888888888888888888878886 77777765             5555555554443


Q ss_pred             cCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCC
Q 044724          191 VVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHS  270 (782)
Q Consensus       191 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  270 (782)
                        |..   .++|++|+++                                             +|.+++ +|.    ..+
T Consensus        87 --p~~---~~~L~~L~l~---------------------------------------------~n~l~~-lp~----~~~  111 (454)
T 1jl5_A           87 --PEL---PPHLESLVAS---------------------------------------------CNSLTE-LPE----LPQ  111 (454)
T ss_dssp             --CSC---CTTCSEEECC---------------------------------------------SSCCSS-CCC----CCT
T ss_pred             --CCC---cCCCCEEEcc---------------------------------------------CCcCCc-ccc----ccC
Confidence              221   1344444444                                             444443 332    124


Q ss_pred             CCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcE
Q 044724          271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSC  350 (782)
Q Consensus       271 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  350 (782)
                      +|++|++++|.+.+...      . ..+|++|++++|.+.+ +| .++.+++|++|++++|+++ .+|..    .++|++
T Consensus       112 ~L~~L~l~~n~l~~l~~------~-~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~  177 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSD------L-PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEF  177 (454)
T ss_dssp             TCCEEECCSSCCSCCCS------C-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCE
T ss_pred             CCcEEECCCCccCcccC------C-CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccE
Confidence            55555555555543210      0 1356666666666665 34 4778899999999999998 47753    468999


Q ss_pred             EEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCE
Q 044724          351 FNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQH  430 (782)
Q Consensus       351 L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  430 (782)
                      |++++|.+++ +| .+.        ++++|++|++++|.+++ +|...   ++|++|++++|.++ .+| .++.+++|++
T Consensus       178 L~L~~n~l~~-l~-~~~--------~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~  241 (454)
T 1jl5_A          178 IAAGNNQLEE-LP-ELQ--------NLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTT  241 (454)
T ss_dssp             EECCSSCCSS-CC-CCT--------TCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCE
T ss_pred             EECcCCcCCc-Cc-ccc--------CCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCE
Confidence            9999999986 44 344        78999999999999986 44332   58999999999998 666 4889999999


Q ss_pred             EeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCE
Q 044724          431 IIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQL  510 (782)
Q Consensus       431 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  510 (782)
                      |++++|++++ +|..   .++|++|++++|++++ +|.           ..++|++|++++|++++. |..   .++|++
T Consensus       242 L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~-----------~~~~L~~L~ls~N~l~~l-~~~---~~~L~~  301 (454)
T 1jl5_A          242 IYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE-----------LPQSLTFLDVSENIFSGL-SEL---PPNLYY  301 (454)
T ss_dssp             EECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC-----------CCTTCCEEECCSSCCSEE-SCC---CTTCCE
T ss_pred             EECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc-----------ccCcCCEEECcCCccCcc-cCc---CCcCCE
Confidence            9999999986 4432   4789999999999985 552           247899999999999863 221   268999


Q ss_pred             EEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeec
Q 044724          511 LDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDL  590 (782)
Q Consensus       511 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  590 (782)
                      |++++|++++. +..                                                        .++|+.|++
T Consensus       302 L~l~~N~l~~i-~~~--------------------------------------------------------~~~L~~L~L  324 (454)
T 1jl5_A          302 LNASSNEIRSL-CDL--------------------------------------------------------PPSLEELNV  324 (454)
T ss_dssp             EECCSSCCSEE-CCC--------------------------------------------------------CTTCCEEEC
T ss_pred             EECcCCcCCcc-cCC--------------------------------------------------------cCcCCEEEC
Confidence            99999988752 110                                                        236889999


Q ss_pred             cCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcccc--CCchhhhcCCCCcEEEcccCcCc
Q 044724          591 SCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG--KIPRQLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       591 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~  668 (782)
                      ++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.++.+        ++.|++.
T Consensus       325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~  388 (454)
T 1jl5_A          325 SNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHL  388 (454)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--
T ss_pred             CCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccc
Confidence            9999996 6664   578999999999999 4666   47899999999999998  67776543        4568888


Q ss_pred             ccCCCCccccCCCCcccccCCCCCC
Q 044724          669 GKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       669 ~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      |.+|..   +++++.+++++|+...
T Consensus       389 ~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          389 AEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -------------------------
T ss_pred             cccccc---cCcCCEEECCCCcCCc
Confidence            888873   5788899999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.9e-39  Score=360.80  Aligned_cols=374  Identities=20%  Similarity=0.211  Sum_probs=287.9

Q ss_pred             CeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCC-ccCCCCCCCCcEE
Q 044724          248 QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPF-RLPIHSHKSLRLL  326 (782)
Q Consensus       248 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L  326 (782)
                      +.++.+++.++ .+|.    -.++|++|++++|.+.+..+..   +....+|++|++++|.+.+.+ +..+..+++|++|
T Consensus        13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A           13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETS---FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTT---TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhH---hccCccccEEECcCCcccceECcccccccccCCEE
Confidence            45677777665 4553    2267888999988887764432   345567888888888776544 4567778888888


Q ss_pred             EccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCc--ccccccccCCCCCCCCEEEccCccccccCCcc-ccCCCC
Q 044724          327 DVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSS--FEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS-LSKCFL  403 (782)
Q Consensus       327 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~  403 (782)
                      ++++|++++..|..+.. +++|++|++++|.+++..+..  +.        ++++|++|++++|.+++..|.. +..+++
T Consensus        85 ~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFK--------PLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             ECTTCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTT--------TCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             eCCCCccCccChhhccC-cccCCEEeCCCCCCCccccCccccc--------CcccCCEEECCCCccCccCcccccCCCCc
Confidence            88888887666666665 788888888888887644332  43        6788888888888888776665 677888


Q ss_pred             CcEEECcCCcccccCCccccCc--CCCCEEeCCCCccccCCChh--------ccCCCCCceEeccCCcceeeCCCCcccc
Q 044724          404 LKGLYLNNNNLSGKIPQWLGNL--TGLQHIIMPKNHLEGPIPVE--------FCQLDWLQILDISDNNISGSLPSCFHLL  473 (782)
Q Consensus       404 L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  473 (782)
                      |++|++++|.+++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++++..|..+   
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---  232 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF---  232 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH---
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh---
Confidence            8888888888887777777665  67888888888877654433        2355778888888888877766322   


Q ss_pred             chhhhcCCCCCCEEEcCCCcceeec----------CccccC--CCCCCEEEccCCcCCCcCCcccccccccccccCCCCC
Q 044724          474 SIEQINGLSGLSHLILAHNNLEGEV----------PVQLCG--LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSL  541 (782)
Q Consensus       474 ~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  541 (782)
                        ......++|+.|++++|.+.+..          +..+..  .++|++|++++|++++.+|..+..             
T Consensus       233 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------------  297 (455)
T 3v47_A          233 --FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-------------  297 (455)
T ss_dssp             --HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-------------
T ss_pred             --hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-------------
Confidence              11223477888888877554321          112222  357888888888888777766543             


Q ss_pred             CCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccc
Q 044724          542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTG  621 (782)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  621 (782)
                                                              +++|+.|++++|++++..|..|+++++|++|+|++|++++
T Consensus       298 ----------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          298 ----------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ----------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence                                                    5589999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          622 TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       622 ~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++.+||+.|+|+
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999999999999999999999999999999999888767889999999999999999987

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-39  Score=344.22  Aligned_cols=151  Identities=25%  Similarity=0.471  Sum_probs=103.9

Q ss_pred             CCCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCCc--ccceEecCCC--CCEEEEEcCCCCCccccccccCccccc
Q 044724           18 EGCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQ--WANVECNNTT--GRVIQLYLSNTRSMELEEWYLNAYLFT   93 (782)
Q Consensus        18 ~~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~--w~gv~C~~~~--~~V~~L~L~~~~~~~~~~~~~~~~~~~   93 (782)
                      +.|.++|++||++||+++.||. .+++|..   +++||.  |.||+|+..+  ++|++|+|+++.+              
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--------------   62 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--------------   62 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--------------
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCc--------------
Confidence            3699999999999999998876 7899975   578998  9999998644  6788777766544              


Q ss_pred             CCCCCCEEeCCCCCCCC--ccCCCCcccccccCCCCCcEEeCCC-CCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724           94 PFQQLESLSLSANNIAG--CVENEGASSREVTRLNNLKMFDLSG-NSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE  170 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~  170 (782)
                                     ++  .+|.      .+.++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+++.+|. .
T Consensus        63 ---------------~~~~~~~~------~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~  120 (313)
T 1ogq_A           63 ---------------PKPYPIPS------SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-F  120 (313)
T ss_dssp             ---------------SSCEECCG------GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-G
T ss_pred             ---------------cCCcccCh------hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-H
Confidence                           33  2332      266667777777763 666666666677777777777777777655664 5


Q ss_pred             hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEeccc
Q 044724          171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY  209 (782)
Q Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~  209 (782)
                      |.++++|++|++++|.+++.. |..+..+++|++|++++
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDG  158 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCS
T ss_pred             HhCCCCCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcC
Confidence            666666666666666665443 44444444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7e-37  Score=339.18  Aligned_cols=355  Identities=16%  Similarity=0.183  Sum_probs=204.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhh
Q 044724           92 FTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEF  171 (782)
Q Consensus        92 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~  171 (782)
                      ++++++|++|++++|.+++. |.       ++.+++|++|+|++|.+++. |  ++.+++|++|++++|.+++ +|   +
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~~-------l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~  102 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-TG-------IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---V  102 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-TT-------GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---C
T ss_pred             hhHcCCCCEEEccCCCcccC-hh-------hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---c
Confidence            45667777777777776653 21       66677777777777777653 2  6666777777777777663 33   5


Q ss_pred             cCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEE
Q 044724          172 DSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLW  251 (782)
Q Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~  251 (782)
                      +++++|++|++++|++++.  +  ++.+++|++|++++  |.                                      
T Consensus       103 ~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~--N~--------------------------------------  138 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCAR--NT--------------------------------------  138 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTT--SC--------------------------------------
T ss_pred             CCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCC--Cc--------------------------------------
Confidence            6666777777777766653  2  55666666666665  32                                      


Q ss_pred             ccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCC
Q 044724          252 LSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNN  331 (782)
Q Consensus       252 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n  331 (782)
                           +++ ++   ++++++|++|++++|...+.                             ..+..+++|+.|++++|
T Consensus       139 -----l~~-l~---l~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          139 -----LTE-ID---VSHNTQLTELDCHLNKKITK-----------------------------LDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             -----CSC-CC---CTTCTTCCEEECTTCSCCCC-----------------------------CCCTTCTTCCEEECCSS
T ss_pred             -----cce-ec---cccCCcCCEEECCCCCcccc-----------------------------cccccCCcCCEEECCCC
Confidence                 221 11   33334444444444422111                             01223455666666666


Q ss_pred             cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcC
Q 044724          332 NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNN  411 (782)
Q Consensus       332 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  411 (782)
                      ++++ +|  +.. +++|+.|++++|.+++.   .+.        .+++|++|++++|++++ +|  +..+++|++|++++
T Consensus       181 ~l~~-l~--l~~-l~~L~~L~l~~N~l~~~---~l~--------~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          181 KITE-LD--VSQ-NKLLNRLNCDTNNITKL---DLN--------QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCCC-CC--CTT-CTTCCEEECCSSCCSCC---CCT--------TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             ccce-ec--ccc-CCCCCEEECcCCcCCee---ccc--------cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            6653 44  333 55666666666665543   122        45666666666666665 33  55566666666666


Q ss_pred             CcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCC
Q 044724          412 NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH  491 (782)
Q Consensus       412 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~  491 (782)
                      |++++..   ++.+++|+.|++++|              +|+.|++++|++.+.+|          ++.+++|+.|++++
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~Ls~  295 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ----------AEGCRKIKELDVTH  295 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE----------CTTCTTCCCCCCTT
T ss_pred             CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc----------ccccccCCEEECCC
Confidence            6666432   334555666655543              24455666666555544          23455666666666


Q ss_pred             CcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEec
Q 044724          492 NNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK  571 (782)
Q Consensus       492 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (782)
                      |...+.+|.   ..++|+.|++++|                                                       
T Consensus       296 n~~l~~l~~---~~~~L~~L~l~~~-------------------------------------------------------  317 (457)
T 3bz5_A          296 NTQLYLLDC---QAAGITELDLSQN-------------------------------------------------------  317 (457)
T ss_dssp             CTTCCEEEC---TTCCCSCCCCTTC-------------------------------------------------------
T ss_pred             Ccccceecc---CCCcceEechhhc-------------------------------------------------------
Confidence            655555443   2334444444433                                                       


Q ss_pred             CCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhh
Q 044724          572 SNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQL  651 (782)
Q Consensus       572 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l  651 (782)
                                 ++|+.|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|+++|.     
T Consensus       318 -----------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----  370 (457)
T 3bz5_A          318 -----------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----  370 (457)
T ss_dssp             -----------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----
T ss_pred             -----------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----
Confidence                       2466777777777763 2  7777777777777777775        23556667777777765     


Q ss_pred             hcCCCCcEEEcccCcCcccCCC
Q 044724          652 VELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       652 ~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      .++..|..+++++|+++|.+|.
T Consensus       371 ~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          371 GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             EEEEECCCBCCBTTBEEEECCT
T ss_pred             ceeeecCccccccCcEEEEcCh
Confidence            2344566677888888887776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.2e-36  Score=332.92  Aligned_cols=312  Identities=20%  Similarity=0.194  Sum_probs=199.5

Q ss_pred             CCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc
Q 044724           67 GRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL  146 (782)
Q Consensus        67 ~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  146 (782)
                      .+++.|+++++.+...     +  .|..+++|++|++++|++++. +        ++.+++|++|+|++|.+++. +  +
T Consensus        42 ~~L~~L~Ls~n~l~~~-----~--~l~~l~~L~~L~Ls~n~l~~~-~--------~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-----T--GIEKLTGLTKLICTSNNITTL-D--------LSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             TTCCEEECCSSCCCCC-----T--TGGGCTTCSEEECCSSCCSCC-C--------CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             CCCCEEEccCCCcccC-----h--hhcccCCCCEEEccCCcCCeE-c--------cccCCCCCEEECcCCCCcee-e--c
Confidence            4689999999987532     1  478899999999999999864 2        78899999999999999974 3  8


Q ss_pred             CCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcC
Q 044724          147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM  226 (782)
Q Consensus       147 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l  226 (782)
                      +++++|++|++++|.++ .+|   ++.+++|++|++++|++++.  +  ++++++|++|++++  |...+.++       
T Consensus       103 ~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~--n~~~~~~~-------  165 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHL--NKKITKLD-------  165 (457)
T ss_dssp             TTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTT--CSCCCCCC-------
T ss_pred             CCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee--c--cccCCcCCEEECCC--CCcccccc-------
Confidence            99999999999999998 465   78999999999999999985  2  78889999999998  32222210       


Q ss_pred             CCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724          227 PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS  306 (782)
Q Consensus       227 ~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  306 (782)
                                    +..+++|+.|++++|.+++ ++   +..+++|+.|++++|.+++.                     
T Consensus       166 --------------~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---------------------  206 (457)
T 3bz5_A          166 --------------VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---------------------  206 (457)
T ss_dssp             --------------CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---------------------
T ss_pred             --------------cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---------------------
Confidence                          2234556666666666653 32   45555555555555544321                     


Q ss_pred             CCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEcc
Q 044724          307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE  386 (782)
Q Consensus       307 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~  386 (782)
                               .++.+++|++|++++|++++ +|  +.. +++|+.|++++|.+++..+.           .+++|+.|+++
T Consensus       207 ---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~-l~~L~~L~l~~N~l~~~~~~-----------~l~~L~~L~l~  262 (457)
T 3bz5_A          207 ---------DLNQNIQLTFLDCSSNKLTE-ID--VTP-LTQLTYFDCSVNPLTELDVS-----------TLSKLTTLHCI  262 (457)
T ss_dssp             ---------CCTTCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCCSCCCCT-----------TCTTCCEEECT
T ss_pred             ---------ccccCCCCCEEECcCCcccc-cC--ccc-cCCCCEEEeeCCcCCCcCHH-----------HCCCCCEEecc
Confidence                     13345566666666666663 44  333 56666666666666543211           34555555554


Q ss_pred             CccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC
Q 044724          387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  466 (782)
Q Consensus       387 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  466 (782)
                      +|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ..++|+.|+++        
T Consensus       263 ~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~--------  315 (457)
T 3bz5_A          263 QT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS--------  315 (457)
T ss_dssp             TC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT--------
T ss_pred             CC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh--------
Confidence            43              23445555555544444  33445555555555544444332   22333333322        


Q ss_pred             CCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724          467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       467 p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                                   ++++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       316 -------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          316 -------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             -------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             -------------hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence                         234566666666666653 2  5566666666666666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=339.05  Aligned_cols=327  Identities=19%  Similarity=0.162  Sum_probs=215.4

Q ss_pred             ccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCC
Q 044724          299 LKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLT  378 (782)
Q Consensus       299 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~  378 (782)
                      ++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..|.        +++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~  104 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFT--------GLS  104 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSST--------TCT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCccccc--------CCC
Confidence            444444444444444455666677777777777777555555554 67777777777777655444444        567


Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|.++++|+.|+++
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence            77777777777776666677777777777777777776666677777777777777777776666667777777777777


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN  538 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  538 (782)
                      +|.+.+..+        ..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..          
T Consensus       185 ~n~i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------  246 (477)
T 2id5_A          185 HLNINAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH----------  246 (477)
T ss_dssp             SCCCCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----------
T ss_pred             CCcCcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----------
Confidence            777776555        34566677777777777666666665555567777777777776433233322          


Q ss_pred             CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccc
Q 044724          539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN  618 (782)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  618 (782)
                                                                 +++|+.|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus       247 -------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          247 -------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence                                                       4467777777777776666677777777777777777


Q ss_pred             ccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          619 LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       619 l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..+. ...+.......+.++...|..|
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence            7777777777777777777777777766666667777777777777777654432 2223333445566666666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.4e-37  Score=323.06  Aligned_cols=260  Identities=33%  Similarity=0.518  Sum_probs=231.1

Q ss_pred             CCCCEEEccCccccc--cCCccccCCCCCcEEECcC-CcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCce
Q 044724          378 TNVRWLLLEENHFVG--EIPQSLSKCFLLKGLYLNN-NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI  454 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  454 (782)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888888887  7788888888888888884 8888888888888888888888888888888888888888999


Q ss_pred             EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC-CCCEEEccCCcCCCcCCcccccccccc
Q 044724          455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN-QLQLLDLSDNNLHGLIPPFFYNTALHE  533 (782)
Q Consensus       455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~  533 (782)
                      |++++|++++.+|        ..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..     
T Consensus       130 L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-----  196 (313)
T 1ogq_A          130 LDFSYNALSGTLP--------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-----  196 (313)
T ss_dssp             EECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-----
T ss_pred             EeCCCCccCCcCC--------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-----
Confidence            9999999888888        5677888999999999999888888888887 8999999999998888877654     


Q ss_pred             cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceee
Q 044724          534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN  613 (782)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  613 (782)
                                                                      +. |+.|++++|.+++.+|..|+.+++|+.|+
T Consensus       197 ------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          197 ------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             ------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             ------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence                                                            23 88899999999999999999999999999


Q ss_pred             cccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724          614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       614 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      |++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|. ..++++++.+++.+||++|
T Consensus       228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCCCcc
Confidence            999999987776 88999999999999999999999999999999999999999999999 5889999999999999999


Q ss_pred             CCCCCCCC
Q 044724          694 GLPLPICR  701 (782)
Q Consensus       694 ~~~l~~C~  701 (782)
                      |.|+..|.
T Consensus       306 ~~p~~~C~  313 (313)
T 1ogq_A          306 GSPLPACT  313 (313)
T ss_dssp             STTSSCCC
T ss_pred             CCCCCCCC
Confidence            98887773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=339.85  Aligned_cols=307  Identities=21%  Similarity=0.235  Sum_probs=279.2

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++++.|++++|++++..|..+.. +++|++|++++|.+++..|..|.        ++++|++|+|++|++++..+..|..
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFN--------NLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccCEeChhhhh--------CCccCCEEECCCCcCCccCcccccC
Confidence            68999999999999665666665 89999999999999998888887        7999999999999999777778899


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|++|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+        ..+..
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~  174 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--------EALSH  174 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--------HHHTT
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--------hHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999986544        57889


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      +++|+.|++++|.+.+..+..|..+++|+.|++++|++.+.+|.....                                
T Consensus       175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------------  222 (477)
T 2id5_A          175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------------------------------  222 (477)
T ss_dssp             CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------------------------
T ss_pred             cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------------------------
Confidence            999999999999999988889999999999999999887766654322                                


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                           ..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++
T Consensus       223 ---------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          223 ---------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             ---------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred             ---------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence                                 23699999999999965557899999999999999999999999999999999999999


Q ss_pred             CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      |++++..|..|..+++|++|++++|++++..+..+..+.+++.+++.+||+.|+|+.
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            999999999999999999999999999998887778889999999999999999853

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4e-35  Score=327.74  Aligned_cols=302  Identities=25%  Similarity=0.368  Sum_probs=167.9

Q ss_pred             CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724           94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS  173 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~  173 (782)
                      .++++++|+++++.+.. ++.       +..+++|++|+|++|.+++..+  +.++++|++|++++|.++ .+++  +.+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~-------~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~  110 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG-------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LAN  110 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT-------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTT
T ss_pred             HhccccEEecCCCCCcc-Ccc-------hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcC
Confidence            35678888888887754 222       6677888888888888876544  778888888888888877 4443  778


Q ss_pred             CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEcc
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLS  253 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls  253 (782)
                      +++|++|++++|.+++.. +  +.++++|++|++++  +.+.+ ++ .                                
T Consensus       111 l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~--n~l~~-~~-~--------------------------------  151 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDID-P--LKNLTNLNRLELSS--NTISD-IS-A--------------------------------  151 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG-G--GTTCTTCSEEEEEE--EEECC-CG-G--------------------------------
T ss_pred             CCCCCEEECCCCCCCCCh-H--HcCCCCCCEEECCC--CccCC-Ch-h--------------------------------
Confidence            888888888888877763 2  77777777777777  33322 11 1                                


Q ss_pred             CceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcC
Q 044724          254 NNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNF  333 (782)
Q Consensus       254 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l  333 (782)
                                  +..+++|++|++.+ .+.+                             ..++..+++|++|++++|.+
T Consensus       152 ------------~~~l~~L~~L~l~~-~~~~-----------------------------~~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          152 ------------LSGLTSLQQLSFGN-QVTD-----------------------------LKPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ------------GTTCTTCSEEEEEE-SCCC-----------------------------CGGGTTCTTCCEEECCSSCC
T ss_pred             ------------hccCCcccEeecCC-cccC-----------------------------chhhccCCCCCEEECcCCcC
Confidence                        22333333333321 1100                             00123445555555555555


Q ss_pred             CccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCc
Q 044724          334 QGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN  413 (782)
Q Consensus       334 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  413 (782)
                      + .++ .+.. +++|++|++++|.+++..|  +.        .+++|++|++++|++++.  ..+..+++|++|++++|.
T Consensus       190 ~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~--~~--------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          190 S-DIS-VLAK-LTNLESLIATNNQISDITP--LG--------ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             C-CCG-GGGG-CTTCSEEECCSSCCCCCGG--GG--------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             C-CCh-hhcc-CCCCCEEEecCCccccccc--cc--------ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence            4 222 2333 5555555555555554333  11        345555555555555432  234555555555555555


Q ss_pred             ccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCc
Q 044724          414 LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN  493 (782)
Q Consensus       414 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~  493 (782)
                      +++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..|          +..+++|++|++++|+
T Consensus       255 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----------GGGCTTCSEEECCSSC
T ss_pred             cccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----------hcCCCCCCEEECcCCc
Confidence            554333  5555555555555555554322  4555555555555555553211          3445555555555555


Q ss_pred             ceeecCccccCCCCCCEEEccCCcCCC
Q 044724          494 LEGEVPVQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       494 l~~~~~~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                      +++..|  +..+++|+.|++++|++++
T Consensus       321 l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          321 ISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCchh--hccCccCCEeECCCCccCC
Confidence            554433  4455555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.1e-35  Score=325.72  Aligned_cols=345  Identities=23%  Similarity=0.315  Sum_probs=271.6

Q ss_pred             CCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhc
Q 044724           67 GRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSL  146 (782)
Q Consensus        67 ~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  146 (782)
                      .+++.|+++++.+....       .+..+++|++|+|++|.+++..+        +.++++|++|++++|.+++..+  +
T Consensus        46 ~~l~~L~l~~~~i~~l~-------~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~~~~--~  108 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSID-------GVEYLNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--L  108 (466)
T ss_dssp             HTCCEEECCSSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ccccEEecCCCCCccCc-------chhhhcCCCEEECCCCccCCchh--------hhccccCCEEECCCCccccChh--h
Confidence            36899999988764322       26789999999999999986533        8899999999999999997655  9


Q ss_pred             CCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcC
Q 044724          147 TRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESM  226 (782)
Q Consensus       147 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l  226 (782)
                      +++++|++|++++|.++ .++  .+..+++|++|++++|.+.+.  + .+..+++|++|++++   ...+..+  +    
T Consensus       109 ~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l~~---~~~~~~~--~----  173 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLSFGN---QVTDLKP--L----  173 (466)
T ss_dssp             TTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEEEEE---SCCCCGG--G----
T ss_pred             cCCCCCCEEECCCCCCC-CCh--HHcCCCCCCEEECCCCccCCC--h-hhccCCcccEeecCC---cccCchh--h----
Confidence            99999999999999998 566  489999999999999999886  3 588999999999964   2222111  2    


Q ss_pred             CCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccC
Q 044724          227 PSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSS  306 (782)
Q Consensus       227 ~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  306 (782)
                                     ..+++|+.|++++|.+++ ++  .+..+++|++|++++|.+.+..                    
T Consensus       174 ---------------~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~--------------------  215 (466)
T 1o6v_A          174 ---------------ANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNNQISDIT--------------------  215 (466)
T ss_dssp             ---------------TTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG--------------------
T ss_pred             ---------------ccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCCcccccc--------------------
Confidence                           235566666677776653 22  3667777777777777665431                    


Q ss_pred             CCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEcc
Q 044724          307 GYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLE  386 (782)
Q Consensus       307 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~  386 (782)
                             +  ++.+++|+.|++++|.+++ ++ .+.. +++|+.|++++|.+++..+  +.        .+++|++|+++
T Consensus       216 -------~--~~~l~~L~~L~l~~n~l~~-~~-~l~~-l~~L~~L~l~~n~l~~~~~--~~--------~l~~L~~L~l~  273 (466)
T 1o6v_A          216 -------P--LGILTNLDELSLNGNQLKD-IG-TLAS-LTNLTDLDLANNQISNLAP--LS--------GLTKLTELKLG  273 (466)
T ss_dssp             -------G--GGGCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCCCGG--GT--------TCTTCSEEECC
T ss_pred             -------c--ccccCCCCEEECCCCCccc-ch-hhhc-CCCCCEEECCCCccccchh--hh--------cCCCCCEEECC
Confidence                   1  3356788888888888873 43 4544 7899999999998876544  33        68889999999


Q ss_pred             CccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeC
Q 044724          387 ENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL  466 (782)
Q Consensus       387 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  466 (782)
                      +|.+++..+  +..+++|++|++++|++.+..+  +..+++|++|++++|++++..|  +..+++|++|++++|++++. 
T Consensus       274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  346 (466)
T 1o6v_A          274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-  346 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence            999886544  7888999999999999986544  7888999999999999987665  77889999999999998864 


Q ss_pred             CCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724          467 PSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       467 p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                               ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       347 ---------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          347 ---------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             ---------GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             ---------hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence                     246788999999999999987776  78899999999999998863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=305.96  Aligned_cols=177  Identities=23%  Similarity=0.191  Sum_probs=78.0

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      +..+++|++|++++|.+++..|..+.. +++|++|++++|.++...+..+.        ++++|++|++++|.+++..+.
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~--------~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCBCCTT
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEECCCCccCcCCHHHhc--------CCCCCcEEECCCCccCccChh
Confidence            334455555555555555333333333 45555555555555432222222        345555555555555544444


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE  476 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  476 (782)
                      .+..+++|++|++++|++++.   .+..+++|++|++++|.+++.     ...++|++|++++|.++.. |.        
T Consensus       160 ~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--------  222 (390)
T 3o6n_A          160 TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--------  222 (390)
T ss_dssp             TTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--------
T ss_pred             hccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--------
Confidence            455555555555555554432   133344444555554444321     1223444444444444432 11        


Q ss_pred             hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC
Q 044724          477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP  523 (782)
Q Consensus       477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  523 (782)
                        ...++|++|++++|++++.  ..+..+++|++|++++|++++..|
T Consensus       223 --~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          223 --PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             --CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             --cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence              1123444444444444422  234444444444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.2e-33  Score=320.86  Aligned_cols=335  Identities=19%  Similarity=0.206  Sum_probs=244.4

Q ss_pred             CCCCCeEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCC
Q 044724          244 WTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSL  323 (782)
Q Consensus       244 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  323 (782)
                      +++++.+++++|.+. .+|+..+.++++|++|++++|.+.+.                           .+..+..+++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~L  101 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI---------------------------DTYAFAYAHTI  101 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEE---------------------------CTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCC---------------------------ChHHhcCCCCC
Confidence            355667777777765 45655566677777777777666543                           23345567788


Q ss_pred             cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724          324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL  403 (782)
Q Consensus       324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  403 (782)
                      ++|++++|.+++..|..+.. +++|++|++++|.+++..+..|.        ++++|++|++++|.+++..|..|..+++
T Consensus       102 ~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B          102 QKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFH--------NTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             CEEECCCCcCCCCCHHHHcC-CCCCCEEEeeCCCCCCCCHHHhc--------cCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            88888888888544444444 78888888888888755554444        6788888888888888777777888888


Q ss_pred             CcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCC
Q 044724          404 LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG  483 (782)
Q Consensus       404 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~  483 (782)
                      |++|++++|.+++..   +..+++|++|++++|.+++.     ...++|+.|++++|.++...+.           ..++
T Consensus       173 L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-----------~~~~  233 (597)
T 3oja_B          173 LQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-----------VNVE  233 (597)
T ss_dssp             CCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-----------CCSC
T ss_pred             CcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc-----------cCCC
Confidence            888888888887542   45677888888888877642     3446788888888888754331           2367


Q ss_pred             CCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccc
Q 044724          484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSH  563 (782)
Q Consensus       484 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (782)
                      |+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..+..                                   
T Consensus       234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------  276 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-----------------------------------  276 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT-----------------------------------
T ss_pred             CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC-----------------------------------
Confidence            8888888888875  356778888888888888888777766644                                   


Q ss_pred             cEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCcc
Q 044724          564 EIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKL  643 (782)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  643 (782)
                                        +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++
T Consensus       277 ------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          277 ------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             ------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             ------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence                              4568888888888885 4666777888888888888888 5777788888888888888888


Q ss_pred             ccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          644 NGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       644 ~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ++. |  +..+++|++|++++|++++..+  ...+..+....+.+++..|+.+
T Consensus       337 ~~~-~--~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          337 VTL-K--LSTHHTLKNLTLSHNDWDCNSL--RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCC-C--CCTTCCCSEEECCSSCEEHHHH--HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCc-C--hhhcCCCCEEEeeCCCCCChhH--HHHHHHHhhhccccccccCCcc
Confidence            754 3  5667788888888888887543  3445666667778888888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=306.10  Aligned_cols=293  Identities=20%  Similarity=0.219  Sum_probs=224.3

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      +..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+.        ++++|++|++++|.++...+.
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~l~~~  135 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQ--------NVPLLTVLVLERNDLSSLPRG  135 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCCCCTT
T ss_pred             hcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhc--------CCCCCCEEECCCCccCcCCHH
Confidence            445677777777777777443444444 77788888888777766666555        677788888888877755444


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE  476 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  476 (782)
                      .|..+++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+++|+.|++++|.+++.           
T Consensus       136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----------  201 (390)
T 3o6n_A          136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----------  201 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----------
T ss_pred             HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----------
Confidence            567777788888888877777677777777788888887777754   245567777788877777642           


Q ss_pred             hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724          477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK  556 (782)
Q Consensus       477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (782)
                        ...++|++|++++|.++.. |..  ..++|+.|++++|++++.  ..+.                             
T Consensus       202 --~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~-----------------------------  245 (390)
T 3o6n_A          202 --AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL-----------------------------  245 (390)
T ss_dssp             --ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG-----------------------------
T ss_pred             --CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc-----------------------------
Confidence              2335678888888887754 322  246788888888887753  2222                             


Q ss_pred             ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724          557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL  636 (782)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  636 (782)
                                              .+++|+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|
T Consensus       246 ------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          246 ------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  300 (390)
T ss_dssp             ------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred             ------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence                                    15689999999999999999999999999999999999995 57777899999999


Q ss_pred             ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      ++++|+++ .+|..+..+++|++|++++|++++..   ...+++++.+++.+||+.|+|..
T Consensus       301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             ECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH
Confidence            99999999 67888999999999999999998763   45678999999999999997643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.5e-33  Score=320.61  Aligned_cols=293  Identities=20%  Similarity=0.219  Sum_probs=228.8

Q ss_pred             CCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC
Q 044724          316 PIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP  395 (782)
Q Consensus       316 ~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~  395 (782)
                      .+..+++|+.|++++|.+++..|..+.. +++|++|++++|.+++..|..|.        ++++|++|++++|.+++..+
T Consensus        70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~l~~  140 (597)
T 3oja_B           70 LLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQ--------NVPLLTVLVLERNDLSSLPR  140 (597)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTT--------TCTTCCEEECCSSCCCCCCT
T ss_pred             HHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHc--------CCCCCCEEEeeCCCCCCCCH
Confidence            3445677888888888877555545554 77888888888887776666655        67788888888888776555


Q ss_pred             ccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccch
Q 044724          396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI  475 (782)
Q Consensus       396 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  475 (782)
                      ..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+++.          
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l----------  207 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL----------  207 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE----------
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc----------
Confidence            55677788888888888887777777777888888888888777642   45567778888888877642          


Q ss_pred             hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccc
Q 044724          476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE  555 (782)
Q Consensus       476 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (782)
                         ...++|+.|++++|.++...+..   .++|+.|+|++|.+++.  ..+..                           
T Consensus       208 ---~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~---------------------------  252 (597)
T 3oja_B          208 ---AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN---------------------------  252 (597)
T ss_dssp             ---ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG---------------------------
T ss_pred             ---cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc---------------------------
Confidence               23456888888888877443322   35788888888887752  22222                           


Q ss_pred             cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724          556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN  635 (782)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  635 (782)
                                                +++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..++.+++|+.
T Consensus       253 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~  305 (597)
T 3oja_B          253 --------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV  305 (597)
T ss_dssp             --------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred             --------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence                                      5689999999999999999999999999999999999996 5777888999999


Q ss_pred             EecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          636 LDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       636 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      |+|++|+++ .+|..+..+++|++|++++|++++..   ...++++..+++.+||+.|+|.
T Consensus       306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence            999999999 68888999999999999999998763   4567889999999999999763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.5e-31  Score=285.29  Aligned_cols=263  Identities=23%  Similarity=0.332  Sum_probs=148.1

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      +..+++|++|++++|.++ .+| .+.. +++|++|++++|.+++..+  +.        .+++|++|++++|.....++ 
T Consensus        84 ~~~l~~L~~L~L~~n~i~-~~~-~~~~-l~~L~~L~l~~n~i~~~~~--~~--------~l~~L~~L~l~~n~~~~~~~-  149 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKIT-DIS-ALQN-LTNLRELYLNEDNISDISP--LA--------NLTKMYSLNLGANHNLSDLS-  149 (347)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCG-GGTT-CTTCSEEECTTSCCCCCGG--GT--------TCTTCCEEECTTCTTCCCCG-
T ss_pred             hhcCCcCCEEEccCCccc-Cch-HHcC-CCcCCEEECcCCcccCchh--hc--------cCCceeEEECCCCCCccccc-
Confidence            345566666666666665 333 3333 5666666666666654322  22        46666666666664443333 


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE  476 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  476 (782)
                      .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+         
T Consensus       150 ~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------  216 (347)
T 4fmz_A          150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---------  216 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---------
T ss_pred             chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---------
Confidence            35666666666666666654332  5566666666666666654322  5566666666666666653211         


