Citrus Sinensis ID: 044730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccEEEEEEEccccccEEEHHHEHHcccEEEEEEEEEccccccEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHcHHHEHEEccccccEEEEEccEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGIPCDDIVLVqlgstptepsvvtvncpdknglgcdLCRIILEFGLFIvrgdfstdgrwCYIVLWvvpdassdkvdWESLKNRLLSVCPSILVSYyfnqpssnsskpslylLKYCCVDRKGLLHDATKVLTELEFTIQRVKvmttpdgrvlDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCeiqlagpeyeslqaftslppavaeelfgselpdkedfSRVLSTEVtqnkasitvdnllspahtllQIKCADQKGLFYDILRTSKDLNIQIAYGrisssvkgyrnmdlfirqtdgkkvvdpkqqTALCFHLKEEMLHPLRVmvtnrgpdtellvanpvelcgkgrprvfYDVTLALKALGICIFsaeigrhstshRQWEVYRFLLDeslefplassQARNRIVEKVKKTLMGW
Flexible Loop (DISEMBL)
MGIPCDDIVLVQlgstptepsvvTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNqpssnsskpSLYLLKYCCVDRKGLLHDATKVLTEleftiqrvkvmttpdgrVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTevtqnkasitvdNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAygrisssvkgyrNMDLFIrqtdgkkvvdPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSaeigrhstshRQWEVYRFLLDESLefplassqarnrIVEKVKKTLMGW
Low Complexity Region (SEG)
MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Disordered region (IsUnstruct)
****CDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFN*********SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELF************VL*TEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL********************
Disordered Region (DISOPRED)
*GIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLL***********************LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKED*SRV****VTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML******************ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Disordered Region (DISEMBL)
MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Disordered Region (DISPRO)
*GIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELP***************NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.386	0.170	0.242	8e-05
B9JZI2	941	[Protein-PII] uridylyltra	yes	no	0.357	0.159	0.252	0.0001
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.305	0.137	0.258	0.0005

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 40/202 (19%)

Query: 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDG----LELLHTKQ 167
           L   C D  GL       L     +I   ++ T  DG  LD F++ DG     E  H   
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817

Query: 168 RREETCEHMIAVLGEYSISCEIQLAGPEYESLQAFT-SLPPAVAEELFGSELPDKEDFSR 226
           R     E   A+ G   I   I+ A     S +     +PP V                 
Sbjct: 818 RLNHLVEQ--ALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRV----------------- 858

Query: 227 VLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSV 286
                         +DN  S  HT++++   D+ GL +D+       ++QI+   I++  
Sbjct: 859 -------------VIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITT-- 903

Query: 287 KGYRNMDLF-IRQTDGKKVVDP 307
            G R +D+F +R   G K+ DP
Sbjct: 904 YGMRAVDVFYVRDLLGMKITDP 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Gluconobacter oxydans (strain 621H) (taxid: 290633)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glnD PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)

Query: 141 KVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGPEYESLQ 200
           ++ TT DGR LD   I     +   + RR  T   MI          E  LAG +     
Sbjct: 759 QIFTTSDGRALDTILINREFPIDEDEMRRANTISKMI----------EDVLAGKK----- 803

Query: 201 AFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQK 260
               LP  +A    G +             +    K  +T+ N LS   T+++I+C D+ 
Sbjct: 804 ---RLPEVIATRTKGRK-----------RNKTFTVKPHVTISNSLSNKFTVIEIECLDRI 849

Query: 261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPKQQTALCFHLKE 319
           GL  ++     DL++ I   RI++   G + +D F +    G+K+ +  +Q ++   LK 
Sbjct: 850 GLLAEVTAVLADLSLDIHSARITTF--GEKVIDTFYVIDLVGQKITNENRQGSISVRLKA 907

Query: 320 EM 321
            M
Sbjct: 908 VM 909

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 192 AGPEYESLQAFTSLPPAVAEELFGSELP----DKEDFSRVLSTEVTQNKASITVDNLLSP 247
            G  +ES      L   + + L G   P     K        T V      + +DN  S 
Sbjct: 796 GGGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVPPRVLIDNNAST 855

Query: 248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVD 306
            HT++++   D+ GL YD+ R   +L +QI+  +IS+   G + +D+F ++   G KV  
Sbjct: 856 THTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTY--GEKAIDVFYVKDVFGLKVTH 913

Query: 307 PKQQTALCFHLKEEMLHPL 325
             +       ++E +LH L
Sbjct: 914 ENK----LAQIRERLLHAL 928

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
224100951	421	predicted protein [Populus trichocarpa]	1.0	0.995	0.717	1e-178
224109552	423	predicted protein [Populus trichocarpa]	1.0	0.990	0.709	1e-176
255575072	420	amino acid binding protein, putative [Ri	1.0	0.997	0.707	1e-176
297823847	411	ACT domain-containing protein [Arabidops	0.980	1.0	0.713	1e-175
18405098	411	ACT domain-containing protein [Arabidops	0.980	1.0	0.718	1e-175
225449577	412	PREDICTED: uncharacterized protein LOC10	0.983	1.0	0.713	1e-175
15010738	411	At2g39570/F12L6.23 [Arabidopsis thaliana	0.980	1.0	0.715	1e-174
225435020	420	PREDICTED: uncharacterized protein LOC10	0.988	0.985	0.669	1e-164
363807308	419	uncharacterized protein LOC100787003 [Gl	1.0	1.0	0.665	1e-163
224054817	417	predicted protein [Populus trichocarpa]	0.992	0.997	0.654	1e-162

>gi|224100951|ref|XP_002312081.1| predicted protein [Populus trichocarpa] gi|222851901|gb|EEE89448.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/421 (71%), Positives = 352/421 (83%), Gaps = 2/421 (0%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGIP DD+VL+Q GS   +P+VVTVNCPDK+GLGCDLCRIILEFGL I R DF TDG+WC
Sbjct: 1   MGIPADDVVLIQQGSGSNDPTVVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQP-SSNSSKPSLYLLKYCCVDR 119
           YIV WVV  ++S ++DW+SLKNRLL V P  L   Y++   + +++ PS+YLLK+CCVDR
Sbjct: 61  YIVFWVVQRSNSLRLDWDSLKNRLLIVSPPCLAPLYYDHKLNGSTAAPSVYLLKFCCVDR 120

Query: 120 KGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179
           KGLLHD T+VLTELEFTIQR+KVMTTPD +V+DLFFITDG ELLHTK+RR+ TC ++  V
Sbjct: 121 KGLLHDITEVLTELEFTIQRLKVMTTPDEKVVDLFFITDGRELLHTKERRDNTCGYLCDV 180

Query: 180 LGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ-NKAS 238
             EY ISCE+QLAGPE E+ + F+SLP AVAEELF  EL +KE  ++ L T  T   KA 
Sbjct: 181 FKEYCISCELQLAGPECENQRTFSSLPMAVAEELFSCELSEKESCTQALGTATTPPKKAI 240

Query: 239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ 298
           +TVDNLLSPAHTLLQI+C DQKGLFYDILRTSKDLNIQ+AYGR SSS+KGY NMDL IRQ
Sbjct: 241 VTVDNLLSPAHTLLQIQCVDQKGLFYDILRTSKDLNIQVAYGRFSSSIKGYHNMDLLIRQ 300

Query: 299 TDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDV 358
           TDGKK+VDP+     C  LKEEMLHPLRV++TNRGPDTELLVANPVELCGKGRPRVFYDV
Sbjct: 301 TDGKKIVDPELLANTCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFYDV 360

Query: 359 TLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG 418
           TL LK LGICIFSAEIGRHST  RQWEVYRFLLDE+ + PLASSQARN+IV+++++TLMG
Sbjct: 361 TLTLKKLGICIFSAEIGRHSTQDRQWEVYRFLLDENCDVPLASSQARNQIVDRIRRTLMG 420

Query: 419 W 419
           W
Sbjct: 421 W 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109552|ref|XP_002315234.1| predicted protein [Populus trichocarpa] gi|222864274|gb|EEF01405.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/423 (70%), Positives = 352/423 (83%), Gaps = 4/423 (0%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGIP DD+VL+Q G++P +P++VTVNCPDK+GLGCDLCRIILEFGL I R DF TDG+WC
Sbjct: 1   MGIPADDVVLIQQGNSPHDPTIVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWC 60

Query: 61  YIVLWVVPDASSD--KVDWESLKNRLLSVCPSILVSYYFNQP-SSNSSKPSLYLLKYCCV 117
           YIVLWVV    S+  ++DW+SLKNRLL V P  L   Y++Q  + +S+ PS+YLLK+CCV
Sbjct: 61  YIVLWVVQLQHSNLLRLDWDSLKNRLLRVSPPCLTPLYYDQKLNGSSAAPSVYLLKFCCV 120

Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI 177
           DRKGLLHD T+VLTELEFTIQR+KVMTTPDG+V+DLFFITDG ELLHTK+RR++TC ++ 
Sbjct: 121 DRKGLLHDVTEVLTELEFTIQRLKVMTTPDGKVVDLFFITDGRELLHTKKRRDDTCRYLY 180

Query: 178 AVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ-NK 236
            V  EY I CE+QLAGPE ++ +  +SLP  VAEELF  EL +KE   + L T  T   K
Sbjct: 181 DVFREYCIGCELQLAGPECDTQRNLSSLPLVVAEELFSCELSEKESCMQALRTATTSPKK 240

Query: 237 ASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFI 296
           A +TVDNLLSPAHTLLQI+C DQKGLFYDILR SKDLNIQ+AYGR SSS+KGYRNMDLF+
Sbjct: 241 AIVTVDNLLSPAHTLLQIQCVDQKGLFYDILRISKDLNIQVAYGRFSSSIKGYRNMDLFV 300

Query: 297 RQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFY 356
           +QTDGKK++DPK    LC  LKEEMLHPLRV++TNRGPDTELLVANPVELCGKGRPRVFY
Sbjct: 301 QQTDGKKILDPKLLDNLCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFY 360

Query: 357 DVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL 416
           DVTLALK LGICIFSAEIGRHST  RQWEVYRFLL E+ EFPLAS QARN++   +++TL
Sbjct: 361 DVTLALKKLGICIFSAEIGRHSTQDRQWEVYRFLLVENGEFPLASGQARNQMAAGIRRTL 420

Query: 417 MGW 419
           MGW
Sbjct: 421 MGW 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575072|ref|XP_002528441.1| amino acid binding protein, putative [Ricinus communis] gi|223532117|gb|EEF33924.1| amino acid binding protein, putative [Ricinus communis]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/420 (70%), Positives = 350/420 (83%), Gaps = 1/420 (0%)

Query: 1   MGIPC-DDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRW 59
           MG+P  DD+VL++      +P+VVTVNCPD+ GLGCDLCRIILEFGL I R DFSTDGRW
Sbjct: 1   MGMPSSDDVVLIEPAKNSGDPTVVTVNCPDQAGLGCDLCRIILEFGLSISRADFSTDGRW 60

Query: 60  CYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDR 119
           CYIV WVVP ++S KV+W+SLKNRL    P  L  +YF+Q S+ +S PSLYLLK+C VDR
Sbjct: 61  CYIVFWVVPHSTSHKVNWDSLKNRLSCASPPCLGPFYFDQKSNVTSVPSLYLLKFCFVDR 120

Query: 120 KGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV 179
           KGLLHD  K+LTELEFTIQRVKVMTTPDG+V+DLFFITDGL+LLHT++RR +TC H+ +V
Sbjct: 121 KGLLHDVAKILTELEFTIQRVKVMTTPDGKVVDLFFITDGLDLLHTEKRRSDTCRHLASV 180

Query: 180 LGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASI 239
             E  ISCE+QLAGPEYESLQAF+SLP  +AEELF  E  +++  S+ L T+   +KA++
Sbjct: 181 FKECCISCELQLAGPEYESLQAFSSLPLPIAEELFSCEQLEEKTCSQALCTDTIADKATV 240

Query: 240 TVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQT 299
           TVDN +SPAHTLLQ+KC DQKGLFYDILRTSKD NI++AYGR SSS+KGYRNMDLFI+QT
Sbjct: 241 TVDNNMSPAHTLLQLKCIDQKGLFYDILRTSKDCNIRVAYGRFSSSLKGYRNMDLFIQQT 300

Query: 300 DGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVT 359
           DGKK++DPK Q  LC  LK EML P RV++ NRGPDTELLVANPVEL GKGRPRVFYDVT
Sbjct: 301 DGKKIMDPKHQLMLCSRLKAEMLRPFRVIIANRGPDTELLVANPVELSGKGRPRVFYDVT 360

Query: 360 LALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
           LALK LGICIFSAEI RHST  +QWEVYRFLL+E+ E PLAS+QAR +IV++VKKTLMGW
Sbjct: 361 LALKTLGICIFSAEIARHSTQDQQWEVYRFLLNENCEVPLASAQARKQIVDRVKKTLMGW 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823847|ref|XP_002879806.1| ACT domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325645|gb|EFH56065.1| ACT domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 347/419 (82%), Gaps = 8/419 (1%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGI  DD VL++ G    +P++VTVNCPD++GLG  LCRIILEFGL I R DFSTDGRWC
Sbjct: 1   MGILNDDAVLIEPGKISGDPTIVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIV WV PD SS ++DW+SLKNRLLS CPS L S+YF   S+ S  PSLYLLK+ C DRK
Sbjct: 61  YIVFWVTPDISSPRIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRK 120

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD TKVLTELEFTIQRVKVMTTPDGRVLD+FFITD ++LLHTKQR+ +TC+H+ AVL
Sbjct: 121 GLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVL 180

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
           GE+ +SCE++LAGPE ES+Q F+SLPP  A+ELFG   PD  D     ++  + NKA +T
Sbjct: 181 GEHGVSCELELAGPELESVQRFSSLPPVAADELFG---PDGFD-----NSGSSSNKAVLT 232

Query: 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
           VDN LSPAHT+LQI+C DQKGLFYDILRTSKD ++ IAYGR SS VKGYRN++LF+R TD
Sbjct: 233 VDNQLSPAHTVLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTD 292

Query: 301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
           GKK+VDPK Q   C  LKEEM+ PLRV++ NRGPDTELLVANPVEL GKGRPRVFYDVTL
Sbjct: 293 GKKIVDPKHQANFCARLKEEMMCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTL 352

Query: 361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
           ALK+LGICIFSAEIGRHST  RQWEVYRFLLDES EFPLAS +ARN++V++V KTLMGW
Sbjct: 353 ALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405098|ref|NP_565908.1| ACT domain-containing protein [Arabidopsis thaliana] gi|3355486|gb|AAC27848.1| expressed protein [Arabidopsis thaliana] gi|330254601|gb|AEC09695.1| ACT domain-containing protein [Arabidopsis thaliana] gi|347949474|gb|AEP31950.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 345/419 (82%), Gaps = 8/419 (1%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGI  DD VL++ G    +P+VVTVNCPD++GLG  LCRIILEFGL I R DFSTDGRWC
Sbjct: 1   MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIV WV PD SS K+DW+SLKNRLLS CPS L S+YF   S+ S  PSLYLLK+ C DRK
Sbjct: 61  YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRK 120

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD TKVLTELEFTIQRVKVMTTPDGRVLD+FFITD ++LLHTKQR+ +TC+H+ AVL
Sbjct: 121 GLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVL 180

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
           GE+ +SCE++LAGPE ES+Q F+SLPP  A+ELFG   PD  D S       + NKA +T
Sbjct: 181 GEHGVSCELELAGPELESVQRFSSLPPLAADELFG---PDGFDIS-----GSSSNKAVLT 232

Query: 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
           VDN LSPAHTLLQI+C DQKGLFYDILRTSKD ++ IAYGR SS VKGYRN++LF+R TD
Sbjct: 233 VDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTD 292

Query: 301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
           G K++DPK Q   C  LKEEM+ PLRV++ NRGPDTELLVANPVEL GKGRPRVFYDVTL
Sbjct: 293 GNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTL 352

Query: 361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
           ALK+LGICIFSAEIGRHST  RQWEVYRFLLDES EFPLAS +ARN++V++V KTLMGW
Sbjct: 353 ALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449577|ref|XP_002283917.1| PREDICTED: uncharacterized protein LOC100256399 [Vitis vinifera] gi|296086260|emb|CBI31701.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 345/419 (82%), Gaps = 7/419 (1%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGI CDD VL+Q G+ P EP  +T+NCPDK GLGCDLCRIILEFGL I RGDFSTDGRWC
Sbjct: 1   MGIFCDDAVLIQKGNKPGEPCSITINCPDKAGLGCDLCRIILEFGLCIARGDFSTDGRWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIV   VP  SS K+DWESLKNRLLS CPS L SY FNQ   +S  P +Y+LK  C+DR 
Sbjct: 61  YIVFSFVPCPSSLKIDWESLKNRLLSACPSPLFSYCFNQQYGSSPSP-VYMLKLFCLDRN 119

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD TKVL+ELEFTI+RVKVMTTPDGRVLDLFFITDG+ELLHTK+R+++TC  ++AVL
Sbjct: 120 GLLHDVTKVLSELEFTIERVKVMTTPDGRVLDLFFITDGMELLHTKKRQDDTCARLLAVL 179

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
           GE+++ CEIQLAGPEY S Q  +SL P +AEELFGSEL D +      S        +IT
Sbjct: 180 GEFNVICEIQLAGPEYRSQQGCSSLSPEIAEELFGSELLDNK------SNMTKLENGTIT 233

Query: 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
           VDN LSPAHTLLQI+C DQKGLFYDI+RTSKD NIQIAYGR + SVKGYRNMDLFI++TD
Sbjct: 234 VDNFLSPAHTLLQIQCLDQKGLFYDIMRTSKDCNIQIAYGRFNPSVKGYRNMDLFIQKTD 293

Query: 301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
           GKK++DP+ Q +LC  LKEEMLHPLRV +TNRGPD ELLVANPVEL GKGRPRVFYDVT 
Sbjct: 294 GKKIIDPEYQASLCSRLKEEMLHPLRVTITNRGPDAELLVANPVELSGKGRPRVFYDVTC 353