Q ss_pred             hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724          477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK  556 (782)
Q Consensus       477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (782)
                       +..+++|++|++++|++++..+  +..+++|++|++++|++++. + .+..                            
T Consensus       217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~----------------------------  263 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVKD----------------------------  263 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTT----------------------------
T ss_pred             -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHhc----------------------------
Confidence             4455666666666666654332  55666666666666665532 1 1111                            


Q ss_pred             ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724          557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL  636 (782)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  636 (782)
                                               +++|+.|++++|++++.  +.+..+++|+.|++++|++++..|..|+.+++|+.|
T Consensus       264 -------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          264 -------------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             -------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             -------------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence                                     34566666666666543  345666666666666666666666666666666666


Q ss_pred             ecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724          637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  668 (782)
                      ++++|++++..|  +..+++|++|++++|+++
T Consensus       317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          317 FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccccccC--hhhhhccceeehhhhccc
Confidence            666666665444  556666666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=4.3e-31  Score=283.48  Aligned_cols=284  Identities=22%  Similarity=0.362  Sum_probs=243.0

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      +..+++|++|++++|+++ .+|. +.. +++|++|++++|.+++.  +.+.        .+++|++|++++|.+++..+ 
T Consensus        62 ~~~~~~L~~L~l~~n~i~-~~~~-~~~-l~~L~~L~L~~n~i~~~--~~~~--------~l~~L~~L~l~~n~i~~~~~-  127 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQIT-DISP-LSN-LVKLTNLYIGTNKITDI--SALQ--------NLTNLRELYLNEDNISDISP-  127 (347)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC--GGGT--------TCTTCSEEECTTSCCCCCGG-
T ss_pred             hhhcCCccEEEccCCccc-cchh-hhc-CCcCCEEEccCCcccCc--hHHc--------CCCcCCEEECcCCcccCchh-
Confidence            556889999999999998 5655 554 89999999999998753  2344        79999999999999986533 


Q ss_pred             cccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchh
Q 044724          397 SLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIE  476 (782)
Q Consensus       397 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  476 (782)
                       +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++. +         
T Consensus       128 -~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~---------  193 (347)
T 4fmz_A          128 -LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-S---------  193 (347)
T ss_dssp             -GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-G---------
T ss_pred             -hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-c---------
Confidence             8899999999999997665444 48999999999999999986544  88999999999999999853 3         


Q ss_pred             hhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccc
Q 044724          477 QINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK  556 (782)
Q Consensus       477 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (782)
                      .+..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..                            
T Consensus       194 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~----------------------------  241 (347)
T 4fmz_A          194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN----------------------------  241 (347)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------
T ss_pred             cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc----------------------------
Confidence            36788999999999999986554  8889999999999999986433  221                            


Q ss_pred             ccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEE
Q 044724          557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL  636 (782)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  636 (782)
                                               +++|+.|++++|.+++.  +.+..+++|+.|++++|++++.  ..+..+++|+.|
T Consensus       242 -------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  292 (347)
T 4fmz_A          242 -------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL  292 (347)
T ss_dssp             -------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             -------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence                                     56899999999999864  5789999999999999999965  468999999999


Q ss_pred             ecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCC
Q 044724          637 DLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF  691 (782)
Q Consensus       637 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~  691 (782)
                      ++++|++++..|..+..+++|++|++++|++++..|  ...+++++.+++.+|+.
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            999999999999999999999999999999998777  67899999999999974

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=5.3e-31  Score=280.57  Aligned_cols=288  Identities=19%  Similarity=0.273  Sum_probs=177.8

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      +++.++++++.++ .+|..+   .++++.|++++|.+++..+..+.        ++++|++|++++|.+++..|..|..+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTT--------TCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhc--------cCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            5667777777666 566544   24677777777777665555554        56777777777777776666667777


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCccee--eCCCCccccchhhhc
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPSCFHLLSIEQIN  479 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~  479 (782)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|+++.  ..+        ..+.
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~  168 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN--------GAFQ  168 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT--------TGGG
T ss_pred             CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh--------hhcc
Confidence            77777777777766 3444333  567777777777766666666677777777777776642  333        3455


Q ss_pred             CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      ++++|++|++++|+++. +|..+.  ++|++|++++|++++..|..+..                               
T Consensus       169 ~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-------------------------------  214 (330)
T 1xku_A          169 GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG-------------------------------  214 (330)
T ss_dssp             GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------
T ss_pred             CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------
Confidence            66667777777776663 443332  56667777777666555544432                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecC
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS  639 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  639 (782)
                                            +++|+.|++++|.+++..|..+..+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus       215 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          215 ----------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             ----------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ----------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence                                  345666677777666666666666666777777777666 566666666677777777


Q ss_pred             CCccccCCchhhhc------CCCCcEEEcccCcCcc--cCCCCccccCCCCcccccCC
Q 044724          640 YNKLNGKIPRQLVE------LNAFVVFSFACNNLSG--KIPELTAQFATFNESSYKGN  689 (782)
Q Consensus       640 ~N~l~~~ip~~l~~------l~~L~~L~ls~N~l~~--~~p~~~~~~~~l~~~~~~gN  689 (782)
                      +|++++..+..|..      .+.|+.+++++|++..  ..|..+..+.+++.+++++|
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            77766555555533      2556666666666643  23333444445555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=3.6e-31  Score=282.05  Aligned_cols=288  Identities=19%  Similarity=0.274  Sum_probs=191.5

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..|..+.        ++++|++|++++|.+++..|..|..+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFK--------GLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhh--------CCCCCcEEECCCCccCccCHhHhhCc
Confidence            5777777777777 677655   35777777777777766666655        67777777777777777767777777


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCccee--eCCCCccccchhhhc
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPSCFHLLSIEQIN  479 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~  479 (782)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|.++.  ..|        ..+.
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~~  170 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP--------GAFD  170 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT--------TSSC
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc--------cccc
Confidence            77777777777776 4444443  677777777777776666667777777777777777752  334        3344


Q ss_pred             CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      .+ +|++|++++|++++ +|..+.  ++|++|++++|++++..|..+..                               
T Consensus       171 ~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~-------------------------------  215 (332)
T 2ft3_A          171 GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR-------------------------------  215 (332)
T ss_dssp             SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------
T ss_pred             CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------
Confidence            44 67777777777764 444433  56777777777776655544432                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecC
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS  639 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  639 (782)
                                            +++|+.|++++|++++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus       216 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          216 ----------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             ----------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             ----------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence                                  345677777777777666666777777777777777777 566667777777777777


Q ss_pred             CCccccCCchhhhcC------CCCcEEEcccCcCc--ccCCCCccccCCCCcccccCCC
Q 044724          640 YNKLNGKIPRQLVEL------NAFVVFSFACNNLS--GKIPELTAQFATFNESSYKGNP  690 (782)
Q Consensus       640 ~N~l~~~ip~~l~~l------~~L~~L~ls~N~l~--~~~p~~~~~~~~l~~~~~~gNp  690 (782)
                      +|++++..+..|...      ..|+.+++++|++.  +..|..+..+..++.+++.+|.
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            777776555555442      45677777777766  4455545556666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.8e-30  Score=276.61  Aligned_cols=268  Identities=25%  Similarity=0.324  Sum_probs=224.1

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++++.|++++|.+++..|..+.. +++|++|++++|.+++..|..+.        ++++|++|++++|.++ .+|..+. 
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~L~~n~l~-~l~~~~~-  122 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFS--------PLRKLQKLYISKNHLV-EIPPNLP-  122 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGST--------TCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred             CCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhh--------CcCCCCEEECCCCcCC-ccCcccc-
Confidence            57888999999888554555655 88999999999998887777776        7899999999999988 4555444 


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccc--cCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI  478 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  478 (782)
                       ++|++|++++|++++..+..|.++++|++|++++|.++  +..+..+..+ +|++|++++|++++ +|..        +
T Consensus       123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~--------~  191 (332)
T 2ft3_A          123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD--------L  191 (332)
T ss_dssp             -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS--------S
T ss_pred             -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc--------c
Confidence             78999999999999777778999999999999999986  4678888888 89999999999985 5632        2


Q ss_pred             cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724          479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV  558 (782)
Q Consensus       479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (782)
                        .++|++|++++|++++..+..+..+++|++|++++|++++..|..+..                              
T Consensus       192 --~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------  239 (332)
T 2ft3_A          192 --PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF------------------------------  239 (332)
T ss_dssp             --CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG------------------------------
T ss_pred             --cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC------------------------------
Confidence              278999999999999888889999999999999999999877665543                              


Q ss_pred             ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC------CC
Q 044724          559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL------EA  632 (782)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~  632 (782)
                                             +++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|...      ..
T Consensus       240 -----------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          240 -----------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             -----------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred             -----------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence                                   557999999999999 788889999999999999999998887777654      67


Q ss_pred             CCEEecCCCccc--cCCchhhhcCCCCcEEEcccCc
Q 044724          633 YRNLDLSYNKLN--GKIPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       633 L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~  666 (782)
                      |+.|++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999998  6788889999999999999884

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.1e-30  Score=272.94  Aligned_cols=269  Identities=22%  Similarity=0.300  Sum_probs=225.7

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++++.|++++|++++..+..+.. +++|++|++++|.+++..|..+.        ++++|++|++++|.++ .+|..+. 
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~-~l~~~~~-  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFA--------PLVKLERLYLSKNQLK-ELPEKMP-  120 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCBCTTTTT--------TCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred             CCCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCeeCHHHhc--------CCCCCCEEECCCCcCC-ccChhhc-
Confidence            57889999999998544445555 89999999999999887787776        7899999999999988 4555444 


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCcccc--CCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEG--PIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI  478 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  478 (782)
                       ++|++|++++|.+++..+..+.++++|++|++++|.++.  ..+..+.++++|++|++++|+++. +|..        +
T Consensus       121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~--------~  190 (330)
T 1xku_A          121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--------L  190 (330)
T ss_dssp             -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--------C
T ss_pred             -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcc--------c
Confidence             689999999999998888889999999999999999863  778889999999999999999984 5632        2


Q ss_pred             cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724          479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV  558 (782)
Q Consensus       479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (782)
                        .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..                              
T Consensus       191 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------  238 (330)
T 1xku_A          191 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------  238 (330)
T ss_dssp             --CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------
T ss_pred             --cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------
Confidence              278999999999999888899999999999999999998876655543                              


Q ss_pred             ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC------CC
Q 044724          559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL------EA  632 (782)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~  632 (782)
                                             +++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|...      ..
T Consensus       239 -----------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          239 -----------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             -----------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             -----------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence                                   457999999999999 788899999999999999999998877777543      78


Q ss_pred             CCEEecCCCcccc--CCchhhhcCCCCcEEEcccCc
Q 044724          633 YRNLDLSYNKLNG--KIPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       633 L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~  666 (782)
                      |+.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccceEeecCcccccccCccccccccceeEEEecccC
Confidence            9999999999874  667889999999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=8e-32  Score=285.75  Aligned_cols=143  Identities=15%  Similarity=0.209  Sum_probs=98.0

Q ss_pred             CCCCcHHHHHHHHHhHhcCC-CCCCCcCCCCC-CCCCCCCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccC
Q 044724           17 SEGCLDHERFALLQLKHFFN-DPVNYLHDWVD-AKGATDCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTP   94 (782)
Q Consensus        17 ~~~~~~~~~~aLl~~k~~~~-~~~~~l~~W~~-~~~~~~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~   94 (782)
                      ...+..+|++||++||+++. |+.+.+++|.. .....++|.|.|+.|+.....             ..        ...
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~-------------l~--------~~~   79 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL-------------LE--------DAT   79 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH-------------HH--------HHT
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHH-------------Hh--------ccc
Confidence            45677899999999999985 77667788941 011578999999999631100             00        012


Q ss_pred             CCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCC
Q 044724           95 FQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSF  174 (782)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  174 (782)
                      .+++++|+|++|.++ .+|..      +.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|. .+.++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~------l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQ------AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSC------GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGC
T ss_pred             ccceeEEEccCCCch-hcChh------hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcC
Confidence            456677777777776 33332      666777778888777777 66777777777777777777777 6775 67777


Q ss_pred             CCCCEEEcccCCCCCc
Q 044724          175 NNLEVLDMKRNEIDNL  190 (782)
Q Consensus       175 ~~L~~L~Ls~n~l~~~  190 (782)
                      ++|++|++++|++.+.
T Consensus       150 ~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A          150 NRLRELSIRACPELTE  165 (328)
T ss_dssp             TTCCEEEEEEETTCCC
T ss_pred             cCCCEEECCCCCCccc
Confidence            7777777777666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.7e-34  Score=317.48  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhc----CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG  392 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~  392 (782)
                      +..+++|++|++++|.+++..+..+...    .++|++|++++|.+++.....+.    ..+..+++|++|++++|.+++
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~----~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA----SVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH----HHHHHCTTCCEEECCSSBCHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH----HHHhhCCCCCEEECcCCCcch
Confidence            4456678888888887765444444332    23567777776666543221111    011134556666666665554


Q ss_pred             cCCcccc-----CCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccc
Q 044724          393 EIPQSLS-----KCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLE  439 (782)
Q Consensus       393 ~~~~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  439 (782)
                      ..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            3222222     133555555555555432    2334444455555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3e-33  Score=312.71  Aligned_cols=195  Identities=14%  Similarity=0.117  Sum_probs=136.7

Q ss_pred             CCCCcEEEccCCcCCccC----ChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc--
Q 044724          320 HKSLRLLDVSNNNFQGCI----PVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE--  393 (782)
Q Consensus       320 ~~~L~~L~Ls~n~l~~~i----p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~--  393 (782)
                      .++|++|++++|.+++..    +..+.. +++|++|++++|.+++..+..+...++.   ..++|++|++++|.+++.  
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~---~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELTVSNNDINEAGVRVLCQGLKD---SPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHHH---SCCCCCEEECTTSCCBTTHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEECcCCCcchHHHHHHHHHHhc---CCCCceEEEccCCCCcHHHH
Confidence            457999999999998643    444444 7999999999999876544443321111   356899999999999864  


Q ss_pred             --CCccccCCCCCcEEECcCCcccccC-----CccccCcCCCCEEeCCCCccccC----CChhccCCCCCceEeccCCcc
Q 044724          394 --IPQSLSKCFLLKGLYLNNNNLSGKI-----PQWLGNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDISDNNI  462 (782)
Q Consensus       394 --~~~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l  462 (782)
                        ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence              4667778899999999999987543     22333578899999999988764    566677788888888888887


Q ss_pred             eeeCCCCccccchhhh-cCCCCCCEEEcCCCcceee----cCccccCCCCCCEEEccCCcCCCcC
Q 044724          463 SGSLPSCFHLLSIEQI-NGLSGLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNNLHGLI  522 (782)
Q Consensus       463 ~~~~p~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~  522 (782)
                      ++..+..+.    ..+ ...++|++|++++|.+++.    ++..+..+++|++|++++|++++..
T Consensus       297 ~~~~~~~l~----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          297 GDEGARLLC----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             HHHHHHHHH----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             chHHHHHHH----HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence            654332111    111 1235788888888877654    3455666677777777777766443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.7e-29  Score=276.41  Aligned_cols=247  Identities=23%  Similarity=0.211  Sum_probs=128.1

Q ss_pred             CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724          348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG  427 (782)
Q Consensus       348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  427 (782)
                      ...++.++..++ .+|..+          .++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~----------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  113 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI----------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN  113 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC----------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred             CCEEEeCCCCcC-cCCCCC----------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence            445555555554 333322          145566666666666555556666666666666666666555555666666


Q ss_pred             CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCccccCCC
Q 044724          428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLCGLN  506 (782)
Q Consensus       428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  506 (782)
                      |++|++++|++++..+..|..+++|++|++++|+++...+        ..|..+++|++|++++| .+....+..|.+++
T Consensus       114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS--------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH--------HHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            6666666666665555555556666666666666554333        33455555556665553 23333333455555


Q ss_pred             CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724          507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS  586 (782)
Q Consensus       507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  586 (782)
                      +|++|++++|+++. +|. +..                                                     +++|+
T Consensus       186 ~L~~L~L~~n~l~~-~~~-~~~-----------------------------------------------------l~~L~  210 (440)
T 3zyj_A          186 NLRYLNLAMCNLRE-IPN-LTP-----------------------------------------------------LIKLD  210 (440)
T ss_dssp             SCCEEECTTSCCSS-CCC-CTT-----------------------------------------------------CSSCC
T ss_pred             ccCeecCCCCcCcc-ccc-cCC-----------------------------------------------------CcccC
Confidence            55555555555542 121 100                                                     23445


Q ss_pred             eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724          587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  666 (782)
                      .|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|+
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            55555555554444555555555555555555554444445555555555555555554444444444444444444444


Q ss_pred             Cc
Q 044724          667 LS  668 (782)
Q Consensus       667 l~  668 (782)
                      +.
T Consensus       291 ~~  292 (440)
T 3zyj_A          291 WN  292 (440)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=5.3e-29  Score=277.00  Aligned_cols=247  Identities=21%  Similarity=0.207  Sum_probs=134.6

Q ss_pred             CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724          348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG  427 (782)
Q Consensus       348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  427 (782)
                      ...++.++..++ .+|..+          .+++++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~----------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI----------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC----------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CcEEEECCCCcC-ccCCCC----------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            445666555554 233322          145666666666666665666666666666666666666555566666666


Q ss_pred             CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCccccCCC
Q 044724          428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLCGLN  506 (782)
Q Consensus       428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  506 (782)
                      |++|+|++|++++..+..|..+++|++|++++|+++...+        ..+..+++|++|++++| .+....+..|.+++
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS--------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH--------hHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            6666666666665555556666666666666666654333        34455566666666653 33333333455555


Q ss_pred             CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724          507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS  586 (782)
Q Consensus       507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  586 (782)
                      +|++|++++|++++. |. +.                                                     .+++|+
T Consensus       197 ~L~~L~L~~n~l~~~-~~-~~-----------------------------------------------------~l~~L~  221 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDM-PN-LT-----------------------------------------------------PLVGLE  221 (452)
T ss_dssp             TCCEEECTTSCCSSC-CC-CT-----------------------------------------------------TCTTCC
T ss_pred             CCCEEECCCCccccc-cc-cc-----------------------------------------------------cccccc
Confidence            666666666555532 21 10                                                     033455


Q ss_pred             eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724          587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  666 (782)
                      .|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|+
T Consensus       222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            55555555555555555555555555555555555555555555555555555555554444444555555555555554


Q ss_pred             Cc
Q 044724          667 LS  668 (782)
Q Consensus       667 l~  668 (782)
                      +.
T Consensus       302 ~~  303 (452)
T 3zyi_A          302 WN  303 (452)
T ss_dssp             EE
T ss_pred             cC
Confidence            44

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=273.22  Aligned_cols=280  Identities=19%  Similarity=0.217  Sum_probs=226.9

Q ss_pred             CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc
Q 044724          320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS  399 (782)
Q Consensus       320 ~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  399 (782)
                      |+.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..+.        ++++|++|++++|.+++..+..|.
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~   97 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ--------RCVNLQALVLTSNGINTIEEDSFS   97 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc--------cCCCCCEEECCCCccCccCHhhcC
Confidence            455566899999998 8888664   5899999999999877666666        789999999999999988888899


Q ss_pred             CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCC-hhccCCCCCceEeccCCc-ceeeCCCCccccchhh
Q 044724          400 KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP-VEFCQLDWLQILDISDNN-ISGSLPSCFHLLSIEQ  477 (782)
Q Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~  477 (782)
                      .+++|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++|+ +++..|        ..
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~  169 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------KD  169 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------TT
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--------HH
Confidence            99999999999999997666668999999999999999986554 578899999999999994 665555        56


Q ss_pred             hcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccc
Q 044724          478 INGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKK  557 (782)
Q Consensus       478 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (782)
                      ++++++|++|++++|++++..|..+..+++|++|++++|+++. +|..+.                              
T Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~------------------------------  218 (353)
T 2z80_A          170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV------------------------------  218 (353)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH------------------------------
T ss_pred             ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhh------------------------------
Confidence            7889999999999999998889999999999999999999853 222211                              


Q ss_pred             cccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccc---cccccceeecccccccc----cCCccccCC
Q 044724          558 VEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIG---NLTRIQILNLSHNNLTG----TIPSTFSKL  630 (782)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l  630 (782)
                                            ..+++|+.|++++|.+++..+..+.   ....++.++|+++.+++    .+|..++.+
T Consensus       219 ----------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l  276 (353)
T 2z80_A          219 ----------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI  276 (353)
T ss_dssp             ----------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred             ----------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence                                  1156789999999999876655443   35667778888887775    467788888


Q ss_pred             CCCCEEecCCCccccCCchh-hhcCCCCcEEEcccCcCcccCCC
Q 044724          631 EAYRNLDLSYNKLNGKIPRQ-LVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       631 ~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      ++|++||+++|+++ .+|.. |..+++|++|++++|++++..|.
T Consensus       277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            89999999999988 45555 58888899999999888887664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.3e-29  Score=262.78  Aligned_cols=250  Identities=23%  Similarity=0.283  Sum_probs=154.4

Q ss_pred             cEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCccccc--CCccccCcC
Q 044724          349 SCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK--IPQWLGNLT  426 (782)
Q Consensus       349 ~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~  426 (782)
                      +.++.+++.++ .+|..+          .++|++|++++|+++...+..|..+++|++|++++|.++..  .+..+..++
T Consensus        10 ~~l~c~~~~l~-~ip~~~----------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC----------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred             CEEEcCCCCcc-cCCCCC----------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence            45666666665 233322          24677777777777644444566677777777777776632  245555666


Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN  506 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  506 (782)
                      +|++|++++|.+++ +|..+..+++|++|++++|++++..+.       ..+..+++|++|++++|.+++..+..+..++
T Consensus        79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  150 (306)
T 2z66_A           79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  150 (306)
T ss_dssp             CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT-------TTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred             ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc-------hhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence            77777777776663 455566667777777777766643321       2345666677777777766666666666666


Q ss_pred             CCCEEEccCCcCCC-cCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724          507 QLQLLDLSDNNLHG-LIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL  585 (782)
Q Consensus       507 ~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  585 (782)
                      +|++|++++|.+++ .+|..+..                                                     +++|
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------------------l~~L  177 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTE-----------------------------------------------------LRNL  177 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTT-----------------------------------------------------CTTC
T ss_pred             CCCEEECCCCccccccchhHHhh-----------------------------------------------------CcCC
Confidence            67777766666654 33433322                                                     3456


Q ss_pred             ceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC-CCcEEEccc
Q 044724          586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN-AFVVFSFAC  664 (782)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~  664 (782)
                      +.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            6666666666666666666666666666666666665555666666666666666666666666666663 666666666


Q ss_pred             CcCccc
Q 044724          665 NNLSGK  670 (782)
Q Consensus       665 N~l~~~  670 (782)
                      |++++.
T Consensus       258 N~~~~~  263 (306)
T 2z66_A          258 NDFACT  263 (306)
T ss_dssp             CCEECS
T ss_pred             CCeecc
Confidence            666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=272.27  Aligned_cols=281  Identities=19%  Similarity=0.241  Sum_probs=238.4

Q ss_pred             CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccC
Q 044724          345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN  424 (782)
Q Consensus       345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  424 (782)
                      ++.....+.+++.++ .+|..+          .++|++|++++|++++..+..+..+++|++|++++|++++..|..|.+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL----------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS   98 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCeEeeCCCCCcc-cccccc----------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence            566677899999987 455543          258999999999999877778999999999999999999888899999


Q ss_pred             cCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC-cceeecCcccc
Q 044724          425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN-NLEGEVPVQLC  503 (782)
Q Consensus       425 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  503 (782)
                      +++|++|++++|++++..+..|.++++|++|++++|++++ +|..      ..+..+++|++|++++| .+++..+..+.
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSS------CSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCch------hhhccCCCCcEEECCCCccccccCHHHcc
Confidence            9999999999999997766779999999999999999984 5520      14678999999999999 57777788999


Q ss_pred             CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhc
Q 044724          504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS  583 (782)
Q Consensus       504 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (782)
                      ++++|++|++++|++++..|..+..                                                     ++
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~-----------------------------------------------------l~  198 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKS-----------------------------------------------------IQ  198 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTT-----------------------------------------------------CS
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhc-----------------------------------------------------cc
Confidence            9999999999999999887776654                                                     45


Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCcccc---CCCCCCEEecCCCcccc----CCchhhhcCCC
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS---KLEAYRNLDLSYNKLNG----KIPRQLVELNA  656 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~----~ip~~l~~l~~  656 (782)
                      +|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+.   ....++.+++++|.+++    .+|+.+..+++
T Consensus       199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence            799999999999754444456789999999999999987666544   46789999999999986    47888999999


Q ss_pred             CcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          657 FVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       657 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      |++|++++|+++...+..+..+++++.+++.+||+.|+|+
T Consensus       279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9999999999996554545788999999999999999985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.1e-29  Score=262.21  Aligned_cols=276  Identities=23%  Similarity=0.260  Sum_probs=224.2

Q ss_pred             cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc--CCccccCC
Q 044724          324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE--IPQSLSKC  401 (782)
Q Consensus       324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l  401 (782)
                      +.++.+++.++ .+|..+   .++|++|++++|.++...+..|.        ++++|++|++++|.++..  .+..+..+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~~~   77 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFD--------KLTQLTKLSLSSNGLSFKGCCSQSDFGT   77 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTT--------TCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhh--------ccccCCEEECCCCccCcccCcccccccc
Confidence            57888888887 788755   36889999999988854444455        788999999999988743  35667778


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCC-hhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      ++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|        ..+..
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~  148 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNG  148 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------TTTTT
T ss_pred             cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------hhccc
Confidence            89999999999998 567778899999999999999987665 678899999999999999998777        56778


Q ss_pred             CCCCCEEEcCCCccee-ecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      +++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..                               
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------  197 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-------------------------------  197 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------------
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-------------------------------
Confidence            8999999999999986 67888999999999999999999877766543                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCC-CCCEEec
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE-AYRNLDL  638 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~LdL  638 (782)
                                            +++|+.|++++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|
T Consensus       198 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          198 ----------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             ----------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             ----------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence                                  45799999999999988888899999999999999999999999999984 9999999


Q ss_pred             CCCccccCCch--hhhcCCCCcEEEcccCcCcccCCC
Q 044724          639 SYNKLNGKIPR--QLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       639 s~N~l~~~ip~--~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      ++|++++..+.  ...-+...+.+.+..+++.+..|.
T Consensus       256 ~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          256 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             TTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             cCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            99999875331  112222333445556666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=9.6e-29  Score=262.03  Aligned_cols=234  Identities=20%  Similarity=0.296  Sum_probs=183.9

Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      .+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            356677777777776 55666666777777777777777 66777777777777777777777 5677777777777777


Q ss_pred             ccCCcceeeCCCCccccch-hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSI-EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY  535 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  535 (782)
                      +++|++.+.+|..+..... ..+.++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..       
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~-------  227 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH-------  227 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------
Confidence            7777777777754322111 23456888999999999988 778888899999999999999885 4444433       


Q ss_pred             cCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecc
Q 044724          536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS  615 (782)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  615 (782)
                                                                    +++|+.|++++|++.+.+|..++.+++|+.|+|+
T Consensus       228 ----------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          228 ----------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             ----------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence                                                          5578899999999999999999999999999999


Q ss_pred             cccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724          616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  668 (782)
                      +|.+.+.+|..++++++|+.|+|++|++.+.+|+.+.++++|+.+++..|.+.
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999998877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.8e-27  Score=264.58  Aligned_cols=250  Identities=22%  Similarity=0.222  Sum_probs=182.9

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      ....++.++..++ .+|..+.   ++++.|++++|.+++..+..|.        ++++|++|+|++|.+++..+..|..+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFR--------HLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcC--------CCCCCCEEECCCCccCCcChhhccCc
Confidence            3456777777777 6776542   5777888888887777676666        67778888888888777777777777


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      ++|++|+|++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|+..+.++.       ..+.++
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l  195 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-------GAFEGL  195 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------TTTTTC
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-------hhccCC
Confidence            7888888888887766666677777888888888877776666777778888888877444334443       346677


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK  561 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (782)
                      ++|++|++++|++++. | .+..+++|+.|+|++|++++..|..+..                                 
T Consensus       196 ~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------  240 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG---------------------------------  240 (452)
T ss_dssp             TTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT---------------------------------
T ss_pred             CCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC---------------------------------
Confidence            7788888888877743 3 4677777888888888777766665543                                 


Q ss_pred             cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                                          +++|+.|++++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus       241 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          241 --------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             --------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             --------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence                                446777888888887777777777788888888888887777777777778888888888


Q ss_pred             cccc
Q 044724          642 KLNG  645 (782)
Q Consensus       642 ~l~~  645 (782)
                      .+..
T Consensus       301 p~~C  304 (452)
T 3zyi_A          301 PWNC  304 (452)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            7764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.4e-27  Score=261.44  Aligned_cols=248  Identities=25%  Similarity=0.276  Sum_probs=144.3

Q ss_pred             CcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCC
Q 044724          323 LRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCF  402 (782)
Q Consensus       323 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  402 (782)
                      .+.++.++..++ .+|..+.   ++++.|++++|.+++..+..|.        ++++|++|+|++|.+++..+..|.+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~--------~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFK--------HLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTS--------SCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhh--------CCCCCCEEECCCCcCCccChhhccCCc
Confidence            445566666665 5555442   4566666666666655555554        556666666666666655555566666


Q ss_pred             CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724          403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS  482 (782)
Q Consensus       403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~  482 (782)
                      +|++|+|++|++++..+..|..+++|++|++++|.++...+..|.++++|++|++++|+..+.++.       ..|.+++
T Consensus       113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~  185 (440)
T 3zyj_A          113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-------GAFEGLS  185 (440)
T ss_dssp             SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------TTTTTCS
T ss_pred             cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-------chhhccc
Confidence            666666666666655455566666666666666666655555566666666666666433333332       3445566


Q ss_pred             CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724          483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS  562 (782)
Q Consensus       483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (782)
                      +|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..+..                                  
T Consensus       186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------  229 (440)
T 3zyj_A          186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG----------------------------------  229 (440)
T ss_dssp             SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT----------------------------------
T ss_pred             ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc----------------------------------
Confidence            6666666666665 333 3555666666666666666555544432                                  


Q ss_pred             ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724          563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK  642 (782)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  642 (782)
                                         +++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.
T Consensus       230 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          230 -------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             -------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             -------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence                               3355666666666666656666666666666666666665555556666666666666666


Q ss_pred             cc
Q 044724          643 LN  644 (782)
Q Consensus       643 l~  644 (782)
                      +.
T Consensus       291 ~~  292 (440)
T 3zyj_A          291 WN  292 (440)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.6e-28  Score=252.07  Aligned_cols=209  Identities=25%  Similarity=0.271  Sum_probs=114.5

Q ss_pred             CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCc-ceeeCCCCccccchhhhcCC
Q 044724          403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~~l  481 (782)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|+ ++...|        ..+..+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~--------~~~~~l  104 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP--------ATFHGL  104 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT--------TTTTTC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH--------HHhcCC
Confidence            45555555555554444445555555555555555555545555555555555555554 443333        334455


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK  561 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (782)
                      ++|++|++++|++++..|..+.++++|++|++++|++++..+..+..                                 
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------  151 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD---------------------------------  151 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc---------------------------------
Confidence            55555555555555544555555555555555555555433333322                                 


Q ss_pred             cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                                          +++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..|+++++|+.|++++|
T Consensus       152 --------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          152 --------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             --------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence                                334555566666555544445566666666666666666555666666666666666666


Q ss_pred             ccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724          642 KLNGKIPRQLVELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       642 ~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p  672 (782)
                      ++++..+..+..+++|++|++++|++.+..+
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            6665555556666666666666666654433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.2e-28  Score=250.62  Aligned_cols=253  Identities=22%  Similarity=0.223  Sum_probs=150.9

Q ss_pred             cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCC
Q 044724          324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFL  403 (782)
Q Consensus       324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  403 (782)
                      +.++.+++.++ .+|..+   .++|++|++++|.+++..+..+.        ++++|++|++++|.+++..|..+..+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~   81 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFR--------ACRNLTILWLHSNVLARIDAAAFTGLAL   81 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcc--------cCCCCCEEECCCCccceeCHhhcCCccC
Confidence            56666666666 566543   34666666666666555444444        4555555555555555555555555555


Q ss_pred             CcEEECcCCc-ccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724          404 LKGLYLNNNN-LSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS  482 (782)
Q Consensus       404 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~  482 (782)
                      |++|++++|. +....|..+..+++|++|++++|.+++..|..|                                ..++
T Consensus        82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~  129 (285)
T 1ozn_A           82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------------------RGLA  129 (285)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------------------------TTCT
T ss_pred             CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--------------------------------hCCc
Confidence            5555555554 443334444444444444444444444444444                                4455


Q ss_pred             CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724          483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS  562 (782)
Q Consensus       483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (782)
                      +|++|++++|++++..+..+..+++|++|++++|++++..+..+..                                  
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  175 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG----------------------------------  175 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------------------------------
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC----------------------------------
Confidence            5555555555555444444555666666666666655443333322                                  


Q ss_pred             ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724          563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK  642 (782)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  642 (782)
                                         +++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+
T Consensus       176 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          176 -------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             -------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence                               3456667777777776777778888888888888888887777778888888888888888


Q ss_pred             cccCCchhhhcCCCCcEEEcccCcCcccCCCC
Q 044724          643 LNGKIPRQLVELNAFVVFSFACNNLSGKIPEL  674 (782)
Q Consensus       643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~  674 (782)
                      +.+..+.. .-...++.+..+.|.+.+..|..
T Consensus       237 ~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          237 WVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             EECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            88654421 11122334456778888877763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2e-30  Score=299.44  Aligned_cols=291  Identities=13%  Similarity=0.097  Sum_probs=147.4

Q ss_pred             CCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCC---CccCCC--Ccc----ccccc
Q 044724           53 DCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIA---GCVENE--GAS----SREVT  123 (782)
Q Consensus        53 ~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~--~~~----~~~l~  123 (782)
                      -|++|.++.+..  .+  .+.+.+. ..     ......+.++++|++|+|+++...   +.+|..  ++.    .....
T Consensus        40 vck~W~~~~~~~--~~--~l~~~~~-~~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  109 (592)
T 3ogk_B           40 VCRRWFKIDSET--RE--HVTMALC-YT-----ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN  109 (592)
T ss_dssp             SCHHHHHHHHHH--CC--EEEESCG-GG-----SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred             HhHHHHHhhhcc--cc--EEEEeec-cc-----cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHh
Confidence            356899986542  22  2223221 10     012345677899999999876421   222211  000    00122


Q ss_pred             CCCCCcEEeCCCCCCCCcchhhcCC-CC-CCCEEEccCCc-CcC-cCChhhhcCCCCCCEEEcccCCCCCcc---CCCCC
Q 044724          124 RLNNLKMFDLSGNSFNNSILSSLTR-LS-SVRSLKLSYNR-LEG-SIDVKEFDSFNNLEVLDMKRNEIDNLV---VPQGF  196 (782)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~~~~~~~-l~-~L~~L~Ls~n~-l~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l  196 (782)
                      .+++|++|+|++|.+++..+..+.. ++ +|++|+|++|. +.. .++. ...++++|++|+|++|.+++..   ++..+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            6788888888888887766666655 33 48888888876 210 1111 2346788888888888765442   12233


Q ss_pred             CCCCCccEEecccCccccc----ccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCC
Q 044724          197 PHFKSLEHLDMSYAHIALN----TNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRL  272 (782)
Q Consensus       197 ~~l~~L~~L~L~~n~~~~~----~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  272 (782)
                      ..+++|++|++++  +.+.    ..++..+.. ++                  +|+.|++++|.+.+ ++ ..+.++++|
T Consensus       189 ~~~~~L~~L~L~~--n~~~~~~~~~l~~~~~~-~~------------------~L~~L~L~~~~~~~-l~-~~~~~~~~L  245 (592)
T 3ogk_B          189 QHNTSLEVLNFYM--TEFAKISPKDLETIARN-CR------------------SLVSVKVGDFEILE-LV-GFFKAAANL  245 (592)
T ss_dssp             HHCCCCCEEECTT--CCCSSCCHHHHHHHHHH-CT------------------TCCEEECSSCBGGG-GH-HHHHHCTTC
T ss_pred             hcCCCccEEEeec--cCCCccCHHHHHHHHhh-CC------------------CCcEEeccCccHHH-HH-HHHhhhhHH
Confidence            4567777777777  3333    222333333 33                  33444444444442 22 235555666