Query: 361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
            LK LGICIFS EI RHSTS+R+WEVYRF L+ES+EFPL SS++R++IV++VK+TLMGW
Sbjct: 354 TLKTLGICIFSGEIVRHSTSNREWEVYRFRLEESVEFPLTSSRSRSQIVDRVKRTLMGW 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15010738|gb|AAK74028.1| At2g39570/F12L6.23 [Arabidopsis thaliana] gi|23308377|gb|AAN18158.1| At2g39570/F12L6.23 [Arabidopsis thaliana]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/419 (71%), Positives = 344/419 (82%), Gaps = 8/419 (1%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGI  DD VL++ G    +P+VVTVNCPD++GLG  LCRIILEFGL I R DFSTDGRWC
Sbjct: 1   MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIV WV PD SS K+DW+SLKNRLLS CPS L S+YF   S+ S  PSLYLLK+ C DRK
Sbjct: 61  YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRK 120

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD TKVLTELEFTIQRVKVMTTPDGRVLD+FFITD ++LLHTKQR+ +TC+H+ AVL
Sbjct: 121 GLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVL 180

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
           GE+ +SCE++LAGPE ES+Q F+SLPP  A+ELFG   PD  D S       + NKA +T
Sbjct: 181 GEHGVSCELELAGPELESVQRFSSLPPLAADELFG---PDGFDIS-----GSSSNKAVLT 232

Query: 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
           VDN LSPAHTLLQI+C DQKGLFYDILRTSKD ++ IAYGR SS VKGYRN++LF+R TD
Sbjct: 233 VDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTD 292

Query: 301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
             K++DPK Q   C  LKEEM+ PLRV++ NRGPDTELLVANPVEL GKGRPRVFYDVTL
Sbjct: 293 ENKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTL 352

Query: 361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
           ALK+LGICIFSAEIGRHST  RQWEVYRFLLDES EFPLAS +ARN++V++V KTLMGW
Sbjct: 353 ALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435020|ref|XP_002284171.1| PREDICTED: uncharacterized protein LOC100262189 [Vitis vinifera] gi|297746113|emb|CBI16169.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/415 (66%), Positives = 339/415 (81%), Gaps = 1/415 (0%)

Query: 6   DDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLW 65
           DD+VL+Q G+   EP V+TVNCPDK GLGCD+CR IL FGL+I +GD STDG WCYIVLW
Sbjct: 6   DDVVLIQKGTKLGEPCVITVNCPDKTGLGCDICRTILNFGLYITKGDISTDGIWCYIVLW 65

Query: 66  VVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHD 125
           V+P +SS  + W +LK+RL+S+CP   VSY FNQ S  ++   +YLLK+ C+DRKGLLHD
Sbjct: 66  VIPHSSSHIIRWSNLKDRLISICPPCSVSYCFNQQSDCTAPSPVYLLKFFCLDRKGLLHD 125

Query: 126 ATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSI 185
            T+VL+ELE TIQRVKV TTPDGRVLDLFFITD +ELLHTK+R+++T E + AVLGE  I
Sbjct: 126 VTQVLSELELTIQRVKVTTTPDGRVLDLFFITDNMELLHTKKRQDDTLEQLYAVLGESCI 185

Query: 186 SCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVT-QNKASITVDNL 244
           SCE+QLAGPEYE+ Q  +SL P +AEELF  EL DKE  S+ LS ++T   KAS+ VDN 
Sbjct: 186 SCELQLAGPEYENHQCVSSLSPGIAEELFRCELSDKESHSQALSPDMTILKKASVIVDNS 245

Query: 245 LSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKV 304
           LSPAHTLLQI C D KGL YDILRT KD NI+I+YGR+S + KGYR++DLFI+Q DGKK+
Sbjct: 246 LSPAHTLLQIYCVDHKGLVYDILRTLKDCNIKISYGRLSQNTKGYRDLDLFIQQKDGKKI 305

Query: 305 VDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKA 364
           VDP++Q+ALC  LK EMLHPLRV+++NRGPDTELLVANPVEL GKGRPRVF+D TLALK 
Sbjct: 306 VDPEKQSALCSRLKVEMLHPLRVVISNRGPDTELLVANPVELSGKGRPRVFFDATLALKM 365

Query: 365 LGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
           LGICIFSAEIGRHSTS R+WEVY+FLL+E+ EF L +   RN+IV+++++ LMGW
Sbjct: 366 LGICIFSAEIGRHSTSDREWEVYKFLLEENCEFQLLNMVGRNQIVDRLRRILMGW 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807308|ref|NP_001242111.1| uncharacterized protein LOC100787003 [Glycine max] gi|255636202|gb|ACU18442.1| unknown [Glycine max]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/419 (66%), Positives = 329/419 (78%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           MGIP DD+V++Q G    EP +VTVNCPDK GLGCDLCRIILEFGL I R D STDGRWC
Sbjct: 1   MGIPWDDVVVIQQGKDHNEPCIVTVNCPDKAGLGCDLCRIILEFGLRITRADISTDGRWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIV WV+   +S  VDWESLK RLLS CPS L+SY+FNQ S++ S P +YL K  CVD+K
Sbjct: 61  YIVYWVLAHPASLNVDWESLKTRLLSACPSCLLSYHFNQHSTSPSPPPIYLSKVWCVDQK 120

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD  ++L  LE  IQRVK M TPDGRVLD+FFITDG+ELLHTK+R++  CE+++  L
Sbjct: 121 GLLHDINEILCNLELIIQRVKAMPTPDGRVLDMFFITDGMELLHTKKRQDYVCEYLMDAL 180

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
           GE  IS E+QLAGPEY  LQ F+SLPPA AEELF SEL DK     +     T    ++T
Sbjct: 181 GERCISSELQLAGPEYGHLQGFSSLPPAFAEELFSSELLDKLSLHPLSQDMTTLKTPTVT 240

Query: 241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
           VDN LSP HTLLQI+C DQKGL YDI+R SKD +I++A+GR SSSVKG+RN+DLF++  D
Sbjct: 241 VDNSLSPVHTLLQIQCVDQKGLCYDIMRISKDSDIKVAFGRFSSSVKGFRNIDLFVQHND 300

Query: 301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
           GKK++DP+ Q  LC  LKEEMLHPLRV + NRGPDTELLVANPVEL GKGRPRVFYDVTL
Sbjct: 301 GKKIIDPESQKTLCSCLKEEMLHPLRVTIVNRGPDTELLVANPVELSGKGRPRVFYDVTL 360

Query: 361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
            LKAL + IFSAE+ RHST  RQWEV+RFLL+ES +FPL  SQAR +IV+KV++TLMGW
Sbjct: 361 TLKALRVGIFSAEVVRHSTQERQWEVHRFLLEESRDFPLTRSQARTQIVDKVRRTLMGW 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054817|ref|XP_002298369.1| predicted protein [Populus trichocarpa] gi|222845627|gb|EEE83174.1| predicted protein [Populus trichocarpa]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/420 (65%), Positives = 336/420 (80%), Gaps = 4/420 (0%)

Query: 1   MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
           M +P DD VL++ G    +P V+TVNCPDK GL CD+  +IL++GL+I +GD STDG+WC
Sbjct: 1   MEVPSDDAVLIEKGKKAGDPHVITVNCPDKTGLACDIFHVILDYGLYITKGDVSTDGKWC 60

Query: 61  YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
           YIVLWVVP + S  + W  LKNRLLSVCPS  VS+Y+NQ  S S    +YLLK+  +DRK
Sbjct: 61  YIVLWVVPHSRS-IIRWTHLKNRLLSVCPSCSVSFYWNQQQSKSC--PVYLLKFFSLDRK 117

Query: 121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
           GLLHD  +VL ELE TIQRVKV TTPDGRVLDLFF+TD LELLHTKQR++ETCE + AVL
Sbjct: 118 GLLHDVNQVLCELELTIQRVKVTTTPDGRVLDLFFVTDKLELLHTKQRQDETCEQLHAVL 177

Query: 181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ-NKASI 239
           GE  ISCE++LAGPEYE LQ  +SL P +A+ELF  E+ DKE  SR LS ++ +  +  +
Sbjct: 178 GESCISCELRLAGPEYECLQGMSSLSPVIADELFHCEISDKEIHSRALSPDMMKLKRTDV 237

Query: 240 TVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQT 299
            +DN LSPAHTLLQ+ C D KGL YD++RT KD NIQIAYGR S    G+R++DLFI+Q 
Sbjct: 238 MIDNSLSPAHTLLQVHCVDHKGLLYDVMRTLKDCNIQIAYGRFSLVTNGHRDLDLFIQQK 297

Query: 300 DGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVT 359
           DGKK+VDP++Q+ALCF LK EMLHPLRV++ NRGPDTELLVANPVEL GKGRPRVFYD+T
Sbjct: 298 DGKKIVDPEKQSALCFRLKVEMLHPLRVVIANRGPDTELLVANPVELSGKGRPRVFYDIT 357

Query: 360 LALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
            ALKALGICIFSAEIGR+STS R+WE+YRFLL+E+ EF L++  ARN+IV+KV++TLMGW
Sbjct: 358 HALKALGICIFSAEIGRYSTSDREWEIYRFLLEENCEFQLSNMMARNQIVDKVRRTLMGW 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.980	1.0	0.720	9.3e-162
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.961	0.982	0.503	3.6e-105
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.336	0.314	0.264	1.8e-09
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.715	0.680	0.213	6.6e-09
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.804	0.743	0.218	9e-08
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.782	0.757	0.207	1.8e-07
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.288	0.265	0.248	8.4e-07
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.420	0.386	0.248	0.00025
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.324	0.272	0.217	0.00014

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
 Identities = 302/419 (72%), Positives = 345/419 (82%)

Query:     1 MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
             MGI  DD VL++ G    +P+VVTVNCPD++GLG  LCRIILEFGL I R DFSTDGRWC
Sbjct:     1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query:    61 YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRK 120
             YIV WV PD SS K+DW+SLKNRLLS CPS L S+YF   S+ S  PSLYLLK+ C DRK
Sbjct:    61 YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRK 120

Query:   121 GLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL 180
             GLLHD TKVLTELEFTIQRVKVMTTPDGRVLD+FFITD ++LLHTKQR+ +TC+H+ AVL
Sbjct:   121 GLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLTAVL 180

Query:   181 GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASIT 240
             GE+ +SCE++LAGPE ES+Q F+SLPP  A+ELFG   PD  D S   S     NKA +T
Sbjct:   181 GEHGVSCELELAGPELESVQRFSSLPPLAADELFG---PDGFDISGSSS-----NKAVLT 232

Query:   241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTD 300
             VDN LSPAHTLLQI+C DQKGLFYDILRTSKD ++ IAYGR SS VKGYRN++LF+R TD
Sbjct:   233 VDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTD 292

Query:   301 GKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTL 360
             G K++DPK Q   C  LKEEM+ PLRV++ NRGPDTELLVANPVEL GKGRPRVFYDVTL
Sbjct:   293 GNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTL 352

Query:   361 ALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW 419
             ALK+LGICIFSAEIGRHST  RQWEVYRFLLDES EFPLAS +ARN++V++V KTLMGW
Sbjct:   353 ALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 214/425 (50%), Positives = 278/425 (65%)

Query:     1 MGIPCDDIVLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWC 60
             MGI  DD+V++       +PSV+T+NCPDK GLGCDLCRI+L FGL IVRGD STDG+WC
Sbjct:     1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWC 60

Query:    61 YIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSY-----YFNQPSSNSSK-PSLYLLKY 114
             Y+V WV+         W  LK RL+   PS   ++     Y +   S   K P L+LLK 
Sbjct:    61 YLVFWVI---GKPNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKL 117

Query:   115 CCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCE 174
              C DR GLL+D T+VL +LE  I++VK+ TTPDG+V+DLFF+TD  ELL T +RR E  E
Sbjct:   118 ACSDRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVKRRNEVYE 177

Query:   175 HMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ 234
             ++   +G+  IS +I+L GPE  +    +S    VAE LF S++  +       S   T 
Sbjct:   178 YLRDAIGDSMISYDIELVGPEITACSTSSS----VAETLFSSDVSGEHS-----SGLHTS 228

Query:   235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDL 294
             +  SI VDN LS AHTL+ I C D KGL YDI+RT KD NIQI+YGR +  +     +DL
Sbjct:   229 SNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDL 288

Query:   295 FIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRV 354
             FI Q+DG+K++D  +  AL   L+ E+  PLRV++ NRGPDTELLV NPVEL GKGRP+V
Sbjct:   289 FIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQV 348

Query:   355 FYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK 414
             F+D+ LALK +  CIFSAEIGRH T  R+WEVY+ L++E    P+     R++I E+V K
Sbjct:   349 FHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIP----RSKIEEEVWK 404

Query:   415 TLMGW 419
             TLMGW
Sbjct:   405 TLMGW 409

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query:     9 VLVQLGSTPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVP 68
             V++  G  P   +VV ++     G+  +  +++ +  L+I +   S+DG+W   V  V  
Sbjct:    22 VVIDNGVCPNS-TVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHV-S 79

Query:    69 DASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATK 128
             D + DK+  E+L   +  +  SI  S+Y            L  L+    DR GLL +   
Sbjct:    80 DLNGDKLTDENL---IRYIEKSIETSHY----CKTEGYTGLTALELTGTDRVGLLSEVFA 132

Query:   129 VLTELEFTIQRVKVMTTPDGRVLDLFFITDG 159
             VL +LE  +   K  T  +GR+  + ++ DG
Sbjct:   133 VLADLECDVVEAKAWTH-NGRIASMIYVKDG 162

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 70/328 (21%), Positives = 143/328 (43%)

Query:    21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESL 80
             ++V V+   +NG+  +  +I+ +  L I +   S+DG W   V  V  D + +K++ +S+
Sbjct:    33 TIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT-DLNGNKLNDQSV 91

Query:    81 KNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRV 140
                L  +  SI   YY      N     L  L+    DR GLL +   VL++L   +   
Sbjct:    92 ---LRYIEQSIETVYY----GENIEVNGLTALELTGTDRIGLLSEMFAVLSDLNCDVVDA 144

Query:   141 KVMTTPDGRVLDLFFITD---GLELL--HTKQRREETCEHMIAVLGEYSISCEIQLAGPE 195
             K+ T  +GRV  + ++ D   G  +L  H   + E   ++++   G+  ++     A   
Sbjct:   145 KLWTH-NGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLN--GDNDVNS----AAKT 197

Query:   196 YESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIK 255
               ++ +   +   + + +F     +  D+ R            +TV N     ++++ + 
Sbjct:   198 CVTVDSMMHIERRLHQLMF-----EDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVH 252

Query:   256 CADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDP--KQQTAL 313
             C D+  L +D++ T  D+   + +  I+++ +   +++ +IR  DG  +     +Q+   
Sbjct:   253 CRDRTKLLFDVVCTLTDMEYAVFHATINTA-EDQAHLEFYIRHKDGSPISSEAERQRVIQ 311

Query:   314 CFHLKEEMLHPLRVMVTNRGPDTELLVA 341
             C     E      V +  R PD + L+A
Sbjct:   312 CLEAAVERRALEGVRLELRHPDKQGLLA 339

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 79/361 (21%), Positives = 151/361 (41%)

Query:    19 EPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWE 78
             E ++V V+  +K G+  ++ +++ +  L I +   S+DG W ++ ++ V D   +KV   
Sbjct:    34 ECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGW-FMDVFHVTDQQGNKVTDS 92

Query:    79 SLKNRLLSVC-PSILVSYYFNQ-PSSNSSKPSL---YLLKYCCVDRKGLLHDATKVLTEL 133
                + +  V  P    S   N  P       SL     ++    DR GLL + + VL +L
Sbjct:    93 KTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHTSIEIIARDRPGLLSEVSAVLADL 152

Query:   134 EFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAG 193
                +   +  T  + R+  + ++ D            E    M   L      CE Q   
Sbjct:   153 NINVVAAEAWTH-NRRIACVLYVNDNATSRAVDD--PERLSSMEEQLNNVLRGCEEQDEK 209

Query:   194 PEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQ 253
                 SL   ++       ++F ++  D E  +++  +     +  ITV++     ++++ 
Sbjct:   210 FARTSLSIGSTHVDRRLHQMFFADR-DYEAVTKLDDSASCGFEPKITVEHCEEKGYSVIN 268

Query:   254 IKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTAL 313
             + C D+  L +DI+ T  D+   + +  ISSS   + + + FIR  DG   +D + +   
Sbjct:   269 VSCEDRPKLMFDIVCTLTDMQYIVFHATISSS-GSHASQEYFIRHKDGC-TLDTEGE--- 323

Query:   314 CFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE 373
                 KE ++  L   +  R  +   L     ELC K R  +  +VT  L+  G+ +  A 
Sbjct:   324 ----KERVVKCLEAAIHRRVSEGWSL-----ELCAKDRVGLLSEVTRILREHGLSVSRAG 374

Query:   374 I 374
             +
Sbjct:   375 V 375

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 75/361 (20%), Positives = 155/361 (42%)

Query:    19 EPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWE 78
             + +V+ V+  +K+G   ++ +++ +  L I +   S+DG W   V  V+ D   +K+   
Sbjct:    27 DATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI-DQDGNKIRDT 85

Query:    79 SLKNRLLSVCPSILVSYYFNQP--SSNSSKPS-LYL-LKYCCVDRKGLLHDATKVLTELE 134
              + + +     S   + +F  P  SS    P+  Y  ++    DR GLL + + VLT+L 
Sbjct:    86 QVLDYIQKRIESN--AGWFIPPLRSSVGVMPTDEYTSIELAGTDRPGLLSEVSAVLTDLH 143

Query:   135 FTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQLAGP 194
               +   ++ T  + R   +  +TD     H+      T    ++ + E  + C +     
Sbjct:   144 CNVVNAEIWTH-NTRAAAVIHVTDNST--HSAI----TDPIRLSTIKE--LLCNVVRTNS 194

Query:   195 EYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQI 254
                + +   S      E      + D  D+  V     + ++ S+T+ N+    +T++ +
Sbjct:   195 GSRAAKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSASRPSVTLMNI-EKDYTVVTM 253

Query:   255 KCADQKGLFYDILRTSKDLNIQIAYGRISSS-VKGYRNMDLFIRQTDGKKVVDPKQQTAL 313
             +  D+  L +D++ T  D+   + +G +S+  V+ Y+  + +IR  DG  +    +Q   
Sbjct:   254 RSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQ--EFYIRHVDGLPINSEAEQ--- 308

Query:   314 CFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE 373
                  E ++  L   +  R   +E L    +EL  + R  +  D+T   +   + I  AE
Sbjct:   309 -----ERVIQCLEAAIERRA--SEGL---ELELSAEDRVGLLSDITRTFRENSLTIVRAE 358

Query:   374 I 374
             I
Sbjct:   359 I 359

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
 Identities = 34/137 (24%), Positives = 65/137 (47%)

Query:   239 ITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSS-VKGYRNMDLFIR 297
             + V NL    ++++ IKC D+  L +D + T  D+N  +++  I +   + Y+  + +IR
Sbjct:   259 VDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQ--EYYIR 316

Query:   298 QTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPRVFYD 357
              TDG  V   K +       ++ ++  L+  +  R   +E L    +ELC   R  +  D
Sbjct:   317 HTDGSPV---KSEAE-----RQRVIKCLKAAIQRRV--SEGL---KLELCTSDRVGLLSD 363

Query:   358 VTLALKALGICIFSAEI 374
             VT   +   + +  AE+
Sbjct:   364 VTRIFRENSLTVTRAEV 380

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
 Identities = 46/185 (24%), Positives = 82/185 (44%)

Query:   235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDL 294
             N   + +DN      T++++  A++ G+  ++++   DLN+ I    ISS   G   MD+
Sbjct:    23 NPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSD--GGWFMDV 80

Query:   295 F-IRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPDTELLVANPVELCGKGRPR 353
             F +   DG KV D      +   L  E      +      P T+  V   +EL G  RP 
Sbjct:    81 FNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTV---IELTGCDRPG 137

Query:   354 VFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK 413
             +  +++  L  L   + +AEI  H+T  R   V + + D+     ++  +  +RI   ++
Sbjct:   138 LLSELSAVLTHLKCSVLNAEIWTHNT--RAAAVMQ-VTDDLTGCGISDPERLSRIKNLLR 194

Query:   414 KTLMG 418
               L G
Sbjct:   195 NVLKG 199

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 32/147 (21%), Positives = 70/147 (47%)

Query:    21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESL 80
             +VV VN  +K GL  ++ +I+ +  L I +   S+DG W ++ ++ V D   +K+  +S+
Sbjct:    38 TVVKVNSENKQGLLLEVVQILTDMNLIITKSYISSDGGW-FMDVFHVKDEHGNKLTDKSV 96

Query:    81 KNRLL-SVCPSILVSYYF--NQPSSNSSKPSLY------LLKYCCVDRKGLLHDATKVLT 131
              N +  ++  S   S +   ++ ++NS +P L        ++    DR GL  +      
Sbjct:    97 INHIKHAIGTSRRESDFIKASEANNNSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFA 156

Query:   132 ELEFTIQRVKVMTTPDGRVLDLFFITD 158
             +L   +      +  + R+  + +++D
Sbjct:   157 DLHCNVMEAHAWSH-NARLACIAYVSD 182

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII000438 hypothetical protein (421 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	419
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	8e-40
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	3e-39
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	1e-38
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	2e-37
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-12
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-11
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-10
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-10
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-08
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	7e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-05
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	7e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	4e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	7e-04
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	8e-04
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	0.001
pfam01842	66	pfam01842, ACT, ACT domain	0.003

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  136 bits (344), Expect = 8e-40
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRR 169
           +LLK  C DRKGLLHD T+VL ELE TI+RVKV TTPDGRVLDLFFITD  ELLHTK+RR
Sbjct: 1   FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRR 60

Query: 170 EETCEHMIAVLGE 182
           EET +++ AVLG+
Sbjct: 61  EETYDYLRAVLGD 73

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  134 bits (340), Expect = 3e-39
 Identities = 53/69 (76%), Positives = 57/69 (82%)

Query: 21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESL 80
          SV+T+NCPDK GLGCDLCRIILEFGL I RGD STDGRWCYIV WVVP   S KV W+ L
Sbjct: 1  SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLL 60

Query: 81 KNRLLSVCP 89
          KNRL+S CP
Sbjct: 61 KNRLMSACP 69

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  133 bits (336), Expect = 1e-38
 Identities = 55/75 (73%), Positives = 64/75 (85%)

Query: 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQ 309
           TLLQI+C DQKGL YDILRTSKD NIQI+YGR SS VKGYR +DLFI Q+DGKK++DPK+
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 310 QTALCFHLKEEMLHP 324
           Q ALC  L+EEM+ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (328), Expect = 2e-37
 Identities = 54/78 (69%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLAS 401
           NPVEL GKGRPRVFYD+TLALK LGICIFSAEIGRHST  RQWEVYR LL E        
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLG 59

Query: 402 SQARNRIVEKVKKTLMGW 419
            + R+++V++V KTLMGW
Sbjct: 60  GRQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRR 169
            +L+   +DR GLL D T+VL EL   I   K+ T  + R  D+F++TD        +R+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDADGQPLDPERQ 59

Query: 170 EETCEHMIAVL 180
           E     +   L
Sbjct: 60  EALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 115 CCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCE 174
              DR GLL D T+VL +L   I   ++ TT + R LD+F++TD        +R     E
Sbjct: 6   YAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEE 64

Query: 175 HMIAVL 180
            +   L
Sbjct: 65  ALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQ 309
           T++++   D+ GL  DI R   DL + I   RIS++ +  R +D+F       + +DP++
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPER 58

Query: 310 QTALCFHLKEEM 321
              L   L++ +
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 35/198 (17%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEH 175
             DR  L       L+    +I   ++ TT DG  LD F + +       + RR      
Sbjct: 691 APDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE 750

Query: 176 MIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQN 235
           +I  L         +        L+ F  +PP V                          
Sbjct: 751 LIEALLSGKAQPPRR--RRIPRKLRHFP-IPPRV-------------------------- 781

Query: 236 KASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF 295
               T+    S   T+L+++  D+ GL   +     DL + +   +I++   G R  D+F
Sbjct: 782 ----TILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT--FGERVEDVF 835

Query: 296 IRQTDGKKVVDPKQQTAL 313
           I      + ++ + + +L
Sbjct: 836 IVTDADGQALNAELRQSL 853

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWV--VPDASSDKVDWE 78
          +VV V  PD+ GL  D+ R++ + GL I     ST G     V +V        D     
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 79 SLKNRLLSVC 88
           L+  L    
Sbjct: 61 RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 40/214 (18%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEH 175
             D  GL              I   ++ TT DGR LD F+I D       + RR      
Sbjct: 739 AADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAK 798

Query: 176 MI-AVL-GEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVT 233
            I   L GE  +   +       +  +AF  +PP V                        
Sbjct: 799 AIEDALSGEVRLPEALAKRTKPKKRARAFH-VPPRV------------------------ 833

Query: 234 QNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMD 293
                 T+DN  S   T++++   D+ GL YD+ R   DLN+ IA   I++   G R +D
Sbjct: 834 ------TIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVD 885

Query: 294 LF-IRQTDGKKVVDPKQQTALCFHLKEEMLHPLR 326
           +F +    G K+ +  +Q A    ++  +L  L 
Sbjct: 886 VFYVTDLFGLKITNEARQAA----IRRALLAALA 915

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ 403
           VE+    RP +  D+T  L  LG+ I  A I   +T  R  +V+ ++ D          +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARI--STTGERALDVF-YVTDSDGR--PLDPE 57

Query: 404 ARNRIVEKVKKTL 416
              R+ E ++  L
Sbjct: 58  RIARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 40/200 (20%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD----GLELLHTKQRREE 171
             D+ GL       L  L  ++   +V TT DG  LD F + D            Q   +
Sbjct: 675 APDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQ 734

Query: 172 TCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTE 231
               ++A L +   +  I         LQ F  +PP V                      
Sbjct: 735 GLVDVLAGLAKDPDT--ISARRARRRRLQHFA-VPPRV---------------------- 769

Query: 232 VTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN 291
                   T+ N  S   T+++++  D+ GL   + RT ++L + I   +I++   G + 
Sbjct: 770 --------TILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTF--GEKA 819

Query: 292 MDLFIRQ-TDGKKVVDPKQQ 310
            D+F      G K+ D ++Q
Sbjct: 820 EDVFYVTDLFGLKLTDEEEQ 839

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 39/186 (20%)

Query: 23  VTVNCPDKNGLGCDLCRIILEFGLFIVRGDF--STDGRW--CYIVLWVV----------- 67
           V V  PD+  L   +C  +   GL IV      + DG     +IVL              
Sbjct: 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAA 746

Query: 68  -----------PDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCC 116
                        A   +      K R   + P + +          ++     +L+   
Sbjct: 747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTIL--------PTASNDKTVLEVRA 798

Query: 117 VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHM 176
           +DR GLL     V  +L  ++   K+ TT   RV D+F +TD       +    E  + +
Sbjct: 799 LDRPGLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADG----QALNAELRQSL 853

Query: 177 IAVLGE 182
           +  L E
Sbjct: 854 LQRLLE 859

Length = 867

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI 177
           DR GL       L +L   I   ++ TT DG  LD F + D       ++ R       +
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI 177
           DR GLL    + L EL  +IQ  K+ TT   +  D+F++TD    L   +  +E  + ++
Sbjct: 788 DRPGLLARVGRTLEELGLSIQSAKI-TTFGEKAEDVFYVTD----LFGLKLTDEEEQRLL 842

Query: 178 AVLGE 182
            VL  
Sbjct: 843 EVLAA 847

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQ- 309
           LL++ C+D+KGL +D+     +L + I   ++S++  G R +DLF   TD ++++  K+ 
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDG-RVLDLFF-ITDARELLHTKKR 59

Query: 310 QTALCFHLK 318
           +     +L+
Sbjct: 60  REETYDYLR 68

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDG 159
             DR GLL     VL E    I  ++  T+ DG   D+F + DG
Sbjct: 5   GPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDG 48

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD 158
           L+    DR GLL D T+V  E   T+ R ++ +T     +++F++TD
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEI-STQGDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLEL-LHTKQRREETCE 174
             DR GLL+D T+ L++L   I    +  T   R +D+F++TD   L +  + R+     
Sbjct: 850 GRDRPGLLYDLTRALSDLNLNIASAHI-ATYGERAVDVFYVTDLFGLKITNEARQAAIRR 908

Query: 175 HMIAVLGE 182
            ++A L E
Sbjct: 909 ALLAALAE 916

Length = 931

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 37.0 bits (87), Expect = 0.001
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLF-IRQTDGKKVVDPK 308
           T+L++   D+ GL  D+ R   +L + I   +I++   G R  D+F +   DG+  +DP+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQP-LDPE 57

Query: 309 QQTALCFHLKEEM 321
           +Q AL   L E +
Sbjct: 58  RQEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 116 CVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCE 174
             DR GLL +    L +    I+ +   T+ D   ++ +  + D  +L    +  ++   
Sbjct: 7   VPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.9
PRK03381	774	PII uridylyl-transferase; Provisional	99.9
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.84
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.84
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.81
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.76
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.69
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.66
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.65
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.64
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.58
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.55
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.45
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.29
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.28
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.28
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.25
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.25
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.24
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.19
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.12
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.96
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.89
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.83
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.57
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.52
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.4
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.36
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.2
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.15
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.13
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.11
PRK00194	90	hypothetical protein; Validated	98.07
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.03
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.03
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.8
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.78
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.77
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.74
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.73
PRK00194	90	hypothetical protein; Validated	97.72
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.66
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.65
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.63
COG4747	142	ACT domain-containing protein [General function pr	97.61
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.58
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.57
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.49
COG3830	90	ACT domain-containing protein [Signal transduction	97.44
COG4747	142	ACT domain-containing protein [General function pr	97.33
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.33
COG3830	90	ACT domain-containing protein [Signal transduction	97.33
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.3
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.29
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.28
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.25
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.22
PRK07431	587	aspartate kinase; Provisional	97.22
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.16
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.14
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.14
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.08
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.03
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.99
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.97
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.94
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.94
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.93
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.93
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.89
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.88
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.87
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.86
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.79
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.78
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.78
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.77
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.77
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.73
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.73
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.72
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.68
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.67
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.67
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.66
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.63
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.6
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.56
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.56
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.56
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.54
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.53
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.49
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.48
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.4
PRK08577	136	hypothetical protein; Provisional	96.36
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.35
PRK11899	279	prephenate dehydratase; Provisional	96.31
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.31
cd02116	60	ACT ACT domains are commonly involved in specifica	96.28
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.26
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.25
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.23
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.22
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.21
PRK08577	136	hypothetical protein; Provisional	96.17
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.12
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.1
PRK04435	147	hypothetical protein; Provisional	96.1
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.09
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.07
PRK07431	587	aspartate kinase; Provisional	96.03
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.86
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.64
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.6
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.55
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.47
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.23
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.23
PRK07334	403	threonine dehydratase; Provisional	95.19
PRK06635	404	aspartate kinase; Reviewed	95.13
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.13
PRK06291	465	aspartate kinase; Provisional	95.11
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.11
PRK07334	403	threonine dehydratase; Provisional	95.07
PRK06635	404	aspartate kinase; Reviewed	95.05
PLN02551	521	aspartokinase	95.02
cd02116	60	ACT ACT domains are commonly involved in specifica	94.89
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.89
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.85
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	94.85
PRK04435	147	hypothetical protein; Provisional	94.84
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.43
PRK08210	403	aspartate kinase I; Reviewed	94.11
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.0
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	93.83
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.78
COG1707	218	ACT domain-containing protein [General function pr	93.76
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.6
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.58
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.53
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.39
PRK06382	406	threonine dehydratase; Provisional	93.36
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.25
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	93.19
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.94
PRK09034	454	aspartate kinase; Reviewed	92.93
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.86
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	92.79
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.56
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.39
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.3
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	92.23
PRK06291	465	aspartate kinase; Provisional	92.22
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	92.01
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.7
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.55
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.47
PRK08818	370	prephenate dehydrogenase; Provisional	91.46
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.16
PRK08210	403	aspartate kinase I; Reviewed	91.04
COG1707	218	ACT domain-containing protein [General function pr	91.02
PRK09181	475	aspartate kinase; Validated	90.98
PRK09084	448	aspartate kinase III; Validated	90.81
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.46
PRK11899	279	prephenate dehydratase; Provisional	90.34
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	90.29
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	90.22
PRK11898	283	prephenate dehydratase; Provisional	89.43
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	89.41
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.03
PLN02317	382	arogenate dehydratase	88.83
PRK08198	404	threonine dehydratase; Provisional	88.72
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	88.59
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.29
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	88.11
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	87.89
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	87.59
PRK09181	475	aspartate kinase; Validated	87.22
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.03
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.89
PRK06349	426	homoserine dehydrogenase; Provisional	86.64
PRK09034	454	aspartate kinase; Reviewed	86.48
PLN02551	521	aspartokinase	86.42
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.2
PRK06545	359	prephenate dehydrogenase; Validated	85.92
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	85.84
PRK06382	406	threonine dehydratase; Provisional	85.34
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	84.8
PRK08526	403	threonine dehydratase; Provisional	84.64
PRK08198	404	threonine dehydratase; Provisional	84.03
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	83.93
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	83.83
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	83.69
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	83.51
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	83.13
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	82.87
COG4492	150	PheB ACT domain-containing protein [General functi	82.67
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	82.52
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	82.39
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	80.73
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.71
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.07

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=8.3e-28  Score=264.44  Aligned_cols=171  Identities=19%  Similarity=0.234  Sum_probs=151.4

Q ss_pred             CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      .+|.|.+++..+.++|+|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. ++++++|
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            46888899999999999999999999999999999999999999999998 5789999999998 8898885 5788999


Q ss_pred             HHHHHHHhcCCCe-------------------eeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044730          314 CFHLKEEMLHPLR-------------------VMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEI  374 (419)
Q Consensus       314 ~~~L~~al~~~~~-------------------v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I  374 (419)
                      ++.|..+|..+..                   |.+.+..+    ..+|+|||.|.|||||||+|+++|.++|++|++|||
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s----~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI  816 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEK----QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI  816 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCC----CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence            9999999864421                   11222222    368999999999999999999999999999999999


Q ss_pred             eecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          375 GRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       375 ~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      +|  .|++  |+|+|||+|.+|+|++++++ ++|+++|.+.|
T Consensus       817 ~T--~ger--v~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        817 TT--IGEK--AEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             cc--cCce--EEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            99  8899  99999999999999998766 99999999876

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.1e-27  Score=264.16  Aligned_cols=172  Identities=17%  Similarity=0.207  Sum_probs=151.5

Q ss_pred             CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      .+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence            46788899999999999999999999999999999999999999999998 5667999999998 8888874 5788999


Q ss_pred             HHHHHHHhcCCC--------------------eeeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 044730          314 CFHLKEEMLHPL--------------------RVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE  373 (419)
Q Consensus       314 ~~~L~~al~~~~--------------------~v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~  373 (419)
                      +++|.++|..+.                    +|.+.+..+    ..+|+|||.|.|||||||+|+++|.++|++|++||
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s----~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~Ak  840 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHT----DRRSYMELIALDQPGLLARVGKIFADLGISLHGAR  840 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCC----CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEE
Confidence            999999995542                    122222222    36999999999999999999999999999999999


Q ss_pred             EeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          374 IGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       374 I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                      |+|  .|++  |+|+|||++.+|.+++ ++++++|+++|.++|.
T Consensus       841 I~T--~ger--a~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        841 ITT--IGER--VEDLFILATADRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             Eec--cCce--EEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence            999  8899  9999999999999999 7778999999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=3.2e-26  Score=252.68  Aligned_cols=182  Identities=19%  Similarity=0.228  Sum_probs=155.6

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+..+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+...+++++++|++.|.++|.+.
T Consensus       696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~  775 (884)
T PRK05007        696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS  775 (884)
T ss_pred             cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            56668999999999999999999999999999999999999999999999999998776556789999999999999765


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG  261 (419)
                      .     ..    .       ...++                   .++..++  .+|.|.|+|..+..+|+|+|.|+||||
T Consensus       776 ~-----~~----~-------~~~~~-------------------~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpG  820 (884)
T PRK05007        776 S-----PQ----P-------PKPRR-------------------LPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPG  820 (884)
T ss_pred             C-----CC----c-------ccccc-------------------cccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence            1     00    0       00000                   0111122  688999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      |||+|+++|.++|++|.+|+|+|  .|+++.|+|||+ .+|.++. +++++.|+++|.++|..
T Consensus       821 LL~~I~~~l~~~~l~I~~AkI~T--~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        821 LLARVGKIFADLGISLHGARITT--IGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHHHCCcEEEEEEEec--cCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999999999999996  799999999997 7889988 66889999999988853