Q ss_pred             cEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEE
Q 044724          273 KIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFN  352 (782)
Q Consensus       273 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  352 (782)
                      ++|+++.......                        .+.....+..+++|+.|+++++... .+|..+.. +++|++|+
T Consensus       246 ~~L~l~~~~~~~~------------------------~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~  299 (592)
T 3ogk_B          246 EEFCGGSLNEDIG------------------------MPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPF-AAQIRKLD  299 (592)
T ss_dssp             CEEEECBCCCCTT------------------------CTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGG-GGGCCEEE
T ss_pred             Hhhcccccccccc------------------------hHHHHHHhhccccccccCccccchh-HHHHHHhh-cCCCcEEe
Confidence            6666554211000                        0111233445566777777665332 45544443 56666666


Q ss_pred             cccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECc
Q 044724          353 ISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLN  410 (782)
Q Consensus       353 Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  410 (782)
                      +++|.+++.....+       +..+++|++|+++++-..+.++.....+++|++|+++
T Consensus       300 Ls~~~l~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          300 LLYALLETEDHCTL-------IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             ETTCCCCHHHHHHH-------HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCCCcCCHHHHHHH-------HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            66666543322111       1145666666666222112222222345555666555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=4.7e-29  Score=263.54  Aligned_cols=268  Identities=18%  Similarity=0.180  Sum_probs=201.2

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      +++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+.        .+++|++|++++|.+++..+  +..+
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~~~~~--~~~l   79 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLA--------PFTKLELLNLSSNVLYETLD--LESL   79 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT--------TCTTCCEEECTTSCCEEEEE--ETTC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhh--------CCCcCCEEECCCCcCCcchh--hhhc
Confidence            4566677777765 44555555467888888888888776666665        67888888888888876554  7788


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      ++|++|++++|.+++..     ..++|++|++++|++++..+..   +++|++|++++|++++..|        ..++.+
T Consensus        80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~--------~~~~~l  143 (317)
T 3o53_A           80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD--------LDEGCR  143 (317)
T ss_dssp             TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG--------BCTGGG
T ss_pred             CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc--------hhhhcc
Confidence            88888888888887432     3478888888888887665443   5678888888888886655        345677


Q ss_pred             CCCCEEEcCCCcceeecCcccc-CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      ++|++|++++|++++..+..+. .+++|++|++++|++++..+..                                   
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------------------------  188 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------------------------------  188 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------------------------
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----------------------------------
Confidence            8888888888888877766664 6788888888888887541110                                   


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                          .+++|+.|++++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++
T Consensus       189 --------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          189 --------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             --------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred             --------------------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence                                045788888888888854 455888889999999999988 5677888888999999999


Q ss_pred             Cccc-cCCchhhhcCCCCcEEEccc-CcCcccCCC
Q 044724          641 NKLN-GKIPRQLVELNAFVVFSFAC-NNLSGKIPE  673 (782)
Q Consensus       641 N~l~-~~ip~~l~~l~~L~~L~ls~-N~l~~~~p~  673 (782)
                      |+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus       247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9988 77888888888888888884 456666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.9e-30  Score=294.90  Aligned_cols=289  Identities=12%  Similarity=-0.005  Sum_probs=209.4

Q ss_pred             CCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcc
Q 044724          318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS  397 (782)
Q Consensus       318 ~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  397 (782)
                      .++++|+.|++++|.+. .+|..+.. +++|+.|+++........     +..+..+..+++|+.|+++++.. +.+|..
T Consensus       217 ~~~~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~  288 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGM-----PEKYMNLVFPRKLCRLGLSYMGP-NEMPIL  288 (592)
T ss_dssp             HHCTTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTC-----TTSSSCCCCCTTCCEEEETTCCT-TTGGGG
T ss_pred             hhCCCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccch-----HHHHHHhhccccccccCccccch-hHHHHH
Confidence            45789999999999988 47766666 899999999864322111     11222334788999999988643 356777


Q ss_pred             ccCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccC-----------Ccceee
Q 044724          398 LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD-----------NNISGS  465 (782)
Q Consensus       398 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-----------N~l~~~  465 (782)
                      +..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++           |.+++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            8889999999999999765443 3467899999999994433333445556789999999993           566543


Q ss_pred             CCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccC-CCCCCEEEcc----CCcCCCcCCc-ccccccccccccCCC
Q 044724          466 LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG-LNQLQLLDLS----DNNLHGLIPP-FFYNTALHESYNNNS  539 (782)
Q Consensus       466 ~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~~p~-~~~~~~~~~~~~~~~  539 (782)
                      ...       .....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++...+ .+...          
T Consensus       369 ~~~-------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~----------  431 (592)
T 3ogk_B          369 GLI-------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL----------  431 (592)
T ss_dssp             HHH-------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH----------
T ss_pred             HHH-------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH----------
Confidence            110       22456899999999999998777767665 8999999996    5666643211 01000          


Q ss_pred             CCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc--cCccCCccccc-ccccceeeccc
Q 044724          540 SLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK--LIGHIPPPIGN-LTRIQILNLSH  616 (782)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~  616 (782)
                                                             ...+++|+.|++++|.  +++..+..++. +++|+.|+|++
T Consensus       432 ---------------------------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~  472 (592)
T 3ogk_B          432 ---------------------------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY  472 (592)
T ss_dssp             ---------------------------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred             ---------------------------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence                                                   0125689999998543  66655555544 88999999999


Q ss_pred             ccccc-cCCccccCCCCCCEEecCCCccccC-CchhhhcCCCCcEEEcccCcCccc
Q 044724          617 NNLTG-TIPSTFSKLEAYRNLDLSYNKLNGK-IPRQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       617 N~l~~-~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      |++++ .++..+.++++|++|++++|++++. ++.....+++|++|++++|+++..
T Consensus       473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99986 4456668899999999999998765 444556799999999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.6e-28  Score=258.90  Aligned_cols=191  Identities=23%  Similarity=0.227  Sum_probs=116.6

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCc-ccCCCcccccccccCCCCCCCCEEEccCccccccCCcc
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD-GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS  397 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  397 (782)
                      ..++|+.|++++|.+  .+|..+...   |+.|++++|.++ ..+|..+... .....++++|++|++++|++++.+|..
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFG-ALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHH-HHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHH-HHHhcCcCCccEEEccCCcccchhHHH
Confidence            446788888888888  788877762   888888888884 3333322100 000003677888888888887777766


Q ss_pred             c--cCCCCCcEEECcCCcccccCCccccCc-----CCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCc
Q 044724          398 L--SKCFLLKGLYLNNNNLSGKIPQWLGNL-----TGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  470 (782)
Q Consensus       398 l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  470 (782)
                      +  ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..|..+++|++|++++|++.+.++.. 
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-  192 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI-  192 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH-
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH-
Confidence            5  6777777888877777765 6666665     67777777777777666666777777777777777665431100 


Q ss_pred             cccchhhh--cCCCCCCEEEcCCCcceee---cCccccCCCCCCEEEccCCcCCCcC
Q 044724          471 HLLSIEQI--NGLSGLSHLILAHNNLEGE---VPVQLCGLNQLQLLDLSDNNLHGLI  522 (782)
Q Consensus       471 ~~~~~~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~  522 (782)
                           ..+  +.+++|++|++++|++++.   ....+..+++|++|++++|++++.+
T Consensus       193 -----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          193 -----SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             -----HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             -----HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence                 112  4555666666666655521   1122334455555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=5.9e-29  Score=262.18  Aligned_cols=248  Identities=24%  Similarity=0.250  Sum_probs=193.9

Q ss_pred             CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccc-ccCCcccc-------CCCCCcEEECcCCcccc
Q 044724          345 LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFV-GEIPQSLS-------KCFLLKGLYLNNNNLSG  416 (782)
Q Consensus       345 l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~N~l~~  416 (782)
                      .++|+.|++++|.+  .+|..+.          ..|++|++++|.++ ..+|..+.       .+++|++|++++|++++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~----------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  109 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFT----------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG  109 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHH----------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred             CCCceeEeeccccc--ccHHHHH----------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence            56788889999988  6666544          22888889999884 45565554       68889999999999988


Q ss_pred             cCCccc--cCcCCCCEEeCCCCccccCCChhccCC-----CCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc
Q 044724          417 KIPQWL--GNLTGLQHIIMPKNHLEGPIPVEFCQL-----DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL  489 (782)
Q Consensus       417 ~~p~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L  489 (782)
                      .+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|        ..++.+++|++|++
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--------EQVRVFPALSTLDL  180 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--------TTCCCCSSCCEEEC
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH--------HHhccCCCCCEEEC
Confidence            888876  8889999999999999877 7777776     889999999999987776        56678889999999


Q ss_pred             CCCcceee--cCccc--cCCCCCCEEEccCCcCCCc--CCcccccccccccccCCCCCCCCccccccccccccccccccc
Q 044724          490 AHNNLEGE--VPVQL--CGLNQLQLLDLSDNNLHGL--IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSH  563 (782)
Q Consensus       490 ~~N~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (782)
                      ++|++.+.  .+..+  ..+++|++|++++|++++.  ++..+.                                    
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------------------------------------  224 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA------------------------------------  224 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH------------------------------------
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH------------------------------------
Confidence            99987764  23344  7888999999999988732  111110                                    


Q ss_pred             cEEEEEecCCeeeecchhhcccceeeccCCccCccCC-cccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724          564 EIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP-PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK  642 (782)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  642 (782)
                                      ..+++|+.||+++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|+
T Consensus       225 ----------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          225 ----------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             ----------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred             ----------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence                            014578889999999988775 45667888999999999998 7777776  889999999999


Q ss_pred             cccCCchhhhcCCCCcEEEcccCcCccc
Q 044724          643 LNGKIPRQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      |++. |. +..+++|++|++++|++++.
T Consensus       286 l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          286 LDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            9866 65 88889999999999988763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.7e-28  Score=271.58  Aligned_cols=245  Identities=21%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724          378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI  457 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  457 (782)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            345555555555555444555555555555555555554333  5555555555555555553221     145555555


Q ss_pred             cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccC
Q 044724          458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN  537 (782)
Q Consensus       458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  537 (782)
                      ++|.+++..+           ..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.+|..+..         
T Consensus       107 ~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------  166 (487)
T 3oja_A          107 ANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------  166 (487)
T ss_dssp             CSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------
T ss_pred             cCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------
Confidence            5555554333           12355556666666655555555555556666666666655544443321         


Q ss_pred             CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccc
Q 044724          538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN  617 (782)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  617 (782)
                                                                 .+++|+.|+|++|.+++..+  +..+++|+.|+|++|
T Consensus       167 -------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          167 -------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             -------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred             -------------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCC
Confidence                                                       03355556666666554421  224556666666666


Q ss_pred             cccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc-ccCCCCccccCCCCccccc-------CC
Q 044724          618 NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS-GKIPELTAQFATFNESSYK-------GN  689 (782)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~l~~~~~~-------gN  689 (782)
                      .+++..| .|..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..+..+.+.       +|
T Consensus       202 ~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~  279 (487)
T 3oja_A          202 KLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (487)
T ss_dssp             CCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             CCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCC
Confidence            6664333 35566666666666666663 4555556666666666666665 3344333333333333333       67


Q ss_pred             CCCCCCC
Q 044724          690 PFLCGLP  696 (782)
Q Consensus       690 p~lC~~~  696 (782)
                      |+.|.++
T Consensus       280 ~~~c~~~  286 (487)
T 3oja_A          280 EEECTVP  286 (487)
T ss_dssp             SCCCSST
T ss_pred             cccccCC
Confidence            7777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6.1e-29  Score=262.71  Aligned_cols=272  Identities=19%  Similarity=0.166  Sum_probs=208.8

Q ss_pred             CcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCC
Q 044724          348 LSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTG  427 (782)
Q Consensus       348 L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  427 (782)
                      ++..+++.+.+.......+.        .+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~   81 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQ--------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST   81 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHT--------TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred             eeEeeccccchhhhHHHHhc--------cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence            44556666666533333222        56789999999999998777888999999999999999986654  888999


Q ss_pred             CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC
Q 044724          428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ  507 (782)
Q Consensus       428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  507 (782)
                      |++|++++|++++..     ..++|++|++++|++++..+           ..+++|++|++++|++++..+..+..+++
T Consensus        82 L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~  145 (317)
T 3o53_A           82 LRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSR  145 (317)
T ss_dssp             CCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCTGGGSS
T ss_pred             CCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhhhccCC
Confidence            999999999988543     34889999999999987654           24678999999999998877878888999


Q ss_pred             CCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccce
Q 044724          508 LQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG  587 (782)
Q Consensus       508 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  587 (782)
                      |++|++++|++++..|..+..                                                    .+++|+.
T Consensus       146 L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------------~l~~L~~  173 (317)
T 3o53_A          146 VQYLDLKLNEIDTVNFAELAA----------------------------------------------------SSDTLEH  173 (317)
T ss_dssp             EEEEECTTSCCCEEEGGGGGG----------------------------------------------------GTTTCCE
T ss_pred             CCEEECCCCCCCcccHHHHhh----------------------------------------------------ccCcCCE
Confidence            999999999988765554421                                                    1457889


Q ss_pred             eeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724          588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL  667 (782)
Q Consensus       588 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  667 (782)
                      |++++|.+++. | ....+++|++|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus       174 L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          174 LNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             EECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred             EECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence            99999999865 3 334588999999999999954 445888999999999999998 5788888899999999999999


Q ss_pred             c-ccCCCCccccCCCCcccccCCCCCCCCCCCCCC
Q 044724          668 S-GKIPELTAQFATFNESSYKGNPFLCGLPLPICR  701 (782)
Q Consensus       668 ~-~~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~C~  701 (782)
                      + +.+|..+..++.++.+++.+++.+.+.....|.
T Consensus       250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT  284 (317)
T ss_dssp             BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred             cCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence            8 666666666667777777755444443333343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3e-25  Score=252.92  Aligned_cols=247  Identities=25%  Similarity=0.331  Sum_probs=171.5

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++|+.|++++|+++ .+|.    .+++|++|++++|.+++ +|.           .+++|++|++++|.+++. |.   .
T Consensus        61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~-----------~l~~L~~L~Ls~N~l~~l-~~---~  119 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV-----------LPPGLLELSIFSNPLTHL-PA---L  119 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC-----------CCTTCCEEEECSCCCCCC-CC---C
T ss_pred             CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC-----------CCCCCCEEECcCCcCCCC-CC---C
Confidence            56777777777777 5665    25777777777777763 332           356777777777777753 33   4


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|+.|++++|++++ +|..   +++|++|++++|++++. |.   ..++|+.|++++|++++ +|           ..
T Consensus       120 l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~-----------~~  179 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP-----------ML  179 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-----------CC
T ss_pred             CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-----------cc
Confidence            5677778888777774 4443   36777888888877753 33   34567788888887774 44           23


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      +++|+.|++++|++++ +|..   .++|+.|++++|.++. +|..                                   
T Consensus       180 ~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~-----------------------------------  219 (622)
T 3g06_A          180 PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------------------------------  219 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC-----------------------------------
T ss_pred             CCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC-----------------------------------
Confidence            5778888888888774 3432   4678888888887763 2211                                   


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                           +++|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++
T Consensus       220 ---------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          220 ---------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             ---------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             ---------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence                                 2467788888888885 55   45577888888888888 4555   567888888888


Q ss_pred             CccccCCchhhhcCCCCcEEEcccCcCcccCCCCcccc
Q 044724          641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQF  678 (782)
Q Consensus       641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  678 (782)
                      |+|+ .+|..+.++++|+.|++++|++++.+|..+..+
T Consensus       271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            8888 678888888888888888888888777644443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.1e-27  Score=261.73  Aligned_cols=234  Identities=18%  Similarity=0.170  Sum_probs=186.7

Q ss_pred             CCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC
Q 044724          347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT  426 (782)
Q Consensus       347 ~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  426 (782)
                      +|+.|++++|.+++..|..+.        .+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..     ..+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~   99 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLA--------PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGP   99 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGT--------TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred             CccEEEeeCCcCCCCCHHHHh--------CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCC
Confidence            788888888888776666665        67888888888888876655  777888888888888887433     237


Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc-CC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC-GL  505 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l  505 (782)
                      +|++|++++|.+++..+.   .+++|+.|++++|.+++..|        ..++.+++|++|+|++|.+++..|..+. .+
T Consensus       100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l  168 (487)
T 3oja_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--------LDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (487)
T ss_dssp             TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG--------BCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc--------hhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence            888888888888866554   35778888888888887766        4566788889999999998888887776 68


Q ss_pred             CCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccc
Q 044724          506 NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLL  585 (782)
Q Consensus       506 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  585 (782)
                      ++|++|+|++|.+++..+..                                                       .+++|
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------------~l~~L  193 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKGQV-------------------------------------------------------VFAKL  193 (487)
T ss_dssp             TTCCEEECTTSCCCEEECCC-------------------------------------------------------CCTTC
T ss_pred             CcccEEecCCCccccccccc-------------------------------------------------------cCCCC
Confidence            89999999999888652211                                                       05578


Q ss_pred             ceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc-cCCchhhhcCCCCcEEEcc
Q 044724          586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN-GKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  663 (782)
                      +.|+|++|.+++.. ..+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       194 ~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          194 KTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999999999754 458999999999999999995 7888999999999999999998 7788888889888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.2e-25  Score=232.60  Aligned_cols=227  Identities=23%  Similarity=0.277  Sum_probs=144.2

Q ss_pred             EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCc
Q 044724          382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN  461 (782)
Q Consensus       382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  461 (782)
                      ..+-.+..++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3444455554 3454443  467777777777776666677777777777777777776666677777777777777777


Q ss_pred             ceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc-CCcccccccccccccCCCC
Q 044724          462 ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL-IPPFFYNTALHESYNNNSS  540 (782)
Q Consensus       462 l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~  540 (782)
                      +++..+        ..+.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..            
T Consensus        88 l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~------------  147 (276)
T 2z62_A           88 IQSLAL--------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------------  147 (276)
T ss_dssp             CCEECT--------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG------------
T ss_pred             cCccCh--------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc------------
Confidence            776655        3456667777777777777665555666777777777777776653 3444432            


Q ss_pred             CCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccc----eeeccc
Q 044724          541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQ----ILNLSH  616 (782)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~  616 (782)
                                                               +++|+.|++++|++++..+..+..+++|+    .|++++
T Consensus       148 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          148 -----------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             -----------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence                                                     34566666666666666556666665555    566666


Q ss_pred             ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724          617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      |.+++..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            6666544444433 3566666666666655555556666666666666666655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.5e-29  Score=290.40  Aligned_cols=473  Identities=13%  Similarity=0.129  Sum_probs=256.6

Q ss_pred             CCCcccceEecCCCCCEEEEEcCCCCCccccccccCcccccCCCCCCEEeCCCCCCCCcc---CCC--Cc----cccccc
Q 044724           53 DCCQWANVECNNTTGRVIQLYLSNTRSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCV---ENE--GA----SSREVT  123 (782)
Q Consensus        53 ~~C~w~gv~C~~~~~~V~~L~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~--~~----~~~~l~  123 (782)
                      -|++|.++...    ....+++......      .+...+.++++|++|+++++......   |..  ..    ......
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  102 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCYAV------SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS  102 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTTSS------CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred             HHHHHHHhhhh----hceEEeecccccc------CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH
Confidence            46689988322    2345566543221      11235678899999999998632211   110  00    001134


Q ss_pred             CCCCCcEEeCCCCCCCCcchhhcC-CCCCCCEEEccCC-cCcCc-CChhhhcCCCCCCEEEcccCCCCCcc---CCCCCC
Q 044724          124 RLNNLKMFDLSGNSFNNSILSSLT-RLSSVRSLKLSYN-RLEGS-IDVKEFDSFNNLEVLDMKRNEIDNLV---VPQGFP  197 (782)
Q Consensus       124 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~  197 (782)
                      .+++|++|+|++|.+++..+..+. .+++|++|+|++| .+... ++. .+.++++|++|++++|.+++..   ++....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            688999999999999987777776 6999999999999 45422 332 4568999999999999977643   123345


Q ss_pred             CCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeeecCCCCcCCCCCCcEEEc
Q 044724          198 HFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHA  277 (782)
Q Consensus       198 ~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l  277 (782)
                      .+++|++|++++|...+.......+...+++|++|++++..                 .+.+ ++ ..+..+++|+.|++
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-----------------~~~~-l~-~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-----------------PLEK-LA-TLLQRAPQLEELGT  242 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS-----------------CHHH-HH-HHHHHCTTCSEEEC
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC-----------------cHHH-HH-HHHhcCCcceEccc
Confidence            78899999999854223333333333336777777766521                 1111 11 12334445555554


Q ss_pred             cCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEE-EccCCcCCccCChhhhhcCCCCcEEEcccC
Q 044724          278 YNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLL-DVSNNNFQGCIPVEIGDILPSLSCFNISMN  356 (782)
Q Consensus       278 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  356 (782)
                      ..+...-..                    +.+.+ .+..+.++++|+.| .+.+... +.++..+.. +++|++|++++|
T Consensus       243 ~~~~~~~~~--------------------~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~-~~~L~~L~L~~~  299 (594)
T 2p1m_B          243 GGYTAEVRP--------------------DVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSV-CSRLTTLNLSYA  299 (594)
T ss_dssp             SBCCCCCCH--------------------HHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHH-HTTCCEEECTTC
T ss_pred             ccccCccch--------------------hhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHh-hCCCCEEEccCC
Confidence            332110000                    00000 01112234444444 2222211 123332222 455666666555


Q ss_pred             cCcccCCCcccccccccCCCCCCCCEEEccCcccccc-CCccccCCCCCcEEECc---------CCcccccCCcccc-Cc
Q 044724          357 ALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE-IPQSLSKCFLLKGLYLN---------NNNLSGKIPQWLG-NL  425 (782)
Q Consensus       357 ~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l  425 (782)
                      .+++.....+       +..+++|++|++++| ++.. ++.....+++|++|++.         .+.+++.....+. ++
T Consensus       300 ~l~~~~l~~~-------~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~  371 (594)
T 2p1m_B          300 TVQSYDLVKL-------LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC  371 (594)
T ss_dssp             CCCHHHHHHH-------HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred             CCCHHHHHHH-------HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence            5443221111       114556666666655 3221 11112235566666662         2344332222222 36


Q ss_pred             CCCCEEeCCCCccccCCChhcc-CCCCCceEecc--C----CcceeeCCC-CccccchhhhcCCCCCCEEEcCCCcceee
Q 044724          426 TGLQHIIMPKNHLEGPIPVEFC-QLDWLQILDIS--D----NNISGSLPS-CFHLLSIEQINGLSGLSHLILAHNNLEGE  497 (782)
Q Consensus       426 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~  497 (782)
                      ++|++|.+..|.+++..+..+. .+++|+.|+++  +    |.+++...+ .+.    ..+..+++|++|++++ .+++.
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~----~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG----AIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH----HHHHHCTTCCEEECCS-SCCHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH----HHHhhCCCccEEeecC-cccHH
Confidence            6777777766766655444444 46777777777  3    344421100 000    2245677788888866 55554


Q ss_pred             cCccccC-CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeee
Q 044724          498 VPVQLCG-LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYT  576 (782)
Q Consensus       498 ~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (782)
                      .+..+.. +++|+.|+|++|.+++..+..+.                                                 
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-------------------------------------------------  477 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-------------------------------------------------  477 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-------------------------------------------------
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHH-------------------------------------------------
Confidence            4444444 77788888888877543222210                                                 


Q ss_pred             ecchhhcccceeeccCCccCccCCc-ccccccccceeecccccccccCCccc-cCCCCCCEEecCCCcc
Q 044724          577 YQGRVLSLLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTF-SKLEAYRNLDLSYNKL  643 (782)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~LdLs~N~l  643 (782)
                         ..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++......+ ..++.|+...+..+.-
T Consensus       478 ---~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          478 ---SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             ---HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             ---hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence               0145688888888887644333 34557888888888888764433334 4567777666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.9e-25  Score=228.02  Aligned_cols=208  Identities=24%  Similarity=0.282  Sum_probs=114.2

Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN  506 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  506 (782)
                      +|++|++++|++++..+..|.++++|++|++++|++++..+        ..+..+++|++|++++|++++..+..|.+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH--------HHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            45566666666655555555556666666666665554444        3345555666666666666555555555566


Q ss_pred             CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724          507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS  586 (782)
Q Consensus       507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  586 (782)
                      +|++|++++|++++..+..+..                                                     +++|+
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~  127 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGH-----------------------------------------------------LKTLK  127 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTT-----------------------------------------------------CTTCC
T ss_pred             cccEEECCCCCccccCchhccc-----------------------------------------------------CCCCC
Confidence            6666666666555433322221                                                     33555


Q ss_pred             eeeccCCccCcc-CCcccccccccceeecccccccccCCccccCCCCCC----EEecCCCccccCCchhhhcCCCCcEEE
Q 044724          587 GIDLSCNKLIGH-IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYR----NLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       587 ~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      .|++++|.+++. +|..++.+++|++|+|++|++++..+..|..+++|+    +|++++|++++..+..+. ..+|++|+
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~  206 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELA  206 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEE
Confidence            566666665542 455566666666666666666555555555554444    556666666544333332 23556666


Q ss_pred             cccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       662 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +++|++++..+..+..+.+++.+++.+||+.|+|+
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            66666655555444555555556666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.4e-24  Score=245.53  Aligned_cols=259  Identities=26%  Similarity=0.343  Sum_probs=215.9

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      .+++.|++++|.++ .+|..+.   ++|+.|++++|.++. +|.           .+++|++|++++|++++ +|.   .
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~-----------~l~~L~~L~Ls~N~l~~-lp~---~   99 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA-----------LPPELRTLEVSGNQLTS-LPV---L   99 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC-----------CCTTCCEEEECSCCCSC-CCC---C
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC-----------cCCCCCEEEcCCCcCCc-CCC---C
Confidence            35899999999999 8898764   799999999999984 443           36899999999999984 554   6


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|++|++++|.+++ +|.   .+++|++|++++|++++ +|..   +++|++|++++|++++ +|.           .
T Consensus       100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~-----------~  159 (622)
T 3g06_A          100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA-----------L  159 (622)
T ss_dssp             CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-----------C
T ss_pred             CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC-----------c
Confidence            7899999999999985 444   57899999999999996 4543   4899999999999985 452           3


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      +++|+.|++++|++++ +|   ..+++|+.|++++|++++ +|..                                   
T Consensus       160 ~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~-----------------------------------  199 (622)
T 3g06_A          160 PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL-----------------------------------  199 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC-----------------------------------
T ss_pred             cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc-----------------------------------
Confidence            5789999999999985 55   457899999999999985 3321                                   


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                           +++|+.|++++|.++ .+|..   +++|+.|+|++|+|++ +|   ..+++|+.|+|++
T Consensus       200 ---------------------~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          200 ---------------------PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSG  250 (622)
T ss_dssp             ---------------------CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             ---------------------cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence                                 346889999999999 45643   4789999999999996 66   4668999999999


Q ss_pred             CccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724          641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      |+|+ .+|.   .+++|++|++++|+|+ .+|..+..+++++.+++.+|++..
T Consensus       251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            9999 5665   6789999999999999 667768889999999999999764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.3e-24  Score=223.77  Aligned_cols=204  Identities=22%  Similarity=0.260  Sum_probs=122.3

Q ss_pred             CCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCC
Q 044724          403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLS  482 (782)
Q Consensus       403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~  482 (782)
                      ..+.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|+++...+        ..|..++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------~~~~~l~   85 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------GIFKELK   85 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT--------TTTSSCT
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh--------hhhcCCC
Confidence            4667777777776 3554443  467777777777776666667777777777777777663333        3345666


Q ss_pred             CCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccc
Q 044724          483 GLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKS  562 (782)
Q Consensus       483 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (782)
                      +|++|++++|++++..+..|..+++|++|++++|++++..|..+..                                  
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  131 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------------------------------  131 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----------------------------------
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----------------------------------
Confidence            6666666666666555555666666666666666666544433322                                  


Q ss_pred             ccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCc
Q 044724          563 HEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNK  642 (782)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  642 (782)
                                         +++|+.|+|++|.+++..+..|+.+++|+.|+|++|++++..+..|.++++|+.|++++|+
T Consensus       132 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          132 -------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence                               3355666666666665444455566666666666666665555555556666666666666


Q ss_pred             cccCCchhhhcCCCCcEEEcccCcCccc
Q 044724          643 LNGKIPRQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       643 l~~~ip~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      +++..+..|..+++|+.|++++|++.+.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            6554444455555555555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.2e-24  Score=224.07  Aligned_cols=113  Identities=24%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++
T Consensus       100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            34555555555555555555666666666666666666555555566666666666666666444444555666666666


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ++|+++. +|.......+++.+.+.+|||.|+|.
T Consensus       180 ~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          180 QENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCCcCCc-cChhhcccccCCeEEeCCCCccCcCc
Confidence            6666653 33324444555666666666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.5e-23  Score=215.99  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      +|+.|++++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|+.|++++|++++..+..|..+++|++|+++
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            44555555555554444444555555555555555554444444555555555555555554444444455555555555


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGL  695 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~  695 (782)
                      +|++++..+..+..+++++.+++.+||+.|+|
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            55555444433444444555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.2e-27  Score=274.13  Aligned_cols=285  Identities=14%  Similarity=0.122  Sum_probs=156.6

Q ss_pred             CCCCcEEEccCC-cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEE-EccCccccccCCcc
Q 044724          320 HKSLRLLDVSNN-NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWL-LLEENHFVGEIPQS  397 (782)
Q Consensus       320 ~~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~  397 (782)
                      +++|++|++++| .+. .+|..+.. +++|+.|+++.+... ..+..+.+ ++..+.++++|+.| .+.+... +.++..
T Consensus       210 ~~~L~~L~L~~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~-~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~  284 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLE-KLATLLQR-APQLEELGTGGYTAE-VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAV  284 (594)
T ss_dssp             CTTCCEEECCTTSCHH-HHHHHHHH-CTTCSEEECSBCCCC-CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGG
T ss_pred             CCCCcEEecCCCCcHH-HHHHHHhc-CCcceEcccccccCc-cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHH
Confidence            466777777776 333 35555544 677777775544310 00000000 11112256777777 3333222 233444


Q ss_pred             ccCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccC-CChhccCCCCCceEeccC---------CcceeeC
Q 044724          398 LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGP-IPVEFCQLDWLQILDISD---------NNISGSL  466 (782)
Q Consensus       398 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~  466 (782)
                      +..+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++++         +.+++..
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            4456777777777777654322 22456777777777776 3322 222233467777777733         3333221


Q ss_pred             CCCccccchhhh-cCCCCCCEEEcCCCcceeecCcccc-CCCCCCEEEcc--C----CcCCCcCCc-ccccccccccccC
Q 044724          467 PSCFHLLSIEQI-NGLSGLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLS--D----NNLHGLIPP-FFYNTALHESYNN  537 (782)
Q Consensus       467 p~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~~~~~~~~~~  537 (782)
                      .        ..+ .++++|++|.++.|.+++.....+. .+++|+.|+++  +    |.+++.... .+...        
T Consensus       364 l--------~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l--------  427 (594)
T 2p1m_B          364 L--------VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI--------  427 (594)
T ss_dssp             H--------HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH--------
T ss_pred             H--------HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH--------
Confidence            1        122 2467788887777777655544444 47778888887  3    344321110 00000        


Q ss_pred             CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc-ccccceeeccc
Q 044724          538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN-LTRIQILNLSH  616 (782)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~  616 (782)
                                                               ...+++|+.|++++ .+++..+..++. +++|+.|+|++
T Consensus       428 -----------------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          428 -----------------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             -----------------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             -----------------------------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence                                                     01145677777766 555544445554 67777777777


Q ss_pred             ccccccCCccc-cCCCCCCEEecCCCccccCCch-hhhcCCCCcEEEcccCcCc
Q 044724          617 NNLTGTIPSTF-SKLEAYRNLDLSYNKLNGKIPR-QLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       617 N~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~  668 (782)
                      |.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus       466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            77765554444 5577777778777777544443 2344677777777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.5e-24  Score=222.01  Aligned_cols=222  Identities=21%  Similarity=0.254  Sum_probs=163.4

Q ss_pred             CEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724          381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN  460 (782)
Q Consensus       381 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  460 (782)
                      ..+++..+.+....  ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            33444444443322  23455666666666666652 2 2366667777777777776652  35677777777777777


Q ss_pred             cceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCC
Q 044724          461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSS  540 (782)
Q Consensus       461 ~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  540 (782)
                      .+++..+        ..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..            
T Consensus        96 ~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------  155 (272)
T 3rfs_A           96 QLQSLPN--------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------  155 (272)
T ss_dssp             CCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             ccCccCh--------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------------
Confidence            7775555        34567778888888888887666667788888888888888887665554433            


Q ss_pred             CCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccc
Q 044724          541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT  620 (782)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  620 (782)
                                                               +++|+.|++++|++++..|..++.+++|+.|+|++|+++
T Consensus       156 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          156 -----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence                                                     457888888888888877777889999999999999999


Q ss_pred             ccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCcc
Q 044724          621 GTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTA  676 (782)
Q Consensus       621 ~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~  676 (782)
                      +..|..|+.+++|+.|++++|.+.+..|       .|+.++++.|+++|.+|...+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccc
Confidence            8888889999999999999999886544       688889999999999998543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.1e-23  Score=215.46  Aligned_cols=178  Identities=23%  Similarity=0.206  Sum_probs=96.3

Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN  506 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  506 (782)
                      ++++|++++|.+++..+..|..+++|++|++++|.+++..+          .+.+++|++|++++|+++ .+|..+..++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~  100 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP  100 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------CSCCTTCCEEECCSSCCS-SCCCCTTTCT
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----------CCCCCcCCEEECCCCcCC-cCchhhccCC
Confidence            44444444444444444444444445555555554443222          134455555555555554 4444555555


Q ss_pred             CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccc
Q 044724          507 QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLS  586 (782)
Q Consensus       507 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  586 (782)
                      +|++|++++|++++..|..+..                                                     +++|+
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~-----------------------------------------------------l~~L~  127 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRG-----------------------------------------------------LGELQ  127 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTT-----------------------------------------------------CTTCC
T ss_pred             CCCEEECCCCcCcccCHHHHcC-----------------------------------------------------CCCCC
Confidence            5555555555555444433322                                                     33455


Q ss_pred             eeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCc
Q 044724          587 GIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNN  666 (782)
Q Consensus       587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  666 (782)
                      .|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|+
T Consensus       128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            5666666665555555566666666666666666555555566666666666666666 455555566666666666666


Q ss_pred             Ccc
Q 044724          667 LSG  669 (782)
Q Consensus       667 l~~  669 (782)
                      +..
T Consensus       207 ~~C  209 (290)
T 1p9a_G          207 WLC  209 (290)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.7e-24  Score=219.93  Aligned_cols=207  Identities=25%  Similarity=0.245  Sum_probs=118.3

Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4444444554444432 1 1344455555555555555432  2455555555555555555555555555566666666


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN  536 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  536 (782)
                      +++|++++..+        ..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..        
T Consensus       116 L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------  179 (272)
T 3rfs_A          116 LVENQLQSLPD--------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------  179 (272)
T ss_dssp             CTTSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             CCCCcCCccCH--------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------
Confidence            66666654443        33455566666666666666555555566666666666666666544433322        


Q ss_pred             CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724          537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH  616 (782)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  616 (782)
                                                                   +++|+.|++++|++++..|..++.+++|+.|+|++
T Consensus       180 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          180 ---------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence                                                         34566666666666666666666677777777777


Q ss_pred             ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724          617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN  655 (782)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  655 (782)
                      |.+.+.       +++|+.|+++.|+++|.+|..++.+.
T Consensus       215 N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          215 NPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            766643       33566677777777777776655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=7.5e-25  Score=235.90  Aligned_cols=266  Identities=17%  Similarity=0.120  Sum_probs=162.7

Q ss_pred             EEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCC----CcccccccccCCCCC-CCCEEEccCccccccCCcccc
Q 044724          325 LLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIP----SSFEGHMFSKNFNLT-NVRWLLLEENHFVGEIPQSLS  399 (782)
Q Consensus       325 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~g~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~  399 (782)
                      .++++.|.++|.+|..+.. .++|++|++++|.+++..+    ..+.        .++ +|++|++++|.+++..+..+.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N~l~~~~~~~l~   72 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFA--------NTPASVTSLNLSGNSLGFKNSDELV   72 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHH--------TCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHH--------hCCCceeEEECcCCCCCHHHHHHHH
Confidence            4577888888777765543 4558888888888876555    3333        566 788888888888776665555


Q ss_pred             CC-----CCCcEEECcCCcccccCCccccC----c-CCCCEEeCCCCccccCCChhccC-----CCCCceEeccCCccee
Q 044724          400 KC-----FLLKGLYLNNNNLSGKIPQWLGN----L-TGLQHIIMPKNHLEGPIPVEFCQ-----LDWLQILDISDNNISG  464 (782)
Q Consensus       400 ~l-----~~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~  464 (782)
                      .+     ++|++|++++|.+++..+..+..    + ++|++|++++|.+++..+..+..     .++|++|++++|++++
T Consensus        73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            53     77888888888877666554433    3 67788888888777666554432     2577777777777764


Q ss_pred             eCCCCccccchhhhcCCC-CCCEEEcCCCcceeecCccc----cCC-CCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724          465 SLPSCFHLLSIEQINGLS-GLSHLILAHNNLEGEVPVQL----CGL-NQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN  538 (782)
Q Consensus       465 ~~p~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  538 (782)
                      ..+..+.    ..+..++ +|++|+|++|++++..+..+    ..+ ++|++|||++|++++.....+...-        
T Consensus       153 ~~~~~l~----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l--------  220 (362)
T 3goz_A          153 KSSDELI----QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF--------  220 (362)
T ss_dssp             SCHHHHH----HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------
T ss_pred             HHHHHHH----HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH--------
Confidence            3332111    2334444 77777777777765554333    334 4777777777777643222111100        


Q ss_pred             CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCC----cccccccccceeec
Q 044724          539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIP----PPIGNLTRIQILNL  614 (782)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L  614 (782)
                                                              ....++|+.|||++|.+++..+    ..+..+++|++|+|
T Consensus       221 ----------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          221 ----------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             ----------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             ----------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence                                                    0002357777777777765433    23455666777777


Q ss_pred             ccccccccC-------CccccCCCCCCEEecCCCccccCCchhh
Q 044724          615 SHNNLTGTI-------PSTFSKLEAYRNLDLSYNKLNGKIPRQL  651 (782)
Q Consensus       615 s~N~l~~~~-------p~~~~~l~~L~~LdLs~N~l~~~ip~~l  651 (782)
                      ++|.+.+..       +..+..+++|+.||+++|++.+..|..+
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            777644332       2345566666777777777665544444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.1e-24  Score=234.51  Aligned_cols=260  Identities=17%  Similarity=0.169  Sum_probs=155.1

Q ss_pred             EEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC----ccccCCC-CCcEEECcCCcccccCCccccC
Q 044724          350 CFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP----QSLSKCF-LLKGLYLNNNNLSGKIPQWLGN  424 (782)
Q Consensus       350 ~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~  424 (782)
                      .++++.|.+++.+|..+.        ..++|++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..
T Consensus         2 ~~~ls~n~~~~~~~~~~~--------~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~   73 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS--------IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ   73 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT--------SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ccccccccchHHHHHHHh--------CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence            345666766666555443        34457777777777765554    5566666 6777777777777666655555


Q ss_pred             c-----CCCCEEeCCCCccccCCChhccC----C-CCCceEeccCCcceeeCCCCccccchhhhcC-CCCCCEEEcCCCc
Q 044724          425 L-----TGLQHIIMPKNHLEGPIPVEFCQ----L-DWLQILDISDNNISGSLPSCFHLLSIEQING-LSGLSHLILAHNN  493 (782)
Q Consensus       425 l-----~~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~-l~~L~~L~L~~N~  493 (782)
                      +     ++|++|++++|.+++..+..+..    + ++|++|++++|++++..+..+.    ..+.. .++|++|+|++|+
T Consensus        74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----QAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHTTSCTTCCEEECTTSC
T ss_pred             HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH----HHHHhCCCceeEEEccCCc
Confidence            4     67777777777777665554333    3 6777777777777654442221    22333 3577777777777


Q ss_pred             ceeec----CccccCCC-CCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724          494 LEGEV----PVQLCGLN-QLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF  568 (782)
Q Consensus       494 l~~~~----~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (782)
                      +++..    +..+..++ +|++|+|++|++++..+..+...-                                      
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------  191 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------  191 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------
Confidence            76432    23334444 677777777777665554443210                                      


Q ss_pred             EecCCeeeecchhh-cccceeeccCCccCcc----CCccccc-ccccceeecccccccccCC----ccccCCCCCCEEec
Q 044724          569 TTKSNAYTYQGRVL-SLLSGIDLSCNKLIGH----IPPPIGN-LTRIQILNLSHNNLTGTIP----STFSKLEAYRNLDL  638 (782)
Q Consensus       569 ~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~LdL  638 (782)
                                 ... ++|+.|||++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|+|
T Consensus       192 -----------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          192 -----------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             -----------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             -----------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence                       001 3567777777777652    3344444 3467777777777765443    33456677777777


Q ss_pred             CCCccccCCc-------hhhhcCCCCcEEEcccCcCccc
Q 044724          639 SYNKLNGKIP-------RQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       639 s~N~l~~~ip-------~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      ++|.+.+..+       ..+..++.|+.||+++|++...
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            7777543332       2455666677777777776655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=221.39  Aligned_cols=81  Identities=30%  Similarity=0.381  Sum_probs=42.9

Q ss_pred             cccceeeccCCccCccCCcccccc---cccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcE
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNL---TRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVV  659 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  659 (782)
                      ++|++|||++|++++.+|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|||++|+|++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            345555555555555445444444   35555555555555 4444443  4566666666666542 22 445555666


Q ss_pred             EEcccCcCc
Q 044724          660 FSFACNNLS  668 (782)
Q Consensus       660 L~ls~N~l~  668 (782)
                      |++++|+++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-23  Score=219.54  Aligned_cols=142  Identities=22%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             CCCCEEEccCccccccCCccc--cCCCCCcEEECcCCcccccCC----ccccCcCCCCEEeCCCCccccCCChhccCCCC
Q 044724          378 TNVRWLLLEENHFVGEIPQSL--SKCFLLKGLYLNNNNLSGKIP----QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDW  451 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  451 (782)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..+..|..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445566666665555555555  555556666666665554333    22334555555555555555555555555555


Q ss_pred             CceEeccCCcceee--CCCCccccchhhhcCCCCCCEEEcCCCcceeecCc----cccCCCCCCEEEccCCcCCCcCCcc
Q 044724          452 LQILDISDNNISGS--LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV----QLCGLNQLQLLDLSDNNLHGLIPPF  525 (782)
Q Consensus       452 L~~L~Ls~N~l~~~--~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~  525 (782)
                      |++|++++|++.+.  ++..      ..++.+++|++|+|++|+++. ++.    .+..+++|++|||++|++++..|..
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAA------LCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTT------SCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCEEECCCCCCccchhhhHH------HhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            55555555554431  1100      112345555555555555541 111    1344555555555555555554443


Q ss_pred             c
Q 044724          526 F  526 (782)
Q Consensus       526 ~  526 (782)
                      +
T Consensus       244 ~  244 (310)
T 4glp_A          244 A  244 (310)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.6e-22  Score=205.75  Aligned_cols=182  Identities=23%  Similarity=0.257  Sum_probs=118.5

Q ss_pred             CCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC
Q 044724          428 LQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ  507 (782)
Q Consensus       428 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  507 (782)
                      .++++++++.++ .+|..+.  ++++.|++++|++++..+        ..+.++++|++|+|++|++++..+..|..+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   84 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE   84 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence            444555555554 2333322  355566666666655444        33455666666666666666555555666666


Q ss_pred             CCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccce
Q 044724          508 LQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSG  587 (782)
Q Consensus       508 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  587 (782)
                      |++|++++|++++..+..+..                                                     +++|+.
T Consensus        85 L~~L~L~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~  111 (251)
T 3m19_A           85 LGTLGLANNQLASLPLGVFDH-----------------------------------------------------LTQLDK  111 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTT-----------------------------------------------------CTTCCE
T ss_pred             CCEEECCCCcccccChhHhcc-----------------------------------------------------cCCCCE
Confidence            666666666666544443322                                                     345667


Q ss_pred             eeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcC
Q 044724          588 IDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL  667 (782)
Q Consensus       588 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  667 (782)
                      |+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            77777777766666677777888888888888876666777888888888888888877777777888888888888888


Q ss_pred             cccCCC
Q 044724          668 SGKIPE  673 (782)
Q Consensus       668 ~~~~p~  673 (782)
                      ++..+.
T Consensus       192 ~c~~~~  197 (251)
T 3m19_A          192 DCSRCE  197 (251)
T ss_dssp             CTTSTT
T ss_pred             eCCccc
Confidence            776444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.6e-24  Score=235.64  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=68.9

Q ss_pred             hcccceeeccCCccC----ccCCcccccccccceeeccccccccc----CCccc--cCCCCCCEEecCCCcccc----CC
Q 044724          582 LSLLSGIDLSCNKLI----GHIPPPIGNLTRIQILNLSHNNLTGT----IPSTF--SKLEAYRNLDLSYNKLNG----KI  647 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~LdLs~N~l~~----~i  647 (782)
                      +++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|++++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            446677777777775    45677777888888888888888765    56666  348888888888888887    47


Q ss_pred             chhh-hcCCCCcEEEcccCcCcccCC
Q 044724          648 PRQL-VELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       648 p~~l-~~l~~L~~L~ls~N~l~~~~p  672 (782)
                      |..+ .++++|++|++++|++++..|
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhcCCCceEEEccCCcCCcchh
Confidence            7777 567888888888888887664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.3e-22  Score=201.90  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             cccceeeccccc-ccccCCccccCC-CCCCEEecCCCccccCCchhhhcCCCCcEEEcccC
Q 044724          607 TRIQILNLSHNN-LTGTIPSTFSKL-EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN  665 (782)
Q Consensus       607 ~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  665 (782)
                      ++|+.|+|++|+ +++..+..|.++ ++|+.||+++|++++ +|..  .+++|+.|+++++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            445555555552 544444445555 555555555555542 2222  3444455554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.2e-24  Score=234.68  Aligned_cols=250  Identities=17%  Similarity=0.208  Sum_probs=183.9

Q ss_pred             cCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCc---cccccCCccc-------cCCCCCc
Q 044724          336 CIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEEN---HFVGEIPQSL-------SKCFLLK  405 (782)
Q Consensus       336 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~  405 (782)
                      .++..+.. +++|+.|++++|.+++..+..+.    ..+..+++|++|++++|   ++++.+|..+       ..+++|+
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~----~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLS----ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHH----HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHH----HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            45666655 67888888888877765433321    11226788888888885   4445555444       6788899


Q ss_pred             EEECcCCcccc----cCCccccCcCCCCEEeCCCCccccCCChhcc----CC---------CCCceEeccCCccee-eCC
Q 044724          406 GLYLNNNNLSG----KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC----QL---------DWLQILDISDNNISG-SLP  467 (782)
Q Consensus       406 ~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~Ls~N~l~~-~~p  467 (782)
                      +|+|++|.+++    .+|..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|+++. .+|
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            99999998886    4677788888999999999988755444433    33         889999999998872 223


Q ss_pred             CCccccchhhhcCCCCCCEEEcCCCccee-----ecCccccCCCCCCEEEccCCcCC----CcCCcccccccccccccCC
Q 044724          468 SCFHLLSIEQINGLSGLSHLILAHNNLEG-----EVPVQLCGLNQLQLLDLSDNNLH----GLIPPFFYNTALHESYNNN  538 (782)
Q Consensus       468 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~~~~~~~  538 (782)
                      . +.    ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..          
T Consensus       178 ~-l~----~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~----------  242 (386)
T 2ca6_A          178 E-WA----KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS----------  242 (386)
T ss_dssp             H-HH----HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----------
T ss_pred             H-HH----HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc----------
Confidence            1 10    246678899999999998872     34447888999999999999886    334443322          


Q ss_pred             CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCcc----CCcccc--ccccccee
Q 044724          539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIG--NLTRIQIL  612 (782)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L  612 (782)
                                                                 +++|+.|+|++|.+++.    +|..+.  .+++|+.|
T Consensus       243 -------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L  279 (386)
T 2ca6_A          243 -------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  279 (386)
T ss_dssp             -------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             -------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence                                                       45789999999999865    566663  48999999


Q ss_pred             ecccccccc----cCCccc-cCCCCCCEEecCCCccccCCc
Q 044724          613 NLSHNNLTG----TIPSTF-SKLEAYRNLDLSYNKLNGKIP  648 (782)
Q Consensus       613 ~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~ip  648 (782)
                      +|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       280 ~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999997    488877 678999999999999998775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=9.8e-24  Score=225.02  Aligned_cols=253  Identities=19%  Similarity=0.219  Sum_probs=139.7

Q ss_pred             CcEEEccCCcCCccCChhhhhcC--CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          323 LRLLDVSNNNFQGCIPVEIGDIL--PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       323 L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ++.++++++.+.   |..+.. +  ++++.|++++|.+.+..+..+         .+++|++|++++|.+++.       
T Consensus        49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~~~---------~~~~L~~L~L~~~~l~~~-------  108 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAEHF---------SPFRVQHMDLSNSVIEVS-------  108 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCSCC---------CCBCCCEEECTTCEECHH-------
T ss_pred             heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchhhc---------cCCCCCEEEccCCCcCHH-------
Confidence            566666666554   222322 3  556666666655554433311         344555555555544433       


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC-cceee-CCCCccccchhhh
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN-NISGS-LPSCFHLLSIEQI  478 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~~~  478 (782)
                                      .++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++        ..+
T Consensus       109 ----------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~--------~~~  164 (336)
T 2ast_B          109 ----------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ--------TLL  164 (336)
T ss_dssp             ----------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH--------HHH
T ss_pred             ----------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH--------HHH
Confidence                            03344444445555555555444444444555555555555555 34431 22        234


Q ss_pred             cCCCCCCEEEcCCC-cceee-cCccccCCC-CCCEEEccCC--cCC-CcCCcccccccccccccCCCCCCCCcccccccc
Q 044724          479 NGLSGLSHLILAHN-NLEGE-VPVQLCGLN-QLQLLDLSDN--NLH-GLIPPFFYNTALHESYNNNSSLDKPFEISFDFR  552 (782)
Q Consensus       479 ~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (782)
                      ..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..                        
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~------------------------  220 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR------------------------  220 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH------------------------
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh------------------------
Confidence            45566666666666 55543 344555666 6666666666  333 122221111                        


Q ss_pred             ccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc-cCccCCcccccccccceeeccccc-ccccCCccccCC
Q 044724          553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK-LIGHIPPPIGNLTRIQILNLSHNN-LTGTIPSTFSKL  630 (782)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l  630 (782)
                                                   +++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++
T Consensus       221 -----------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          221 -----------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             -----------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             -----------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence                                         4467777777777 666666777788888888888885 322222357788


Q ss_pred             CCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCc
Q 044724          631 EAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELT  675 (782)
Q Consensus       631 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~  675 (782)
                      ++|+.|++++| ++...-..+.  ..+..|++++|++++..|...
T Consensus       272 ~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          272 PTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             CCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence            88999999888 4432222232  225555688999998888743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=6.9e-22  Score=201.11  Aligned_cols=181  Identities=23%  Similarity=0.306  Sum_probs=163.8

Q ss_pred             CCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccc
Q 044724          450 DWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNT  529 (782)
Q Consensus       450 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  529 (782)
                      ...++++++++.++ .+|..        +  .++++.|+|++|++++..+..|.++++|++|+|++|++++..|..+.. 
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~--------~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSG--------I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-   81 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSC--------C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-
T ss_pred             CCCeEEecCCCCcc-ccCCC--------C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-
Confidence            45789999999998 56632        2  268999999999999888889999999999999999999877766543 


Q ss_pred             cccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccc
Q 044724          530 ALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI  609 (782)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  609 (782)
                                                                          +++|+.|+|++|++++..+..|+.+++|
T Consensus        82 ----------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           82 ----------------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             ----------------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ----------------------------------------------------CCcCCEEECCCCcccccChhHhcccCCC
Confidence                                                                5589999999999998888899999999


Q ss_pred             ceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCC
Q 044724          610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGN  689 (782)
Q Consensus       610 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gN  689 (782)
                      ++|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++++..|..+..+.+++.+++.+|
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            99999999999888888999999999999999999887778999999999999999999988877888999999999999


Q ss_pred             CCCCC
Q 044724          690 PFLCG  694 (782)
Q Consensus       690 p~lC~  694 (782)
                      |+.|.
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            99998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.6e-23  Score=223.36  Aligned_cols=255  Identities=16%  Similarity=0.161  Sum_probs=192.7

Q ss_pred             CccEEEccCCCCCCCCccCCCCC--CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCccc-CCCcccccccccC
Q 044724          298 QLKSLSLSSGYGDGPFRLPIHSH--KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS-IPSSFEGHMFSKN  374 (782)
Q Consensus       298 ~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~g~~~~~~  374 (782)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. ++. +++|++|++++|.+++. ++..+.       
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~-------  115 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILS-------  115 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHT-------
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHh-------
Confidence            4789999987665   2334444  7899999999999976655 555 89999999999998765 555554       


Q ss_pred             CCCCCCCEEEccCccccccCCccccCCCCCcEEECcCC-ccccc-CCccccCcCCCCEEeCCCC-ccccC-CChhccCCC
Q 044724          375 FNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN-NLSGK-IPQWLGNLTGLQHIIMPKN-HLEGP-IPVEFCQLD  450 (782)
Q Consensus       375 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~  450 (782)
                       .+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++
T Consensus       116 -~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          116 -QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             -TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             -hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence             7899999999999999888888999999999999999 67753 6667888999999999999 88864 577788888


Q ss_pred             -CCceEeccCC--cce-eeCCCCccccchhhhcCCCCCCEEEcCCCc-ceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724          451 -WLQILDISDN--NIS-GSLPSCFHLLSIEQINGLSGLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF  525 (782)
Q Consensus       451 -~L~~L~Ls~N--~l~-~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  525 (782)
                       +|++|++++|  .++ +.+|        ..+..+++|++|++++|. +++..+..+..+++|++|++++|.  +..+..
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~--------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~  264 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLS--------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPET  264 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHH--------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGG
T ss_pred             cCCCEEEeCCCcccCCHHHHH--------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHH
Confidence             9999999999  454 3344        456778899999999998 776777788888999999999886  222222


Q ss_pred             cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724          526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN  605 (782)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (782)
                      +...                                                  ..+++|+.|++++| ++   ...+..
T Consensus       265 ~~~l--------------------------------------------------~~~~~L~~L~l~~~-i~---~~~~~~  290 (336)
T 2ast_B          265 LLEL--------------------------------------------------GEIPTLKTLQVFGI-VP---DGTLQL  290 (336)
T ss_dssp             GGGG--------------------------------------------------GGCTTCCEEECTTS-SC---TTCHHH
T ss_pred             HHHH--------------------------------------------------hcCCCCCEEeccCc-cC---HHHHHH
Confidence            2110                                                  01457788888877 32   224444


Q ss_pred             c-cccceeecccccccccCCccccC
Q 044724          606 L-TRIQILNLSHNNLTGTIPSTFSK  629 (782)
Q Consensus       606 l-~~L~~L~Ls~N~l~~~~p~~~~~  629 (782)
                      + ..++.|++++|++++..|..+++
T Consensus       291 l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          291 LKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             HHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHhhCcceEEecccCccccCCcccc
Confidence            4 34777777777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.5e-22  Score=199.76  Aligned_cols=196  Identities=20%  Similarity=0.237  Sum_probs=128.7

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCc-ccccCCccccCcCCCCEEeCCC-CccccCCChhccCCCCCceEe
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN-LSGKIPQWLGNLTGLQHIIMPK-NHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444455555556666666664 5544444566666666666665 666655556666666666666


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCC---EEEcCCC-cceeecCccccCCCCCC-EEEccCCcCCCcCCcccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLS---HLILAHN-NLEGEVPVQLCGLNQLQ-LLDLSDNNLHGLIPPFFYNTAL  531 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~~~  531 (782)
                      +++|++++ +|.         +..+++|+   +|++++| ++++..+..|.++++|+ +|++++|+++ .+|.....   
T Consensus       112 l~~n~l~~-lp~---------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~---  177 (239)
T 2xwt_C          112 IFNTGLKM-FPD---------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN---  177 (239)
T ss_dssp             EEEECCCS-CCC---------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT---
T ss_pred             CCCCCCcc-ccc---------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC---
Confidence            66666664 442         34455555   7777777 77766666677788888 8888888777 33332111   


Q ss_pred             cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCc-cCccCCcccccc-ccc
Q 044724          532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNK-LIGHIPPPIGNL-TRI  609 (782)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L  609 (782)
                                                                        .++|+.|++++|+ +++..+..|.++ ++|
T Consensus       178 --------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          178 --------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             --------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             --------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence                                                              1357888888884 887777788888 899


Q ss_pred             ceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          610 QILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       610 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                      +.|++++|++++. |..  .+++|+.|+++++
T Consensus       208 ~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          208 SLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             SEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             cEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            9999999999854 443  6778889998876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=7e-22  Score=207.33  Aligned_cols=192  Identities=19%  Similarity=0.329  Sum_probs=105.7

Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++++. +         .+..
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~---------~~~~  105 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S---------AIAG  105 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G---------GGTT
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h---------hhcC
Confidence            4445555555554442 22 34445555555555555543322  55555555555555555431 1         2445


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      +++|++|++++|++++. + .+..+++|++|++++|++++..+  +..                                
T Consensus       106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------------------------  149 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG--------------------------------  149 (308)
T ss_dssp             CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------------
T ss_pred             CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------------
Confidence            55566666666655532 2 25556666666666666554322  111                                


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                           +++|+.|++++|++++. +. +..+++|+.|++++|++++..+  +..+++|+.|++++
T Consensus       150 ---------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          150 ---------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN  204 (308)
T ss_dssp             ---------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred             ---------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence                                 34566666666666643 22 6666667777777776664433  66666777777777


Q ss_pred             CccccCCchhhhcCCCCcEEEcccCcCcc
Q 044724          641 NKLNGKIPRQLVELNAFVVFSFACNNLSG  669 (782)
Q Consensus       641 N~l~~~ip~~l~~l~~L~~L~ls~N~l~~  669 (782)
                      |++++..|  +..+++|++|++++|++++
T Consensus       205 N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          205 NQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CccCcccc--ccCCCCCCEEEccCCeeec
Confidence            77765432  6666777777777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.5e-21  Score=203.07  Aligned_cols=192  Identities=24%  Similarity=0.371  Sum_probs=124.6

Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4555555555555553 22 35556666666666666654333  66666666666666666642  2466667777777


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN  536 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  536 (782)
                      +++|++++. +         .+..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +..        
T Consensus       114 l~~n~l~~~-~---------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~--------  171 (308)
T 1h6u_A          114 LTSTQITDV-T---------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN--------  171 (308)
T ss_dssp             CTTSCCCCC-G---------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------
T ss_pred             CCCCCCCCc-h---------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC--------
Confidence            777776642 2         25666777777777777764433  6677777777777777764322  211        


Q ss_pred             CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724          537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH  616 (782)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  616 (782)
                                                                   +++|+.|++++|++++..+  +..+++|+.|+|++
T Consensus       172 ---------------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          172 ---------------------------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKN  204 (308)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred             ---------------------------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence                                                         4567777777777775433  77788888888888


Q ss_pred             ccccccCCccccCCCCCCEEecCCCcccc
Q 044724          617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNG  645 (782)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  645 (782)
                      |++++..|  +..+++|+.|++++|++++
T Consensus       205 N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          205 NQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CccCcccc--ccCCCCCCEEEccCCeeec
Confidence            88886553  7788888888888888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=6e-21  Score=214.73  Aligned_cols=188  Identities=24%  Similarity=0.315  Sum_probs=125.4

Q ss_pred             CCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          379 NVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       379 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            78888888888876 555442  67888888888887 455   346777778888777776 555 544  77777777


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCC
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN  538 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  538 (782)
                      +|++++ +|        .   .+++|++|++++|++++ +|.   .+++|++|+|++|++++ +|. +.           
T Consensus       129 ~N~l~~-lp--------~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-----------  179 (571)
T 3cvr_A          129 NNQLTM-LP--------E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-----------  179 (571)
T ss_dssp             SSCCSC-CC--------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-----------
T ss_pred             CCcCCC-CC--------C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-----------
Confidence            777775 55        2   45677777777777774 444   45677777777777765 443 21           


Q ss_pred             CCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccc-------ce
Q 044724          539 SSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRI-------QI  611 (782)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~  611 (782)
                                                                  ++|+.|+|++|+|+ .+|. |..  +|       +.
T Consensus       180 --------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~  211 (571)
T 3cvr_A          180 --------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIF  211 (571)
T ss_dssp             --------------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEE
T ss_pred             --------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceE
Confidence                                                        24667777777777 5555 544  55       77


Q ss_pred             eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCC
Q 044724          612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN  655 (782)
Q Consensus       612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  655 (782)
                      |+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            777777777 4666666677777777777777777776666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=4.4e-20  Score=197.55  Aligned_cols=171  Identities=20%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             cEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCC-ccccCCC
Q 044724          324 RLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIP-QSLSKCF  402 (782)
Q Consensus       324 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~  402 (782)
                      +.++.++++++ .+|..+   .+++++|+|++|+++...+.+|.        ++++|++|+|++|++.+.+| .+|.+++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~--------~l~~L~~L~Ls~N~i~~~i~~~~f~~L~   79 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFS--------GFGDLEKIEISQNDVLEVIEADVFSNLP   79 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSST--------TCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHc--------CCCCCCEEECcCCCCCCccChhHhhcch
Confidence            56788888888 788765   35788888888888766555666        67888888888888765544 4567777


Q ss_pred             CCcE-EECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccC-CcceeeCCCCccccchhhhcC
Q 044724          403 LLKG-LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISD-NNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       403 ~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      ++++ +.+++|+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +++....+        ..|..
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------~~f~~  151 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFVG  151 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--------TSSTT
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc--------cchhh
Confidence            7654 55566777776677777777777777777777766666666666677777755 34543333        22333


Q ss_pred             C-CCCCEEEcCCCcceeecCccccCCCCCCEEEccC
Q 044724          481 L-SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD  515 (782)
Q Consensus       481 l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  515 (782)
                      + ..++.|++++|+++...+ ......+|+.+++++
T Consensus       152 ~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          152 LSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSD  186 (350)
T ss_dssp             SBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTT
T ss_pred             cchhhhhhccccccccCCCh-hhccccchhHHhhcc
Confidence            3 346666777777664333 333445566666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.8e-20  Score=199.09  Aligned_cols=135  Identities=21%  Similarity=0.093  Sum_probs=69.6

Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCC-ccccCcCCCCE-EeCCCCccccCCChhccCCCCCceE
Q 044724          378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQH-IIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      +++++|+|++|+++.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.++.|+++...|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            345566666666654444455556666666666665544333 34555555443 3444455555555555566666666


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCC-CcceeecCccccCCC-CCCEEEccCCcCCC
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAH-NNLEGEVPVQLCGLN-QLQLLDLSDNNLHG  520 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~  520 (782)
                      ++++|++++..+        ..+....++..|++.+ +++....+..|..+. .++.|++++|+++.
T Consensus       110 ~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X          110 LISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             EEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccCCc--------hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            666665553333        2223334455555533 344444444444443 35556666665553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.4e-20  Score=181.96  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=11.5

Q ss_pred             ccceeecccccccccCCccccCCC
Q 044724          608 RIQILNLSHNNLTGTIPSTFSKLE  631 (782)
Q Consensus       608 ~L~~L~Ls~N~l~~~~p~~~~~l~  631 (782)
                      +|+.|+++.|+++|.+|..++.++
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CHHHHHHHHHhCCceeeccCcccc
Confidence            344444555555555554444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.4e-20  Score=180.80  Aligned_cols=134  Identities=24%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724          378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI  457 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  457 (782)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34555555555555444444455555555555555555444444455555555555555555444444455555555555


Q ss_pred             cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724          458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      ++|++++..+        ..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus       108 ~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          108 NTNQLQSLPD--------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCcCcccCH--------hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            5555543333        22344455555555555555444444445555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.9e-20  Score=207.36  Aligned_cols=134  Identities=26%  Similarity=0.378  Sum_probs=66.5

Q ss_pred             CCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC
Q 044724          347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT  426 (782)
Q Consensus       347 ~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  426 (782)
                      +|+.|++++|.+++ +|..+          .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +.+  
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l----------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL----------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--  120 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC----------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred             CccEEEeCCCCCCc-cCHhH----------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence            55555555555543 33321          134555555555555 333   234455555555555554 443 333  


Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN  506 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  506 (782)
                      +|++|++++|++++ +|.   .+++|+.|++++|++++ +|        .   .+++|++|+|++|++++ +|. |.  +
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp--------~---~l~~L~~L~Ls~N~L~~-lp~-l~--~  180 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LP--------E---LPTSLEVLSVRNNQLTF-LPE-LP--E  180 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC--------C---CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CC--------C---cCCCcCEEECCCCCCCC-cch-hh--C
Confidence            55555555555554 333   34555555555555553 34        1   23455555555555553 333 33  5


Q ss_pred             CCCEEEccCCcCC
Q 044724          507 QLQLLDLSDNNLH  519 (782)
Q Consensus       507 ~L~~L~Ls~N~l~  519 (782)
                      +|+.|+|++|+|+
T Consensus       181 ~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          181 SLEALDVSTNLLE  193 (571)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECcCCCCC
Confidence            5555555555555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=4.6e-20  Score=183.22  Aligned_cols=152  Identities=23%  Similarity=0.308  Sum_probs=81.1

Q ss_pred             ceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccc
Q 044724          453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALH  532 (782)
Q Consensus       453 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  532 (782)
                      +.++++++.++ .+|..        +  .+++++|++++|++++..+..|..+++|++|+|++|++++..|..|..    
T Consensus        14 ~~v~c~~~~l~-~iP~~--------l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~----   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTN--------L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSS--------C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT----
T ss_pred             CEEEcCCCCcC-cCCCc--------c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC----
Confidence            45666666665 34421        1  145666666666666555555666666666666666655544444332    


Q ss_pred             ccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccccccccee
Q 044724          533 ESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQIL  612 (782)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  612 (782)
                                                                       +++|++|+|++|++++..+..|.++++|++|
T Consensus        79 -------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           79 -------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             -------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             -------------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence                                                             2345555555555554444444555555555


Q ss_pred             ecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCc
Q 044724          613 NLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLS  668 (782)
Q Consensus       613 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  668 (782)
                      +|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            55555555555555555555555555555555444444555555555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=2.9e-20  Score=199.75  Aligned_cols=112  Identities=20%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhh---hcCCCCcEE
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQL---VELNAFVVF  660 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L  660 (782)
                      +|+.|||++|++++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|   ..+++|++|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            34444444444444444444445555555555555554444455555555555555555553222222   334555555


Q ss_pred             EcccCcCcccCCCCccccCC--CCcccccCCCCCCCC
Q 044724          661 SFACNNLSGKIPELTAQFAT--FNESSYKGNPFLCGL  695 (782)
Q Consensus       661 ~ls~N~l~~~~p~~~~~~~~--l~~~~~~gNp~lC~~  695 (782)
                      +|++|+|++..+..+..+..  +..+++.+||+.|+|
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            55555555433322223322  244556666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=8.3e-20  Score=181.34  Aligned_cols=156  Identities=21%  Similarity=0.228  Sum_probs=115.6

Q ss_pred             ceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC-ccccCCCCCCEEEccCCcCCCcCCcccccccc
Q 044724          453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL  531 (782)
Q Consensus       453 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  531 (782)
                      +.+++++|.++ .+|..        +  .+.+++|+|++|++++..+ ..|..+++|++|+|++|++++..+..+..   
T Consensus        14 ~~l~~s~n~l~-~iP~~--------~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEH--------I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSC--------C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---
T ss_pred             CEeEeCCCCcc-cCccC--------C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---
Confidence            57888888887 45632        1  2456788888888876644 45777888888888888887666555433   


Q ss_pred             cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccce
Q 044724          532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQI  611 (782)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  611 (782)
                                                                        +++|+.|+|++|++++..|..|..+++|++
T Consensus        80 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           80 --------------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             --------------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence                                                              446778888888887777777778888888


Q ss_pred             eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724          612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p  672 (782)
                      |+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8888888887777778888888888888888887777778888888888888887776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=6.1e-19  Score=176.31  Aligned_cols=156  Identities=22%  Similarity=0.214  Sum_probs=104.8

Q ss_pred             CceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccc
Q 044724          452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL  531 (782)
Q Consensus       452 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  531 (782)
                      .+.++.+++.++ .+|..          -.++|++|+|++|++++..|..|..+++|++|+|++|+++...+..+..   
T Consensus        21 ~~~v~c~~~~l~-~ip~~----------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAG----------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSC----------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---
T ss_pred             CCEeEccCCCcC-ccCCC----------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc---
Confidence            456777777776 45521          1267777777777777766777777777777777777776444433322   


Q ss_pred             cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccce
Q 044724          532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQI  611 (782)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  611 (782)
                                                                        +++|+.|+|++|++++..+..|..+++|++
T Consensus        87 --------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           87 --------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             --------------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence                                                              446777777777777666666677777777


Q ss_pred             eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCC
Q 044724          612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p  672 (782)
                      |+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus       117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             EeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            777777777 566667777777777777777776555666777777777777777766544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=172.66  Aligned_cols=157  Identities=18%  Similarity=0.255  Sum_probs=126.4

Q ss_pred             CEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCC
Q 044724          429 QHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL  508 (782)
Q Consensus       429 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  508 (782)
                      +++++++|.++. +|..+.  +.+++|++++|++++..|.       ..|..+++|++|+|++|++++..+..|.++++|
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~-------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEAT-------GIFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCC-------CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCch-------hhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            356666666653 444332  3467788888888766553       346778888888888888887777788888999


Q ss_pred             CEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhccccee
Q 044724          509 QLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGI  588 (782)
Q Consensus       509 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  588 (782)
                      ++|+|++|++++..|..+..                                                     +++|++|
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------l~~L~~L  110 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKG-----------------------------------------------------LESLKTL  110 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTT-----------------------------------------------------CSSCCEE
T ss_pred             CEEECCCCccCccCHhHhcC-----------------------------------------------------CcCCCEE
Confidence            99999999988776665543                                                     4578899


Q ss_pred             eccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCc
Q 044724          589 DLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP  648 (782)
Q Consensus       589 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  648 (782)
                      +|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999998889999999999999999999999999999999999999999999987655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.6e-18  Score=180.06  Aligned_cols=171  Identities=22%  Similarity=0.351  Sum_probs=106.3

Q ss_pred             CcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724          424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC  503 (782)
Q Consensus       424 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  503 (782)
                      .+++|++|++++|.++.. + .+..+++|++|++++|++++. +         .+..+++|++|++++|++++ ++ .+.
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~---------~l~~l~~L~~L~l~~n~l~~-~~-~l~  109 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K---------PLANLKNLGWLFLDENKVKD-LS-SLK  109 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G---------GGTTCTTCCEEECCSSCCCC-GG-GGT
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-c---------ccccCCCCCEEECCCCcCCC-Ch-hhc
Confidence            444555555555555432 2 245555555555555555532 2         14455666666666666653 22 366


Q ss_pred             CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhc
Q 044724          504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS  583 (782)
Q Consensus       504 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (782)
                      .+++|++|++++|++++. + .+..                                                     ++
T Consensus       110 ~l~~L~~L~L~~n~i~~~-~-~l~~-----------------------------------------------------l~  134 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDI-N-GLVH-----------------------------------------------------LP  134 (291)
T ss_dssp             TCTTCCEEECTTSCCCCC-G-GGGG-----------------------------------------------------CT
T ss_pred             cCCCCCEEECCCCcCCCC-h-hhcC-----------------------------------------------------CC
Confidence            666666666666666542 1 1111                                                     44


Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      +|+.|++++|++++.  ..++.+++|+.|+|++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus       135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (291)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence            667777777777654  467777788888888888876554  7778888888888888875 34 37778888888888