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=4.5e-26  Score=250.78  Aligned_cols=179  Identities=20%  Similarity=0.288  Sum_probs=153.2

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .++.+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.++...+++++++|++.|.++|.+.
T Consensus       672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~  751 (854)
T PRK01759        672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN  751 (854)
T ss_pred             cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            56678999999999999999999999999999999999999999999999999998776556789999999999999765


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG  261 (419)
                      .     ..              .... ..                ++..++  .+|.|.|+|..+..+|+|+|.++||||
T Consensus       752 ~-----~~--------------~~~~-~~----------------~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpG  795 (854)
T PRK01759        752 K-----LK--------------KLNL-EE----------------NHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAG  795 (854)
T ss_pred             C-----Cc--------------chhc-cc----------------cccccCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence            1     10              0000 00                011111  678999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      |||+|+++|.++|++|+.|+|+|  .|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus       796 LL~~I~~~l~~~~l~i~~AkI~T--~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        796 LLAQVSQVFSELNLNLLNAKITT--IGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEcc--cCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999999999999996  799999999998 88999987644 99999988776

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.2e-25  Score=246.14  Aligned_cols=182  Identities=18%  Similarity=0.264  Sum_probs=155.2

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCC--chhHHHHHHHHHHHHhcccc
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLH--TKQRREETCEHMIAVLGEYS  184 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~--~~~r~~~i~~~L~~vL~~~~  184 (419)
                      .+.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|+++++...  +++|+++|++.|.++|.+..
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~  781 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD  781 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999999999999999999999877642  56899999999999997751


Q ss_pred             cchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCccH
Q 044730          185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKGL  262 (419)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpGL  262 (419)
                           .+              +..+...               .++..++  .+|.|.+++..+.++|+|+|+++|||||
T Consensus       782 -----~~--------------~~~~~~~---------------~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGL  827 (895)
T PRK00275        782 -----DY--------------PTIIQRR---------------VPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGL  827 (895)
T ss_pred             -----cc--------------chhhhhh---------------hhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCH
Confidence                 10              0000000               0011111  5789999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          263 FYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       263 l~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      |++|+++|+.+|+||.+|+|.|  .|+++.|+|+|. .+|.++.+++++++|+++|.++|..+
T Consensus       828 La~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        828 LARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999997  389999999998 88999988888999999999999654

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=6e-25  Score=243.06  Aligned_cols=171  Identities=20%  Similarity=0.248  Sum_probs=150.3

Q ss_pred             ccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHH
Q 044730          236 KASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALC  314 (419)
Q Consensus       236 ~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  314 (419)
                      .|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            5778888877789999999999999999999999999999999999998 6789999999998 8888888877899999


Q ss_pred             HHHHHHhcCCCe-----------------------eeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEE
Q 044730          315 FHLKEEMLHPLR-----------------------VMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFS  371 (419)
Q Consensus       315 ~~L~~al~~~~~-----------------------v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~  371 (419)
                      +.|.++|.....                       |.+.+    .....+|.++|.|.|||||||+|+++|.++|++|++
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~----~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~  809 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILN----TASRKATIMEVRALDRPGLLARVGRTLEELGLSIQS  809 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEcc----CCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEE
Confidence            999999865321                       11111    112468999999999999999999999999999999


Q ss_pred             EEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          372 AEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       372 A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      |+|.|  .|++  ++|+|||++..|.|+++ +++++|+++|.++|
T Consensus       810 a~i~t--~~~~--~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       810 AKITT--FGEK--AEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEe--cCcc--ceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999  7888  99999999999999997 67799999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=239.73  Aligned_cols=178  Identities=17%  Similarity=0.249  Sum_probs=149.0

Q ss_pred             ccEEEEEeCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCC-CHHHH
Q 044730          236 KASITVDNLLS---PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVV-DPKQQ  310 (419)
Q Consensus       236 ~~~V~v~~~~~---~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~-~~~~~  310 (419)
                      .|.|.+.+...   .+++.|.|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. .+|.++. +++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T-t~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT-SSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-cCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            45566766665   58999999999999999999999999999999999998 5778999999998 8888854 35788


Q ss_pred             HHHHHHHHHHhcCCCeee--ee---CC---CC---------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 044730          311 TALCFHLKEEMLHPLRVM--VT---NR---GP---------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAE  373 (419)
Q Consensus       311 ~~l~~~L~~al~~~~~v~--~~---~~---~~---------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~  373 (419)
                      ++|++.|.++|..+....  +.   ++   ..         ......+|.|+|+|.|||||||+|+++|.++|++|++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            999999999986543100  00   00   00         011236899999999999999999999999999999999


Q ss_pred             EeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcC
Q 044730          374 IGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG  418 (419)
Q Consensus       374 I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~  418 (419)
                      |.|  .|++  ++|+|||++.+|.++++++++++|+++|.++|.+
T Consensus       847 I~T--~g~~--v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        847 IAT--LGER--VEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             EEe--cCCE--EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999  7899  9999999999999999888889999999998853

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.9e-24  Score=237.74  Aligned_cols=181  Identities=22%  Similarity=0.261  Sum_probs=150.7

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+..+.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.||+++|+|+|.++.+..++++++++|++.|.++|.+.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~  752 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ  752 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence            44557899999999999999999999999999999999999999999999999998776567789999999999999875


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG  261 (419)
                      .     .+              +.....               +.++..++  .++.|.+++..+.++|+|+|.++||||
T Consensus       753 ~-----~~--------------~~~~~~---------------~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG  798 (856)
T PRK03059        753 A-----PL--------------PEPSKG---------------RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPG  798 (856)
T ss_pred             C-----Cc--------------chhhcc---------------cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence            1     10              000000               00111122  578899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ||++|+++|+.+|+||.+|+|+|  .|+++.|+|+|.  +.++.+++++++|++.|.++|.
T Consensus       799 LLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        799 LLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998  389999999995  3345567789999999988773

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.9e-24  Score=235.94  Aligned_cols=180  Identities=16%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+..+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|+++.+..  .+++.+|++.|.++|.+.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~  762 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD  762 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence            344578999999999999999999999999999999999999999999999999987653  467888999999999875


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG  261 (419)
                      .     .+   .        .+.    +              +..++..++  .+|.|.+++..+.++|+|+|.+.||||
T Consensus       763 ~-----~~---~--------~~~----~--------------~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        763 L-----QK---V--------RPA----R--------------RAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             C-----Cc---c--------ccc----c--------------ccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            1     10   0        000    0              000111112  688999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ||++|+++|+++|++|.+|+|+|  .|+++.|+|+|+ .+|.++.++++ +.|+++|.++|.
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999999999999997  489999999998 88888776544 999999988874

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=3.6e-24  Score=236.86  Aligned_cols=183  Identities=21%  Similarity=0.307  Sum_probs=152.8

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCC-chhHHHHHHHHHHHHhcc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLH-TKQRREETCEHMIAVLGE  182 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~r~~~i~~~L~~vL~~  182 (419)
                      ..+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+... +++++++|++.|.++|.+
T Consensus       663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~  742 (850)
T TIGR01693       663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG  742 (850)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence            3447889999999999999999999999999999999999889999999999999876644 567899999999999976


Q ss_pred             cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCc
Q 044730          183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQK  260 (419)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~Drp  260 (419)
                      ..     ..              ++...+.             ++.++..++  .+|.|.|+|..+..+|+|+|.|+|||
T Consensus       743 ~~-----~~--------------~~~~~~~-------------~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~Drp  790 (850)
T TIGR01693       743 LA-----KD--------------PDTISAR-------------RARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRP  790 (850)
T ss_pred             CC-----cc--------------ccccccc-------------cCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCcc
Confidence            41     10              0000000             000111222  67899999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          261 GLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       261 GLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      |||++|+++|+++|++|.+|+|.|  .|+++.|+|+++ ..|.|+.+ ++++.|+++|.++|
T Consensus       791 Gll~~i~~~l~~~~~~i~~a~i~t--~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       791 GLLARVGRTLEELGLSIQSAKITT--FGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEEe--cCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999997  689999999998 78999887 68899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.93  E-value=1.2e-25  Score=161.83  Aligned_cols=69  Identities=77%  Similarity=1.451  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCC
Q 044730           21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCP   89 (419)
Q Consensus        21 t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~   89 (419)
                      |+|+|+||||.||+||+++++.+|||+|+||++||||+|||.||||+.+....+++|++|++||.++||
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP   69 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP   69 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999999999999999999988888999999999999997

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.5e-23  Score=233.52  Aligned_cols=186  Identities=25%  Similarity=0.359  Sum_probs=156.2

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCC-CchhHHHHHHHHHHHHhcc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELL-HTKQRREETCEHMIAVLGE  182 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~r~~~i~~~L~~vL~~  182 (419)
                      .+..+.+.|+|+++||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.+.. .+++++++|++.|..++.+
T Consensus       727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  806 (931)
T PRK05092        727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG  806 (931)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            445578999999999999999999999999999999999999999999999999977654 3788999999999998876


Q ss_pred             cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccc-cccc--CccEEEEEeCCCCCeEEEEEEecCC
Q 044730          183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLST-EVTQ--NKASITVDNLLSPAHTLLQIKCADQ  259 (419)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~V~v~~~~~~~~t~v~V~~~Dr  259 (419)
                      ..     .+              +..+...              ..++ ..++  .+|.|.|+|..+.++|+|+|.++||
T Consensus       807 ~~-----~~--------------~~~~~~r--------------~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~Dr  853 (931)
T PRK05092        807 EV-----RL--------------PEALAKR--------------TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDR  853 (931)
T ss_pred             CC-----CC--------------ccccccc--------------cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCc
Confidence            41     11              0000000              0000 1111  6789999999999999999999999


Q ss_pred             ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          260 KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       260 pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      ||||++|+++|+++|+||.+|+|.|  .|+++.|+|++. .+|.++.++++++.|+++|.++|..+
T Consensus       854 pGLl~~I~~~l~~~gl~I~~A~I~T--~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        854 PGLLYDLTRALSDLNLNIASAHIAT--YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             CcHHHHHHHHHHHCCceEEEEEEEE--cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999996  589999999997 88999988888999999999999653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.5e-23  Score=228.56  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=142.5

Q ss_pred             ccEEEEEe-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          236 KASITVDN-LLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       236 ~~~V~v~~-~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      .+.|.+.. .+..+.+.|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. ++|.+   +++++++
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t-~~~g~~ld~f~V~~~~~~~---~~~~~~i  751 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLD-APHDAIFDVFEVLPQDTYA---DGDPQRL  751 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEE-cCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence            34444433 66779999999999999999999999999999999999998 5778999999998 66664   3467889


Q ss_pred             HHHHHHHhcCCCeee-ee----CCC------C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          314 CFHLKEEMLHPLRVM-VT----NRG------P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       314 ~~~L~~al~~~~~v~-~~----~~~------~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      ++.|..+|....... ..    ++.      +      ......+|.|+|.|.|||||||+|+.+|+++|++|++|+|+|
T Consensus       752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T  831 (869)
T PRK04374        752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT  831 (869)
T ss_pred             HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence            999999986532110 00    000      0      011246899999999999999999999999999999999999


Q ss_pred             cccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          377 HSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       377 ~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                        .|++  ++|+|||+|.+|.+++++++ ++|+++|.+.|.
T Consensus       832 --~g~~--a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        832 --FGER--AEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             --cCCE--EEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence              7899  99999999999999987776 999999999875

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=3.8e-23  Score=230.25  Aligned_cols=179  Identities=22%  Similarity=0.305  Sum_probs=152.4

Q ss_pred             CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      .++.|.+.+..+.+++.|+|+++||||||++|+++|+.+|+||.+|+|+| +.++.+.|+|+|. .+|.++.+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence            34778888888889999999999999999999999999999999999998 5678999999997 788887778899999


Q ss_pred             HHHHHHHhcCCCe--eeee----C--C--C---C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044730          314 CFHLKEEMLHPLR--VMVT----N--R--G---P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEI  374 (419)
Q Consensus       314 ~~~L~~al~~~~~--v~~~----~--~--~---~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I  374 (419)
                      ++.|..++.....  ..+.    +  +  .   +      ......+|.|+|.+.||||||++|+++|.++|++|.+|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            9999988844211  0000    0  0  0   0      0112357999999999999999999999999999999999


Q ss_pred             eecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcC
Q 044730          375 GRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMG  418 (419)
Q Consensus       375 ~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~  418 (419)
                      .|  .|++  ++|+|||++.+|.++.+++++++|+++|.+.|.+
T Consensus       877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            99  7888  9999999999999999998889999999998864

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=6.7e-23  Score=223.66  Aligned_cols=173  Identities=19%  Similarity=0.284  Sum_probs=139.6

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS  186 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~  186 (419)
                      .+.+.|+|+|+||||||++|+++|+.+||||++|+|+| .||+++|+|+|+++.+..+   .++++++.|+++|.+.. .
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence            68899999999999999999999999999999999999 9999999999999776533   35889999999997741 0


Q ss_pred             hhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCccHHH
Q 044730          187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKGLFY  264 (419)
Q Consensus       187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~  264 (419)
                      .  .                ..+.+.    .+.       ..++..++  .++.|.+++..+.++|+|+|.++||||||+
T Consensus       672 ~--~----------------~~~~~~----~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla  722 (774)
T PRK03381        672 V--L----------------ARLAAR----EAA-------AAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLA  722 (774)
T ss_pred             h--h----------------hhhhcc----ccc-------ccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHH
Confidence            0  0                000000    000       00011111  578899999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHH
Q 044730          265 DILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHL  317 (419)
Q Consensus       265 ~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L  317 (419)
                      +|+++|+++|+||.+|+|.|  .|+.+.|+|+|. .+|.++.++  ++.|+++|
T Consensus       723 ~Ia~~L~~~~lnI~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        723 RLARALERAGVDVRWARVAT--LGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             HHHHHHHHCCCeEEEEEEee--cCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            99999999999999999997  489999999998 889998764  66776665

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.2e-23  Score=216.55  Aligned_cols=176  Identities=19%  Similarity=0.207  Sum_probs=146.5

Q ss_pred             CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      ..|.|.+.+....+.|.|+|+++|+|.||+.++.++...|.||.+|+|.| +..|++.|+|+|. ++|.++. +.+...+
T Consensus       670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~t-t~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFT-TRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEE-ccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            45778877888889999999999999999999999999999999999999 6778999999998 8998877 6788888


Q ss_pred             HHHHHHHhcCCCee--------------eeeCCC--CCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 044730          314 CFHLKEEMLHPLRV--------------MVTNRG--PDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRH  377 (419)
Q Consensus       314 ~~~L~~al~~~~~v--------------~~~~~~--~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~  377 (419)
                      +..|.+++..+.-.              .+.++.  .++.....|.|||.+.||||||++|+++|.+++++|++|+|+| 
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT-  826 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT-  826 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence            88888887543111              000100  1122345899999999999999999999999999999999999 


Q ss_pred             ccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          378 STSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       378 ~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                       +||+  |+|+|||++..|.+++ ++.++.+.+++..+++
T Consensus       827 -~GEr--veD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         827 -FGER--VEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             -cccc--ceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence             9999  9999999999999996 5555777777776664

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.7e-23  Score=216.20  Aligned_cols=181  Identities=22%  Similarity=0.302  Sum_probs=152.2

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+..+.+.|.|+++|+|.||+.+++.+...|+||++|+|+|+.||+++|+|+|+++++...++.|...++..|.+++...
T Consensus       679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~  758 (867)
T COG2844         679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSG  758 (867)
T ss_pred             cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcC
Confidence            34447899999999999999999999999999999999999999999999999999988888999999999888877654


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCcccccccccccccc--CccEEEEEeCCCCCeEEEEEEecCCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQ--NKASITVDNLLSPAHTLLQIKCADQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~~~~~~~~t~v~V~~~DrpG  261 (419)
                      .      .             .|+.                .++.+++.++  .+|.|.|.+..+..+|+++|.+.||||
T Consensus       759 ~------~-------------~~~~----------------~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG  803 (867)
T COG2844         759 K------A-------------QPPR----------------RRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPG  803 (867)
T ss_pred             C------C-------------CCcc----------------ccccCcccceeccCCceeeccccCCCceEEEEEeCCccc
Confidence            1      0             0100                0111233333  689999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ||++++++|++++++|++|+|+|  .|+++.|+|+++ ..|.++.. +.++.+.+.|.+++.
T Consensus       804 LLa~v~~v~~dl~l~i~~AkItT--~GErveD~F~vt~~~~~~l~~-~~~q~l~~~ll~al~  862 (867)
T COG2844         804 LLAALAGVFADLGLSLHSAKITT--FGERVEDVFIVTDADGQALNA-ELRQSLLQRLLEALL  862 (867)
T ss_pred             HHHHHHHHHHhcccceeeeeecc--ccccceeEEEEeccccccCCH-HHHHHHHHHHHHHhc
Confidence            99999999999999999999996  899999999998 88998854 466677777766663

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=2.7e-22  Score=220.76  Aligned_cols=173  Identities=15%  Similarity=0.156  Sum_probs=142.5

Q ss_pred             ccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHH
Q 044730          236 KASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALC  314 (419)
Q Consensus       236 ~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~  314 (419)
                      .+.|.+.+.+..+.+.|+|+++||||||++|+++|+.+|+||.+|+|.| +.++.+.|+|+|. ++|. ...++++++|+
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t-~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHT-TRHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEE-cCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            4566688888889999999999999999999999999999999999998 5678899999998 6665 44567899999


Q ss_pred             HHHHHHhcCCCeee--ee---CCC------C------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 044730          315 FHLKEEMLHPLRVM--VT---NRG------P------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRH  377 (419)
Q Consensus       315 ~~L~~al~~~~~v~--~~---~~~------~------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~  377 (419)
                      +.|..+|.......  ..   ++.      +      +.....+|.|+|.+.|||||||+||.+|.++|++|++|+|.| 
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T-  821 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT-  821 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence            99999986532100  00   000      0      011236899999999999999999999999999999999999 