Q ss_pred             cCcCcc
Q 044724          664 CNNLSG  669 (782)
Q Consensus       664 ~N~l~~  669 (782)
                      +|+++.
T Consensus       209 ~n~i~~  214 (291)
T 1h6t_A          209 SQECLN  214 (291)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            887765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.4e-18  Score=172.40  Aligned_cols=113  Identities=25%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      +|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|++++..|..|..+++|++|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            45555555555555555555555555555555555554444445555555555555555555555555555555555555


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +|++++..+..+..+.+++.+++.+||+.|+|.
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            555555554444445555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=187.52  Aligned_cols=108  Identities=21%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             cEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhcc-CCCCCceEeccCCcceeeCCCCccccchhhhcCCCC
Q 044724          405 KGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFC-QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG  483 (782)
Q Consensus       405 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~  483 (782)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+..|. ++++|++|+|++|++++..|        ..|..+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~--------~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--------EAFVPVPN   89 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT--------TTTTTCTT
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh--------hhccCCCC
Confidence            45666666665 3443332  2355555555555555554454 55555555555555554444        23444555


Q ss_pred             CCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCC
Q 044724          484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIP  523 (782)
Q Consensus       484 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  523 (782)
                      |++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  129 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR  129 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence            5555555555554444445555555555555555544333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.1e-18  Score=181.17  Aligned_cols=172  Identities=23%  Similarity=0.348  Sum_probs=115.5

Q ss_pred             cCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh
Q 044724          399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI  478 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  478 (782)
                      ..+++|++|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +|         .+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~---------~l  108 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS---------SL  108 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG---------GG
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch---------hh
Confidence            3455566666666666533 2 35566666666666666665433  6666677777777776654 22         35


Q ss_pred             cCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccc
Q 044724          479 NGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKV  558 (782)
Q Consensus       479 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (782)
                      ..+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..                              
T Consensus       109 ~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~------------------------------  154 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------------------  154 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG------------------------------
T ss_pred             ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc------------------------------
Confidence            6677777777777777643  3566777777788877777653  22211                              


Q ss_pred             ccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEec
Q 044724          559 EKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDL  638 (782)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  638 (782)
                                             +++|+.|++++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|++
T Consensus       155 -----------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          155 -----------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (291)
T ss_dssp             -----------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             -----------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence                                   4567888888888876544  7888888888888888885 34 3788888888888


Q ss_pred             CCCcccc
Q 044724          639 SYNKLNG  645 (782)
Q Consensus       639 s~N~l~~  645 (782)
                      ++|+++.
T Consensus       208 ~~n~i~~  214 (291)
T 1h6t_A          208 FSQECLN  214 (291)
T ss_dssp             EEEEEEC
T ss_pred             cCCcccC
Confidence            8888875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=8.7e-21  Score=214.74  Aligned_cols=89  Identities=27%  Similarity=0.405  Sum_probs=63.6

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCC-chhhhcCCCCcEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKI-PRQLVELNAFVVF  660 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L  660 (782)
                      +++|+.|+|++|.++ .+|..|+.+++|+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.+ |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            446677777777777 667777777777777777777775 55 6777777777777777777665 7777777777777


Q ss_pred             EcccCcCcccCCC
Q 044724          661 SFACNNLSGKIPE  673 (782)
Q Consensus       661 ~ls~N~l~~~~p~  673 (782)
                      ++++|++++.+|.
T Consensus       539 ~L~~N~l~~~~~~  551 (567)
T 1dce_A          539 NLQGNSLCQEEGI  551 (567)
T ss_dssp             ECTTSGGGGSSSC
T ss_pred             EecCCcCCCCccH
Confidence            7777777776664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=5.6e-21  Score=216.30  Aligned_cols=203  Identities=23%  Similarity=0.153  Sum_probs=144.1

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCc-------------ccccCCccccCcCCCCEEe-CCCCccccC
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNN-------------LSGKIPQWLGNLTGLQHII-MPKNHLEGP  441 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~  441 (782)
                      .+++|+.|+|++|+++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+   
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence            4555666666666655 455556666666666665443             2233333444444444444 333221   


Q ss_pred             CChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724          442 IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       442 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                              ..|+.+.+++|.++.. |             ...|+.|+|++|++++ +|. +..+++|+.|+|++|+++ .
T Consensus       423 --------~~L~~l~l~~n~i~~l-~-------------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKM-E-------------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHH-H-------------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred             --------chhhhhhhhccccccc-C-------------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence                    1233334444444421 1             1358999999999995 665 999999999999999999 7


Q ss_pred             CCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCc
Q 044724          522 IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP  601 (782)
Q Consensus       522 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  601 (782)
                      +|..+..                                                     +++|+.|+|++|++++ +| 
T Consensus       478 lp~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~-lp-  502 (567)
T 1dce_A          478 LPPALAA-----------------------------------------------------LRCLEVLQASDNALEN-VD-  502 (567)
T ss_dssp             CCGGGGG-----------------------------------------------------CTTCCEEECCSSCCCC-CG-
T ss_pred             cchhhhc-----------------------------------------------------CCCCCEEECCCCCCCC-Cc-
Confidence            7776654                                                     5689999999999997 67 


Q ss_pred             ccccccccceeecccccccccC-CccccCCCCCCEEecCCCccccCCch---hhhcCCCCcEEEc
Q 044724          602 PIGNLTRIQILNLSHNNLTGTI-PSTFSKLEAYRNLDLSYNKLNGKIPR---QLVELNAFVVFSF  662 (782)
Q Consensus       602 ~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip~---~l~~l~~L~~L~l  662 (782)
                      .++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.   .+..+++|+.||+
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8999999999999999999887 99999999999999999999987653   2455899999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=2.6e-18  Score=195.62  Aligned_cols=125  Identities=21%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEec
Q 044724          378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDI  457 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  457 (782)
                      ..+..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            334445555555554332  34555666666666666532 2 35556666666666666654433  555666666666


Q ss_pred             cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724          458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                      ++|++++ +|         .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++
T Consensus        95 s~N~l~~-l~---------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A           95 DENKIKD-LS---------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             CSSCCCC-CT---------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             cCCCCCC-Ch---------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence            6666553 22         244555555555555555532  234555555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.5e-18  Score=195.72  Aligned_cols=169  Identities=23%  Similarity=0.328  Sum_probs=119.6

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ..+..+.+..+.+.+.++.  .. +++|+.|++++|.+... + .+.        .+++|+.|+|++|.+++..+  +..
T Consensus        21 ~~l~~l~l~~~~i~~~~~~--~~-L~~L~~L~l~~n~i~~l-~-~l~--------~l~~L~~L~Ls~N~l~~~~~--l~~   85 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSV-Q-GIQ--------YLPNVTKLFLNGNKLTDIKP--LTN   85 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH--HH-HTTCCCCBCTTCCCCCC-T-TGG--------GCTTCCEEECTTSCCCCCGG--GGG
T ss_pred             HHHHHHhccCCCcccccch--hc-CCCCCEEECcCCCCCCC-h-HHc--------cCCCCCEEEeeCCCCCCChh--hcc
Confidence            3455666777777644442  23 67888888888887643 2 233        67888888888888876544  777


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +++|+.|+|++|.+.+ +| .+..+++|++|+|++|.+++.  ..+..+++|+.|+|++|++++.          ..+..
T Consensus        86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----------~~l~~  151 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----------TVLSR  151 (605)
T ss_dssp             CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------GGGGS
T ss_pred             CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----------hhhcc
Confidence            8888888888888874 23 577778888888888887753  4577777888888888877753          24567


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCC
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG  520 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  520 (782)
                      +++|+.|+|++|++++..|  +..+++|+.|+|++|++++
T Consensus       152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            7778888888887776555  7777778888888777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=6.6e-18  Score=168.77  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=54.3

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      +|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+++
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD  143 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence            4445555555554333344445555555555555555444444445555555555555554 444444555555555555


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGL  695 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~  695 (782)
                      +|++++..+..+..+.+++.+++.+||+.|+|
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            55555444443444444445555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.3e-17  Score=161.72  Aligned_cols=114  Identities=23%  Similarity=0.329  Sum_probs=105.8

Q ss_pred             ccceeeccCCccCccCCc-ccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          584 LLSGIDLSCNKLIGHIPP-PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      +++.|++++|++++..+. .|+.+++|++|+|++|+|++.+|..|+++++|++|+|++|+|++..|..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            588999999999977765 5899999999999999999999999999999999999999999998888999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      ++|++++.+|..+..+.+++.+++.+||+.|+|++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99999999998888899999999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=7e-18  Score=163.63  Aligned_cols=91  Identities=24%  Similarity=0.362  Sum_probs=65.3

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      +++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            44566777777777766677777777777777777777777666677777777777777777777777777777777777


Q ss_pred             cccCcCcccCC
Q 044724          662 FACNNLSGKIP  672 (782)
Q Consensus       662 ls~N~l~~~~p  672 (782)
                      +++|++++..+
T Consensus       133 L~~N~l~c~c~  143 (192)
T 1w8a_A          133 LASNPFNCNCH  143 (192)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eCCCCccCcCc
Confidence            77777776554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.6e-17  Score=161.94  Aligned_cols=81  Identities=16%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             ccceeeccCCccCccCCcccccccccceeeccccc-ccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNN-LTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      +|+.|++++|++++..|..++.+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence            34444444444444344444455555555555554 33 333 35555555555555555553 22 4555555555555


Q ss_pred             ccCcCc
Q 044724          663 ACNNLS  668 (782)
Q Consensus       663 s~N~l~  668 (782)
                      ++|++.
T Consensus       189 ~~N~i~  194 (197)
T 4ezg_A          189 FSQTIG  194 (197)
T ss_dssp             CBC---
T ss_pred             eCcccC
Confidence            555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.1e-17  Score=170.80  Aligned_cols=170  Identities=22%  Similarity=0.267  Sum_probs=108.9

Q ss_pred             cCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccC
Q 044724          425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG  504 (782)
Q Consensus       425 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  504 (782)
                      +.++..+++++|.+++..  .+..+++|++|++++|.++. +|         .+..+++|++|++++|++++..+  +..
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~---------~l~~l~~L~~L~L~~N~i~~~~~--l~~   83 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA---------GMQFFTNLKELHLSHNQISDLSP--LKD   83 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT---------TGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch---------HHhhCCCCCEEECCCCccCCChh--hcc
Confidence            334445555555555322  34555566666666666552 22         24456666666666666664433  666


Q ss_pred             CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcc
Q 044724          505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSL  584 (782)
Q Consensus       505 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (782)
                      +++|++|++++|++++. |...                                                       .++
T Consensus        84 l~~L~~L~L~~N~l~~l-~~~~-------------------------------------------------------~~~  107 (263)
T 1xeu_A           84 LTKLEELSVNRNRLKNL-NGIP-------------------------------------------------------SAC  107 (263)
T ss_dssp             CSSCCEEECCSSCCSCC-TTCC-------------------------------------------------------CSS
T ss_pred             CCCCCEEECCCCccCCc-Cccc-------------------------------------------------------cCc
Confidence            77777777777776642 2110                                                       025


Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                      |+.|++++|++++.  +.++.+++|+.|+|++|++++. | .++.+++|+.|++++|++++.  ..+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            67777777777753  3577778888888888888754 3 577788888888888888765  5677788888888888


Q ss_pred             CcCccc
Q 044724          665 NNLSGK  670 (782)
Q Consensus       665 N~l~~~  670 (782)
                      |++++.
T Consensus       182 N~~~~~  187 (263)
T 1xeu_A          182 QKCVNE  187 (263)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.8e-18  Score=199.25  Aligned_cols=157  Identities=21%  Similarity=0.242  Sum_probs=89.2

Q ss_pred             CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc---------cCCccccCCCCCcEEECcCCcccc
Q 044724          346 PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG---------EIPQSLSKCFLLKGLYLNNNNLSG  416 (782)
Q Consensus       346 ~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~Ls~N~l~~  416 (782)
                      +.++.|++..|.+... +.             ..++.++|+.|.+.+         ..+..+..++.|+.|+|++|.+. 
T Consensus       173 ~~~~~l~L~~n~~~~~-~~-------------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-  237 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQ-------------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-  237 (727)
T ss_dssp             ---------------------------------------------------------------CCCCCCEEECTTSCCS-
T ss_pred             CccceEEeeCCCCCcc-hh-------------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-
Confidence            5678888888887753 22             223334444443332         34666777778888888888877 


Q ss_pred             cCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCccee
Q 044724          417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG  496 (782)
Q Consensus       417 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  496 (782)
                      .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+++ .+|        ..++.+++|++|+|++|.++ 
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--------~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP--------AELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC--------SSGGGGTTCSEEECCSSCCC-
T ss_pred             CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC--------hhhcCCCCCCEEECCCCCCC-
Confidence            56666667788888888888887 67777788888888888888887 667        45567778888888888776 


Q ss_pred             ecCccccCCCCCCEEEccCCcCCCcCCccccc
Q 044724          497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN  528 (782)
Q Consensus       497 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  528 (782)
                      .+|..|..+++|++|+|++|++++.+|..+..
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            66777778888888888888887777766543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=4.5e-18  Score=198.67  Aligned_cols=137  Identities=26%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      .++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            4566666666666665 44444555666666666666665 55556666666666666666666 456666666666666


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCC-CCEEEccCCcCCCcCCc
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQ-LQLLDLSDNNLHGLIPP  524 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~  524 (782)
                      +|++|.++ .+|        ..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus       299 ~L~~N~l~-~lp--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          299 YFFDNMVT-TLP--------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             ECCSSCCC-CCC--------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ECCCCCCC-ccC--------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            66666665 445        23455666666666666666555555433211 12345555655555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.9e-17  Score=158.29  Aligned_cols=114  Identities=21%  Similarity=0.370  Sum_probs=107.0

Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ++++.|++++|+++ .+|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            36889999999998 78899999999999999999999998999999999999999999999998899999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      ++|++++..+..+..+.+++.+++.+||+.|+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999988887788899999999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.8e-16  Score=154.47  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        65 l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            4444444444443321  12344455555555555555544444555555555555555555554455555555555555


Q ss_pred             ccCCc-ceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724          457 ISDNN-ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       457 Ls~N~-l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      +++|+ ++ .+|         .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus       143 L~~n~~i~-~~~---------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          143 LSYNGAIT-DIM---------PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSCTBCC-CCG---------GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ccCCCCcc-ccH---------hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            55555 33 222         24455556666666666553 22 4555666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=9.1e-17  Score=164.04  Aligned_cols=170  Identities=20%  Similarity=0.244  Sum_probs=128.3

Q ss_pred             CCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcccc
Q 044724          320 HKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLS  399 (782)
Q Consensus       320 ~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  399 (782)
                      +.+++.+++++|.++ .++ .+.. +++|+.|++++|.++.. + .+.        .+++|++|++++|++++..+  +.
T Consensus        18 l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~--------~l~~L~~L~L~~N~i~~~~~--l~   82 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQ--------FFTNLKELHLSHNQISDLSP--LK   82 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGG--------GCTTCCEEECCSSCCCCCGG--GT
T ss_pred             HHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHh--------hCCCCCEEECCCCccCCChh--hc
Confidence            455677778888777 444 3444 78888888888887643 3 333        67888888888888886544  78


Q ss_pred             CCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhc
Q 044724          400 KCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQIN  479 (782)
Q Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  479 (782)
                      .+++|++|++++|++++. |. +.. ++|++|++++|++++.  ..+..+++|++|++++|++++. +         .+.
T Consensus        83 ~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~---------~l~  147 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V---------MLG  147 (263)
T ss_dssp             TCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G---------GGG
T ss_pred             cCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h---------HHc
Confidence            888888888888888753 33 223 7888888888888864  3588888899999999888754 3         367


Q ss_pred             CCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724          480 GLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       480 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                      .+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            788899999999988865  6688888999999999988765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.7e-16  Score=168.01  Aligned_cols=288  Identities=12%  Similarity=0.074  Sum_probs=150.1

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCc--ccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALD--GSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL  398 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  398 (782)
                      .+++.|+++++ +.+.--..+...+++|+.|||++|++.  ...+..           ++.++.+.+..|.+   .+.+|
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-----------~~~~~~~~~~~~~I---~~~aF   89 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-----------YPNGKFYIYMANFV---PAYAF   89 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-----------SGGGCCEEECTTEE---CTTTT
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-----------cccccccccccccc---CHHHh
Confidence            45677777654 221111123222577888888888776  222111           22234444444432   23445


Q ss_pred             cC--------CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCc
Q 044724          399 SK--------CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF  470 (782)
Q Consensus       399 ~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  470 (782)
                      .+        +++|+.|+|.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+....... .+
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i  167 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW  167 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc
Confidence            55        77888888877 7776666677788888888888887777777777777777766665533210000 00


Q ss_pred             cccchhhhcCCCCCC-EEEcCCCc-ceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccc
Q 044724          471 HLLSIEQINGLSGLS-HLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEIS  548 (782)
Q Consensus       471 ~~~~~~~~~~l~~L~-~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  548 (782)
                      ..   ..|..+..|+ .+.+.... +.......-....+++.+.+.++-.. .   .+...                   
T Consensus       168 ~~---~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~---~~~~l-------------------  221 (329)
T 3sb4_A          168 EH---FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-A---DFKLI-------------------  221 (329)
T ss_dssp             TT---SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-H---HHHHH-------------------
T ss_pred             cc---cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-H---HHHHH-------------------
Confidence            00   2234455555 34333221 11000011112334445544433110 0   00000                   


Q ss_pred             ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCcccc
Q 044724          549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS  628 (782)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  628 (782)
                                                    ...+++|+.++|++|+++...+.+|.++++|+.|+|++| ++.+.+.+|.
T Consensus       222 ------------------------------~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~  270 (329)
T 3sb4_A          222 ------------------------------RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS  270 (329)
T ss_dssp             ------------------------------HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             ------------------------------HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence                                          001345666666666666555556666666666666665 5555555666


Q ss_pred             CCCCCC-EEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCc
Q 044724          629 KLEAYR-NLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNE  683 (782)
Q Consensus       629 ~l~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~  683 (782)
                      ++++|+ .+++.+ +++...+.+|.++++|+.+++++|+++...+..+..+.+++.
T Consensus       271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            666666 666666 555455566666666666666666666555554544444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=6.3e-16  Score=146.41  Aligned_cols=135  Identities=20%  Similarity=0.222  Sum_probs=97.5

Q ss_pred             CCCCCEEEcCCCcce-eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       481 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      .++|++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            366777777777776 56666667777777777777777654  22211                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccC-CccccCCCCCCEEec
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTI-PSTFSKLEAYRNLDL  638 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdL  638 (782)
                                            +++|+.|++++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|+.|++
T Consensus        70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                  456777888888877767777777888888888888887542 267788888888888


Q ss_pred             CCCccccCCc---hhhhcCCCCcEEEcccCcCccc
Q 044724          639 SYNKLNGKIP---RQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       639 s~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      ++|++++..+   ..+..+++|++|++++|.+...
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            8888886555   4778888888888888877643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=1.5e-15  Score=145.05  Aligned_cols=114  Identities=23%  Similarity=0.286  Sum_probs=104.8

Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ++|+.|++++|++++..+..|+.+++|++|+|++|++++..+..|+++++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            46899999999999887788899999999999999999888888999999999999999999888888999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      ++|++++..+..+..+.+++.+++.+||+.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999998877766788999999999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=145.06  Aligned_cols=129  Identities=26%  Similarity=0.302  Sum_probs=101.1

Q ss_pred             CEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccccccc
Q 044724          485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHE  564 (782)
Q Consensus       485 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (782)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..+..                                    
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------   52 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------   52 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence            46777777776 4554442  57888888888876 45544433                                    


Q ss_pred             EEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          565 IFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                                       +++|+.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|+
T Consensus        53 -----------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           53 -----------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             -----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence                             456888888888888777788888889999999999999888888889999999999999998


Q ss_pred             cCCchhhhcCCCCcEEEcccCcCccc
Q 044724          645 GKIPRQLVELNAFVVFSFACNNLSGK  670 (782)
Q Consensus       645 ~~ip~~l~~l~~L~~L~ls~N~l~~~  670 (782)
                      +..+..|..+++|++|++++|++.+.
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          116 VVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             eeChhhhhcCccccEEEeCCCCeecC
Confidence            76666788899999999999988753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.6e-16  Score=143.06  Aligned_cols=129  Identities=19%  Similarity=0.217  Sum_probs=97.1

Q ss_pred             CCCCCEEEcCCCcce-eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVE  559 (782)
Q Consensus       481 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (782)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            466778888888877 66777777788888888888877754  22211                               


Q ss_pred             cccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccccc-CCccccCCCCCCEEec
Q 044724          560 KKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT-IPSTFSKLEAYRNLDL  638 (782)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdL  638 (782)
                                            +++|+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++
T Consensus        63 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           63 ----------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ----------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ----------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                  45678888888888877777777788888888888888863 3477888888888888


Q ss_pred             CCCccccCCc---hhhhcCCCCcEEEccc
Q 044724          639 SYNKLNGKIP---RQLVELNAFVVFSFAC  664 (782)
Q Consensus       639 s~N~l~~~ip---~~l~~l~~L~~L~ls~  664 (782)
                      ++|++++..+   ..+..+++|++|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888887665   5788888888888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=4e-15  Score=142.16  Aligned_cols=92  Identities=24%  Similarity=0.290  Sum_probs=69.0

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      +++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34577777777777766666677778888888888888877777777888888888888888766665667788888888


Q ss_pred             cccCcCcccCCC
Q 044724          662 FACNNLSGKIPE  673 (782)
Q Consensus       662 ls~N~l~~~~p~  673 (782)
                      +++|++++..|.
T Consensus       131 l~~N~~~~~~~~  142 (177)
T 2o6r_A          131 LHTNPWDCSCPR  142 (177)
T ss_dssp             CCSSCBCCCHHH
T ss_pred             ecCCCeeccCcc
Confidence            888888776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=6.8e-14  Score=151.26  Aligned_cols=265  Identities=13%  Similarity=0.161  Sum_probs=192.2

Q ss_pred             CCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      ..++.+.+.+ .++ .++...+.. .+|+.+.+..+ ++.....+|.        + .+|+.+.+.. .++.+.+.+|.+
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~--------~-~~L~~i~lp~-~l~~I~~~aF~~  178 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFF--------N-STVQEIVFPS-TLEQLKEDIFYY  178 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTT--------T-CCCCEEECCT-TCCEECSSTTTT
T ss_pred             CCccEEEECC-ccC-EehHhhccc-CCccEEEeCCC-ccEECHHhcC--------C-CCceEEEeCC-CccEehHHHhhC
Confidence            4566666654 344 555555553 47888888765 6555555555        3 3688888875 666667778888


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      |.+|+.+++++|+++......|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..| ++..-.        ..|.+
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~  247 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE  247 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc
Confidence            89999999988888866556666 588999998854 77677888999999999999875 443433        34555


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc-----CCcccccccccccccCCCCCCCCccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL-----IPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE  555 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (782)
                       .+|+.+.+ .+.++.....+|.+|++|+.+++.+|.+...     .+..|.                            
T Consensus       248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~----------------------------  297 (401)
T 4fdw_A          248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE----------------------------  297 (401)
T ss_dssp             -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT----------------------------
T ss_pred             -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh----------------------------
Confidence             68999999 4556667788899999999999988876511     111111                            


Q ss_pred             cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCE
Q 044724          556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRN  635 (782)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  635 (782)
                                               .+++|+.+++. +.++..-..+|.++++|+.++|..| ++...+.+|.++ +|+.
T Consensus       298 -------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          298 -------------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             -------------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred             -------------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence                                     15678888888 4477666778888899999998655 776777888888 8999


Q ss_pred             EecCCCccccCCchhhhcCC-CCcEEEcccCcCc
Q 044724          636 LDLSYNKLNGKIPRQLVELN-AFVVFSFACNNLS  668 (782)
Q Consensus       636 LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~  668 (782)
                      +++++|.+....+..|..++ .++.+.+..|.+.
T Consensus       350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            99999888876677777774 6788888776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.2e-15  Score=141.47  Aligned_cols=133  Identities=24%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             CCCCEEEccCcccc-ccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          378 TNVRWLLLEENHFV-GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       378 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 34444445555555555555555433  4455555555555555555554555555555555555


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC---ccccCCCCCCEEEccCCcCC
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP---VQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      +++|++++..+.       ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~-------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTL-------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGG-------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhH-------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555532110       234555666666666666654333   35566666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=4.8e-15  Score=156.87  Aligned_cols=76  Identities=17%  Similarity=0.057  Sum_probs=41.2

Q ss_pred             ccceeeccCCccCccCCcccccccccc-eeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEE
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQ-ILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS  661 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  661 (782)
                      +|+.++|++| ++..-+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            3444444444 4434444555555555 555555 45544455566666666666666666555555566666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.6e-15  Score=138.99  Aligned_cols=129  Identities=23%  Similarity=0.186  Sum_probs=85.4

Q ss_pred             CCCCCEEEccCcccc-ccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          377 LTNVRWLLLEENHFV-GEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       377 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            355666666666666 55666666666777777777766654  556667777777777777776666666667777777


Q ss_pred             eccCCcceee-CCCCccccchhhhcCCCCCCEEEcCCCcceeecC---ccccCCCCCCEEEccC
Q 044724          456 DISDNNISGS-LPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP---VQLCGLNQLQLLDLSD  515 (782)
Q Consensus       456 ~Ls~N~l~~~-~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~  515 (782)
                      ++++|++++. .+        ..++.+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTI--------EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHH--------GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHH--------HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777776642 22        345667777777777777765544   4567777777777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=2.5e-13  Score=146.87  Aligned_cols=249  Identities=9%  Similarity=0.060  Sum_probs=183.7

Q ss_pred             ccCCCCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCcccccc
Q 044724          314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGE  393 (782)
Q Consensus       314 ~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~  393 (782)
                      ...|.++ +|+.+++..+ ++ .++...+.. .+|+.+.+.. .++...+.+|.        ++++|+.+++.+|+++..
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~--------~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFY--------YCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTT--------TCTTCCEEECTTSCCSEE
T ss_pred             HhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhh--------CcccCCeeecCCCcceEe
Confidence            3445554 6888888766 55 566666653 4788888875 56656666666        688888899888888866


Q ss_pred             CCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCcccc
Q 044724          394 IPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLL  473 (782)
Q Consensus       394 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  473 (782)
                      ...+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+++. +.++..-+      
T Consensus       196 ~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~------  264 (401)
T 4fdw_A          196 PASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS------  264 (401)
T ss_dssp             CTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT------
T ss_pred             chhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh------
Confidence            666666 578888888744 66667778888888999988875 56566777777 678888884 44553334      


Q ss_pred             chhhhcCCCCCCEEEcCCCcce-----eecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccc
Q 044724          474 SIEQINGLSGLSHLILAHNNLE-----GEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEIS  548 (782)
Q Consensus       474 ~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  548 (782)
                        ..|.+|++|+.+++.+|.+.     ...+.+|.+|++|+.+++.+ .++......|.+                    
T Consensus       265 --~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~--------------------  321 (401)
T 4fdw_A          265 --RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG--------------------  321 (401)
T ss_dssp             --TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT--------------------
T ss_pred             --hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC--------------------
Confidence              56788889999998887765     46677888999999999884 355333333332                    


Q ss_pred             ccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCcccc
Q 044724          549 FDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFS  628 (782)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  628 (782)
                                                       +++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|.
T Consensus       322 ---------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          322 ---------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             ---------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             ---------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence                                             457888888655 666667889999 999999999999877788888


Q ss_pred             CCC-CCCEEecCCCccc
Q 044724          629 KLE-AYRNLDLSYNKLN  644 (782)
Q Consensus       629 ~l~-~L~~LdLs~N~l~  644 (782)
                      +++ +++.|++..+.+.
T Consensus       367 ~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          367 GFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSCTTCCEEEECGGGHH
T ss_pred             CCCCCccEEEeCHHHHH
Confidence            884 7889998887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=1.1e-14  Score=137.90  Aligned_cols=110  Identities=24%  Similarity=0.290  Sum_probs=99.9

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      ..+.+++++|.++ .+|..+.  ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999998 4777664  789999999999999999999999999999999999998888888999999999999


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +|+|++..|..+..+.+++.+++.+||+.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999999888778889999999999999999985

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=2.9e-13  Score=146.98  Aligned_cols=330  Identities=13%  Similarity=0.099  Sum_probs=172.7

Q ss_pred             cccccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCCh
Q 044724           89 AYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDV  168 (782)
Q Consensus        89 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~  168 (782)
                      ..+|.++.+|+.+++..+ ++..      ...+|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .++.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREI------GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEE------CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCc------chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            355666667777766533 3321      1224666666666666543 44444556666666666665544 22 3444


Q ss_pred             hhhcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCC
Q 044724          169 KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQ  248 (782)
Q Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~  248 (782)
                      ..|.++..++.........  .. ..+|.++++|+.+.+..+..    .+....                  +..+++|+
T Consensus       134 ~aF~~~~~~~~~~~~~~~~--i~-~~aF~~c~~L~~i~l~~~~~----~I~~~~------------------F~~c~~L~  188 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGVTV--IG-DEAFATCESLEYVSLPDSME----TLHNGL------------------FSGCGKLK  188 (394)
T ss_dssp             TTTTTCCCSEEECCTTCCE--EC-TTTTTTCTTCCEEECCTTCC----EECTTT------------------TTTCTTCC
T ss_pred             eeeecccccccccCccccc--cc-hhhhcccCCCcEEecCCccc----eecccc------------------ccCCCCce
Confidence            4555554433333222221  11 34566666666666654211    111111                  33344444


Q ss_pred             eEEccCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 044724          249 VLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDV  328 (782)
Q Consensus       249 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L  328 (782)
                      .+++..+ ++ .+....+.++..|+.+.+..+.....                             .......+|+.+.+
T Consensus       189 ~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~-----------------------------~~~~~~~~l~~i~i  237 (394)
T 4fs7_A          189 SIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLG-----------------------------DFALSKTGVKNIII  237 (394)
T ss_dssp             BCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC-----------------------------TTTTTTCCCCEEEE
T ss_pred             EEEcCCC-ce-EeCchhhccccccceeecCCCceEee-----------------------------hhhcccCCCceEEE
Confidence            4444443 22 34455666777776665554432210                             01112234555555


Q ss_pred             cCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 044724          329 SNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLY  408 (782)
Q Consensus       329 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  408 (782)
                      ... ++ .+....+..+..++.+.+..+... .....|.        .+..++.+....+.+   ....|..+.+|+.+.
T Consensus       238 p~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~--------~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          238 PDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFY--------NCSGLKKVIYGSVIV---PEKTFYGCSSLTEVK  303 (394)
T ss_dssp             CTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTT--------TCTTCCEEEECSSEE---CTTTTTTCTTCCEEE
T ss_pred             CCC-ce-ecccccccccccceeEEcCCCcce-eeccccc--------cccccceeccCceee---ccccccccccccccc
Confidence            432 22 233333333566666666554322 2223333        456666666555432   223566677777777


Q ss_pred             CcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEE
Q 044724          409 LNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLI  488 (782)
Q Consensus       409 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~  488 (782)
                      +.++ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++..-.        ..|.+|++|+.++
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~  372 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA--------NAFQGCINLKKVE  372 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT--------TTBTTCTTCCEEE
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH--------HHhhCCCCCCEEE
Confidence            7644 44455566777777777777643 55556677777777777777665 443333        4567777788877


Q ss_pred             cCCCcceeecCccccCCCCCCEE
Q 044724          489 LAHNNLEGEVPVQLCGLNQLQLL  511 (782)
Q Consensus       489 L~~N~l~~~~~~~~~~l~~L~~L  511 (782)
                      +..+ ++ .+..+|.++++|+.+
T Consensus       373 lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          373 LPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             ECCC-CE-EhhheecCCCCCcEE
Confidence            7654 22 234567777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=2.1e-16  Score=154.11  Aligned_cols=162  Identities=20%  Similarity=0.295  Sum_probs=113.5

Q ss_pred             ccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcc
Q 044724          446 FCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPF  525 (782)
Q Consensus       446 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  525 (782)
                      +...+.++.++++.+.+++.+|.. ..+. ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l-~~l~-~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPI-EKMD-ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTC-CCCH-HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred             HHhcccccCcchheeEeccccCcH-hhhh-HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch
Confidence            344556666667777766665520 0000 256677888888888888875 55 7777888888888888887 34443


Q ss_pred             cccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCccccc
Q 044724          526 FYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGN  605 (782)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (782)
                      +..                                                     +++|+.|++++|++++ +| .++.
T Consensus        89 ~~~-----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           89 DAV-----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHH-----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             hhc-----------------------------------------------------CCcCCEEECcCCcCCc-CC-cccc
Confidence            321                                                     4578888888888886 44 5788


Q ss_pred             ccccceeecccccccccCC-ccccCCCCCCEEecCCCccccCCchh----------hhcCCCCcEEEcccCcCcc
Q 044724          606 LTRIQILNLSHNNLTGTIP-STFSKLEAYRNLDLSYNKLNGKIPRQ----------LVELNAFVVFSFACNNLSG  669 (782)
Q Consensus       606 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~~  669 (782)
                      +++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|++||  +|.++.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            8888888888888885433 46788888888888888888776653          77788888876  565553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.52  E-value=4.8e-13  Score=145.21  Aligned_cols=82  Identities=18%  Similarity=0.133  Sum_probs=38.7

Q ss_pred             ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecC
Q 044724          420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVP  499 (782)
Q Consensus       420 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  499 (782)
                      ..|.++..|+.+.+..+... .....|..+..++.+....+.+    +.       ..|..+.+|+.+.+.++ ++....
T Consensus       247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~-------~~F~~~~~L~~i~l~~~-i~~I~~  313 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PE-------KTFYGCSSLTEVKLLDS-VKFIGE  313 (394)
T ss_dssp             STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CT-------TTTTTCTTCCEEEECTT-CCEECT
T ss_pred             ccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cc-------ccccccccccccccccc-cceech
Confidence            34444555555555444322 3344455555555554444322    11       23445555555555443 333444


Q ss_pred             ccccCCCCCCEEEcc
Q 044724          500 VQLCGLNQLQLLDLS  514 (782)
Q Consensus       500 ~~~~~l~~L~~L~Ls  514 (782)
                      .+|.++++|+.+++.
T Consensus       314 ~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          314 EAFESCTSLVSIDLP  328 (394)
T ss_dssp             TTTTTCTTCCEECCC
T ss_pred             hhhcCCCCCCEEEeC
Confidence            555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=3.3e-14  Score=134.97  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=97.3

Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                      -+.+++++|.++ .+|..+.  ++|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367999999997 6777665  7899999999999999999999999999999999999987777789999999999999


Q ss_pred             CcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          665 NNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       665 N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      |+|++..+..+..+.+++.+++.+||+.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99998877768888999999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.8e-14  Score=136.08  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             hcccceeeccCCccCccCCcccccccccceeecccccccccCCc--cccCCCCCCEEecCCCccccCCchh----hhcCC
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS--TFSKLEAYRNLDLSYNKLNGKIPRQ----LVELN  655 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~  655 (782)
                      +++|+.|++++|.+++..|..++.+++|++|+|++|+++ .+|.  .++.+++|+.|++++|+++ .+|..    +..++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~  140 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP  140 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence            345666666666666544444566777777777777775 4444  6677777777777777776 34543    67777


Q ss_pred             CCcEEEcccCcCcc
Q 044724          656 AFVVFSFACNNLSG  669 (782)
Q Consensus       656 ~L~~L~ls~N~l~~  669 (782)
                      +|++||+++|....
T Consensus       141 ~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          141 QVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCSEETTEECCHHH
T ss_pred             ccceeCCCcCCHHH
Confidence            77777777776643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.2e-16  Score=151.31  Aligned_cols=154  Identities=21%  Similarity=0.225  Sum_probs=128.1

Q ss_pred             hhcCCCCCCEEEcCCCcceeecCc------cccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccc
Q 044724          477 QINGLSGLSHLILAHNNLEGEVPV------QLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFD  550 (782)
Q Consensus       477 ~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (782)
                      .+.....++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+..                      
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------   68 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------   68 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------
Confidence            455677888899999999888877      89999999999999999987 55 3332                      


Q ss_pred             ccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCC
Q 044724          551 FRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKL  630 (782)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  630 (782)
                                                     +++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .++.+
T Consensus        69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence                                           668999999999999 678888889999999999999996 45 68999


Q ss_pred             CCCCEEecCCCccccCCc-hhhhcCCCCcEEEcccCcCcccCCCC----------ccccCCCCcccccCCC
Q 044724          631 EAYRNLDLSYNKLNGKIP-RQLVELNAFVVFSFACNNLSGKIPEL----------TAQFATFNESSYKGNP  690 (782)
Q Consensus       631 ~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~~~~p~~----------~~~~~~l~~~~~~gNp  690 (782)
                      ++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..++.++.++  |||
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~  183 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP  183 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence            999999999999996433 57899999999999999999887762          34556666544  554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.4e-13  Score=130.14  Aligned_cols=91  Identities=21%  Similarity=0.211  Sum_probs=85.0

Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ++++.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            36889999999999999999999999999999999999888888999999999999999999887778999999999999


Q ss_pred             ccCcCcccCCC
Q 044724          663 ACNNLSGKIPE  673 (782)
Q Consensus       663 s~N~l~~~~p~  673 (782)
                      ++|++++..+.
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            99999987664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.6e-13  Score=129.31  Aligned_cols=131  Identities=19%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL  398 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  398 (782)
                      .+++|+.|++++|+++ .+|. +....++|+.|++++|.+++.  ..+.        .+++|++|++++|.+++..+..+
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~--------~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFP--------LLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCC--------CCSSCCEEECCSSCCCEECSCHH
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccc--------cCCCCCEEECCCCcccccCcchh
Confidence            4567777777777777 4543 433244777777777776654  2333        56666666666666665443444


Q ss_pred             cCCCCCcEEECcCCcccccCCc--cccCcCCCCEEeCCCCccccCCCh----hccCCCCCceEeccCCcce
Q 044724          399 SKCFLLKGLYLNNNNLSGKIPQ--WLGNLTGLQHIIMPKNHLEGPIPV----EFCQLDWLQILDISDNNIS  463 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~  463 (782)
                      ..+++|++|++++|+++ .+|.  .+..+++|++|++++|.++. +|.    .+..+++|+.||+++|...
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            56666666666666664 3333  45555666666666665553 233    2555555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=4.1e-13  Score=127.43  Aligned_cols=91  Identities=21%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             cccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          583 SLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ++|+.|+|++|++++..|..|+++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            36899999999999999999999999999999999999887778899999999999999999777777999999999999


Q ss_pred             ccCcCcccCCC
Q 044724          663 ACNNLSGKIPE  673 (782)
Q Consensus       663 s~N~l~~~~p~  673 (782)
                      ++|++....+.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999876554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=6.6e-13  Score=141.60  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=97.0

Q ss_pred             ceeeccCC-ccCccCCcccccccccceeeccc-ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          586 SGIDLSCN-KLIGHIPPPIGNLTRIQILNLSH-NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       586 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789998 888 4788 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +|+|++..|..+..+. ++.+++.+|++.|+|.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999988777555554 8999999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=6e-11  Score=128.61  Aligned_cols=128  Identities=10%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      ++..|+.+.+.++.. .....+|.++.+|+.+.+. +.+.......|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+
T Consensus       263 ~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            566666666654433 2445566777777777775 3454455566777777777777654 555566677777778777


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcC
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNL  518 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  518 (782)
                      .+..+ ++ .++.       ..|.+|++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       340 ~ip~s-v~-~I~~-------~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          340 AIPSS-VT-KIPE-------SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTT-CC-BCCG-------GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EECcc-cC-EEhH-------hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            77544 43 2332       567777888888887776431   3566677788777766654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=2.9e-10  Score=123.26  Aligned_cols=86  Identities=12%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             ccccCCC-CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc---CcCcCChhhhcCCCCCCEEEcccCCCCCccCCCC
Q 044724          120 REVTRLN-NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR---LEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQG  195 (782)
Q Consensus       120 ~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (782)
                      .+|.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..|.   ++ .|+..+|..+.+|+.+.+..+ ++... ..+
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~-~~a  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID-SEA  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC-TTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh-hhh
Confidence            4577774 5888888754 676677888888888888887764   55 666667888888887776654 33332 466


Q ss_pred             CCCCCCccEEeccc
Q 044724          196 FPHFKSLEHLDMSY  209 (782)
Q Consensus       196 l~~l~~L~~L~L~~  209 (782)
                      |..+.+|+.+.+..
T Consensus       133 F~~c~~L~~i~lp~  146 (394)
T 4gt6_A          133 FHHCEELDTVTIPE  146 (394)
T ss_dssp             TTTCTTCCEEECCT
T ss_pred             hhhhcccccccccc
Confidence            77777777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=9e-14  Score=148.84  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             cccccccceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchhhh
Q 044724          603 IGNLTRIQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQLV  652 (782)
Q Consensus       603 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~  652 (782)
                      +...++|++|+|++|.|+..    ++..+...++|++|||++|.|+......+.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            34444555555555555432    223333445556666666655544333333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=6.3e-12  Score=133.97  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             hcccceeeccC-CccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEE
Q 044724          582 LSLLSGIDLSC-NKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF  660 (782)
Q Consensus       582 l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  660 (782)
                      +++|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            45799999996 999998889999999999999999999999999999999999999999999987777777776 9999


Q ss_pred             EcccCcCcccCCC-CccccCCCCcccccCCCCCCCC
Q 044724          661 SFACNNLSGKIPE-LTAQFATFNESSYKGNPFLCGL  695 (782)
Q Consensus       661 ~ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~lC~~  695 (782)
                      ++++|++....+- .+..+.......+..+...|..
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~  144 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG  144 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence            9999999864321 1122222233344556667754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=2.4e-13  Score=145.47  Aligned_cols=171  Identities=20%  Similarity=0.161  Sum_probs=94.9

Q ss_pred             CCCcEEEccCCcCCccCChhhhhc----CCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCc
Q 044724          321 KSLRLLDVSNNNFQGCIPVEIGDI----LPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQ  396 (782)
Q Consensus       321 ~~L~~L~Ls~n~l~~~ip~~~~~~----l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~  396 (782)
                      +.|+.|++++|.++......+...    .++|++|+|++|.++......+..       .+++|++|+|++|.++.....
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-------VFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-------HHHTEEEEECCSSCCCHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-------HHHhccHhhcCCCCCCHHHHH
Confidence            456677777776664333333221    146677777777665432222221       244566777777766543332


Q ss_pred             cc-----cCCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccccCC----ChhccCCCCCceEeccCCcce
Q 044724          397 SL-----SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGPI----PVEFCQLDWLQILDISDNNIS  463 (782)
Q Consensus       397 ~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~  463 (782)
                      .+     ...++|++|+|++|.++..    ++..+..+++|++|+|++|.++...    +..+...++|++|+|++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            22     2345677777777776542    3334455667777777777766432    444556667777777777776


Q ss_pred             eeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccc
Q 044724          464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQL  502 (782)
Q Consensus       464 ~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  502 (782)
                      +.....+.    ..+...++|++|+|++|.++......+
T Consensus       225 ~~g~~~l~----~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          225 DTAALALA----RAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHH----HHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHH----HHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            43221111    234456677777777777765443333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.06  E-value=1.9e-08  Score=108.23  Aligned_cols=118  Identities=13%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             CCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceE
Q 044724          376 NLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL  455 (782)
Q Consensus       376 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  455 (782)
                      ++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            4555666655543 34344445555666666665432 333334455556666666665555555555555566666666


Q ss_pred             eccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCC
Q 044724          456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGL  505 (782)
Q Consensus       456 ~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  505 (782)
                      ++..+ ++..-.        ..|.+|++|+.+.+..+ ++.....+|.++
T Consensus       316 ~lp~~-l~~I~~--------~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          316 TLPTA-LKTIQV--------YAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             ECCTT-CCEECT--------TTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             EcCcc-ccEEHH--------HHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            55433 332212        34455555555555433 333344445444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.93  E-value=9.2e-08  Score=102.89  Aligned_cols=129  Identities=14%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             CCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccc
Q 044724          319 SHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSL  398 (782)
Q Consensus       319 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  398 (782)
                      .+.+|+.+.+..+ +. .++...+..+..|+.+.+..+ ++......|.        ++.+|+.+.+..+ ++.....+|
T Consensus       215 ~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~--------~~~~l~~i~l~~~-i~~i~~~aF  282 (379)
T 4h09_A          215 YGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ--------NCTALKTLNFYAK-VKTVPYLLC  282 (379)
T ss_dssp             TCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTT--------TCTTCCEEEECCC-CSEECTTTT
T ss_pred             cccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccc--------eeehhcccccccc-ceecccccc
Confidence            3445555555433 22 233333333556666666543 3333333333        4666666666443 443444566


Q ss_pred             cCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCC
Q 044724          399 SKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDN  460 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  460 (782)
                      .++.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            66777777777666666555566777777777777543 55455666777777777776544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=1.7e-09  Score=114.59  Aligned_cols=83  Identities=13%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             hcccceeeccCCccCccCCcccc---cccccceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchhhhc-
Q 044724          582 LSLLSGIDLSCNKLIGHIPPPIG---NLTRIQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVE-  653 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-  653 (782)
                      +++|+.|+|++|.+....+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34566666666665533222221   355666666666666542    2333344566666666666665433333333 


Q ss_pred             CCCCcEEEcccCc
Q 044724          654 LNAFVVFSFACNN  666 (782)
Q Consensus       654 l~~L~~L~ls~N~  666 (782)
                      +  ...++++.|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  2445665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=1.8e-09  Score=114.36  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=91.7

Q ss_pred             ccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhh--cCCCCCCEEEcCC--Ccce
Q 044724          420 QWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQI--NGLSGLSHLILAH--NNLE  495 (782)
Q Consensus       420 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~--~~l~~L~~L~L~~--N~l~  495 (782)
                      ..+..+++|+.|++++|.-. .++. + .+++|+.|++..|.++....        ..+  ..+++|+.|+|+.  |...
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l--------~~l~~~~lp~L~~L~L~~~~~~~~  234 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV--------EDILGSDLPNLEKLVLYVGVEDYG  234 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH--------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH--------HHHHHccCCCCcEEEEeccccccc
Confidence            34455566666666655211 1222 2 25667777776666543211        122  2567777777642  2211


Q ss_pred             ee-----cCccc--cCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEE
Q 044724          496 GE-----VPVQL--CGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEF  568 (782)
Q Consensus       496 ~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (782)
                      +.     +...+  ..+++|++|+|.+|.+.+..+..+...                                       
T Consensus       235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---------------------------------------  275 (362)
T 2ra8_A          235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES---------------------------------------  275 (362)
T ss_dssp             CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------------------------------------
T ss_pred             cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------------------------------------
Confidence            11     11122  247888899888888764332222110                                       


Q ss_pred             EecCCeeeecchhhcccceeeccCCccCcc----CCcccccccccceeecccccccccCCccccC-CCCCCEEecCCCc
Q 044724          569 TTKSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIGNLTRIQILNLSHNNLTGTIPSTFSK-LEAYRNLDLSYNK  642 (782)
Q Consensus       569 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~LdLs~N~  642 (782)
                                 ..+++|+.|||+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+|++.|+
T Consensus       276 -----------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          276 -----------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             -----------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             -----------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                       0156788999999988763    3445567788999999999887543333332 2  3568888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=4.7e-10  Score=112.53  Aligned_cols=109  Identities=22%  Similarity=0.213  Sum_probs=64.4

Q ss_pred             ccCCCCCcE--EeCCCCCCC---CcchhhcCCCCCCCEEEccCCcCcC--cCChhhhcCCCCCCEEEcccCCCCCccCCC
Q 044724          122 VTRLNNLKM--FDLSGNSFN---NSILSSLTRLSSVRSLKLSYNRLEG--SIDVKEFDSFNNLEVLDMKRNEIDNLVVPQ  194 (782)
Q Consensus       122 l~~l~~L~~--L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~  194 (782)
                      |...+.|+.  ++++.|...   ..++....++++|++|+|++|.+++  .+|. .+..+++|++|+|++|++++.....
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhh
Confidence            333444554  566666432   1112222457788888888888774  3333 5567788888888888887752123


Q ss_pred             CCCCCCCccEEecccCcccccccch-------HHHhhcCCCCCeEeCC
Q 044724          195 GFPHFKSLEHLDMSYAHIALNTNFL-------QIIGESMPSLKHLSLS  235 (782)
Q Consensus       195 ~l~~l~~L~~L~L~~n~~~~~~~~~-------~~l~~~l~~L~~L~L~  235 (782)
                      .+..+ +|++|+|++  |.+.+.+|       ..+.. +++|+.||=.
T Consensus       216 ~l~~l-~L~~L~L~~--Npl~~~~~~~~~y~~~il~~-~P~L~~LDg~  259 (267)
T 3rw6_A          216 KIKGL-KLEELWLDG--NSLCDTFRDQSTYISAIRER-FPKLLRLDGH  259 (267)
T ss_dssp             GGTTS-CCSEEECTT--STTGGGCSSHHHHHHHHHHH-CTTCCEESSC
T ss_pred             hcccC-CcceEEccC--CcCccccCcchhHHHHHHHH-CcccCeECCc
Confidence            33444 788888888  44554333       23444 8888888643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=2.8e-07  Score=92.38  Aligned_cols=65  Identities=26%  Similarity=0.342  Sum_probs=28.4

Q ss_pred             ccccceeecccccccc--cCCccccCCCCCCEEecCCCccccCCchhhhcCC--CCcEEEcccCcCcccCC
Q 044724          606 LTRIQILNLSHNNLTG--TIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELN--AFVVFSFACNNLSGKIP  672 (782)
Q Consensus       606 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~~~~p  672 (782)
                      +++|+.|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  .|+.|+|++|.+++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3444444444444444  2233344444444444444444432  1222222  44445555555444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=7.2e-08  Score=91.99  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=47.5

Q ss_pred             cCcCCCCEEeCCCCccccC----CChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc--CCCccee
Q 044724          423 GNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL--AHNNLEG  496 (782)
Q Consensus       423 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L--~~N~l~~  496 (782)
                      ...++|++|+|++|.+...    +...+...++|++|+|++|.++..--..+.    ..+...++|++|+|  ++|.+..
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~----~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV----EALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH----HGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH----HHHHhCCCceEEEecCCCCCCCH
Confidence            3344555555555554422    122333445566666666665532111010    33455566777777  6666653


Q ss_pred             e----cCccccCCCCCCEEEccCCcCC
Q 044724          497 E----VPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       497 ~----~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      .    +...+...++|++|+|++|.+.
T Consensus       138 ~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          138 NVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3    2233445567777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=9.2e-08  Score=91.23  Aligned_cols=93  Identities=10%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             cCCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccccC----CChhccCCCCCceEec--cCCcceeeCCC
Q 044724          399 SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGP----IPVEFCQLDWLQILDI--SDNNISGSLPS  468 (782)
Q Consensus       399 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~p~  468 (782)
                      ...++|++|+|++|.+...    +...+...++|++|+|++|.|+..    +...+...++|++|+|  ++|.++.....
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3344455555555555432    122233345555555555555432    2334445556666666  55665532211


Q ss_pred             CccccchhhhcCCCCCCEEEcCCCcce
Q 044724          469 CFHLLSIEQINGLSGLSHLILAHNNLE  495 (782)
Q Consensus       469 ~~~~~~~~~~~~l~~L~~L~L~~N~l~  495 (782)
                      .+.    ..+...++|++|+|++|.+.
T Consensus       142 ~l~----~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIA----NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHH----HHHHHCSSCCEEECCCSSHH
T ss_pred             HHH----HHHHhCCCcCEEeccCCCCC
Confidence            111    33444566677777666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=4.3e-06  Score=77.54  Aligned_cols=82  Identities=12%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCc-CcCcCChhhhcCC----CCCCEEEcccCC-CCCccCCCCCCCCC
Q 044724          127 NLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNR-LEGSIDVKEFDSF----NNLEVLDMKRNE-IDNLVVPQGFPHFK  200 (782)
Q Consensus       127 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~~l~  200 (782)
                      +|++|||+++.++......+.++++|++|+|++|. +++. ....+..+    ++|++|+|++|. ++... -..+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence            46666666666665555556666777777777664 3311 11123333    357777777764 55443 23455677


Q ss_pred             CccEEecccC
Q 044724          201 SLEHLDMSYA  210 (782)
Q Consensus       201 ~L~~L~L~~n  210 (782)
                      +|++|+++++
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            7777777773

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=1.3e-05  Score=74.25  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=16.9

Q ss_pred             CCCEEEcCCCc-ceeecCccccCCCCCCEEEccCCc
Q 044724          483 GLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       483 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      +|++|+|++|. ++...-..+..+++|++|++++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            45555555543 443323334455555566555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.59  E-value=5.4e-05  Score=66.95  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             CcEEEcccCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          657 FVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       657 L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      |++|+|++|+|+...+..+..+..++.+++.+|||.|+|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4444444444444444444444455555666777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00021  Score=67.50  Aligned_cols=16  Identities=13%  Similarity=0.009  Sum_probs=8.5

Q ss_pred             ccCCCCCCEEEccCCc
Q 044724          502 LCGLNQLQLLDLSDNN  517 (782)
Q Consensus       502 ~~~l~~L~~L~Ls~N~  517 (782)
                      +..-+.|+.|+++.|.
T Consensus       153 L~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          153 IEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHCSSCCEEECCCCC
T ss_pred             HHhCCCcCeEeccCCC
Confidence            3444556666665544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00086  Score=63.30  Aligned_cols=69  Identities=13%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             cCCCCCCEEeCCCC-CCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc----chhhcCCCCCCCEEEccCCcCc
Q 044724           93 TPFQQLESLSLSAN-NIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS----ILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        93 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      ..-+.|++|+|++| +|...--  ....+++..-+.|++|+|++|.+.+.    +.+.+..-+.|++|+|++|.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            44556666666654 4431100  00011244445566666666665532    2223334455566666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.002  Score=56.69  Aligned_cols=56  Identities=27%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             eeeccCCccC-ccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccc
Q 044724          587 GIDLSCNKLI-GHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN  644 (782)
Q Consensus       587 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  644 (782)
                      .+|.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4666666665 24444332  24556666666666555555555556666666555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	782
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 6e-16
 Identities = 61/392 (15%), Positives = 128/392 (32%), Gaps = 51/392 (13%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
           L+ +           +  +  +  L+++  +  S N+L             NL  L    
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDIL 94

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSW 244
              + +       +  +L  L +    I        +   +   L   ++S+ S  +   
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
           +L Q+ + +      P++         +      +  + A++T   SL A   Q+  ++ 
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT- 213

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPS 364
                      P+    +L  L ++ N  +    +     L +L+  +++ N +    P 
Sbjct: 214 -----------PLGILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAPL 259

Query: 365 SFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGN 424
           S           LT +  L L  N      P +         L  N           + N
Sbjct: 260 S----------GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE----DISPISN 305

Query: 425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484
           L  L ++ +  N++    P     L  LQ L  ++N +S           +  +  L+ +
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD----------VSSLANLTNI 353

Query: 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN 516
           + L   HN +    P  L  L ++  L L+D 
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 9e-16
 Identities = 57/332 (17%), Positives = 105/332 (31%), Gaps = 33/332 (9%)

Query: 321 KSLRLLDVSNNNFQGCIPVE----IGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
            +L  ++ SNN      P++    + DIL + +         + +  +            
Sbjct: 66  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN 436
                   L            +S    L  L   +        + L NLT L+ + +  N
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 437 HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
                      +L  L+ L  ++N IS   P              + L  L L  N L+ 
Sbjct: 186 K--VSDISVLAKLTNLESLIATNNQISDITPLGIL----------TNLDELSLNGNQLKD 233

Query: 497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEK 556
                L  L  L  LDL++N +  L P            +  + L +    +    N   
Sbjct: 234 --IGTLASLTNLTDLDLANNQISNLAP-----------LSGLTKLTELKLGANQISNISP 280

Query: 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH 616
                +    E              L  L+ + L  N +      P+ +LT++Q L  ++
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFAN 338

Query: 617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648
           N ++    S+ + L     L   +N+++   P
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 7e-10
 Identities = 64/402 (15%), Positives = 111/402 (27%), Gaps = 61/402 (15%)

Query: 221 IIGESMPSLKHLSLSNFSPSN----DSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFH 276
           +    +  +  L        +    +       +  SNN         PL N ++L    
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDIL 94

Query: 277 AYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGC 336
             NN+I      ++        L +  ++                S   +   +      
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 337 IPVEIGDILPSLSCFNISMNALDGSIPSSF-EGHMFSKNFNLTNVRWLLLEENHFVGEIP 395
              ++           ++       +  S  +    S    LTN+  L+   N      P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 396 QSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQIL 455
             +     L  L LN N L       L +LT L  + +  N +    P     L  L  L
Sbjct: 215 LGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 268

Query: 456 DISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 515
            +  N IS   P                 +   L  N  + E    +  L  L  L L  
Sbjct: 269 KLGANQISNISPLAGLT------------ALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 516 NNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAY 575
           NN+   I P    T L   +  N+ +     ++                           
Sbjct: 317 NNISD-ISPVSSLTKLQRLFFANNKVSDVSSLAN-------------------------- 349

Query: 576 TYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN 617
                 L+ ++ +    N++      P+ NLTRI  L L+  
Sbjct: 350 ------LTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 85  WYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILS 144
              +    +  + L  L+L  NNI+            V+ L  L+    + N    S +S
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFANNKV--SDVS 345

Query: 145 SLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
           SL  L+++  L   +N++          +   +  L +   
Sbjct: 346 SLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 63/300 (21%), Positives = 106/300 (35%), Gaps = 42/300 (14%)

Query: 404 LKGLYLNNNNLSGK--IPQWLGNLTGLQHIIMPKNH-LEGPIPVEFCQLDWLQILDISDN 460
           +  L L+  NL     IP  L NL  L  + +   + L GPIP    +L  L  L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHG 520
                          + ++ +  L  L  ++N L G +P  +  L  L  +    N + G
Sbjct: 112 --------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 521 LIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR 580
            IP  + + +   +    S      +I   F N        S  + E        + +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 581 VLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY 640
                          +      +G    +  L+L +N + GT+P   ++L+   +L++S+
Sbjct: 224 QK------IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 641 NKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPLPIC 700
           N L G+IP+                               F+ S+Y  N  LCG PLP C
Sbjct: 278 NNLCGEIPQ-------------------------GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 64/385 (16%), Positives = 106/385 (27%), Gaps = 78/385 (20%)

Query: 20  CLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCCQ--WANVECNNTTGRVIQLYLSNT 77
           C   ++ ALLQ+K    +P   L  W+     TDCC   W  V C+  T           
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPT---TDCCNRTWLGVLCDTDTQTY-------- 50

Query: 78  RSMELEEWYLNAYLFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGN- 136
                              ++ +L LS  N+             +  L  L    + G  
Sbjct: 51  -------------------RVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGIN 87

Query: 137 SFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGF 196
           +    I  ++ +L+ +  L +++             +  +          +D        
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTN--------VSGAIPDFLSQIKTLVTLDFSYNALSG 139

Query: 197 PHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNH 256
               S+  L                I +S  S   L  S     N         + + N 
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 257 FRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP 316
             + +S + L   + +      N +       S +                         
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--------------------FDLGK 239

Query: 317 IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFN 376
           +   K+L  LD+ NN   G +P  +   L  L   N+S N L G IP            N
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG---------GN 289

Query: 377 LTNVRWLLLEENHFVGEIPQSLSKC 401
           L          N  +   P  L  C
Sbjct: 290 LQRFDVSAYANNKCLCGSP--LPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 46/274 (16%), Positives = 90/274 (32%), Gaps = 26/274 (9%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
            +   L L+ N               L  L L NN +S   P     L  L+ + + KN 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 438 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE 497
           L+            LQ L + +N I+    S F+ L+         +  L        G 
Sbjct: 91  LKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMI------VVELGTNPLKSSGI 141

Query: 498 VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTEK 556
                 G+ +L  + ++D N+  +      + T LH   N  + +D       +      
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 557 KVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH 616
                   +   +  +  +  +  +           N  +  +P  + +   IQ++ L +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHL----------NNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 617 NNLTGTIPSTF------SKLEAYRNLDLSYNKLN 644
           NN++    + F      +K  +Y  + L  N + 
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 17/216 (7%)

Query: 452 LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLL 511
             +LD+ +N I+      F          L  L  LIL +N +    P     L +L+ L
Sbjct: 33  TALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 512 DLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTK 571
            LS N L  L             + N   + K  +  F+  N    VE  ++ +     +
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 572 SNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLE 631
           + A+      +  LS I ++   +      P G    +  L+L  N +T    ++   L 
Sbjct: 143 NGAFQG----MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 632 AYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNL 667
               L LS+N ++      L             N L
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 20/266 (7%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKL 157
              L L  N I            +   L NL    L  N  +     +   L  +  L L
Sbjct: 33  TALLDLQNNKI------TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 158 SYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTN 217
           S N+L+  +  K   +   L V + +  ++   V    F     +  +++    +  +  
Sbjct: 87  SKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV----FNGLNQMIVVELGTNPLKSSGI 141

Query: 218 FLQIIGESMPSLKHLSLSNFSPSNDSWTLN---QVLWLSNNHFRIPISPDPLFNHSRLKI 274
                   M  L ++ +++ + +     L      L L  N          L   + L  
Sbjct: 142 ENGAFQ-GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD-AASLKGLNNLAK 199

Query: 275 FHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQ 334
                N I A    S + T    +       +          +  HK ++++ + NNN  
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRE----LHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 335 GCIPVEIGDILPSLSCFNISMNALDG 360
                +      +    + S  +L  
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 25/84 (29%)

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
           P        +L+L +N +T      F  L+    L L  NK++   P     L       
Sbjct: 26  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 662 FACNNLSGKIPELTAQFATFNESS 685
            + N L     ++           
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 7e-10
 Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNH 437
              + + L  N        S   C  L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 438 LEGPI-PVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
               + P  F  L  L  L +               L      GL+ L +L L  N L+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC--------GLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 497 EVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYN-TALHESYNNNSSLDKPFEISFDFRNTE 555
                   L  L  L L  N +  +    F    +L     + + +      +F      
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLS 615
             +   ++ +    T++ A     + L L +     C+               +Q    S
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRL-NDNPWVCD------CRARPLWAWLQKFRGS 256

Query: 616 HNNLTGTIPSTFSKLEAYRNLDLSYNKLNG 645
            + +  ++P   +  +      L+ N L G
Sbjct: 257 SSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 9/170 (5%)

Query: 369 HMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGL 428
                   L  +++L L++N        +      L  L+L+ N +S    +    L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 429 QHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLI 488
             +++ +N +    P  F  L  L  L +  N            L  E +  L  L +L 
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN--------NLSALPTEALAPLRALQYLR 231

Query: 489 LAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNN 538
           L  N    +   +      LQ    S + +   +P       L     N+
Sbjct: 232 LNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 36/216 (16%), Positives = 58/216 (26%), Gaps = 4/216 (1%)

Query: 482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSL 541
           +    + L  N +             L +L L  N L  +    F   AL E  + + + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 542 DKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPP 601
                    F    +                  +         L  + L  N L      
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----LQYLYLQDNALQALPDD 147

Query: 602 PIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFS 661
              +L  +  L L  N ++      F  L +   L L  N++    P    +L   +   
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 662 FACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697
              NNLS    E  A            NP++C    
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 33/246 (13%), Positives = 70/246 (28%), Gaps = 10/246 (4%)

Query: 126 NNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRN 185
              +   L GN  ++   +S     ++  L L  N L               ++      
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 186 EIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGES--MPSLKHLSLSNFSPSNDS 243
           ++ ++  P  F     L  L +    +      L     +     L+  +L         
Sbjct: 92  QLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 244 WTLN-QVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSL 302
              N   L+L  N     +          L     + N +      +        +L +L
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR---DLGRLMTL 206

Query: 303 SLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSI 362
            L +          +   ++L+ L +++N +          +   L  F  S + +  S+
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 363 PSSFEG 368
           P    G
Sbjct: 265 PQRLAG 270

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 52/344 (15%), Positives = 101/344 (29%), Gaps = 26/344 (7%)

Query: 314 RLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSK 373
           RL     +    L+++N          + ++ P L     S N+L   +P         +
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELP------Q 78

Query: 374 NFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIM 433
           +     V    L+    +  + + L              N S      + N      +  
Sbjct: 79  SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN----NSLKK 134

Query: 434 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNN 493
             +       +        ++ ++ +     ++ +  + L       LS  S +   +  
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 494 LEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRN 553
            E      L  L  +   +     L  L P             +   L +         N
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 554 TEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN 613
               + +    ++     SN       +   L  +++S NKLI  +P     L R   L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LI 310

Query: 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNG--KIPRQLVELN 655
            S N+L   +P     L   + L + YN L     IP  + +L 
Sbjct: 311 ASFNHLA-EVPELPQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 17/331 (5%)

Query: 150 SSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
                L+L+   L  S+     +   +LE L    N +  L  P+     KSL   + + 
Sbjct: 38  RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNL 90

Query: 210 AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
             ++     L+ +G S   L+ L     S       ++             +      N+
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVS 329
              ++    N      I   ++       L     S   G+              L  + 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 330 NNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR-WLLLEEN 388
            +N       ++   L +L+  +  +  L     S     +    F+  +     L   N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 389 HFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQ 448
               EI         L+ L ++NN L  ++P     L  L   I   NHL   +P     
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQN 325

Query: 449 LDWLQILDISDNNISGSLPSCFHLLSIEQIN 479
              L+ L +  N +    P     +   ++N
Sbjct: 326 ---LKQLHVEYNPLR-EFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 54/333 (16%), Positives = 109/333 (32%), Gaps = 23/333 (6%)

Query: 126 NNLKMFDLSGNSFNNSILSSLTR-LSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
                 +L+        LSSL      + SL  S N L   +     +   +L+ L +  
Sbjct: 38  RQAHELELNNLG-----LSSLPELPPHLESLVASCNSLT-ELP----ELPQSLKSLLVDN 87

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSW 244
           N +  L        +  + +  +       N++FL+II     SLK L     S    + 
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEI-TESHSLTAPTFQLKSLS 303
             NQ+  L        ++     N+S  K+     +                   L  L+
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 304 LSSGYGDGPFRLP--IHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGS 361
                 +    LP    S ++L + D    +            +       +S    +  
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 362 IPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQW 421
             ++    + S      ++  L +  N  + E+P    +   L+ L  + N+L+ ++P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL 322

Query: 422 LGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
             N   L+ + +  N L    P     ++ L++
Sbjct: 323 PQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 43/327 (13%), Positives = 84/327 (25%), Gaps = 30/327 (9%)

Query: 200 KSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-----FSPSNDSWTLNQVLWLSN 254
           +    L+++          L  + E  P L+ L  S            S     V   + 
Sbjct: 38  RQAHELELNN-------LGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 255 NHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFR 314
                          S  ++      +  + +           +L  L  S  +      
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 315 LPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKN 374
                 +   L  ++          ++ D+  SL       N L+          + +  
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 375 FNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP 434
            +   ++ L            +      L +           +       L+ L   +  
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS--GLSELPPNLYY 268

Query: 435 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
            N     I         L+ L++S+N +   LP+               L  LI + N+L
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL-----------PPRLERLIASFNHL 316

Query: 495 EGEVPVQLCGLNQLQLLDLSDNNLHGL 521
             EVP        L+ L +  N L   
Sbjct: 317 A-EVPEL---PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 130 MFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDN 189
                 N+ +N I S      S+  L +S N+L   +          LE L    N +  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLAE 318

Query: 190 LVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN 236
           +         ++L+ L + Y       N L+   +   S++ L +++
Sbjct: 319 V-----PELPQNLKQLHVEY-------NPLREFPDIPESVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 22/124 (17%)

Query: 129 KMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSID--------------------V 168
           ++  L+      ++L  L +L  V  L LS+NRL                         V
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 169 KEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPS 228
               +   L+ L +  N +      Q       L  L++    +       + + E +PS
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 229 LKHL 232
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 407 LYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 466
           L+L + +L+  +   L  L  + H+ +  N L    P     L  L++L           
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ---------- 49

Query: 467 PSCFHLLSIEQINGLSGLSHLILAHNNLEG-EVPVQLCGLNQLQLLDLSDNNLHGL 521
            S   L +++ +  L  L  L+L +N L+       L    +L LL+L  N+L   
Sbjct: 50  ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFS 238
           VL +      +L V         + HLD+S+  +      L  +          +     
Sbjct: 2   VLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 239 PSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQ 298
               +    Q L L NN  +   +  PL +  RL + +   N +  E      L      
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 299 LKSL 302
           + S+
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 35/136 (25%)

Query: 487 LILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFE 546
           L LAH +L   V   L  L  +  LDLS N L  L P       L     ++++L+    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 547 ISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIG-HIPPPIGN 605
           ++   R  E                                + L  N+L       P+ +
Sbjct: 61  VANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLVS 88

Query: 606 LTRIQILNLSHNNLTG 621
             R+ +LNL  N+L  
Sbjct: 89  CPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 21/223 (9%)

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
            L     I   K+++   +      LD +  L      ++          +IE +  L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT----------TIEGVQYLNN 64

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK 543
           L  L L  N +    P++         L  +       I        L  +    + +  
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHI---- 599
              +S          +  +       T     +     +S L+ +               
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 600 ---PPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
                P+ +L  +  ++L +N ++   P   +       + L+
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 22/230 (9%)

Query: 125 LNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKR 184
           L N        ++  +++  +   L  + +L      +     ++     NNL  L++K 
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 185 NEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSW 244
           N+I +L   +       LE       +++       I    + S +   ++  +  ++  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 245 TLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSL 304
            L   L    N   +    +  +                  +     LT        +S 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS-----IGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 305 SSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNIS 354
            S         P+ S  +L  + + NN      P+       +L    ++
Sbjct: 188 IS---------PLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLT 225

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 46/466 (9%), Positives = 108/466 (23%), Gaps = 40/466 (8%)

Query: 98  LESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN----SILSSLTRLSSVR 153
           ++SL +    +     ++   +  +  L   ++  L            I S+L    ++ 
Sbjct: 4   IQSLDIQCEEL-----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 154 SLKLSYNRLEGSIDVKEFDSF----NNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSY 209
            L L  N L                  ++ L ++   +            +    L    
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR---TLPTLQ 115

Query: 210 AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNH 269
                +        + +                 +              +   PD     
Sbjct: 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 175

Query: 270 SRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVS 329
                 +     +  +  +         +L+S  ++S        +         L   S
Sbjct: 176 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235

Query: 330 NNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENH 389
           N      +      +L   S          G                 +     L     
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 390 FVGEIPQSLSKCF----LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE 445
                             L+ L++ + + +        ++      ++        +   
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 446 FCQLDW---------LQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEG 496
             +            L++L ++D ++S S  S         +     L  L L++N L  
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL----AATLLANHSLRELDLSNNCLGD 411

Query: 497 EVPVQLCG-----LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN 537
              +QL          L+ L L D      +       AL +   +
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL--QALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 41/490 (8%), Positives = 108/490 (22%), Gaps = 54/490 (11%)

Query: 176 NLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLS 235
           +++ LD++  E+ +    +  P  +  + + +    +       + I  ++     L   
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPAL--- 57

Query: 236 NFSPSNDSWTLNQVLWLSNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAP 295
                         L L +N                        +     + +   L  P
Sbjct: 58  ------------AELNLRSNEL---------------------GDVGVHCVLQG--LQTP 82

Query: 296 TFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISM 355
           + +++ LSL +    G     + S           +     +      +L          
Sbjct: 83  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 142

Query: 356 NALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLS 415
                    S          ++   +    +                 +    L ++   
Sbjct: 143 LEKLQLEYCSLSAASCEPLASVLRAKP---DFKELTVSNNDINEAGVRVLCQGLKDSPCQ 199

Query: 416 GKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSI 475
            +  +         +       +     +    L   ++ D+    +   L      L  
Sbjct: 200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 259

Query: 476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESY 535
             I      +        +                L      L                 
Sbjct: 260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 319

Query: 536 NNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQG--RVLSLLSGIDLSCN 593
            + S                + + +                 QG  +  S+L  + L+  
Sbjct: 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 379

Query: 594 KL----IGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSK-----LEAYRNLDLSYNKLN 644
            +       +   +     ++ L+LS+N L         +           L L     +
Sbjct: 380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439

Query: 645 GKIPRQLVEL 654
            ++  +L  L
Sbjct: 440 EEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 44/407 (10%), Positives = 95/407 (23%), Gaps = 39/407 (9%)