Q ss_pred             ccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          378 STSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       378 ~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                       .|++  ++|+|||+   +.++.+++++++|++.|.++|.
T Consensus       822 -~~~~--v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 -LGER--VEDTFLID---GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             -cCCE--EEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence             7899  99999995   3446678888999999998874

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=2.9e-22  Score=218.62  Aligned_cols=165  Identities=17%  Similarity=0.183  Sum_probs=134.7

Q ss_pred             CccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHH
Q 044730          235 NKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTAL  313 (419)
Q Consensus       235 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l  313 (419)
                      .++.|.+.+.. .+.+.|+|+|+||||||++|+++|+.+|+||.+|+|.|  .++.+.|+|+|. ++|.+.    .++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l  658 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALL  658 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHH
Confidence            35778888877 89999999999999999999999999999999999997  568899999998 777653    25778


Q ss_pred             HHHHHHHhcCCCee--ee--eC-----CC---C---------CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEE
Q 044730          314 CFHLKEEMLHPLRV--MV--TN-----RG---P---------DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSA  372 (419)
Q Consensus       314 ~~~L~~al~~~~~v--~~--~~-----~~---~---------~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A  372 (419)
                      ++.|++++..+..+  ..  ..     +.   .         ......+|.|+|.|.|||||||+||.+|.++|+||++|
T Consensus       659 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~A  738 (774)
T PRK03381        659 RQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWA  738 (774)
T ss_pred             HHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEE
Confidence            88888887654211  00  00     00   0         01112579999999999999999999999999999999


Q ss_pred             EEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHH
Q 044730          373 EIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKV  412 (419)
Q Consensus       373 ~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l  412 (419)
                      +|.|  .|++  ++|+|||+|.+|.+++++  +++|+++|
T Consensus       739 kI~T--~g~~--a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        739 RVAT--LGAD--VVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             EEee--cCCe--EEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            9999  7899  999999999999999975  46666655

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.5e-20  Score=145.15  Aligned_cols=73  Identities=16%  Similarity=0.346  Sum_probs=70.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                      +|+|||.++|||||||+|+++|.++|++|++|+|+|  .|++  ++|+|||++.+|.|+++++++++|+++|.++|.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~ger--a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDD--AHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCce--EEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999  8899  999999999999999999999999999998874

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.6e-20  Score=143.88  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK  413 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~  413 (419)
                      +|+|||.+.|||||||+|+++|+++|++|++|+|+|  .|++  ++|+|||+|.+|+|+++++++++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Ger--v~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGW--FMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCe--EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            489999999999999999999999999999999999  8899  99999999999999999988888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=2.3e-19  Score=138.52  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe--ecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHc
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIG--RHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLM  417 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~--T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~  417 (419)
                      |++||.+.|||||||+|+++|+++|++|++|+|+  |  .|++  ++|+||| +.+|.++++++++++|+++|+++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T--~Ger--v~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV--KGYR--EVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc--ccCE--EEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999  9  8899  9999999 8899999999999999999999874

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.76  E-value=6.8e-18  Score=130.37  Aligned_cols=73  Identities=15%  Similarity=0.348  Sum_probs=69.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      ||+|+|.|+|||||||+|+++|+++|++|++|+|.|  .|+++.|+||+. .+|.|+.++++++.|+++|.++|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999996  799999999997 8999999999999999999999976

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2.4e-16  Score=120.87  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=62.3

Q ss_pred             CeEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhC
Q 044730           20 PSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVC   88 (419)
Q Consensus        20 ~t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~   88 (419)
                      +|+|.|.++||+|||.+++++|.++||+|.+|+|+|.|.|++|+|+|+|.+|+|+.+.+.+....++++
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            599999999999999999999999999999999999999999999999999998777776655545544

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=4.5e-16  Score=120.23  Aligned_cols=75  Identities=73%  Similarity=1.183  Sum_probs=68.9

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      |+++|.|+|||||||+|+++|+++|++|++|+|.+.|.|+++.|+|+++.+|.++.++++++.|+++|.+++.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            579999999999999999999999999999999933489999999999878888999889999999999999765

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.66  E-value=9.1e-16  Score=119.85  Aligned_cols=73  Identities=74%  Similarity=1.061  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .++|+++||||||++++++|+++|+||++|+|+|+.+|+++|+|+|+++.+..+++++++++++.|.++|++.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence            6899999999999999999999999999999999899999999999998666567889999999999998764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=1.5e-15  Score=118.10  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=69.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESL-EFPLASSQARNRIVEKVKKTLMG  418 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~-g~~l~~~~~~~~i~~~l~~~l~~  418 (419)
                      |+|||.++||||||++||++|+++|+||++|+|.|  .|++  +.|+|||+|.+ |.++.++++.+++++.|.+.|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~--~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGR--LACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCE--EEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999999999999999  7899  99999999998 99998888889999999999876

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.64  E-value=1.7e-16  Score=119.36  Aligned_cols=77  Identities=70%  Similarity=1.185  Sum_probs=73.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW  419 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~~  419 (419)
                      ++||++|+.||.++||||.+|+.+|++|++|+|..|..++++|.++.|++.+..+. ++.+..+++|.+++++.||||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999999999999999999999999999988666 888888999999999999999

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.62  E-value=3.7e-15  Score=115.50  Aligned_cols=71  Identities=25%  Similarity=0.299  Sum_probs=64.5

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCC-CchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELL-HTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~r~~~i~~~L~~vL  180 (419)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+.. .++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999998899999999999876654 47889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.61  E-value=2.4e-14  Score=130.71  Aligned_cols=138  Identities=12%  Similarity=0.115  Sum_probs=96.3

Q ss_pred             CCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730          105 SKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS  184 (419)
Q Consensus       105 ~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~  184 (419)
                      +...++.|+++|+||||+.++|+++|+++||||.+++... .+|.+.-++.|..      ++..+++++..|...-...+
T Consensus         4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~-lgg~Fa~i~lvs~------~~~~~~~le~~L~~l~~~~~   76 (190)
T PRK11589          4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM-LGEEFTFIMLLSG------SWNAITLIESTLPLKGAELD   76 (190)
T ss_pred             CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh-hCCceEEEEEEeC------ChhHHHHHHHHHHhhhhhcC
Confidence            3457899999999999999999999999999999999988 6788877888743      24567888888776222211


Q ss_pred             cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHH
Q 044730          185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFY  264 (419)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~  264 (419)
                          +..            .+.+.                    ...   .       .......+.|+|.+.|||||++
T Consensus        77 ----L~i------------~v~~~--------------------~~~---~-------~~~~~~~~~v~v~G~DrPGIV~  110 (190)
T PRK11589         77 ----LLI------------VMKRT--------------------TAR---P-------RPAMPATVWVQVEVADSPHLIE  110 (190)
T ss_pred             ----eEE------------EEEec--------------------ccc---c-------cccCCceEEEEEEECCCCCHHH
Confidence                110            00000                    000   0       0011124689999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEEeecCc--eeEeEEEE
Q 044730          265 DILRTSKDLNIQIAYGRISSSVKGY--RNMDLFIR  297 (419)
Q Consensus       265 ~i~~~L~~~~~~I~~A~I~t~t~g~--~~~d~F~v  297 (419)
                      +++++|+++|+||.+  +.|.+.+.  ...+.|.+
T Consensus       111 ~vT~~la~~~iNI~~--L~T~~~~a~~~~~~lf~~  143 (190)
T PRK11589        111 RFTALFDSHHMNIAE--LVSRTQPAEGERPAQLHI  143 (190)
T ss_pred             HHHHHHHHcCCChhh--eEEeeecCCCCCcccEEE
Confidence            999999999999998  54444442  34445544

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=9.3e-15  Score=113.56  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCC-CC-CCchhHHHHHHHHHHHHhcc
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGL-EL-LHTKQRREETCEHMIAVLGE  182 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~-~~-~~~~~r~~~i~~~L~~vL~~  182 (419)
                      |.|+++++||||||++|+++|+++||||++|+++|. +|+++|+|+|++++ +. ..++++++++++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999985 99999999999875 44 35789999999999988753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.58  E-value=3.2e-14  Score=129.90  Aligned_cols=136  Identities=12%  Similarity=0.058  Sum_probs=100.4

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-CC
Q 044730          247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH-PL  325 (419)
Q Consensus       247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~-~~  325 (419)
                      ..+.+|++.|+|||||+++++++|+++|+||.+.+...  .|+.+.-++.+.  +.    +.....|+..|...-+. .+
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~--lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM--LGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh--hCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCe
Confidence            46789999999999999999999999999999988885  567666555553  22    23456777777654422 44


Q ss_pred             eeeeeCCCC--CCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          326 RVMVTNRGP--DTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       326 ~v~~~~~~~--~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      ++.+..-..  ....+..+.++|.|.||||++++||++|+++|+||.+.+..|  .+...+..+.|...
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~--~~a~~~~~~lf~~~  144 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT--QPAEGERPAQLHIQ  144 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee--ecCCCCCcccEEEE
Confidence            554422111  111223579999999999999999999999999999999999  55533466667654

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.58  E-value=1.5e-14  Score=112.03  Aligned_cols=71  Identities=25%  Similarity=0.332  Sum_probs=65.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeeccc-CCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHST-SHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~-Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      +.|+|+++||||||++|+++|..+|++|.+|+|.|  . +++  +.|+|||++.+|.++.++++.+++++.|++.|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T--~~~~~--v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT--TRDGY--ALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE--eCCCe--EEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            57999999999999999999999999999999998  5 477  99999999999999988888899999988764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=5.6e-14  Score=109.72  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      .+||.++||||||++|+++|+++|++|.+|+|.|- .|++  +.|+|||.|.+|. ..+++++++++++|+++|
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~--v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGR--VLDLFFITDAREL-LHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCE--EEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999951 4577  9999999999877 566778888999998876

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.45  E-value=7.3e-13  Score=100.35  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=55.8

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      +.|.|+++||||||++++++|+.+|+||++|+++|+.+|+++|+|+|.+.++..     -+.+++.|..+|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            478999999999999999999999999999999999999999999999975541     334555555443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.29  E-value=3.1e-11  Score=93.23  Aligned_cols=67  Identities=25%  Similarity=0.341  Sum_probs=57.7

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMI  177 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~  177 (419)
                      +.|+|+++||||+|++|+++|+++|+||++|+++|. +++++|+|+|+++++...++++++++++.|.
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999984 7799999999997665446677777776653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.28  E-value=5.2e-11  Score=104.48  Aligned_cols=158  Identities=14%  Similarity=0.103  Sum_probs=107.5

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS  186 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~  186 (419)
                      ..++.|+++|+||||+...+++...++||||+++|+.+ .++.+.-++.+.-      +|+-.++++..|.. +..+.  
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisg------s~dav~~le~~l~~-l~~~~--   72 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISG------SWDAVTLLEATLPL-LGAEL--   72 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEee------CHHHHHHHHHHhhc-ccccC--
Confidence            44689999999999999999999999999999999998 6777766777764      47778888888876 44321  


Q ss_pred             hhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHH
Q 044730          187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDI  266 (419)
Q Consensus       187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i  266 (419)
                       ++.+                    .|.           +.        .+++.   ......+.+.|.+.||||++.++
T Consensus        73 -~L~v--------------------~m~-----------rt--------~~~~~---~a~~~~v~v~v~a~DrpgIv~~~  109 (176)
T COG2716          73 -DLLV--------------------VMK-----------RT--------GAHPT---PANPAPVWVYVDANDRPGIVEEF  109 (176)
T ss_pred             -CeEE--------------------EEe-----------ec--------CCCcc---CCCCceEEEEEEecCCccHHHHH
Confidence             0110                    010           00        00000   22345568999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHH
Q 044730          267 LRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKE  319 (419)
Q Consensus       267 ~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~  319 (419)
                      +..|..+|+||.+-.-.+....+.....|..+ .-+-|..-  ....|++++++
T Consensus       110 T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~a  161 (176)
T COG2716         110 TALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEA  161 (176)
T ss_pred             HHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHH
Confidence            99999999999874333322334456668765 32333322  24455555554

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.28  E-value=3.7e-11  Score=92.78  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK  413 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~  413 (419)
                      +.++|.++||||+|++|+.+|+++|+||.+|.+.|  .++.  +.|+|+|.+.+|.++ ++++.+++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~--~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDM--AVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCe--EEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            57999999999999999999999999999999998  5566  999999999999988 6677777777664

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.25  E-value=8.1e-11  Score=126.47  Aligned_cols=144  Identities=13%  Similarity=0.073  Sum_probs=112.4

Q ss_pred             EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcCCCee
Q 044730          250 TLLQIKC-ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLHPLRV  327 (419)
Q Consensus       250 t~v~V~~-~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~~~~v  327 (419)
                      -.++|.. +|++|+|.+++++|+.++++|.+|++.+   ++.....|.|. ..|.+.. +   ..+++.+..++...+.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQDFD-P---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCCCCC-h---HHHHHHHHHhhcCCCCc
Confidence            4678888 9999999999999999999999999996   45567789998 5566533 3   56677777777655333


Q ss_pred             eeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHH
Q 044730          328 MVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNR  407 (419)
Q Consensus       328 ~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~  407 (419)
                      .  ..+++......+++||++.||||+|+.|+++|.    .|.+|+++|  .|..  ++|.||+.  .|      -.+.+
T Consensus       620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~--~~------~~r~~  681 (693)
T PRK00227        620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALK--PG------FDRAT  681 (693)
T ss_pred             c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEec--Cc------ccHHH
Confidence            2  123332334568999999999999999999998    899999999  9999  99999998  11      12577


Q ss_pred             HHHHHHHHHcC
Q 044730          408 IVEKVKKTLMG  418 (419)
Q Consensus       408 i~~~l~~~l~~  418 (419)
                      ++..|.++|-|
T Consensus       682 ~~~~~~~~~~~  692 (693)
T PRK00227        682 VERDVTRVLAG  692 (693)
T ss_pred             HHHHHHHHHhc
Confidence            88888877643

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.25  E-value=6.5e-11  Score=90.37  Aligned_cols=70  Identities=33%  Similarity=0.467  Sum_probs=62.0

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      |.|+|.++||||+|++|+++|+++++||.++++.|. +++++|+|++++..+...+.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999984 5699999999997665556789999999988753

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.24  E-value=6e-11  Score=104.09  Aligned_cols=155  Identities=15%  Similarity=0.059  Sum_probs=107.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CCC
Q 044730          247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HPL  325 (419)
Q Consensus       247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~~  325 (419)
                      ..|.+|+++++||||+...+++...++|+||.++|+..  .|+.+.  |++...|.    .+...+|++.|...=. .++
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a--~i~lisgs----~dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFA--GIMLISGS----WDAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhccee--EEEEEeeC----HHHHHHHHHHhhcccccCCe
Confidence            35789999999999999999999999999999999986  566555  44444443    2345566655543222 234


Q ss_pred             eeeeeCCCCC--CCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730          326 RVMVTNRGPD--TELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ  403 (419)
Q Consensus       326 ~v~~~~~~~~--~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~  403 (419)
                      .+.+..-.+.  ......+.++|.+.||||++.++|++|.++|++|.+....|+.  ....-.--|...-.-+-|.+-  
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~--a~~s~~~lfha~it~~lPa~~--  150 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYP--APGSSAPLFHAQITARLPANL--  150 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeee--cCCCCccceehhhhccCCCcC--
Confidence            4443322221  1223577899999999999999999999999999999999955  444456678776555555552  


Q ss_pred             HHHHHHHHHH
Q 044730          404 ARNRIVEKVK  413 (419)
Q Consensus       404 ~~~~i~~~l~  413 (419)
                      ....+++++.
T Consensus       151 ~i~~l~~~f~  160 (176)
T COG2716         151 SISALRDAFE  160 (176)
T ss_pred             cHHHHHHHHH
Confidence            1244554443

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=2.1e-10  Score=87.57  Aligned_cols=70  Identities=26%  Similarity=0.366  Sum_probs=62.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      |.++|.+.||||+|++|+++|.++|++|.++++.+  .++.  +.|.|++.+.+|.+ .++++.++|+++|.++|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~--~~~~--~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGER--AEDVFYVTDADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe--cCCE--EEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            57999999999999999999999999999999999  5566  99999999999999 45677788888887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.19  E-value=1.7e-10  Score=87.42  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      ..|.|+++||||||++++++|+.+|+||.+|+|.| +..+.+.|+|+|. .+|.-      .+.|.++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence            47899999999999999999999999999999998 5678899999998 55532      245666666654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.12  E-value=1e-09  Score=118.11  Aligned_cols=145  Identities=9%  Similarity=0.035  Sum_probs=114.2

Q ss_pred             eeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730          109 LYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC  187 (419)
Q Consensus       109 ~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~  187 (419)
                      ...++|.. +|++|+|++++++|+.++++|.+|++.+  +|..+..|.|....+..|++.+   +++.++..+.++.   
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~---  617 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDPQE---FLQAYKSGVYSEL---  617 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCChHH---HHHHHHHhhcCCC---
Confidence            35778887 9999999999999999999999999988  7888999999998888788766   7778887776541   


Q ss_pred             hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHH
Q 044730          188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDIL  267 (419)
Q Consensus       188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~  267 (419)
                        .+              .                       .   ..+|.+.+..      ++++|.+.||||+|+.++
T Consensus       618 --~~--------------~-----------------------~---~~~~~~~~~~------~~~e~r~~dr~g~l~~~~  649 (693)
T PRK00227        618 --PD--------------P-----------------------A---PGITATFWHG------NILEVRTEDRRGALGALL  649 (693)
T ss_pred             --Cc--------------c-----------------------c---CCCCceEeeC------cEEEEEeCccccHHHHHH
Confidence              10              0                       0   0234555543      599999999999999999


Q ss_pred             HHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          268 RTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       268 ~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ++|.    .|..|++.|  .|..+.|.|++..+       ..+.++++.+.+++.
T Consensus       650 ~~l~----~~~~~~~~~--~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~  691 (693)
T PRK00227        650 GVLP----DLLWITAST--PGATMIVQAALKPG-------FDRATVERDVTRVLA  691 (693)
T ss_pred             HHhh----hhhhHhhcC--CCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence            9999    788899995  78999999999721       124566666666653