Query: 151 SVRSLKLSYNRLEGSIDVKEFDSFNNLEVLDMKRNEIDNL---VVPQGFPHFKSLEHLDM 207
            ++SL +    L  +   +        +V+ +    +       +        +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 208 SYAHI--ALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPISPDP 265
               +        LQ +      ++ LSL N   +     +      +    +     D 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 266 LFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRL 325
           L   + L++      +    + +               L+S     P    +    +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 326 LDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLL 385
                   QG            L    ++ +                +    +N    + 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 386 EENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVE 445
                 G +  S     L            G + + L     L+ + +  N L       
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 446 FCQLDWLQILDISDNNISGSLPSCFHLLSI------------------------------ 475
            C+        +    +     +                                     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 476 EQINGLSGLSHLILAHNNLEGEVPVQLC----GLNQLQLLDLSDNNL 518
                 S L  L LA  ++       L       + L+ LDLS+N L
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 21/205 (10%)

Query: 315 LPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKN 374
           LP    K   +L +S N         +      L+  N+             E      +
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLD----------RAELTKLQVD 73

Query: 375 FNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP 434
             L  +  L L  N          +   L     ++ N L+      L  L  LQ + + 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 435 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNL 494
            N L+   P        L+ L +++NN++               NGL  L  L+L  N+L
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSL 184

Query: 495 EGEVPVQLCGLNQLQLLDLSDNNLH 519
              +P    G + L    L  N   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 36/216 (16%), Positives = 57/216 (26%), Gaps = 28/216 (12%)

Query: 445 EFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG 504
           E  ++     ++    N++ +LP                 + L L+ N L       L  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL----------PKDTTILHLSENLLYTFSLATLMP 53

Query: 505 LNQLQLLDLSDN------------NLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFR 552
             +L  L+L                L  L        +L        +L           
Sbjct: 54  YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 553 NTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS----LLSGIDLSCNKLIGHIPPPIGNLTR 608
           +      +   E+ E   K N        L      L  + L+ N L       +  L  
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 609 IQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
           +  L L  N+L  TIP  F          L  N   
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 13/178 (7%)

Query: 378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG-KIPQWLGNLTGLQHIIMPKN 436
            +   L L EN        +L     L  L L+   L+  ++   L  L  L        
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 437 HLEGPIPVEFCQ------------LDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGL 484
            L                      L    +  + +        +    L    +     L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 485 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLD 542
             L LA+NNL       L GL  L  L L +N+L+ +   FF +  L  ++ + +   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 42/275 (15%), Positives = 84/275 (30%), Gaps = 41/275 (14%)

Query: 403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI 462
           L + L L   NL   +   L +  G+     P++ ++ P+   F     +Q +D+S++ I
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVI 58

Query: 463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLI 522
             S            ++  S L +L L    L   +   L   + L  L+LS  +     
Sbjct: 59  EVSTLHGI-------LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 523 PPFFYNTALHESYNNN----------------------------SSLDKPFEISFDFRNT 554
                 ++       N                            S   K  + S      
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 555 EKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLS-CNKLIGHIPPPIGNLTRIQILN 613
            +       ++ +     N    +   L+ L  + LS C  +I      +G +  ++ L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIP 648
           +      GT+      L    +L ++ +       
Sbjct: 232 VFGIVPDGTLQLLKEAL---PHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 23/267 (8%)

Query: 100 SLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSY 159
           +L L+  N+   V     S         +  F    +  +  +    +    V+ + LS 
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-------QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSN 55

Query: 160 NRLEGSIDVKEFDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFL 219
           + +E S         + L+ L ++   + +  +        +L  L++S      +   L
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSG-FSEFAL 113

Query: 220 QIIGESMPSLKHLSLSNFSPSNDSWTLNQVL---------WLSNNHFRIPISPDPLFNHS 270
           Q +  S   L  L+LS      +      V           LS     +  S        
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 271 RLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLP-IHSHKSLRLLDVS 329
              + H   ++      +          L+ LSLS  Y   P  L  +    +L+ L V 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 330 NNNFQGCIPVEIGDILPSL--SCFNIS 354
                G +   + + LP L  +C + +
Sbjct: 234 GIVPDGTLQ-LLKEALPHLQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 11/221 (4%)

Query: 298 QLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNA 357
            + +      + D P      S   ++ +D+SN+  +      I      L   ++    
Sbjct: 24  GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 358 LDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK 417
           L   I ++            +N+  L L       E           +   LN +     
Sbjct: 83  LSDPIVNTL--------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134

Query: 418 IPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQ 477
             + +          + + +L G             +    +        S        Q
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 478 -INGLSGLSHLILAH-NNLEGEVPVQLCGLNQLQLLDLSDN 516
               L+ L HL L+   ++  E  ++L  +  L+ L +   
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 3/114 (2%)

Query: 585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPS-TFSKLEAYRNLDLSYNKL 643
            SG+  + +  +      +     +  L + +      +       L   RNL +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 644 NGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL 697
               P            + + N L   +   T Q  +  E    GNP  C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 29/216 (13%)

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
                    + K  +   +     +L+ +  +  ++++I           S++ I  L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK----------SVQGIQYLPN 69

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK 543
           ++ L L  N L          L  L+ L     + + +               +      
Sbjct: 70  VTKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI 603
                               ++      +N  T    +  L     LS          P+
Sbjct: 125 SDINGLVHL----------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL 174

Query: 604 GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLS 639
             LT++Q L LS N+++       + L+    L+L 
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 393 EIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWL 452
           ++   +SK +      L+   L  +    L        +    +     + +    +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLD 512
             L++S+N +         +           L  L L+ N L+ E  +      +L+ L 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIV------QKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 513 LSDNNLHGLIP-PFFYNTALHESYNNNSSLD 542
           L  N+L         Y +A+ E +     LD
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 29/213 (13%)

Query: 424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSG 483
            L      ++ K ++   +      LD +  L      I           SI+ +  L+ 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK----------SIDGVEYLNN 63

Query: 484 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK 543
           L+ +  ++N L    P++        L++ +       +      T L    N  + +D 
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPI 603
              ++   R                 T      +    ++ L                P+
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL---------------KPL 168

Query: 604 GNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNL 636
            NLT ++ L++S N ++    S  +KL    +L
Sbjct: 169 ANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 31/248 (12%), Positives = 67/248 (27%), Gaps = 13/248 (5%)

Query: 395 PQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI 454
              +  C   +      + ++ +IP  L        +      L       F     L+ 
Sbjct: 2   HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 57

Query: 455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLS 514
           ++IS N++   + +       +           I   NNL    P     L  LQ L +S
Sbjct: 58  IEISQNDVLEVIEADVFSNLPKLHE------IRIEKANNLLYINPEAFQNLPNLQYLLIS 111

Query: 515 DNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNA 574
           +  +  L      ++      +   +++        F     +               N 
Sbjct: 112 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNC 171

Query: 575 YTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYR 634
                ++  L    + +  +L   +       +   IL++S   +          L+  R
Sbjct: 172 AFNGTQLDELNLSDNNNLEELPNDV---FHGASGPVILDISRTRIHSLPSYGLENLKKLR 228

Query: 635 NLDLSYNK 642
                  K
Sbjct: 229 ARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 43/352 (12%), Positives = 91/352 (25%), Gaps = 37/352 (10%)

Query: 153 RSLKLSYNRLEGSIDV-KEFDSFNNLEVLDMKRNEIDNL---VVPQGFPHFKSLEHLDMS 208
           +SLKL     E    V       ++++ + +  N I       + +     K LE  + S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 209 Y-------AHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIPI 261
                     I      L       P L  + LS+ +    +          +       
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 262 SPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHK 321
             +                E+       ++    +       L +G     +     SH+
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-SMKEWAKTFQSHR 186

Query: 322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVR 381
            L  + +  N  +      +     +       ++  D +        +     +  N+R
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 382 WLLLEENHFVGEIPQSLSKCFL------LKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPK 435
            L L +         ++   F       L+ L L  N +     + L  +          
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI--------- 297

Query: 436 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHL 487
                       ++  L  L+++ N  S        +  +    G   L  L
Sbjct: 298 ----------DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 339

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 601 PPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLN 644
               N  R + L+L    +   I +  + L+ +  +D S N++ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	782
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.9e-38  Score=332.88  Aligned_cols=278  Identities=25%  Similarity=0.415  Sum_probs=167.1

Q ss_pred             CCcHHHHHHHHHhHhcCCCCCCCcCCCCCCCCCCCCC--cccceEecCCC--CCEEEEEcCCCCCccccccccCcccccC
Q 044724           19 GCLDHERFALLQLKHFFNDPVNYLHDWVDAKGATDCC--QWANVECNNTT--GRVIQLYLSNTRSMELEEWYLNAYLFTP   94 (782)
Q Consensus        19 ~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C--~w~gv~C~~~~--~~V~~L~L~~~~~~~~~~~~~~~~~~~~   94 (782)
                      -|+++||+||++||+++.||. .+++|..   ++|||  .|.||+|+..+  +||++|||+++.+.  |...++ +.+.+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~--g~~~lp-~~l~~   74 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPIP-SSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEECC-GGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCC--CCCCCC-hHHhc
Confidence            599999999999999999875 6899975   67999  49999998643  48999999988763  221222 34566


Q ss_pred             CCCCCEEeCCC-CCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724           95 FQQLESLSLSA-NNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS  173 (782)
Q Consensus        95 l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~  173 (782)
                      +++|++|+|++ |+++|.+|.+      |+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|. .+.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~------i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~  147 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISS  147 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGG
T ss_pred             Cccccccccccccccccccccc------cccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhcc
Confidence            66666666664 5666666543      66666666666666666666666666666666666666666655554 5666


Q ss_pred             CCCCCEEEcccCCCCCccCCCCCCCCCCc-cEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEc
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSL-EHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWL  252 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L-~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~L  252 (782)
                      +++|+++++++|.+.+.. |..+..+.++ +.+++++  +.+.+..|..+.. +                   ....+++
T Consensus       148 l~~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~--n~l~~~~~~~~~~-l-------------------~~~~l~l  204 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISR--NRLTGKIPPTFAN-L-------------------NLAFVDL  204 (313)
T ss_dssp             CTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCS--SEEEEECCGGGGG-C-------------------CCSEEEC
T ss_pred             Ccccceeecccccccccc-cccccccccccccccccc--ccccccccccccc-c-------------------ccccccc
Confidence            666666666666666543 5555555444 5555555  4444444444333 1                   1223444


Q ss_pred             cCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCc
Q 044724          253 SNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNN  332 (782)
Q Consensus       253 s~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~  332 (782)
                      +.+...+.++. .+..+++++.+++.+|.+.+.++                            .+..+++|+.|++++|+
T Consensus       205 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~~l~~~~~----------------------------~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         205 SRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLG----------------------------KVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGG----------------------------GCCCCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccccccccccccccccccccccc----------------------------ccccccccccccCccCe
Confidence            55555544432 23444444444444444332211                            12233455555555555


Q ss_pred             CCccCChhhhhcCCCCcEEEcccCcCcccCC
Q 044724          333 FQGCIPVEIGDILPSLSCFNISMNALDGSIP  363 (782)
Q Consensus       333 l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p  363 (782)
                      ++|.+|..++. +++|++|+|++|+++|.+|
T Consensus       256 l~g~iP~~l~~-L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         256 IYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             CEECCCGGGGG-CTTCCEEECCSSEEEEECC
T ss_pred             ecccCChHHhC-CCCCCEEECcCCcccccCC
Confidence            55555555544 4555555555555555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.5e-34  Score=298.62  Aligned_cols=260  Identities=33%  Similarity=0.512  Sum_probs=228.6

Q ss_pred             CCCCEEEccCccccc--cCCccccCCCCCcEEECcC-CcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCce
Q 044724          378 TNVRWLLLEENHFVG--EIPQSLSKCFLLKGLYLNN-NNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQI  454 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  454 (782)
                      .+++.|+|++|.++|  .+|..++++++|++|+|++ |.++|.+|..|+++++|++|++++|++.+..+..+..++.|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357778888887776  4678888888888888876 7888888888888888999999888888888888888888999


Q ss_pred             EeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCC-CEEEccCCcCCCcCCcccccccccc
Q 044724          455 LDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQL-QLLDLSDNNLHGLIPPFFYNTALHE  533 (782)
Q Consensus       455 L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~  533 (782)
                      +++++|++.+.+|        ..++.++.++++++++|.+++.+|..+..+..+ +.+++++|++++..|..+...    
T Consensus       130 l~l~~N~~~~~~p--------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l----  197 (313)
T d1ogqa_         130 LDFSYNALSGTLP--------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----  197 (313)
T ss_dssp             EECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----
T ss_pred             cccccccccccCc--------hhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc----
Confidence            9999998888888        567888899999999999998888888888776 889999999998888766542    


Q ss_pred             cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceee
Q 044724          534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILN  613 (782)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  613 (782)
                                                                        ....++++++...+.+|..++.+++++.++
T Consensus       198 --------------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         198 --------------------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             --------------------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             --------------------------------------------------cccccccccccccccccccccccccccccc
Confidence                                                              234689999999999999999999999999


Q ss_pred             cccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCCCC
Q 044724          614 LSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPFLC  693 (782)
Q Consensus       614 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC  693 (782)
                      +++|.+++.+| .++.+++|+.|||++|+++|.+|+.|+++++|++|+|++|+|+|.+|+ ++.+++++.+++.||+.+|
T Consensus       228 ~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             ccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            99999998766 688999999999999999999999999999999999999999999998 7889999999999999999


Q ss_pred             CCCCCCCC
Q 044724          694 GLPLPICR  701 (782)
Q Consensus       694 ~~~l~~C~  701 (782)
                      |.|++.|.
T Consensus       306 g~plp~c~  313 (313)
T d1ogqa_         306 GSPLPACT  313 (313)
T ss_dssp             STTSSCCC
T ss_pred             CCCCCCCC
Confidence            99988783

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8.6e-27  Score=251.02  Aligned_cols=341  Identities=20%  Similarity=0.236  Sum_probs=231.6

Q ss_pred             CCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcC
Q 044724           94 PFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDS  173 (782)
Q Consensus        94 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~  173 (782)
                      .+.+|++|+++++.|+.. +.       +..+++|++|+|++|++++..  .++++++|++|++++|.+. .++  .+++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~g-------l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~--~l~~  108 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DG-------VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT--PLAN  108 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TT-------GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG--GGTT
T ss_pred             HhCCCCEEECCCCCCCCc-cc-------cccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-ccc--cccc
Confidence            456788888888888643 21       777888888888888888643  3888888888888888887 455  4788


Q ss_pred             CCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCC-CCCCCCCCCCCCeEEc
Q 044724          174 FNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSN-FSPSNDSWTLNQVLWL  252 (782)
Q Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~-~ip~~~~l~~L~~L~L  252 (782)
                      +++|+.|++++|.+++..   .......+..+....  +.+....+..... ........... ....+...+.......
T Consensus       109 l~~L~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (384)
T d2omza2         109 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSS--NTISDISALSGLT-SLQQLSFGNQVTDLKPLANLTTLERLDI  182 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGTTCTTCSEEEEEE--EEECCCGGGTTCT-TCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccccccccccccc---ccccccccccccccc--ccccccccccccc-cccccccccccchhhhhccccccccccc
Confidence            888888888888887763   233445666666665  3322221111110 11111111000 1111222223333333


Q ss_pred             cCceeeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCc
Q 044724          253 SNNHFRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNN  332 (782)
Q Consensus       253 s~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~  332 (782)
                      ..|....   ......+++++.+                           ++++|.+.+..+  ...+++|++|++++|.
T Consensus       183 ~~~~~~~---~~~~~~l~~~~~l---------------------------~l~~n~i~~~~~--~~~~~~L~~L~l~~n~  230 (384)
T d2omza2         183 SSNKVSD---ISVLAKLTNLESL---------------------------IATNNQISDITP--LGILTNLDELSLNGNQ  230 (384)
T ss_dssp             CSSCCCC---CGGGGGCTTCSEE---------------------------ECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             ccccccc---cccccccccccee---------------------------eccCCccCCCCc--ccccCCCCEEECCCCC
Confidence            3332211   1123344444444                           444444444322  3456789999999998


Q ss_pred             CCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCC
Q 044724          333 FQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNN  412 (782)
Q Consensus       333 l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  412 (782)
                      ++ .++ .+.. +++|+.|++++|.+++..+  +.        .+++|++|++++|.+++..  .+..++.++.+++++|
T Consensus       231 l~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~--~~--------~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         231 LK-DIG-TLAS-LTNLTDLDLANNQISNLAP--LS--------GLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN  295 (384)
T ss_dssp             CC-CCG-GGGG-CTTCSEEECCSSCCCCCGG--GT--------TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred             CC-Ccc-hhhc-ccccchhccccCccCCCCc--cc--------ccccCCEeeccCcccCCCC--cccccccccccccccc
Confidence            87 444 4544 8999999999999886543  33        6889999999999988543  3778889999999999


Q ss_pred             cccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCC
Q 044724          413 NLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHN  492 (782)
Q Consensus       413 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N  492 (782)
                      .+.+.  ..+..++++++|++++|++++..  .+..+++|++|++++|++++ ++         .++++++|++|++++|
T Consensus       296 ~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~---------~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         296 QLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS---------SLANLTNINWLSAGHN  361 (384)
T ss_dssp             CCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG---------GGGGCTTCCEEECCSS
T ss_pred             ccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch---------hHcCCCCCCEEECCCC
Confidence            99753  45788899999999999998753  37889999999999999974 33         4778999999999999


Q ss_pred             cceeecCccccCCCCCCEEEccCC
Q 044724          493 NLEGEVPVQLCGLNQLQLLDLSDN  516 (782)
Q Consensus       493 ~l~~~~~~~~~~l~~L~~L~Ls~N  516 (782)
                      ++++..|  +.++++|+.|+|++|
T Consensus       362 ~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         362 QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cCCCChh--hccCCCCCEeeCCCC
Confidence            9987654  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=9.5e-27  Score=250.66  Aligned_cols=357  Identities=23%  Similarity=0.288  Sum_probs=203.9

Q ss_pred             EeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCCEE
Q 044724          101 LSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLEVL  180 (782)
Q Consensus       101 L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L  180 (782)
                      .+++.+.+++.+.        ...+.+|++|+++++.++..  +.+..+++|++|++++|+++ .+|  .++++++|++|
T Consensus        27 ~~l~~~~~~~~~~--------~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L   93 (384)
T d2omza2          27 TVLGKTNVTDTVS--------QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDI   93 (384)
T ss_dssp             HHTTCSSTTSEEC--------HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEE
T ss_pred             HHhCCCCCCCccC--------HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCc--cccCCcccccc
Confidence            3566666665443        45577899999999988853  56888999999999999998 666  48899999999


Q ss_pred             EcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCceeeee
Q 044724          181 DMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNHFRIP  260 (782)
Q Consensus       181 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~l~~~  260 (782)
                      ++++|++.+..   .++++++|+.|++++  +...+..+..                     ....+.......|.+...
T Consensus        94 ~L~~n~i~~i~---~l~~l~~L~~L~~~~--~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~  147 (384)
T d2omza2          94 LMNNNQIADIT---PLANLTNLTGLTLFN--NQITDIDPLK---------------------NLTNLNRLELSSNTISDI  147 (384)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCCEEECCS--SCCCCCGGGT---------------------TCTTCSEEEEEEEEECCC
T ss_pred             ccccccccccc---ccccccccccccccc--cccccccccc---------------------cccccccccccccccccc
Confidence            99999998763   378888899998887  4433322211                     112233333333333211


Q ss_pred             cCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCccCChh
Q 044724          261 ISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGCIPVE  340 (782)
Q Consensus       261 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ip~~  340 (782)
                      .... ...............                                ....+...+.........|...  ....
T Consensus       148 ~~~~-~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~  192 (384)
T d2omza2         148 SALS-GLTSLQQLSFGNQVT--------------------------------DLKPLANLTTLERLDISSNKVS--DISV  192 (384)
T ss_dssp             GGGT-TCTTCSEEEEEESCC--------------------------------CCGGGTTCTTCCEEECCSSCCC--CCGG
T ss_pred             cccc-ccccccccccccccc--------------------------------hhhhhccccccccccccccccc--cccc
Confidence            1000 000000000000000                                0001111222223333333222  1112


Q ss_pred             hhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCc
Q 044724          341 IGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQ  420 (782)
Q Consensus       341 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  420 (782)
                      ..                                 .+++++.+++++|.+++..|  +..+++|++|++++|.++..  .
T Consensus       193 ~~---------------------------------~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~  235 (384)
T d2omza2         193 LA---------------------------------KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G  235 (384)
T ss_dssp             GG---------------------------------GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred             cc---------------------------------cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--c
Confidence            22                                 23444444444444443322  23344555555555555431  2


Q ss_pred             cccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCc
Q 044724          421 WLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV  500 (782)
Q Consensus       421 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  500 (782)
                      .+..+++|+.+++++|.+++..+  +..+++|++|++++|++++..          .+..++.++.+.++.|.+++.  .
T Consensus       236 ~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~----------~~~~~~~l~~l~~~~n~l~~~--~  301 (384)
T d2omza2         236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLEDI--S  301 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSCC--G
T ss_pred             hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC----------ccccccccccccccccccccc--c
Confidence            34555566666666666554322  555666666666666665432          245566677777777776642  2


Q ss_pred             cccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecch
Q 044724          501 QLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGR  580 (782)
Q Consensus       501 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (782)
                      .+..+++++.|++++|++++..|  +..                                                    
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~~--l~~----------------------------------------------------  327 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDISP--VSS----------------------------------------------------  327 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGG--GGG----------------------------------------------------
T ss_pred             ccchhcccCeEECCCCCCCCCcc--ccc----------------------------------------------------
Confidence            46667777777777777765322  211                                                    


Q ss_pred             hhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          581 VLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                       +++|+.|++++|++++ +| .++++++|++|++++|++++.+|  ++++++|++|+|++|
T Consensus       328 -l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 -LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             4567777777777774 33 57788888888888888886654  778888888888887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.1e-24  Score=226.54  Aligned_cols=269  Identities=20%  Similarity=0.312  Sum_probs=190.4

Q ss_pred             CCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCC
Q 044724          322 SLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKC  401 (782)
Q Consensus       322 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  401 (782)
                      ..+.+|-++++++ .+|..+.   +++++|++++|+++...+.+|.        ++++|++|++++|.+....|..|..+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~--------~l~~L~~L~l~~n~~~~i~~~~f~~l   78 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPL   78 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTT--------TCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhh--------ccccccccccccccccccchhhhhCC
Confidence            4677888888888 7887653   5788899998888766666666        68888888888888887777888888


Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      +.|++|++++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|.........      ..+..+
T Consensus        79 ~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~------~~~~~l  149 (305)
T d1xkua_          79 VKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN------GAFQGM  149 (305)
T ss_dssp             TTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT------TGGGGC
T ss_pred             CccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCc------cccccc
Confidence            888888888888874 44432  356788888888888777777777777778887777543211100      345667


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK  561 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (782)
                      ++|+++++++|.++ .+|..+  +++|+.|++++|..++..+..+..                                 
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~---------------------------------  193 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG---------------------------------  193 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTT---------------------------------
T ss_pred             cccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhc---------------------------------
Confidence            77788888887776 344332  567777777777777666554433                                 


Q ss_pred             cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                                          ++.++.|++++|.+++..|..+.++++|++|+|++|+|+ .+|..|.++++|++|+|++|
T Consensus       194 --------------------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         194 --------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             --------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             --------------------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCC
Confidence                                335667777777777777777777777777777777777 45667777777777777777


Q ss_pred             ccccCCchhh------hcCCCCcEEEcccCcCc
Q 044724          642 KLNGKIPRQL------VELNAFVVFSFACNNLS  668 (782)
Q Consensus       642 ~l~~~ip~~l------~~l~~L~~L~ls~N~l~  668 (782)
                      +|+...+..|      ..+.+|+.|++++|+++
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7774433232      34566777777777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.9e-24  Score=224.61  Aligned_cols=269  Identities=24%  Similarity=0.306  Sum_probs=224.5

Q ss_pred             CCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcC
Q 044724          347 SLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLT  426 (782)
Q Consensus       347 ~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  426 (782)
                      ..+.++-+++.++ .+|..+.          +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~----------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP----------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV   79 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC----------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             cCCEEEecCCCCC-ccCCCCC----------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC
Confidence            4567888888887 4455432          5799999999999977667899999999999999999988888999999


Q ss_pred             CCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcce--eecCccccC
Q 044724          427 GLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE--GEVPVQLCG  504 (782)
Q Consensus       427 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~  504 (782)
                      +|++|++++|+++. +|..+  ...++.|++++|.+.+..+        ..+.....++.++...|...  ...+..+..
T Consensus        80 ~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~--------~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~  148 (305)
T d1xkua_          80 KLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRK--------SVFNGLNQMIVVELGTNPLKSSGIENGAFQG  148 (305)
T ss_dssp             TCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCH--------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             ccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhh--------hhhhccccccccccccccccccCCCcccccc
Confidence            99999999999985 44433  3578999999999986544        55677888889999888643  344667888


Q ss_pred             CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcc
Q 044724          505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSL  584 (782)
Q Consensus       505 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (782)
                      +++|+.+++++|.++. +|..+                                                       +++
T Consensus       149 l~~L~~l~l~~n~l~~-l~~~~-------------------------------------------------------~~~  172 (305)
T d1xkua_         149 MKKLSYIRIADTNITT-IPQGL-------------------------------------------------------PPS  172 (305)
T ss_dssp             CTTCCEEECCSSCCCS-CCSSC-------------------------------------------------------CTT
T ss_pred             ccccCccccccCCccc-cCccc-------------------------------------------------------CCc
Confidence            9999999999998863 33211                                                       457


Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                      |+.|++++|..++..+..|.+++.+++|++++|.+++..+..|.++++|++|+|++|+|+ .+|.+|.++++|++|++++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCC
Confidence            899999999999999999999999999999999999999999999999999999999998 6788999999999999999


Q ss_pred             CcCcccCCCC------ccccCCCCcccccCCCCCCC
Q 044724          665 NNLSGKIPEL------TAQFATFNESSYKGNPFLCG  694 (782)
Q Consensus       665 N~l~~~~p~~------~~~~~~l~~~~~~gNp~lC~  694 (782)
                      |+|+...+..      .....+++.+++.|||+-+.
T Consensus       252 N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            9999754432      23456778889999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.4e-25  Score=225.03  Aligned_cols=226  Identities=23%  Similarity=0.248  Sum_probs=153.1

Q ss_pred             EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc-CC
Q 044724          382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS-DN  460 (782)
Q Consensus       382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N  460 (782)
                      .++.++++++ .+|..+.  +.+++|+|++|+|+...+.+|.++++|++|++++|++.+..+..+..++.++.++.. .|
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4566666666 4555443  457778888888776666677777777777777777777777777777777777654 34


Q ss_pred             cceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCC
Q 044724          461 NISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSS  540 (782)
Q Consensus       461 ~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  540 (782)
                      .++...|        ..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+..            
T Consensus        92 ~~~~l~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~------------  151 (284)
T d1ozna_          92 QLRSVDP--------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------  151 (284)
T ss_dssp             TCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             ccccccc--------hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc------------
Confidence            4443333        45666777777777777776555666666777777777777776554444432            


Q ss_pred             CCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccc
Q 044724          541 LDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLT  620 (782)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  620 (782)
                                                               ++.|+.|++++|++++..|.+|.++++|+.+++++|+++
T Consensus       152 -----------------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         152 -----------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence                                                     235667777777777666667777777777777777777


Q ss_pred             ccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccC
Q 044724          621 GTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKI  671 (782)
Q Consensus       621 ~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~  671 (782)
                      +..|..|.++++|++||+++|++++..|..|..+++|++|++++|++.+..
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            777777777777777777777777666667777777777777666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=223.10  Aligned_cols=234  Identities=21%  Similarity=0.236  Sum_probs=149.3

Q ss_pred             CCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCC-CCccccCCChhccCCCCCceEe
Q 044724          378 TNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMP-KNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       378 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +.+++|+|++|++++..+.+|.++++|++|++++|++....+..+..+..++.+... .|.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            346677777777766555667777777777777777776666666666666666553 4556655566677777777777


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN  536 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  536 (782)
                      +++|.+....+        ..+...++|+.+++++|++++..+..|..+++|+.|++++|++++..+..+..        
T Consensus       112 l~~n~~~~~~~--------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~--------  175 (284)
T d1ozna_         112 LDRCGLQELGP--------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--------  175 (284)
T ss_dssp             CTTSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------
T ss_pred             cCCcccccccc--------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc--------
Confidence            77777654444        34455666777777777776555666666777777777777776555544433        


Q ss_pred             CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724          537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH  616 (782)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  616 (782)
                                                                   +++|+.+++++|++++..|..|.++++|++|++++
T Consensus       176 ---------------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         176 ---------------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------ccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence                                                         34566777777777766677777777777777777


Q ss_pred             ccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCC
Q 044724          617 NNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPE  673 (782)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~  673 (782)
                      |++++..|..|+++++|+.|++++|.+.+.-+.. .-...++.+....+++.+..|.
T Consensus       211 N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            7777666667777777777777777776543311 0111233344455556555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=212.07  Aligned_cols=112  Identities=24%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFA  663 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  663 (782)
                      +|+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            44445555555444444445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcCcccCCCCccccCCCCcccccCCCCCCCCC
Q 044724          664 CNNLSGKIPELTAQFATFNESSYKGNPFLCGLP  696 (782)
Q Consensus       664 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~  696 (782)
                      +|+|+ .+|..+..+..++.+++.||||.|+|.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            55555 344334445555666666777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=206.13  Aligned_cols=200  Identities=23%  Similarity=0.212  Sum_probs=135.8

Q ss_pred             CCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          402 FLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       402 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +|         .++.+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~---------~~~~l   76 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ---------VDGTL   76 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE---------CCSCC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc---------ccccc
Confidence            34444555555555 3444332  356666666666665555566666666666666666653 22         13456


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccc
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKK  561 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (782)
                      ++|++|+|++|+++ ..+..+..+++|+.|++++|.+.+..+..+..                                 
T Consensus        77 ~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------  122 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG---------------------------------  122 (266)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccceeecccccc---------------------------------
Confidence            67777777777776 34556677777777777777776544433321                                 


Q ss_pred             cccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCC
Q 044724          562 SHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYN  641 (782)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  641 (782)
                                          +.+++.|++++|.+++..+..+..++.|+.|++++|++++..+..|+.+++|++|||++|
T Consensus       123 --------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         123 --------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             --------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence                                446777888888887776777777888888888888888777777888888888888888


Q ss_pred             ccccCCchhhhcCCCCcEEEcccCcCcc
Q 044724          642 KLNGKIPRQLVELNAFVVFSFACNNLSG  669 (782)
Q Consensus       642 ~l~~~ip~~l~~l~~L~~L~ls~N~l~~  669 (782)
                      +|+ .+|+.+..+++|+.|+|++|++..
T Consensus       183 ~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         183 SLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            888 677777788888888888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=1.8e-17  Score=174.80  Aligned_cols=299  Identities=22%  Similarity=0.217  Sum_probs=143.2

Q ss_pred             CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCC
Q 044724           97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNN  176 (782)
Q Consensus        97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  176 (782)
                      ++++|||++++++. +|+       +  .++|++|+|++|+++ .+|+.   ..+|++|++++|+++ .++.  +  .+.
T Consensus        39 ~l~~LdLs~~~L~~-lp~-------~--~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE-------L--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPL   99 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS-------C--CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTT
T ss_pred             CCCEEEeCCCCCCC-CCC-------C--CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--ccc
Confidence            46666777766653 332       1  356777777777776 34543   346677777777765 4442  1  135


Q ss_pred             CCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeEeCCCCCCCCCCCCCCCeEEccCce
Q 044724          177 LEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHLSLSNFSPSNDSWTLNQVLWLSNNH  256 (782)
Q Consensus       177 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L~L~~~ip~~~~l~~L~~L~Ls~n~  256 (782)
                      |++|++++|.+...  | .++.+++|++|++++  +.+.... .    ....+..+.+..                  +.
T Consensus       100 L~~L~L~~n~l~~l--p-~~~~l~~L~~L~l~~--~~~~~~~-~----~~~~l~~l~~~~------------------~~  151 (353)
T d1jl5a_         100 LEYLGVSNNQLEKL--P-ELQNSSFLKIIDVDN--NSLKKLP-D----LPPSLEFIAAGN------------------NQ  151 (353)
T ss_dssp             CCEEECCSSCCSSC--C-CCTTCTTCCEEECCS--SCCSCCC-C----CCTTCCEEECCS------------------SC
T ss_pred             cccccccccccccc--c-chhhhccceeecccc--ccccccc-c----ccccccchhhcc------------------cc
Confidence            77777777777654  3 345667777777766  3222111 0    022333333322                  21


Q ss_pred             eeeecCCCCcCCCCCCcEEEccCCccceeccccccCCCCCCCccEEEccCCCCCCCCccCCCCCCCCcEEEccCCcCCcc
Q 044724          257 FRIPISPDPLFNHSRLKIFHAYNNEIHAEITESHSLTAPTFQLKSLSLSSGYGDGPFRLPIHSHKSLRLLDVSNNNFQGC  336 (782)
Q Consensus       257 l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  336 (782)
                      ..   ....+..++.++.+++..|.......       .....+.+.........  ......++.|+.+++++|... .
T Consensus       152 ~~---~~~~l~~l~~l~~L~l~~n~~~~~~~-------~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~-~  218 (353)
T d1jl5a_         152 LE---ELPELQNLPFLTAIYADNNSLKKLPD-------LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-T  218 (353)
T ss_dssp             CS---SCCCCTTCTTCCEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS-S
T ss_pred             cc---ccccccccccceeccccccccccccc-------ccccccccccccccccc--ccccccccccccccccccccc-c
Confidence            11   01123334444444444444322110       00111222222111111  112335566777777776655 3


Q ss_pred             CChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccc
Q 044724          337 IPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSG  416 (782)
Q Consensus       337 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  416 (782)
                      +|..    ..++..+.+..+.+.....            ....+...++..+.+.+...    -.......++..+.+.+
T Consensus       219 ~~~~----~~~l~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~  278 (353)
T d1jl5a_         219 LPDL----PPSLEALNVRDNYLTDLPE------------LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS  278 (353)
T ss_dssp             CCSC----CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE
T ss_pred             cccc----ccccccccccccccccccc------------cccccccccccccccccccc----ccchhcccccccCcccc
Confidence            4422    3456666666666543211            23445555555554443210    01233445555555442


Q ss_pred             cCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcce
Q 044724          417 KIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE  495 (782)
Q Consensus       417 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~  495 (782)
                      .    ...+++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|.           .+++|++|++++|+++
T Consensus       279 ~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~-----------~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         279 L----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE-----------LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             E----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC-----------CCTTCCEEECCSSCCS
T ss_pred             c----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc-----------ccCCCCEEECcCCcCC
Confidence            2    123455666666666665 3343   2355666666666665 3441           2345666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=4.3e-17  Score=171.88  Aligned_cols=75  Identities=21%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             ceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccC
Q 044724          586 SGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACN  665 (782)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  665 (782)
                      ...++..+.+.+.    ...+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            3455555555432    233567777888888777 45543   467777888888777 45643   456777888888


Q ss_pred             cCcccCCC
Q 044724          666 NLSGKIPE  673 (782)
Q Consensus       666 ~l~~~~p~  673 (782)
                      +++ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            776 4555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.1e-18  Score=168.72  Aligned_cols=203  Identities=17%  Similarity=0.298  Sum_probs=120.0

Q ss_pred             EEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcc
Q 044724          383 LLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNI  462 (782)
Q Consensus       383 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  462 (782)
                      ++++.+.+++.+  .+..+.+|+.|++.+|.++. + ..+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            334444444332  23344555555665555553 2 235556666666666665554322  55566666666666655


Q ss_pred             eeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCC
Q 044724          463 SGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLD  542 (782)
Q Consensus       463 ~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  542 (782)
                      +. +         ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+....+  +.               
T Consensus        98 ~~-i---------~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~---------------  148 (227)
T d1h6ua2          98 KN-V---------SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA---------------  148 (227)
T ss_dssp             SC-C---------GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG---------------
T ss_pred             cc-c---------cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc---------------
Confidence            42 2         2345566666666666665432  234556666677766666543211  10               