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.96  E-value=7.5e-09  Score=78.51  Aligned_cols=68  Identities=31%  Similarity=0.465  Sum_probs=59.5

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      .|.|.++|+||+|++++++|+++|+||.++.+.+..+ +..+.|++..+.+...++++++++++.|.++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            6889999999999999999999999999999999544 9999999998765545568899999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.89  E-value=2e-08  Score=76.16  Aligned_cols=70  Identities=29%  Similarity=0.419  Sum_probs=60.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      +.|.+.+.|+||+|++|+.+|+++|++|.++.+.+  .++.  ..++|++.+.++.+ .++++.++++.+|+..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~--~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGER--ALDVFYVTDSDGRP-LDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCE--EEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            36889999999999999999999999999999999  5455  99999999988887 44567788888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.83  E-value=3.1e-08  Score=77.22  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG  181 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~  181 (419)
                      ++.|++.|+||||++++++++|+++||||.+.+..+ .+|++.-++.|.-+      ++..+++++.|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999 67888888888763      5678889999888443

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.57  E-value=3.9e-07  Score=71.20  Aligned_cols=63  Identities=11%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ++.|++.|+||||+.++|+++|+++||||.+++.++ .+|++.-.+.+..+      +...+.+++.|..
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~   63 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPG   63 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHH
Confidence            368999999999999999999999999999999999 67777655555532      1236778877777

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.52  E-value=1.3e-06  Score=65.14  Aligned_cols=62  Identities=24%  Similarity=0.444  Sum_probs=48.8

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCC-eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDG-RVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      |.|.+.++||||+|++++++|+++|+||..+.+.+..++ ....++...+       ....+++.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence            578999999999999999999999999999999996663 4444444433       5556677777766

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.40  E-value=3.2e-06  Score=65.83  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      +.+|++.|+||||+++.++++|+++|+||.+.+..+  .++.+.-.+.+...      ++..++|+++|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~--~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV--LGGRFTLIMLVSIP------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE--ETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE--EcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence            568999999999999999999999999999999986  56777766666522      346778888887654

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.39  E-value=1.2e-06  Score=65.43  Aligned_cols=62  Identities=26%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             eEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCC--eEEEEEEEEcCCCCCCCCHHHHHHHHHhh
Q 044730           21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGR--WCYIVLWVVPDASSDKVDWESLKNRLLSV   87 (419)
Q Consensus        21 t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~--w~~dvf~v~~~~g~~~~~~~~~~~~~~~~   87 (419)
                      |.|+|.|+||+|+|.++.++|.+.|++|..+++++++.  |.+.++++.+....     +.+.+.|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDL-----EKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGH-----HHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCH-----HHHHHHHHcc
Confidence            67999999999999999999999999999999999665  99999988877543     5555666554

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.36  E-value=2.1e-06  Score=66.64  Aligned_cols=64  Identities=20%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      +|++.|+||||+.++++++|+++||||.+.+..+ .++++...+.+.-+.+     ...+.+++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDS-----ADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCC-----CCHHHHHHHHHHHH
Confidence            3789999999999999999999999999998777 4677766777765322     24677888887743

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.20  E-value=4e-06  Score=65.01  Aligned_cols=63  Identities=17%  Similarity=0.063  Sum_probs=45.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      +|+|.|+||||++++++++|+++|+||.+.+..+  .++.+.-.|.+. +.+.      ..+.|++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~--~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV--IHGRLSLGILVQIPDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE--EcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence            3789999999999999999999999999976554  445555555665 4332      2355666666544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.15  E-value=8.2e-06  Score=65.27  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ..|++.|+||||++++|+++|+++||||.+.+..+ .++.+.-.+.+.-+. .   ....+.+++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998 567766666666431 0   123677888877733

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.13  E-value=2.3e-05  Score=60.48  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCC-eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDG-RVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .|++.|+||||++++|+++|+++||||.+.+.++.+++ ...-.+.+.-+..    .-..+.+++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF----DLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence            37899999999999999999999999999999974333 3222233322111    1136778877777

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.11  E-value=1.3e-05  Score=58.66  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      ++|+|.|||+.||=.++++++.+.|++|..+.+.| .+....-+|+|......  -+-||+.++++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence            47899999999999999999999999999999998 55567778999875433  356899999998763

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.07  E-value=1.2e-05  Score=64.45  Aligned_cols=65  Identities=18%  Similarity=0.222  Sum_probs=50.1

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|++.|+||||++++++++|+++||||.+.+..+ .++.+.-.+.+.-+. .   +...+.+++.|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISE-S---KKDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecC-C---CCCHHHHHHHHHH
Confidence            679999999999999999999999999999999888 567666555554321 1   1224667777766

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.03  E-value=4.4e-05  Score=59.69  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=47.4

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-----CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-----GRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-----g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      |++.|+|+||++++|++.|+++||||.+.+..+.+.     +++.-.+.+.-+.     ....+++++.|+.
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~   68 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEE   68 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHH
Confidence            789999999999999999999999999999998542     4444445554432     1136678887777

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.03  E-value=2.1e-05  Score=61.37  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEE  320 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~a  320 (419)
                      .++++.|+||||++++|++.|+++|+||.+++...  .++.+.-...+.  ...    ...+.|++.|...
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~--~~~----~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVE--GSW----DAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEE--ecc----ccHHHHHHHHHHH
Confidence            57999999999999999999999999999988886  345443222223  221    1245666666653

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.80  E-value=8.1e-05  Score=57.38  Aligned_cols=34  Identities=21%  Similarity=0.119  Sum_probs=32.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +|.+.|+||||++++||++|+++|+||...+..+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            3789999999999999999999999999998887

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.78  E-value=0.00018  Score=56.29  Aligned_cols=64  Identities=22%  Similarity=0.262  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.-     .+.+.++.+.+.|++
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHHHC
Confidence            5799999999999999999999999999999999964 677766666553     234455555554443

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.77  E-value=5.7e-05  Score=60.38  Aligned_cols=66  Identities=14%  Similarity=0.067  Sum_probs=44.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      .+|++.|+||||++++++++|+++|+||.+.+-.+  .++.+.-.+.+...+..    ...+.|++.|+...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~----~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESN----LDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCC----CCHHHHHHHHHHHH
Confidence            47899999999999999999999999999976664  34443333333311101    12355666665533

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.74  E-value=0.00016  Score=56.48  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +|+|.|+||||++++|+++|+++|+||.+.+..+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~   34 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTET   34 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeee
Confidence            3789999999999999999999999999988776

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.73  E-value=0.00015  Score=56.62  Aligned_cols=66  Identities=15%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.|+|.+.||||+|++|+.++.+.|++|.++++.+...+..  +.-.|.+.      +.+.+++.++.+.|++
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~--~~~~l~v~------V~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGT--ARITLTVE------VKDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTE--EEEEEEEE------ESSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCE--EEEEEEEE------ECCHHHHHHHHHHHHC
Confidence            568999999999999999999999999999999998211233  55555554      3456677777777653

>PRK00194 hypothetical protein; Validated

Probab=97.72  E-value=9.1e-05  Score=59.34  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +++++|.|+||||++++++++|+++|+||.+.+-.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~   38 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI   38 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence            568999999999999999999999999999955443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.66  E-value=0.0013  Score=64.24  Aligned_cols=67  Identities=10%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEE--ecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM--TTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~--T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .++.|++.|+||||+.+.|+++|+++|+||++...+  +..+.++ -.+.+.+...   ..-..+.+++.|..
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~---~~~~~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSA---EAASVDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCC---CCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999997  3233333 2333332111   11125667777776

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.65  E-value=0.0014  Score=64.00  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..++.|++.|+||||+.++|+++|+++||||.+.+.++. ..|.+.-.+.+.-.    +.+..++.+++.|..
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~----~~~~~~~~L~~~L~~   72 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD----GLIFNLETLRADFAA   72 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHH
Confidence            457899999999999999999999999999999999872 23444334444321    122337788888887

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.63  E-value=0.00053  Score=52.46  Aligned_cols=62  Identities=15%  Similarity=0.169  Sum_probs=47.5

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      |.+.+.||||+|++|+.++++.|.||.+....+..++.+.-.|.+.-     .+.+.++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-----~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-----PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-----CCHHHHHHHHHHHhc
Confidence            67899999999999999999999999998887755566554555543     245566667666665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.61  E-value=0.0096  Score=49.56  Aligned_cols=107  Identities=14%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccchhhh
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEIQ  190 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~~~~  190 (419)
                      .|.++..++||=|..++.+|.+.|+||..-.|.-+ +..-+--+.|..       |+.   -.+.    |...       
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~d~---A~~~----Lee~-------   62 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------PDE---AHSV----LEEA-------   62 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------hHH---HHHH----HHHC-------
Confidence            58889999999999999999999999997666542 222222223322       111   1111    2211       


Q ss_pred             ccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHH
Q 044730          191 LAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDILRTS  270 (419)
Q Consensus       191 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L  270 (419)
                                                                   ...|.+.+       ++-|...|+||=|..|+.+|
T Consensus        63 ---------------------------------------------gF~Vr~~d-------VlaVEmeD~PG~l~~I~~vl   90 (142)
T COG4747          63 ---------------------------------------------GFTVRETD-------VLAVEMEDVPGGLSRIAEVL   90 (142)
T ss_pred             ---------------------------------------------CcEEEeee-------EEEEEecCCCCcHHHHHHHH
Confidence                                                         01122222       78888999999999999999


Q ss_pred             HhCCceEEEEEEEEeecCceeE
Q 044730          271 KDLNIQIAYGRISSSVKGYRNM  292 (419)
Q Consensus       271 ~~~~~~I~~A~I~t~t~g~~~~  292 (419)
                      .++++|+.+...++. ..+.+.
T Consensus        91 ~d~diNldYiYAFv~-ek~KAl  111 (142)
T COG4747          91 GDADINLDYIYAFVT-EKQKAL  111 (142)
T ss_pred             hhcCcCceeeeeeee-cCceEE
Confidence            999999999888873 435554

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.58  E-value=0.0034  Score=61.33  Aligned_cols=66  Identities=14%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..+.|++.|+||||+.++|+++|+++|+||.+.+.++.. ++.+.-.+.+..+.+     .-.+.+++.|..
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~   72 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAP   72 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHH
Confidence            367899999999999999999999999999999998533 344444444443222     126778887777

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.57  E-value=0.0032  Score=61.36  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .|++.|+||||+.+.|+++|+++||||++.+.+... +|++.-.+.+.-+...    .-.+.+++.|..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence            689999999999999999999999999999999842 3666555555533211    125667777766

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.49  E-value=0.00015  Score=55.17  Aligned_cols=70  Identities=17%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCC-CCCCCHHHHHHHHHHHHHHh
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDG-KKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g-~~i~~~~~~~~l~~~L~~al  321 (419)
                      |++.++.||-.|||++-+|+.+++.|++|.|.....++..+++|.+. .++ ..+........+..++...+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999998766677888888765 443 34444444566666655543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.44  E-value=0.00017  Score=57.18  Aligned_cols=68  Identities=15%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG  181 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~  181 (419)
                      ...|+|.|+||||+.+.++++|+++|.||++-...- -+|++--.+.|.-+.    .....+.+++.|.....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISK----EVVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence            468999999999999999999999999999977655 577766566665421    12235667776666443

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.33  E-value=0.012  Score=48.95  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCC
Q 044730           23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSS  102 (419)
Q Consensus        23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (419)
                      |.|.--||+|=|.-+...|.+-|.+|+--.|---|. |=..--|+|.       ++.-.+-|+...      |.     |
T Consensus         6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d-FGIiRmvV~~-------~d~A~~~Lee~g------F~-----V   66 (142)
T COG4747           6 ISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD-FGIIRMVVDR-------PDEAHSVLEEAG------FT-----V   66 (142)
T ss_pred             EEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC-cceEEEEcCC-------hHHHHHHHHHCC------cE-----E
Confidence            567788999999999999999999999877765443 3333334333       334444444433      11     0


Q ss_pred             CCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          103 NSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       103 ~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                          ...-.+.+...|+||=++.|+++|.+.++|+-.+..+++.+.+++-+|.+.|
T Consensus        67 ----r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          67 ----RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             ----EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence                1133677778999999999999999999999999999988888876676654

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.33  E-value=0.01  Score=57.95  Aligned_cols=35  Identities=11%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRIS  283 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~  283 (419)
                      ..+|+|.|+||||++++++++|+++|+||.+.+-.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~   41 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF   41 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence            46799999999999999999999999999995554

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.33  E-value=0.0004  Score=55.11  Aligned_cols=68  Identities=18%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ..+|+|.++||||+.+.++++|+++|+||.+  |+..-..+.+.-.+.+.  -.+  +......++..|.++.+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~--~~~--~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVD--ISK--EVVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEc--CCh--HhccHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999  65411122222222332  111  12234667777766653

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.30  E-value=0.0013  Score=62.21  Aligned_cols=68  Identities=19%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +..+.+++.|+|+||+.+.|++.|+++||||.++.-++-. .|++.--........    +...+.+++.|..
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~   73 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAP   73 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999643 355432222222111    2346667777766

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.29  E-value=0.013  Score=57.40  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      .+++|+|.|+|||||+++|+++|+++|+||.+.+..+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~   41 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFV   41 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEE
Confidence            4678999999999999999999999999999977765

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.28  E-value=0.0031  Score=48.15  Aligned_cols=61  Identities=5%  Similarity=0.055  Sum_probs=43.6

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK  318 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  318 (419)
                      +.|.+.||||+|++|+.++++.|.||.+....+ ...+...-.|.+.     +.+.+.++.+.++|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ve-----v~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVE-QGRDYTVRDITVD-----APSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEE-ecCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence            678999999999999999999999999876654 2334444445554     223445666666654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.25  E-value=0.0091  Score=58.18  Aligned_cols=108  Identities=15%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC--CCeee
Q 044730          251 LLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH--PLRVM  328 (419)
Q Consensus       251 ~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~--~~~v~  328 (419)
                      +|+|.|+||||+++.|+++|+++|+||.+.+-+....++.+.-.+.+...+..+    ..+.|++.|.+++..  .+.+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence            689999999999999999999999999997666421223333223333222122    245566666652322  22232


Q ss_pred             eeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCce
Q 044730          329 VTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGIC  368 (419)
Q Consensus       329 ~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~  368 (419)
                      +.....      ...+=|.+..+.-=|.+|-.....-.++
T Consensus        78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~l~  111 (280)
T TIGR00655        78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGELD  111 (280)
T ss_pred             EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCCCC
Confidence            222211      1234444555555566666666555544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.22  E-value=0.003  Score=49.34  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      +.+.+..+|+||.|++|...|+++|+||.+.....  .+... ...+|||.-. |. .. .+..+++.+.|+.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p--~~~~~-~~~~f~vd~~-~~-~~-~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRP--SKGGL-WEYVFFIDFE-GH-IE-DPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEE--cCCCC-ceEEEEEEEE-CC-CC-CHHHHHHHHHHHH
Confidence            45777889999999999999999999999998666  33332 5588888533 43 23 2333455555554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK07431 aspartate kinase; Provisional

Probab=97.22  E-value=0.45  Score=51.33  Aligned_cols=296  Identities=16%  Similarity=0.158  Sum_probs=157.0

Q ss_pred             EEEE-eCCCCCchhHHHHHHHHhcCeEEEEEEeee-CCCeEEE-EEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccC
Q 044730           22 VVTV-NCPDKNGLGCDLCRIILEFGLFIVRGDFST-DGRWCYI-VLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFN   98 (419)
Q Consensus        22 ~v~v-~~~dk~Gll~d~~~~l~d~~l~I~k~~ist-dg~w~~d-vf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (419)
                      .|++ .-++++|.+..+-..|.+.|.+|---.-|+ .++ ..+ -|-|.+.+-      +.....++++.+....     
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~-~~~isf~i~~~d~------~~~~~~l~~l~~~~~~-----  339 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGN-SNDIAFTVAENEL------KKAEAVAEAIAPALGG-----  339 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCC-CccEEEEEeHHHH------HHHHHHHHHHHHHcCC-----
Confidence            3444 347889999999999999999987665432 222 122 233322211      1112222222211000     


Q ss_pred             CCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHH
Q 044730           99 QPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEH  175 (419)
Q Consensus        99 ~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~  175 (419)
                       ..+ ....+...|.++|.   +.+|+++++..+|++.++||..-.  + . +..+ .|.|.        ++..++.-+.
T Consensus       340 -~~i-~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~I-s~vv~--------~~d~~~av~~  404 (587)
T PRK07431        340 -AEV-LVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVKV-SCVID--------AEDGDKALRA  404 (587)
T ss_pred             -CcE-EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCEE-EEEEc--------HHHHHHHHHH
Confidence             000 12245678999985   899999999999999999997543  3 2 3222 23332        2234444455


Q ss_pred             HHHHhcccccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEE
Q 044730          176 MIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIK  255 (419)
Q Consensus       176 L~~vL~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~  255 (419)
                      |.+.+.-+.     .  .         ..+.+...                   + .. .++.--+.  ...+...|++.
T Consensus       405 Lh~~f~~~~-----~--~---------~~~~~~~~-------------------~-~~-~~~v~gIa--~~~~~~~i~l~  445 (587)
T PRK07431        405 VCEAFELED-----S--Q---------IEINPTAS-------------------G-QD-EPEVRGVA--LDRNQAQLAIR  445 (587)
T ss_pred             HHHHhccCC-----c--c---------cccCcccc-------------------C-CC-CCcEEEEE--ccCCEEEEEEC
Confidence            555553220     0  0         00111000                   0 00 11111111  12344455554


Q ss_pred             -ecCCccHHHHHHHHHHhCCceEEEEEEEEee-cCc--eeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeC
Q 044730          256 -CADQKGLFYDILRTSKDLNIQIAYGRISSSV-KGY--RNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTN  331 (419)
Q Consensus       256 -~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t-~g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~  331 (419)
                       .+++||+++++...|++++++|..  +.+.. .++  ...=.|.+...     +..+...+.+.|...+.. .++.+..
T Consensus       446 ~~~~~~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~~~  517 (587)
T PRK07431        446 NVPDRPGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVEDGP  517 (587)
T ss_pred             CCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEEeC
Confidence             568899999999999999999998  55411 111  12223444311     111222333333322211 1111111


Q ss_pred             CCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHH
Q 044730          332 RGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRI  408 (419)
Q Consensus       332 ~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i  408 (419)
                              ....|.+.|.   .+||+++++..+|.+.|+++....  |     . ...=.|+|...         ..++.
T Consensus       518 --------~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~-----S-~~~Is~vV~~~---------~~~~a  572 (587)
T PRK07431        518 --------AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T-----S-EIRTSCVVAED---------DGVKA  572 (587)
T ss_pred             --------CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c-----c-ceEEEEEEeHH---------HHHHH
Confidence                    2567888886   789999999999999999997644  3     2 03334666422         23566


Q ss_pred             HHHHHHHH
Q 044730          409 VEKVKKTL  416 (419)
Q Consensus       409 ~~~l~~~l  416 (419)
                      ..+|.+++
T Consensus       573 v~~Lh~~f  580 (587)
T PRK07431        573 LQAVHQAF  580 (587)
T ss_pred             HHHHHHHh
Confidence            66666665

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.16  E-value=0.002  Score=50.81  Aligned_cols=66  Identities=11%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      .+.+...|+||+|++||.+|++.|+||.+..++.  .-+.  ..-++-+.-..|    |+...++|..+|.|.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~--Te~~--~iSRmtivv~~~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH--SEQP--GISNMEIQVDIQ----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc--cCCC--CceEEEEEEeCC----CHHHHHHHHHHHhCCc
Confidence            6889999999999999999999999999999987  3355  555554442213    4455677777776654

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.14  E-value=0.0044  Score=46.42  Aligned_cols=62  Identities=21%  Similarity=0.124  Sum_probs=42.6

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC----CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP----DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~----~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +.+..+|+||+|++|+.+++++|+||.+.......    ++...-.|.+..     .+.+.++.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999988776532    355444444433     123445556555544

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.14  E-value=0.0018  Score=46.83  Aligned_cols=47  Identities=19%  Similarity=0.293  Sum_probs=40.1

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                      |.+..+|+||.+++++.+|.++|+||.+..++...++..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999998865477777777665

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.11  E-value=0.0025  Score=49.45  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=46.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ..+.+...++||+|++|+.+|+..|.||.+..++-  ..+.  ..-.+-++-. |    ++....+|..+|.|.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~--te~~--~~sriti~~~-~----~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE--RDTS--GVSEMKLTAV-C----TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc--cCCC--CeeEEEEEEE-C----CHHHHHHHHHHHhCC
Confidence            36899999999999999999999999999998875  3344  3334433311 2    234446677766654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.08  E-value=0.0037  Score=48.10  Aligned_cols=34  Identities=21%  Similarity=0.464  Sum_probs=32.1

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEe
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMT  144 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T  144 (419)
                      .|.|.+.||+|++++|+.++++.|.||.+.++.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~   35 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP   35 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence            4789999999999999999999999999999976

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.03  E-value=0.016  Score=56.76  Aligned_cols=35  Identities=11%  Similarity=0.099  Sum_probs=32.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRIS  283 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~  283 (419)
                      +.+|+|.|+|||||++.|+.+|+++|+||.+.+-.
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            56899999999999999999999999999996654

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.99  E-value=0.0061  Score=49.29  Aligned_cols=68  Identities=12%  Similarity=0.306  Sum_probs=50.2

Q ss_pred             CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      +.....|.+...|+||.|++|++.|+..|.||.+-.+--+.+...-=+..+..      +.+.+++|.++|...
T Consensus         5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~------~~~~i~Qi~kQL~KL   72 (96)
T PRK08178          5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN------DDQRLEQMISQIEKL   72 (96)
T ss_pred             CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc------CchHHHHHHHHHhCC
Confidence            34456799999999999999999999999999998877655543222222322      135788888888873

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.97  E-value=0.0031  Score=45.56  Aligned_cols=47  Identities=19%  Similarity=0.319  Sum_probs=39.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      +++...|+||.|.+++.+|.++|+||.+..+.... +++  +.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~--~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEF--GILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCc--EEEEEEECC
Confidence            35788999999999999999999999999988733 466  877887765

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.94  E-value=0.0068  Score=45.44  Aligned_cols=34  Identities=24%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      .+.|..+|+||.|++|+.+|.++|+||.+.-+..
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~   36 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIAD   36 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe
Confidence            5788999999999999999999999999998877

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.94  E-value=0.0047  Score=55.75  Aligned_cols=66  Identities=11%  Similarity=0.171  Sum_probs=46.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      ..+.+.+.||||+|++||.+|+++|+||.+..+..-.  ..  ....+-+.-+.+     +...++|+++|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~--~~--~~sr~TIvv~~~-----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAE--QK--GISRITMVVPGD-----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcC--CC--CccEEEEEEECC-----HHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999997622  23  333554442221     222466777666654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.93  E-value=0.0029  Score=48.68  Aligned_cols=59  Identities=17%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+++.+.||+|+|++|+.+|++.|++|.+.++.+  .  .  -   ++++    -.+.+.+++..+.++|++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~--~--~--~---i~l~----i~v~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP--K--G--R---IYLN----FPTIEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec--C--C--e---EEEE----eEecCHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999877  2  2  2   2222    112345566677766653

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.93  E-value=0.0071  Score=46.26  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchh-HHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQ-RREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~-r~~~i~~~L~~  178 (419)
                      .|.+.++|+||++++|+.+|+++|.||......+.++|.+--.|.+...     +.+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence            5789999999999999999999999999987755345654444555431     222 45555555554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.89  E-value=0.0044  Score=50.09  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ...|.+...|+||+|++|+..|++.|.||.+..++-  .++.  ..-++.+.-. +     ++..++|..+|.|.
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~--te~~--~iSRmtivv~-~-----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP--IQDG--DKSRIWLLVN-D-----DQRLEQMISQIEKL   72 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee--cCCC--CceEEEEEEc-C-----chHHHHHHHHHhCC
Confidence            457999999999999999999999999999998876  5555  4455554322 2     23456777776654

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.88  E-value=0.0081  Score=48.30  Aligned_cols=69  Identities=10%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      .+.+-+..+|+||-|+++-..|+++|+|+.+.+...  ...+. -.+.|||. -+|.  .++.. +++.+.|++.|
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~-~~Y~FfVD-ieg~--~~~~~-~~~l~~L~~~~   82 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNK-DEYEFFIN-LDKK--SAPAL-DPIIKSLRNDI   82 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEEE-EEcC--CCHHH-HHHHHHHHHHh
Confidence            366777779999999999999999999999988866  43443 45899996 4454  23333 55556666654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.87  E-value=0.01  Score=44.60  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT  145 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~  145 (419)
                      +.+.+..+|+||.|++++..|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            468889999999999999999999999998877764

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.86  E-value=0.0082  Score=46.62  Aligned_cols=64  Identities=6%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..|.+...|+||.|++|+++|+..|+||.+-.+--+.+....-+..+...     ++..+++|.++|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999988875454433323222221     35667888888876

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.79  E-value=0.01  Score=52.79  Aligned_cols=64  Identities=14%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      .|++...|+||.|++|+++|+..|+||.+-.+..+. .|..--+|.|..      +...++++.++|....
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            688999999999999999999999999999888765 455554555543      3556888888888743

acetohydroxyacid synthase is a synonym.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.78  E-value=0.0089  Score=44.36  Aligned_cols=47  Identities=23%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      +.+.+.|+||+|++|+.+|+++|++|.+..+..+..++.  ..-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~--~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGI--AYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCE--EEEEEEcC
Confidence            678899999999999999999999999999877221133  55666663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.0068  Score=57.54  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=33.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      ..+++++.|+|+|||++.|++.|+.+|+||.++.-++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~   42 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD   42 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence            4578999999999999999999999999999977664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.77  E-value=0.013  Score=43.95  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD  147 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~  147 (419)
                      ..+.+..+|+||.|++++..|+++|+||.+..++...+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~   39 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE   39 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence            36788999999999999999999999999998877433

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.77  E-value=0.011  Score=52.68  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ..|++...|+||.|++|+++|+.+|+||.+-.+..+. +|..--+|.|..      +...++++..+|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence            4688999999999999999999999999998887755 455544555543      3566888988888743

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.73  E-value=0.0081  Score=53.39  Aligned_cols=65  Identities=15%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      .+.+...|+||.|++|+.+|+++|+||.+.-+..  .++.....-+|.+.   |    ++...+++..+|.|.+
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~--t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP--TEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee--cCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCc
Confidence            6899999999999999999999999999998877  43442233344443   2    2344566777766543

acetohydroxyacid synthase is a synonym.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.73  E-value=0.013  Score=45.59  Aligned_cols=63  Identities=10%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..|.+...|+||.|++++++|+..|+||.+-.+-.+.++...-+-.+..      ++..++.|.++|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~------~~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA------SERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC------CCchHHHHHHHHhc
Confidence            4789999999999999999999999999999998766665444433333      23457888888877

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.72  E-value=0.013  Score=43.86  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT  157 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~  157 (419)
                      .|.+.++|+||.|++++..|+++++||.+....+..++...-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887763345543334443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.68  E-value=0.011  Score=46.68  Aligned_cols=65  Identities=14%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      .|.+...|+||.|++|++.|+..|+||.+-.+-.+.+..+--+-.+...    .++.-+++|.++|.+.
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~----~d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI----QDDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC----CCHHHHHHHHHHHhCC
Confidence            6889999999999999999999999999998887665433333222220    1356678888888773

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.67  E-value=0.021  Score=42.95  Aligned_cols=63  Identities=24%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      ..+.+..+|+||.|+++++.|+++|++|..........+..  ..-.|.++..        ...+++.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~--~~~~i~v~~~--------~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIG--GILRISFKTQ--------EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCc--EEEEEEECCH--------HHHHHHHHHHHH
Confidence            35788999999999999999999999999887766321212  3445666522        123556666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.67  E-value=0.0084  Score=46.57  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ..+.+...++||+|++|+.+|+..|.||.+..+..  ..+....--++-+ + +..+      .++|..+|.|.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~--t~~~~~sriti~v-~-~~~~------i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ--NTDAQNINIELTV-A-SERP------IDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee--cCCCCEEEEEEEE-C-CCch------HHHHHHHHhcC
Confidence            47899999999999999999999999999999977  3333223333444 2 3323      35666666654

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.66  E-value=0.014  Score=44.25  Aligned_cols=63  Identities=17%  Similarity=0.252  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      -|.+.+.|+||++++++.+|+++|+||.+....+..+ +.+ .+..++..    .+.+.++.+.+.|++
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~-~~~i~~~~----~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETA-PVVIVTHE----TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCce-eEEEEEcc----CCHHHHHHHHHHHHc
Confidence            4788999999999999999999999999887755334 433 33333331    133444445455443

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.63  E-value=0.0087  Score=44.41  Aligned_cols=45  Identities=18%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEE
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFI  156 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V  156 (419)
                      +.+.+.|+||++++++.+|+++|+||.+..+.... ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999988743 3666666666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.60  E-value=0.015  Score=52.47  Aligned_cols=65  Identities=12%  Similarity=0.199  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEE-EEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVL-DLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~-d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ..|.+.+.|+||++++|+++|+..|.||.+-.+..+.+.... ..+.+..      +...+++|.++|....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999998765544332 2233221      2333888999888844

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.56  E-value=0.021  Score=43.58  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH-HHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ-ARNRIVEKVKK  414 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~-~~~~i~~~l~~  414 (419)
                      .+.+.+.||||+|++|+++|++.|++|......+.. +..  +.-.|-+.-.      +.+ +++++.++|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~--~~i~~~v~v~------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGR--ANVTISIDTS------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCe--EEEEEEEEcC------chHHHHHHHHHHHhc
Confidence            478999999999999999999999999998775511 123  5555666432      233 55667777664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.56  E-value=0.021  Score=43.30  Aligned_cols=34  Identities=29%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      .+.+.+.||||+|.+|+.+|.++|++|......+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~   35 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKE   35 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcc
Confidence            4788999999999999999999999999988765

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.56  E-value=0.024  Score=42.19  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=44.3

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .|.+.+.|+||++++++.+|++++.||.+....+. .++.+.-.|.+..     .+ ..++.+.+.|+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence            36788999999999999999999999999988774 3455443444432     12 445556555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.54  E-value=0.023  Score=42.25  Aligned_cols=63  Identities=14%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.+.+.|+||+|.+|+.+|+++|++|.+....+.. ++. .+.-.|.+...      + .+.+++.++|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~-~~~~~~~~~~~------~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTE-DPG-ISRITIVVEGD------D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecC-CCC-eEEEEEEEECC------H-HHHHHHHHHHhC
Confidence            478899999999999999999999999999887721 233 13334444321      1 334566666653

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.53  E-value=0.02  Score=51.06  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      ..+.+...|+||.|++|+.+|+++|+||.+..+..  ..+.....-+|.+.   |    ++...+++..+|.|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~--te~~~~sriti~V~---~----~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP--TEDPGLSRMTIVTS---G----DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee--cCCCCEEEEEEEEE---C----CHHHHHHHHHHHhccc
Confidence            36899999999999999999999999999988766  33342233334343   2    2344566776666543

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.49  E-value=0.021  Score=42.45  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +.+.+.||||.|.+|+.+|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999887765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.48  E-value=0.018  Score=44.37  Aligned_cols=63  Identities=10%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      +-+...|+||-|++|-..|+.+|+|+.+.+...  ...+. -.+.|||+ -+|   .++. .+++.+.|.+
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP--~~~~~-~~y~Ffvd-~~~---~~~~-~~~~l~~L~~   65 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP--SRRNG-SEYEFFVD-CEV---DRGD-LDQLISSLRR   65 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC--CCCCC-ceEEEEEE-EEc---ChHH-HHHHHHHHHH
Confidence            445558999999999999999999999888765  43443 56899995 445   2222 3444455543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.40  E-value=0.025  Score=41.97  Aligned_cols=46  Identities=22%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEe
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFIT  157 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~  157 (419)
                      |.+.++|+||.+++++..|+++|+||.+....... ++...-.|.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~   48 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD   48 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence            57889999999999999999999999988877632 35543334443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.36  E-value=0.036  Score=47.96  Aligned_cols=71  Identities=17%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+....+.|.+.+.|+||+|++|+.+|++++.||.+....+.. ++.+...|.+.-+..    ...++.+.+.|++
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK  122 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence            3444578999999999999999999999999999998887754 444433444432111    1345666666655

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.35  E-value=0.043  Score=42.73  Aligned_cols=67  Identities=16%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +.+.+..+|+||-|+++..+|+++|+||.+-......++...-.|+|.-...  .+.+....+-+.|+.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence            3567778999999999999999999999998877654545545677654321  233444444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11899 prephenate dehydratase; Provisional

Probab=96.31  E-value=0.018  Score=56.09  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQA  404 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~  404 (419)
                      -|.+-+..+|+||.|+++-.+|+++|||+.+.+..-  .+.+. -.++|||+ .+|.. .++..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP--~~~~~-~~Y~F~id-~eg~~-~d~~v  252 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYM--VGGSF-TATQFYAD-IEGHP-EDRNV  252 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee--cCCCC-ceEEEEEE-EECCC-CCHHH
Confidence            466777778999999999999999999999988865  54554 48999995 55643 44443

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.31  E-value=0.019  Score=43.36  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEec
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITD  158 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~  158 (419)
                      +.+..+|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4568999999999999999999999998877654 3466666666654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.28  E-value=0.033  Score=38.19  Aligned_cols=47  Identities=34%  Similarity=0.499  Sum_probs=36.3

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                      |.+.++|++|++++++++|.+++++|.........+.....+++..+
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD   47 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence            46889999999999999999999999999887643333344444443

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.26  E-value=0.021  Score=42.09  Aligned_cols=33  Identities=15%  Similarity=0.019  Sum_probs=29.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +.+.-+||||-|++++.+|.++|+||.+.....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~   34 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV   34 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence            677889999999999999999999999887755

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.25  E-value=0.024  Score=41.68  Aligned_cols=45  Identities=24%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEE
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFI  156 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V  156 (419)
                      +.+.-+|+||-|++++.+|+++|+||.+...+... .+...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67788999999999999999999999988776533 2454334444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.23  E-value=0.019  Score=42.79  Aligned_cols=62  Identities=19%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeC-----CCeEEEEEEEEcCCCCCCCCHHHHHHHHHhh
Q 044730           23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTD-----GRWCYIVLWVVPDASSDKVDWESLKNRLLSV   87 (419)
Q Consensus        23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istd-----g~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~   87 (419)
                      +.|..+|++|+|.+++++|.+.|..|.....+.+     .+.....|.|.-. +.  .+.+.+...|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-~~--~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GA--EHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-CH--HHHHHHHHHHHHc
Confidence            3678899999999999999999999998887764     2334444555432 21  2334555555543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.22  E-value=0.023  Score=42.89  Aligned_cols=46  Identities=24%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      -+...|+||.+++|+..|+++|++|.+........++.  +.-+|-+.
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v~   48 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSVD   48 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEeC
Confidence            45889999999999999999999999888765322344  55555554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.21  E-value=0.039  Score=42.34  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             EEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          346 LCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       346 v~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      +.-.|+||-|++|...|+++|+||.+.+... ..+..  ..+.||++ -+|. .. +...+++.+.|++.
T Consensus         4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp-~~~~~--~~~~f~id-~~~~-~~-~~~~~~~l~~l~~~   67 (75)
T cd04880           4 FSLKNKPGALAKALKVFAERGINLTKIESRP-SRKGL--WEYEFFVD-FEGH-ID-DPDVKEALEELKRV   67 (75)
T ss_pred             EEeCCcCCHHHHHHHHHHHCCCCEEEEEeee-cCCCC--ceEEEEEE-EECC-CC-CHHHHHHHHHHHHh
Confidence            4457999999999999999999999986554 22334  77889885 3342 12 23335566666553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK08577 hypothetical protein; Provisional

Probab=96.17  E-value=0.09  Score=45.49  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=40.0

Q ss_pred             CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe
Q 044730          245 LSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ  298 (419)
Q Consensus       245 ~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~  298 (419)
                      +....+.+.|.+.|+||+|++++.+|++++++|.+....+...++.+.-.|.+.
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            444578899999999999999999999999999986655422233333334444