Q ss_pred             CCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccccccccc
Q 044724          543 KPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGT  622 (782)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  622 (782)
                                                            ..++|+.|++++|.+++.  ..++++++|++|+|++|++++.
T Consensus       149 --------------------------------------~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         149 --------------------------------------GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             --------------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             --------------------------------------cccccccccccccccccc--hhhcccccceecccCCCccCCC
Confidence                                                  134567777777777643  2367778888888888888753


Q ss_pred             CCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          623 IPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       623 ~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                       | .++++++|++|+|++|++++. | .+.++++|++|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence             3 277788888888888888754 3 377888888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8e-21  Score=208.67  Aligned_cols=107  Identities=15%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             CCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCC----cchhhcCCCCCCCEEEccCCcCcCcCChh---
Q 044724           97 QLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNN----SILSSLTRLSSVRSLKLSYNRLEGSIDVK---  169 (782)
Q Consensus        97 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~---  169 (782)
                      +|++||+++|++++..-     .+.+..++++|+|+|++|.++.    .+...+..+++|++|||++|.++ .....   
T Consensus         3 ~l~~ld~~~~~i~~~~~-----~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~-~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARW-----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHH-----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHH-----HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC-hHHHHHHH
Confidence            45667777777754211     0124556777778888777764    23455667778888888888764 11111   


Q ss_pred             -hhc-CCCCCCEEEcccCCCCCcc---CCCCCCCCCCccEEeccc
Q 044724          170 -EFD-SFNNLEVLDMKRNEIDNLV---VPQGFPHFKSLEHLDMSY  209 (782)
Q Consensus       170 -~~~-~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~  209 (782)
                       .+. ...+|++|+|++|++++..   ++..+..+++|++|++++
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence             111 2346888888888776532   234566777888888877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=7e-18  Score=166.11  Aligned_cols=187  Identities=25%  Similarity=0.374  Sum_probs=117.1

Q ss_pred             CCCCCEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEe
Q 044724          377 LTNVRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILD  456 (782)
Q Consensus       377 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  456 (782)
                      +.+|++|++.+|.++..  +.+..+++|++|++++|.+++..|  +..+++|+++++++|.++. + ..+.++++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            45555555555555532  235556666666666666654332  5666666666666666552 2 2456666777777


Q ss_pred             ccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCccccccccccccc
Q 044724          457 ISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYN  536 (782)
Q Consensus       457 Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  536 (782)
                      ++++...+.          ..+...+.++.+.++++.+....  .+..+++|+.|++++|.+.+..+  +..        
T Consensus       114 l~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~--------  171 (227)
T d1h6ua2         114 LTSTQITDV----------TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LAN--------  171 (227)
T ss_dssp             CTTSCCCCC----------GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTT--------
T ss_pred             ccccccccc----------chhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcc--------
Confidence            776665533          22445667777777777765332  35666777777777777653221  111        


Q ss_pred             CCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeeccc
Q 044724          537 NNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSH  616 (782)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  616 (782)
                                                                   +++|+.|||++|++++ +| .++++++|++|+|++
T Consensus       172 ---------------------------------------------l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         172 ---------------------------------------------LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKN  204 (227)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTT
T ss_pred             ---------------------------------------------cccceecccCCCccCC-Ch-hhcCCCCCCEEECcC
Confidence                                                         4567788888887775 33 377888888888888


Q ss_pred             ccccccCCccccCCCCCCEEecCC
Q 044724          617 NNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                      |++++..|  ++++++|+.|++++
T Consensus       205 N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         205 NQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CcCCCCcc--cccCCCCCEEEeeC
Confidence            88885432  77888888888863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-20  Score=206.49  Aligned_cols=299  Identities=18%  Similarity=0.125  Sum_probs=165.2

Q ss_pred             CCCCCCCcEEEccCCcCCccCChhhhhcC----CCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccc
Q 044724          317 IHSHKSLRLLDVSNNNFQGCIPVEIGDIL----PSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVG  392 (782)
Q Consensus       317 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l----~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~  392 (782)
                      +..+++|++|++++|.+.......+...+    ....................+    ...+.....++.++++++....
T Consensus       108 l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~ls~~~~~~  183 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL----ASVLRAKPDFKELTVSNNDINE  183 (460)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----HHHHHHCTTCCEEECCSSBCHH
T ss_pred             hhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc----cccccccccccccccccccccc
Confidence            44567788888888877632222222111    122333333332221100000    0011134567777777766542


Q ss_pred             cC----Cccc-cCCCCCcEEECcCCccccc----CCccccCcCCCCEEeCCCCccccC-----CChhccCCCCCceEecc
Q 044724          393 EI----PQSL-SKCFLLKGLYLNNNNLSGK----IPQWLGNLTGLQHIIMPKNHLEGP-----IPVEFCQLDWLQILDIS  458 (782)
Q Consensus       393 ~~----~~~l-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls  458 (782)
                      ..    ...+ ........+++..+.+...    ....+...+.++.+++++|.+...     .+........++.++++
T Consensus       184 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~  263 (460)
T d1z7xw1         184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  263 (460)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccc
Confidence            11    0111 1223456677777665422    112344567788888888765422     23334456778888888


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcc-----ccCCCCCCEEEccCCcCCCcCCcccccccccc
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQ-----LCGLNQLQLLDLSDNNLHGLIPPFFYNTALHE  533 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  533 (782)
                      +|.+.......+.    ..+...+.++.+++++|.++......     ......|+.+++++|.++......+....   
T Consensus       264 ~n~i~~~~~~~~~----~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~---  336 (460)
T d1z7xw1         264 ECGITAKGCGDLC----RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL---  336 (460)
T ss_dssp             TSCCCHHHHHHHH----HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH---
T ss_pred             ccccccccccccc----ccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccc---
Confidence            8877543211000    33456778888888888875432221     12345788888888877643222221100   


Q ss_pred             cccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCcc----CCcccc-cccc
Q 044724          534 SYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGH----IPPPIG-NLTR  608 (782)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~  608 (782)
                                                                    ....+|+.|||++|+++..    ++..+. ..+.
T Consensus       337 ----------------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~  370 (460)
T d1z7xw1         337 ----------------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  370 (460)
T ss_dssp             ----------------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             ----------------------------------------------ccccchhhhheeeecccCcccchhhhhhhcccCC
Confidence                                                          0134688888888887642    233333 3566


Q ss_pred             cceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchhhh-----cCCCCcEEEcccCcCcccCC
Q 044724          609 IQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQLV-----ELNAFVVFSFACNNLSGKIP  672 (782)
Q Consensus       609 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~-----~l~~L~~L~ls~N~l~~~~p  672 (782)
                      |++|+|++|.|+..    ++..+..+++|++|||++|+++......+.     +...|+.|++.+|++....+
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            88888888888742    445566778888888888888754443332     23468888888888765433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9e-18  Score=167.22  Aligned_cols=133  Identities=22%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CCEEEccCccccccCCccccCCCCCcEEECcCCcccccC-CccccCcCCCCEEeCC-CCccccCCChhccCCCCCceEec
Q 044724          380 VRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKI-PQWLGNLTGLQHIIMP-KNHLEGPIPVEFCQLDWLQILDI  457 (782)
Q Consensus       380 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L  457 (782)
                      +++|++++|+++...+.+|.++++|++|++++|.+...+ +..|.+++.++++.+. .|.+....+..|.++++|+++++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            444444444444333334444555555555555444322 2344455555555443 23444444555555555555555


Q ss_pred             cCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCC-CCCEEEccCCcCC
Q 044724          458 SDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLN-QLQLLDLSDNNLH  519 (782)
Q Consensus       458 s~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  519 (782)
                      ++|++....+.       ..+..+..++.+..+++.+....+..|.+++ .++.|++++|+++
T Consensus       111 ~~~~l~~~~~~-------~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1         111 SNTGIKHLPDV-------HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             ESCCCCSCCCC-------TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             chhhhcccccc-------cccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            55555422111       1223334444444455555444444444332 3444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=4.4e-18  Score=162.65  Aligned_cols=176  Identities=20%  Similarity=0.248  Sum_probs=126.2

Q ss_pred             ceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceee-cCccccCCCCCCEEEccCCcCCCcCCcccccccc
Q 044724          453 QILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE-VPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTAL  531 (782)
Q Consensus       453 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  531 (782)
                      ++++.++++++ .+|..        +  .+++++|+|++|+|++. .+..|.++++|+.|+|++|++.+..+..+..   
T Consensus        11 ~~v~Cs~~~L~-~iP~~--------l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~---   76 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRD--------I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSC--------C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT---
T ss_pred             CEEEEeCCCcC-ccCCC--------C--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc---
Confidence            45667777776 45531        1  25677778888877653 3556677888888888888887766655543   


Q ss_pred             cccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccce
Q 044724          532 HESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQI  611 (782)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  611 (782)
                                                                        +++|+.|+|++|++++..|.+|.++++|++
T Consensus        77 --------------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          77 --------------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             --------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             --------------------------------------------------ccccceeeeccccccccCHHHHhCCCcccc
Confidence                                                              446788888888888777888888999999


Q ss_pred             eecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEcccCcCcccCCCCccccCCCCcccccCCCC
Q 044724          612 LNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFACNNLSGKIPELTAQFATFNESSYKGNPF  691 (782)
Q Consensus       612 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~  691 (782)
                      |+|++|+|++..|+.|..+++|++|+|++|.+.+..+... -...++.+.+..|.+++..|..   +..++..++..|.+
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF  182 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTC
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhC
Confidence            9999999998888889999999999999998876443221 1123455567778888777753   44555677888888


Q ss_pred             CCCCC
Q 044724          692 LCGLP  696 (782)
Q Consensus       692 lC~~~  696 (782)
                      .|.++
T Consensus       183 ~C~~~  187 (192)
T d1w8aa_         183 KCSSE  187 (192)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            88654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-17  Score=163.81  Aligned_cols=219  Identities=19%  Similarity=0.128  Sum_probs=123.7

Q ss_pred             CEEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccC-CChhccCCCCCceEeccC
Q 044724          381 RWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGP-IPVEFCQLDWLQILDISD  459 (782)
Q Consensus       381 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~  459 (782)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+... .+..|.+++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666666666 4554432  3566777777776654445566666666666666665543 334566666666666543


Q ss_pred             -CcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCc-cccCCCCCCEEEccCCcCCCcCCcccccccccccccC
Q 044724          460 -NNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNN  537 (782)
Q Consensus       460 -N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~  537 (782)
                       |++....+        ..|.++++|+++++++|++....+. .+..+..+..+..+++.+....+..+...        
T Consensus        88 ~n~l~~~~~--------~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~--------  151 (242)
T d1xwdc1          88 ANNLLYINP--------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------  151 (242)
T ss_dssp             CTTCCEECT--------TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS--------
T ss_pred             ccccccccc--------ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc--------
Confidence             45554444        3445566666666666666532221 12223334444444444443222222110        


Q ss_pred             CCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccc
Q 044724          538 NSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN  617 (782)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  617 (782)
                                                                  ...++.|++++|+++...+..+.....++.+++++|
T Consensus       152 --------------------------------------------~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         152 --------------------------------------------SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             --------------------------------------------BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCT
T ss_pred             --------------------------------------------cccceeeecccccccccccccccchhhhcccccccc
Confidence                                                        124667788888887554444444333344456777


Q ss_pred             cccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          618 NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      +++...+..|.++++|++|||++|+|+...+..|.+++.|+++++
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            777555566778888888888888887554555666666665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.5e-17  Score=157.90  Aligned_cols=165  Identities=22%  Similarity=0.336  Sum_probs=103.8

Q ss_pred             cCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccC
Q 044724          425 LTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCG  504 (782)
Q Consensus       425 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  504 (782)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++. +         .++.+++|++|++++|++++ ++ .+..
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~---------~~~~l~~L~~L~l~~n~i~~-l~-~l~~  110 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K---------PLANLKNLGWLFLDENKVKD-LS-SLKD  110 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G---------GGTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c---------ccccCccccccccccccccc-cc-cccc
Confidence            445555666665555322  245566666666666666542 2         24556666666776666663 33 4666


Q ss_pred             CCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhcc
Q 044724          505 LNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSL  584 (782)
Q Consensus       505 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (782)
                      +++|+.|++++|.+... + .+..                                                     ++.
T Consensus       111 l~~L~~L~l~~~~~~~~-~-~l~~-----------------------------------------------------l~~  135 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISDI-N-GLVH-----------------------------------------------------LPQ  135 (210)
T ss_dssp             CTTCCEEECTTSCCCCC-G-GGGG-----------------------------------------------------CTT
T ss_pred             ccccccccccccccccc-c-cccc-----------------------------------------------------ccc
Confidence            67777777777765421 1 1111                                                     345


Q ss_pred             cceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEccc
Q 044724          585 LSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSFAC  664 (782)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  664 (782)
                      ++.+++++|.+++  +..+..+++|+.+++++|++++. + .++++++|++|+|++|+++. +| .+.++++|++|++++
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            6677777777763  34566777888888888888753 3 27788888888888888874 44 578888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=4.8e-17  Score=155.29  Aligned_cols=131  Identities=25%  Similarity=0.308  Sum_probs=109.2

Q ss_pred             CCEEEccCccccccCCccccCCCCCcEEECcCCccccc-CCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEecc
Q 044724          380 VRWLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGK-IPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDIS  458 (782)
Q Consensus       380 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  458 (782)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            457788888887 5665553  5788999999999764 45677889999999999999998888899999999999999


Q ss_pred             CCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCc
Q 044724          459 DNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGL  521 (782)
Q Consensus       459 ~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  521 (782)
                      +|+++...|        ..|.++++|++|+|++|+|++..+.+|..+++|++|+|++|++...
T Consensus        87 ~N~l~~l~~--------~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISN--------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECS--------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCH--------HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            999987666        4567889999999999999988888899999999999999988754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.7e-17  Score=156.63  Aligned_cols=165  Identities=23%  Similarity=0.327  Sum_probs=105.9

Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcC
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQING  480 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  480 (782)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++..  .+..+++|++|++++|++++ +|         .+..
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~---------~l~~  110 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS---------SLKD  110 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG---------GGTT
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc---------cccc
Confidence            345566666666655322  2555666666666666666432  24566667777777776653 22         3556


Q ss_pred             CCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCcccccccccccccccc
Q 044724          481 LSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEK  560 (782)
Q Consensus       481 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (782)
                      +++|+.|++++|.+..  ...+..++.++.+++++|.+++..  .+.                                 
T Consensus       111 l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--~~~---------------------------------  153 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT--VLS---------------------------------  153 (210)
T ss_dssp             CTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGG---------------------------------
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccc--ccc---------------------------------
Confidence            6777777777777652  234666777777777777765321  111                                 


Q ss_pred             ccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCC
Q 044724          561 KSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSY  640 (782)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  640 (782)
                                          .+++|+.+++++|++++. + .+.++++|+.|+|++|+++. +| .|.++++|+.|+|++
T Consensus       154 --------------------~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 --------------------RLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --------------------GCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             --------------------cccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                                145677888888888753 3 37788888888888888874 44 588888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.4e-16  Score=150.20  Aligned_cols=162  Identities=23%  Similarity=0.375  Sum_probs=92.4

Q ss_pred             CcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCcccc
Q 044724          424 NLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLC  503 (782)
Q Consensus       424 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  503 (782)
                      .+.++++|++++|.++..  ..+..+++|++|++++|++++..          .++++++|++|++++|.+.. ++ .+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~----------~l~~l~~L~~L~l~~n~~~~-~~-~l~  103 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT----------PLKNLTKLVDILMNNNQIAD-IT-PLA  103 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCC-CG-GGT
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc----------cccCCccccccccccccccc-cc-ccc
Confidence            344555555555555432  23455566666666666655321          24556666666666666542 22 355


Q ss_pred             CCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccccccccccccEEEEEecCCeeeecchhhc
Q 044724          504 GLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLS  583 (782)
Q Consensus       504 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (782)
                      +++.|+.|++++|.+....+  +.                                                     .++
T Consensus       104 ~l~~L~~L~l~~~~~~~~~~--~~-----------------------------------------------------~l~  128 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITDIDP--LK-----------------------------------------------------NLT  128 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GT-----------------------------------------------------TCT
T ss_pred             cccccccccccccccccccc--cc-----------------------------------------------------hhh
Confidence            66666666666665543211  11                                                     034


Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEE
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVF  660 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  660 (782)
                      +|+.|++++|++.. + +.+..+++|+.|++++|++++..  .++++++|++|++++|++++ +| .++++++|+.|
T Consensus       129 ~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         129 NLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            56666666666653 2 34666777777777777776432  36677777777777777764 33 46667776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.2e-17  Score=156.02  Aligned_cols=176  Identities=23%  Similarity=0.346  Sum_probs=107.1

Q ss_pred             EccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCcce
Q 044724          384 LLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNNIS  463 (782)
Q Consensus       384 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  463 (782)
                      .++.+.+++.++  ...+.++++|++++|.+...  +.+..+++|++|++++|++++..+  ++++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            344444443332  22345566666666666532  235566666666666666664322  666667777777776665


Q ss_pred             eeCCCCccccchhhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCC
Q 044724          464 GSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDK  543 (782)
Q Consensus       464 ~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~  543 (782)
                      . ++         .+.++++|+.|++++|.+...  ..+..+++|+.|++++|++.. ++ .+..               
T Consensus        98 ~-~~---------~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~---------------  148 (199)
T d2omxa2          98 D-IT---------PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSG---------------  148 (199)
T ss_dssp             C-CG---------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTT---------------
T ss_pred             c-cc---------ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccc---------------
Confidence            3 22         355667777777777766532  236667777777777777653 11 1211               


Q ss_pred             CccccccccccccccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccC
Q 044724          544 PFEISFDFRNTEKKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTI  623 (782)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  623 (782)
                                                            +++++.|++++|++++. + .++++++|++|++++|++++ +
T Consensus       149 --------------------------------------~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i  187 (199)
T d2omxa2         149 --------------------------------------LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-I  187 (199)
T ss_dssp             --------------------------------------CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-C
T ss_pred             --------------------------------------cccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-C
Confidence                                                  34677777777777753 2 47788888888888888874 3


Q ss_pred             CccccCCCCCCEE
Q 044724          624 PSTFSKLEAYRNL  636 (782)
Q Consensus       624 p~~~~~l~~L~~L  636 (782)
                      | .++++++|++|
T Consensus       188 ~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 S-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCcC
Confidence            3 47778888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=7.5e-15  Score=128.23  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=98.7

Q ss_pred             CEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhhhcCCCCCC
Q 044724           99 ESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKEFDSFNNLE  178 (782)
Q Consensus        99 ~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  178 (782)
                      |+|||++|+++.. +.       +.++++|++|++++|.++. +|+.|+.+++|++|++++|.++ .+|  .+..+++|+
T Consensus         1 R~L~Ls~n~l~~l-~~-------l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CH-------LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSC-CC-------GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCC
T ss_pred             CEEEcCCCCCCCC-cc-------cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC--ccccccccC
Confidence            6799999999743 32       8889999999999999984 6778999999999999999998 676  589999999


Q ss_pred             EEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccchHHHhhcCCCCCeE
Q 044724          179 VLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNFLQIIGESMPSLKHL  232 (782)
Q Consensus       179 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~~l~~L~~L  232 (782)
                      +|++++|+++.......+..+++|++|++++|...-....+..+...+|+|+.+
T Consensus        69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999887433568899999999999965443334455554447887766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-15  Score=153.43  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             hcccceeeccCC-ccCccCCcccccccccceeecccc-cccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcE
Q 044724          582 LSLLSGIDLSCN-KLIGHIPPPIGNLTRIQILNLSHN-NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVV  659 (782)
Q Consensus       582 l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  659 (782)
                      +++|+.||+++| .+++..+..+..+++|++|+|++| .+++.....++++++|+.|+++++--.+.++.....++.|+ 
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~-  252 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-  252 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE-
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc-
Confidence            456777888775 466666677888889999999984 67777777788899999999998822223333335566664 


Q ss_pred             EEcccCcCcccCCC
Q 044724          660 FSFACNNLSGKIPE  673 (782)
Q Consensus       660 L~ls~N~l~~~~p~  673 (782)
                        +..++++...+.
T Consensus       253 --i~~~~ls~~~~~  264 (284)
T d2astb2         253 --INCSHFTTIARP  264 (284)
T ss_dssp             --ESCCCSCCTTCS
T ss_pred             --ccCccCCCCCCC
Confidence              577788876655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3e-15  Score=152.03  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=39.9

Q ss_pred             ccccccceeecccc-cccccCCccccCCCCCCEEecCCC-ccccCCchhhhcCCCCcEEEcccC
Q 044724          604 GNLTRIQILNLSHN-NLTGTIPSTFSKLEAYRNLDLSYN-KLNGKIPRQLVELNAFVVFSFACN  665 (782)
Q Consensus       604 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N-~l~~~ip~~l~~l~~L~~L~ls~N  665 (782)
                      ..+++|++|++++| .+++..+..+..+++|++|+++++ .+++.....++++++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            44566777777664 356555666666677777777763 566555556666677777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=129.91  Aligned_cols=133  Identities=20%  Similarity=0.264  Sum_probs=104.2

Q ss_pred             cccCCCCCCEEeCCCCCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCcchhhcCCCCCCCEEEccCCcCcCcCChhh
Q 044724           91 LFTPFQQLESLSLSANNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNSILSSLTRLSSVRSLKLSYNRLEGSIDVKE  170 (782)
Q Consensus        91 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~  170 (782)
                      .|.+...+++|||++|+|+.. +.      .+..+++|++|||++|.++. + +.|..+++|++|++++|+++ .+|...
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~------~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~-~l~~~~   82 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-EN------LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGL   82 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC------GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCH
T ss_pred             hccCcCcCcEEECCCCCCCcc-Cc------cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhccccccc-CCCccc
Confidence            366788999999999999755 33      25778999999999999985 3 46899999999999999998 777656


Q ss_pred             hcCCCCCCEEEcccCCCCCccCCCCCCCCCCccEEecccCcccccccc-hHHHhhcCCCCCeEeC
Q 044724          171 FDSFNNLEVLDMKRNEIDNLVVPQGFPHFKSLEHLDMSYAHIALNTNF-LQIIGESMPSLKHLSL  234 (782)
Q Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~l~~~l~~L~~L~L  234 (782)
                      +..+++|++|++++|+++.......+..+++|++|++++|...-.... +..+.. +++|+.||-
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~-lp~L~~LD~  146 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK-VPQVRVLDF  146 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH-CTTCSEETT
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHH-CCCcCeeCC
Confidence            788999999999999998763225688899999999999543211111 234555 888888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=6.1e-15  Score=154.64  Aligned_cols=87  Identities=17%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             cccceeeccCCccCcc----CCcccccccccceeecccccccccCCc----ccc--CCCCCCEEecCCCccccC----Cc
Q 044724          583 SLLSGIDLSCNKLIGH----IPPPIGNLTRIQILNLSHNNLTGTIPS----TFS--KLEAYRNLDLSYNKLNGK----IP  648 (782)
Q Consensus       583 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~--~l~~L~~LdLs~N~l~~~----ip  648 (782)
                      ++|+.|+|++|.++..    +...+..+++|++|+|++|.|++.-..    .+.  ..+.|++||+++|+|+..    +.
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~  294 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  294 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence            3455566666655421    233455666677777777776643222    222  235688888888877643    23


Q ss_pred             hhhh-cCCCCcEEEcccCcCcc
Q 044724          649 RQLV-ELNAFVVFSFACNNLSG  669 (782)
Q Consensus       649 ~~l~-~l~~L~~L~ls~N~l~~  669 (782)
                      ..+. +.+.|++|++++|++..
T Consensus       295 ~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         295 TVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHccCCCCCEEECCCCcCCC
Confidence            3332 46778888888888754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-13  Score=123.76  Aligned_cols=127  Identities=19%  Similarity=0.138  Sum_probs=77.5

Q ss_pred             CCCCCCcEEEccCCcCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCcc
Q 044724          318 HSHKSLRLLDVSNNNFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQS  397 (782)
Q Consensus       318 ~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  397 (782)
                      .+..++++||+++|+|+ .+|... ..+++|+.|++++|.++.. + .+.        .+++|++|++++|+++...+..
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~~l-~-~~~--------~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIRKL-D-GFP--------LLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCCEE-C-CCC--------CCSSCCEEECCSSCCCEECSCH
T ss_pred             cCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCCcc-C-Ccc--------cCcchhhhhcccccccCCCccc
Confidence            35567888888888887 666433 3377788888888877643 2 233        5677777777777776554444


Q ss_pred             ccCCCCCcEEECcCCcccccCC-ccccCcCCCCEEeCCCCccccCC---ChhccCCCCCceEe
Q 044724          398 LSKCFLLKGLYLNNNNLSGKIP-QWLGNLTGLQHIIMPKNHLEGPI---PVEFCQLDWLQILD  456 (782)
Q Consensus       398 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~  456 (782)
                      +..+++|++|++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5566677777777777653221 34555666666666666655322   12344555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-13  Score=122.76  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=97.8

Q ss_pred             ccceeeccCCccCccCCcccccccccceeecccc-cccccCCccccCCCCCCEEecCCCccccCCchhhhcCCCCcEEEc
Q 044724          584 LLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHN-NLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPRQLVELNAFVVFSF  662 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  662 (782)
                      ..+.++.+++.+. .+|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567899999888 57888999999999999876 599777889999999999999999999888999999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcccccCCCCCCCCCC
Q 044724          663 ACNNLSGKIPELTAQFATFNESSYKGNPFLCGLPL  697 (782)
Q Consensus       663 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~lC~~~l  697 (782)
                      ++|+|+...+..+ ....+..+++.|||+.|+|.+
T Consensus        88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            9999997666644 344688999999999999854

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=1.7e-14  Score=151.14  Aligned_cols=112  Identities=13%  Similarity=0.179  Sum_probs=82.3

Q ss_pred             hcccceeeccCCccCcc-----CCcccccccccceeeccccccccc----CCccccCCCCCCEEecCCCccccCCchh--
Q 044724          582 LSLLSGIDLSCNKLIGH-----IPPPIGNLTRIQILNLSHNNLTGT----IPSTFSKLEAYRNLDLSYNKLNGKIPRQ--  650 (782)
Q Consensus       582 l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~--  650 (782)
                      .+.++.|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+...++|++|+|++|.|++.-...  
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            34688899999987642     344577889999999999998743    4456778999999999999998653333  


Q ss_pred             --hhc--CCCCcEEEcccCcCcccC----CCCc-cccCCCCcccccCCCCCC
Q 044724          651 --LVE--LNAFVVFSFACNNLSGKI----PELT-AQFATFNESSYKGNPFLC  693 (782)
Q Consensus       651 --l~~--l~~L~~L~ls~N~l~~~~----p~~~-~~~~~l~~~~~~gNp~lC  693 (782)
                        +..  .+.|++|++++|+++..-    .... ...+.++.+++.||.+..
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              333  467999999999986521    1111 235678889999998654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.6e-13  Score=115.23  Aligned_cols=102  Identities=25%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             EEEccCccccccCCccccCCCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCChhccCCCCCceEeccCCc
Q 044724          382 WLLLEENHFVGEIPQSLSKCFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIPVEFCQLDWLQILDISDNN  461 (782)
Q Consensus       382 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  461 (782)
                      +|++++|+++. ++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|++++. | .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            45555555542 22 2455555555555555554 3444455555555555555555532 2 35555555555555555


Q ss_pred             ceeeCCCCccccchhhhcCCCCCCEEEcCCCcce
Q 044724          462 ISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLE  495 (782)
Q Consensus       462 l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~  495 (782)
                      ++.. |..      ..+..+++|++|++++|+++
T Consensus        77 i~~~-~~~------~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQS-AAI------QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSS-STT------GGGGGCTTCCEEECTTSGGG
T ss_pred             cCCC-CCc------hhhcCCCCCCEEECCCCcCC
Confidence            5422 110      23444555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.6e-13  Score=129.10  Aligned_cols=128  Identities=23%  Similarity=0.344  Sum_probs=87.4

Q ss_pred             hhhcCCCCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCCCcCCcccccccccccccCCCCCCCCccccccccccc
Q 044724          476 EQINGLSGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLHGLIPPFFYNTALHESYNNNSSLDKPFEISFDFRNTE  555 (782)
Q Consensus       476 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (782)
                      ..+..+++|++|+|++|+++. ++ .+..+++|++|+|++|+++. +|....                            
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~----------------------------   90 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA----------------------------   90 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHH----------------------------
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccc----------------------------
Confidence            345667777777777777763 33 46777788888888887763 332211                            


Q ss_pred             cccccccccEEEEEecCCeeeecchhhcccceeeccCCccCccCCcccccccccceeecccccccccCC-ccccCCCCCC
Q 044724          556 KKVEKKSHEIFEFTTKSNAYTYQGRVLSLLSGIDLSCNKLIGHIPPPIGNLTRIQILNLSHNNLTGTIP-STFSKLEAYR  634 (782)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  634 (782)
                                               .++.|+.|++++|+++..  +.+..+++|+.|++++|+++.... ..++.+++|+
T Consensus        91 -------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  143 (198)
T d1m9la_          91 -------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             -------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             -------------------------cccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccc
Confidence                                     134678888888888743  347778888888888888874322 4578888888


Q ss_pred             EEecCCCccccCCchh----------hhcCCCCcEEE
Q 044724          635 NLDLSYNKLNGKIPRQ----------LVELNAFVVFS  661 (782)
Q Consensus       635 ~LdLs~N~l~~~ip~~----------l~~l~~L~~L~  661 (782)
                      .|++++|++....+..          +..+++|+.||
T Consensus       144 ~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888888876543332          56677777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.3e-12  Score=124.05  Aligned_cols=126  Identities=17%  Similarity=0.226  Sum_probs=60.2

Q ss_pred             CcEEEccCC--cCCccCChhhhhcCCCCcEEEcccCcCcccCCCcccccccccCCCCCCCCEEEccCccccccCCccccC
Q 044724          323 LRLLDVSNN--NFQGCIPVEIGDILPSLSCFNISMNALDGSIPSSFEGHMFSKNFNLTNVRWLLLEENHFVGEIPQSLSK  400 (782)
Q Consensus       323 L~~L~Ls~n--~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~g~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  400 (782)
                      .+.+++++.  .+. .+|..+.. +++|++|++++|.++.. + .+.        .+++|++|++++|.++ .+|..+..
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~--------~l~~L~~L~Ls~N~i~-~i~~~~~~   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLST-LKACKHLALSTNNIEKI-S-SLS--------GMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHH-TTTCCEEECSEEEESCC-C-CHH--------HHTTCCEEECCEEEEC-SCSSHHHH
T ss_pred             cceeeeecccCchh-hhhhHHhc-ccccceeECcccCCCCc-c-ccc--------CCccccChhhcccccc-cccccccc
Confidence            344454433  232 34445554 66666666666666532 2 233        4555666666666554 23332333


Q ss_pred             CCCCcEEECcCCcccccCCccccCcCCCCEEeCCCCccccCCC-hhccCCCCCceEeccCCcce
Q 044724          401 CFLLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKNHLEGPIP-VEFCQLDWLQILDISDNNIS  463 (782)
Q Consensus       401 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  463 (782)
                      +++|++|++++|+++..  ..+..+++|++|++++|+++.... ..+..+++|+.|++++|++.
T Consensus        92 ~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          92 ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            34455555555555432  224445555555555555543211 23444455555555555444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-10  Score=104.01  Aligned_cols=107  Identities=24%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             CCcEEECcCCcccccCCccccCcCCCCEEeCCCC-ccccCCChhccCCCCCceEeccCCcceeeCCCCccccchhhhcCC
Q 044724          403 LLKGLYLNNNNLSGKIPQWLGNLTGLQHIIMPKN-HLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHLLSIEQINGL  481 (782)
Q Consensus       403 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l  481 (782)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...|        ..|..+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~--------~~f~~l   79 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--------DAFHFT   79 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT--------TGGGSC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc--------cccccc
Confidence            3445666665555 34555666667777777554 3666666667777777777777777776555        456677


Q ss_pred             CCCCEEEcCCCcceeecCccccCCCCCCEEEccCCcCC
Q 044724          482 SGLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNNLH  519 (782)
Q Consensus       482 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  519 (782)
                      ++|++|+|++|+++...+..|. ..+|+.|+|++|++.
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          80 PRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccccceeccCCCCcccChhhhc-cccccccccCCCccc
Confidence            7777777777777744444443 346888888888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.3e-08  Score=88.99  Aligned_cols=78  Identities=22%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             ccceeeccCCccCcc--CCcccccccccceeecccccccccCCccccCCCCCCEEecCCCccccCCch-------hhhcC
Q 044724          584 LLSGIDLSCNKLIGH--IPPPIGNLTRIQILNLSHNNLTGTIPSTFSKLEAYRNLDLSYNKLNGKIPR-------QLVEL  654 (782)
Q Consensus       584 ~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~-------~l~~l  654 (782)
                      .|++|||++|+|+..  ++..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|.+++....       .+..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            445555555555432  123345566666666666666643332333444566666666666654332       24556


Q ss_pred             CCCcEEE
Q 044724          655 NAFVVFS  661 (782)
Q Consensus       655 ~~L~~L~  661 (782)
                      ++|++||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            6776664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5e-08  Score=88.52  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=18.9

Q ss_pred             CcCCCCEEeCCCCccccCC--ChhccCCCCCceEeccCCcce
Q 044724          424 NLTGLQHIIMPKNHLEGPI--PVEFCQLDWLQILDISDNNIS  463 (782)
Q Consensus       424 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~  463 (782)
                      .+++|++|++++|+|+...  +..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3444555555555544321  223444555555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=8.4e-06  Score=73.74  Aligned_cols=66  Identities=9%  Similarity=0.033  Sum_probs=32.5

Q ss_pred             CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEcCCCcceee-------cCccccCCCCCCEEEccCCc
Q 044724          448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLILAHNNLEGE-------VPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       448 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      ..+.|++|++++|.++......+.    ..+...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~----~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcccccceeeehhhcchHHHHHHH----HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            345555555555555432111110    3344556666666666644321       23334455677777776553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=7.3e-05  Score=67.28  Aligned_cols=93  Identities=10%  Similarity=0.140  Sum_probs=44.2

Q ss_pred             cCCCCCCEEeCCCC-CCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc----chhhcCCCCCCCEEEccCCcCcCcCC
Q 044724           93 TPFQQLESLSLSAN-NIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS----ILSSLTRLSSVRSLKLSYNRLEGSID  167 (782)
Q Consensus        93 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ip  167 (782)
                      .+.+.|++|+|+++ .+....-.  ....++...++|++|+|++|.++..    +...+...+.|++|+|++|.+...--
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~--~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIR--SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHH--HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHH--HHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            34566777777653 34211000  0011255556666666666666532    22333445566666666666542100


Q ss_pred             ---hhhhcCCCCCCEEEcccCCC
Q 044724          168 ---VKEFDSFNNLEVLDMKRNEI  187 (782)
Q Consensus       168 ---~~~~~~l~~L~~L~Ls~n~l  187 (782)
                         ...+...+.|++|++++|.+
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHHHhCCcCCEEECCCCcC
Confidence               01234445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.97  E-value=0.00029  Score=63.16  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             cCCCCCCEEeCCC-CCCCCccCCCCcccccccCCCCCcEEeCCCCCCCCc----chhhcCCCCCCCEEEccCCcCc
Q 044724           93 TPFQQLESLSLSA-NNIAGCVENEGASSREVTRLNNLKMFDLSGNSFNNS----ILSSLTRLSSVRSLKLSYNRLE  163 (782)
Q Consensus        93 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  163 (782)
                      .+.+.|++|+|++ +.++...-.  ....++...++|++|+|++|.++..    +-..+...+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~--~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHH--HHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3456666666665 334211100  0111244555666666666655442    1223334455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=7.7e-05  Score=67.09  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=32.1

Q ss_pred             CCCCCceEeccCCcceeeCCCCccccchhhhcCCCCCCEEEc--CCCccee----ecCccccCCCCCCEEEccCCc
Q 044724          448 QLDWLQILDISDNNISGSLPSCFHLLSIEQINGLSGLSHLIL--AHNNLEG----EVPVQLCGLNQLQLLDLSDNN  517 (782)
Q Consensus       448 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~l~~L~~L~L--~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~  517 (782)
                      ..++++.+++++|.++...-..+.    ..+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+.
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~----~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALV----EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHH----HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHH----HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            345555555555555432111111    33445566665444  3444432    223344566777777776554