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.12  E-value=0.04  Score=41.90  Aligned_cols=62  Identities=21%  Similarity=0.301  Sum_probs=42.0

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec--CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT--PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~--~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +.+.-+|+||-|++++..|+++|.||.+......  ..+.....+.+... .    +..++.|.+.|++
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e-~----~~~~~~i~~~L~~   65 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPM-D----RSKENELIEELKA   65 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEe-c----chHHHHHHHHHhC
Confidence            5778899999999999999999999998866553  23444444554431 1    2235555555543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.10  E-value=0.065  Score=38.67  Aligned_cols=46  Identities=30%  Similarity=0.402  Sum_probs=35.6

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT  157 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~  157 (419)
                      |.+.++|+||.+++++..|.+++++|.+..+....++...-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            4678999999999999999999999999988764334443334443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=96.10  E-value=0.061  Score=47.32  Aligned_cols=70  Identities=20%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             CCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCch-hHHHHHHHHHHH
Q 044730          104 SSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTK-QRREETCEHMIA  178 (419)
Q Consensus       104 ~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~-~r~~~i~~~L~~  178 (419)
                      ...+....|.+...|+||+|++|+.+|+++|+||.........+|.+--.|.+...     +. ..++.+-+.|++
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-----~~~~~L~~Li~~L~~  134 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-----SMEGDIDELLEKLRN  134 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-----ChHHHHHHHHHHHHc
Confidence            34456789999999999999999999999999999887765446765445555432     12 245555555554

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.09  E-value=0.042  Score=40.92  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=31.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      .+.+...|+||.|++|+..|++++++|.+....+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~   35 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFI   35 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEec
Confidence            4778899999999999999999999999888766

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.07  E-value=0.062  Score=40.50  Aligned_cols=49  Identities=18%  Similarity=0.288  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      +.+.+.-+|+||.|.+++.+|.++|++|.+........++.  ..-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~--~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDN--KILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCe--EEEEEEEe
Confidence            46888999999999999999999999999886544211222  44555554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=96.03  E-value=2.8  Score=45.20  Aligned_cols=188  Identities=13%  Similarity=0.073  Sum_probs=106.4

Q ss_pred             EEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccchhh
Q 044730          111 LLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISCEI  189 (419)
Q Consensus       111 ~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~~~  189 (419)
                      .+++.+ .+++|++++|...|+++|+||.--.......+..--.|.+..        +.+.+..+.|++ +....     
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~~~-----  337 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAPAL-----  337 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHHHc-----
Confidence            455543 688999999999999999999866443322222211344432        223333333433 22110     


Q ss_pred             hccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCccHHHHH
Q 044730          190 QLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKGLFYDI  266 (419)
Q Consensus       190 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLl~~i  266 (419)
                      .                                             ...+.+.    .+...|.|.+.   ++||+++++
T Consensus       338 ~---------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki  368 (587)
T PRK07431        338 G---------------------------------------------GAEVLVE----TNVAKLSISGAGMMGRPGIAAKM  368 (587)
T ss_pred             C---------------------------------------------CCcEEEe----CCeEEEEEECCCcccCccHHHHH
Confidence            0                                             0012222    24557888885   799999999


Q ss_pred             HHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCC-eeeeeC---C--CCC----C
Q 044730          267 LRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPL-RVMVTN---R--GPD----T  336 (419)
Q Consensus       267 ~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~-~v~~~~---~--~~~----~  336 (419)
                      ..+|++.+++|..  +.+  .....  .|.+.        +...++..+.|...+.... +..+.+   +  +..    .
T Consensus       369 ~~aL~~~~I~i~~--i~s--Se~~I--s~vv~--------~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa  434 (587)
T PRK07431        369 FDTLAEAGINIRM--IST--SEVKV--SCVID--------AEDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVA  434 (587)
T ss_pred             HHHHHHCCCcEEE--EEc--CCCEE--EEEEc--------HHHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEE
Confidence            9999999999987  443  11212  24553        2233444555555552211 111110   0  000    0


Q ss_pred             CCCcceEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEe
Q 044730          337 ELLVANPVELC-GKGRPRVFYDVTLALKALGICIFSAEIG  375 (419)
Q Consensus       337 ~~~~~t~lev~-~~DRpGLL~~It~~L~~~gl~I~~A~I~  375 (419)
                      .......|.|. ..++||++++|...|.++|++|.....+
T Consensus       435 ~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        435 LDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            01123345543 3578999999999999999999987543

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.86  E-value=0.011  Score=44.28  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=34.9

Q ss_pred             EEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730          112 LKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT  157 (419)
Q Consensus       112 i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~  157 (419)
                      +.+.+.|+||++++++.+|++.|+||.+....+ .+|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcC
Confidence            567899999999999999999999998876554 335554444443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.64  E-value=0.049  Score=42.09  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      +-+..+|+||-|+++-..|+.+|+|+.+.+...  ..... -.+.|||+ -+|..    ...+++.+.|++
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~-~~y~F~id-~e~~~----~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRS-SEFEIFVD-CECDQ----RRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEEE-EEcCH----HHHHHHHHHHHH
Confidence            445568999999999999999999999888866  43443 56899995 34543    133445555544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.60  E-value=0.072  Score=40.44  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=30.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +.+.-+||||-|++++..|+++|+||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            577889999999999999999999999887665

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.55  E-value=0.019  Score=42.92  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=34.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      +-+.+.||||+|.+|+.+|.+.|+||......+  .+..  +.-.|-+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcC
Confidence            345789999999999999999999998876655  3333  54445443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.47  E-value=0.039  Score=41.19  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe-cCCCCCCCCHHHHHHHHHHHHHH
Q 044730          350 GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD-ESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       350 DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~-d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      |+||+|.+|+.+|+..|+||.+..++.  ..+.  ....+.++ +.+..+      .++|..+|.|.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~--~~~~--~~~riti~v~~~~~~------i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGP--TEDP--GISRITIVVSGDDRE------IEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE---SST--TEEEEEEEEES-CCH------HHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeee--cCCC--CEEEEEEEEeeCchh------HHHHHHHHhcc
Confidence            689999999999999999999999988  3344  33334332 222222      35566666654

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.23  E-value=0.076  Score=39.63  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=39.6

Q ss_pred             CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          118 DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       118 DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      |+||.|.+|+++|...|+||.+-.+..+.++...-+..+...     ++...+.|..+|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-----~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-----DDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-----CchhHHHHHHHHhc
Confidence            789999999999999999999999988665544444333331     23356778777776

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.23  E-value=0.21  Score=40.13  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=47.9

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730          247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      ...+.+.+..+|+||-|+++...|+++|+|+.+  |.++..... ..=.|++..+|.  .+ ...+.+.+.|...|
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~   82 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDI   82 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHh
Confidence            344566666799999999999999999999998  776543232 233577876665  23 34455556665555

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.19  E-value=0.12  Score=53.17  Aligned_cols=67  Identities=12%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeeccc--CCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHST--SHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~--Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.|+|.+.||||+|++|+.+|++.++||.+....+...  .+. .+.-.|-+.      +.+.++++++..+|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~-~~~i~l~i~------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAK-GAELELVIE------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCC-eEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            368999999999999999999999999999998876200  122 133334332      3356677888888876

>PRK06635 aspartate kinase; Reviewed

Probab=95.13  E-value=0.8  Score=46.91  Aligned_cols=106  Identities=19%  Similarity=0.141  Sum_probs=65.4

Q ss_pred             eEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEee-cCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc--CC
Q 044730          249 HTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSSV-KGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML--HP  324 (419)
Q Consensus       249 ~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t-~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~--~~  324 (419)
                      ...|++. -.++||+++++..+|++.|++|..  +.+.. .++...=.|.+..        +..+...+.|.+...  ..
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVPR--------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEcH--------HHHHHHHHHHHHHHHHcCc
Confidence            4455554 367899999999999999999997  54411 1112232344431        122333333443110  10


Q ss_pred             CeeeeeCCCCCCCCCcceEEEEEe---CCCcchHHHHHHHHHhCCceEEEE
Q 044730          325 LRVMVTNRGPDTELLVANPVELCG---KGRPRVFYDVTLALKALGICIFSA  372 (419)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~lev~~---~DRpGLL~~It~~L~~~gl~I~~A  372 (419)
                      ..+.+.        .....+.+.+   .++||++++|.++|.+.|++|...
T Consensus       332 ~~i~~~--------~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        332 ESVTYD--------DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             ceEEEc--------CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            011111        1256788877   589999999999999999999874

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.13  E-value=0.17  Score=36.40  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          344 VELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       344 lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +.+.+.|+||++.+++..|.+++++|....+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRT   33 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEE
Confidence            467889999999999999999999999998877

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK06291 aspartate kinase; Provisional

Probab=95.11  E-value=2  Score=44.94  Aligned_cols=134  Identities=19%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-
Q 044730          248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH-  323 (419)
Q Consensus       248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~-  323 (419)
                      +.+.|+|.+.   +.||+++++..+|+++|++|..  |...+. + ..=.|.+..        +..++..+.|...+.. 
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~ss-e-~sIsf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQGSS-E-SNISLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEecCC-C-ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            4567888765   7899999999999999999987  543111 1 222345542        1222333444443321 


Q ss_pred             -CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730          324 -PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL  399 (419)
Q Consensus       324 -~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l  399 (419)
                       ...+.+.+        ....|.+.|.   +++|++.++..+|.+.|++|....-++..      ..-.|.|...     
T Consensus       388 ~~~~i~~~~--------~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe------~~Is~vV~~~-----  448 (465)
T PRK06291        388 LVRDVTFDK--------DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSE------VNISFVVDEE-----  448 (465)
T ss_pred             cCcceEEeC--------CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecccc------CeEEEEEeHH-----
Confidence             11121111        2457888886   69999999999999999999865544411      3344556422     


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 044730          400 ASSQARNRIVEKVKKTL  416 (419)
Q Consensus       400 ~~~~~~~~i~~~l~~~l  416 (419)
                          ..++...+|.+++
T Consensus       449 ----d~~~av~~Lh~~f  461 (465)
T PRK06291        449 ----DGERAVKVLHDEF  461 (465)
T ss_pred             ----HHHHHHHHHHHHh
Confidence                2255566666654

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.11  E-value=0.19  Score=37.80  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=36.8

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEe
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFIT  157 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~  157 (419)
                      +.+.+..+|+||.+++++.+|+++|+||.+....-. ..+...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            468889999999999999999999999998765432 234544455554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.07  E-value=0.14  Score=52.65  Aligned_cols=65  Identities=22%  Similarity=0.152  Sum_probs=48.4

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec----CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT----PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|.|.+.||||+|++|+.+|++.+.||.+....+.    .++.+.-.|.+.-     .+.+.++++.+.|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999988763    3555433444432     135556666666665

>PRK06635 aspartate kinase; Reviewed

Probab=95.05  E-value=2.4  Score=43.41  Aligned_cols=108  Identities=15%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             eeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730          109 LYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC  187 (419)
Q Consensus       109 ~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~  187 (419)
                      ...|++.+ .++||.+++++.+|++.|+||.-.......+|..--.|.|.        .+..++..+.|.+ +...    
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~-~~~~----  328 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEE-VKDE----  328 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHH-HHHH----
Confidence            34566665 68899999999999999999996433322222332234443        2223333344443 2111    


Q ss_pred             hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEe---cCCccHHH
Q 044730          188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKC---ADQKGLFY  264 (419)
Q Consensus       188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~DrpGLl~  264 (419)
                       +.                                             ...|.+.    .+...+.|.+   +++||.++
T Consensus       329 -~~---------------------------------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a  358 (404)
T PRK06635        329 -IG---------------------------------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAA  358 (404)
T ss_pred             -cC---------------------------------------------cceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence             00                                             0011111    2345677766   68999999


Q ss_pred             HHHHHHHhCCceEEE
Q 044730          265 DILRTSKDLNIQIAY  279 (419)
Q Consensus       265 ~i~~~L~~~~~~I~~  279 (419)
                      ++..+|++.|+||..
T Consensus       359 ~i~~~La~~~Ini~~  373 (404)
T PRK06635        359 KMFEALAEEGINIQM  373 (404)
T ss_pred             HHHHHHHHCCCCEEE
Confidence            999999999999987

>PLN02551 aspartokinase

Probab=95.02  E-value=0.9  Score=48.24  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=75.6

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+-+.|+|.+.   +.||+++++...|+++|++|..  |.+ +  + ..=.|.+..+.  +...+.+++..+.+...+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Iss-S--e-~sIs~~v~~~~--~~~~~~i~~~l~~l~~el~~  435 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VAT-S--E-VSISLTLDPSK--LWSRELIQQELDHLVEELEK  435 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eec-c--C-CEEEEEEehhH--hhhhhhHHHHHHHHHHHhhc
Confidence            34567888765   6899999999999999999998  654 2  2 22235555211  11111111111122222332


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK--GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ...+.+..        ....|.|.|.  .+||+++++..+|.+.|++|.....++    ..  ..-.|.|.+.
T Consensus       436 ~~~V~v~~--------~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----Se--inIS~vV~~~  494 (521)
T PLN02551        436 IAVVNLLQ--------GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SK--VNISLIVNDD  494 (521)
T ss_pred             CCeEEEeC--------CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CC--cEEEEEEeHH
Confidence            21222211        2456777765  689999999999999999998766555    11  4445666543

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=94.89  E-value=0.13  Score=34.99  Aligned_cols=48  Identities=25%  Similarity=0.264  Sum_probs=39.4

Q ss_pred             EEEeCCCCCchhHHHHHHHHhcCeEEEEEEeeeC-CCeEEEEEEEEcCC
Q 044730           23 VTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTD-GRWCYIVLWVVPDA   70 (419)
Q Consensus        23 v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~istd-g~w~~dvf~v~~~~   70 (419)
                      |.+.++|++|++.++.++|.+.++.|.+...++. +.|...++.+++..
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   49 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGD   49 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEech
Confidence            4688999999999999999999999999998884 35556666665553

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.89  E-value=0.26  Score=37.60  Aligned_cols=64  Identities=16%  Similarity=0.092  Sum_probs=41.7

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCc-eeEeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGY-RNMDLFIRQTDGKKVVDPKQQTALCFHLKE  319 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~-~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~  319 (419)
                      +.+..+|+||-|+++...|+++|+||.+  |.+....+ ...-.|++..+|.. . +...+.+.+.|++
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~-~-~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI-D-DPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC-C-CHHHHHHHHHHHH
Confidence            3455589999999999999999999999  65543222 33334666655531 1 2345555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.85  E-value=2.2  Score=43.69  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-
Q 044730          248 AHTLLQIK---CADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH-  323 (419)
Q Consensus       248 ~~t~v~V~---~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~-  323 (419)
                      +...|+|.   -.++||+++++..+|.+.+++|..  +.+ ...+ ..=.|.+..        +..+++.+.|...... 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSE-TSISLTVDE--------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCC-ceEEEEEeH--------HHHHHHHHHHHHHHHhc
Confidence            45678888   468899999999999999999987  543 1111 111245531        1233334444443311 


Q ss_pred             C-CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044730          324 P-LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFS  371 (419)
Q Consensus       324 ~-~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~  371 (419)
                      . ..+....        ....|.|.|.   ++||+++++.++|.+.|++|..
T Consensus       327 ~~~~i~~~~--------~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       327 GLDRVEVEE--------GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CCceEEEeC--------CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            1 1111111        2457888886   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=94.85  E-value=3.5  Score=42.98  Aligned_cols=133  Identities=19%  Similarity=0.182  Sum_probs=81.3

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+.+.|+|.+.   ..+|.++++...|.++|++|..  |.+. .+. ..=.|.+...        ...+..+.|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~~-~~i~~~v~~~--------~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-ISE-VSISFTVPES--------DAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cCC-CeEEEEEchh--------hHHHHHHHHHHHHhh
Confidence            45677777764   3459999999999999999988  6542 112 2233555411        112222333333321


Q ss_pred             CC-eeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCC
Q 044730          324 PL-RVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPL  399 (419)
Q Consensus       324 ~~-~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l  399 (419)
                      .. ++.+..        ....|.+.|.   ..||+.+++..+|++.++||....  +    ..  ..-.|.|.+.+.   
T Consensus       373 ~~~~v~~~~--------~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s----Se--~~Is~vV~~~~~---  433 (447)
T COG0527         373 LLAEVEVEE--------GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S----SE--ISISFVVDEKDA---  433 (447)
T ss_pred             hcceEEeeC--------CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c----CC--ceEEEEEccHHH---
Confidence            11 121111        1346777766   679999999999999999999876  3    11  556677764433   


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 044730          400 ASSQARNRIVEKVKKTL  416 (419)
Q Consensus       400 ~~~~~~~~i~~~l~~~l  416 (419)
                            .+....|.+++
T Consensus       434 ------~~av~~LH~~~  444 (447)
T COG0527         434 ------EKAVRALHEAF  444 (447)
T ss_pred             ------HHHHHHHHHHH
Confidence                  55556666654

>PRK04435 hypothetical protein; Provisional

Probab=94.84  E-value=0.29  Score=43.02  Aligned_cols=73  Identities=15%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             EEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730          241 VDNLLSPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK  318 (419)
Q Consensus       241 v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  318 (419)
                      +..........+.+...|+||+|++|..+|+++|+||..-.... ..++.+.-.|.+...+    ....++.|.++|+
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~----~~~~L~~Li~~L~  133 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSS----MEGDIDELLEKLR  133 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCC----hHHHHHHHHHHHH
Confidence            34444556778999999999999999999999999999843332 1234344345454211    0224556555554

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.43  E-value=0.14  Score=43.17  Aligned_cols=53  Identities=8%  Similarity=-0.050  Sum_probs=41.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCC
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEF  397 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~  397 (419)
                      .|.+-+..+|+||-|++|-..|+.+|||+.+.+...  .+.+.| .+.|||. -+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~~-eY~FfId-ieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEGG-DLEVLVR-CEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCCc-eEEEEEE-EEeC
Confidence            456777779999999999999999999999888766  545543 5888885 3453

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=94.11  E-value=4.3  Score=41.60  Aligned_cols=127  Identities=18%  Similarity=0.277  Sum_probs=77.8

Q ss_pred             CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCe
Q 044730          248 AHTLLQIKCADQ-KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLR  326 (419)
Q Consensus       248 ~~t~v~V~~~Dr-pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~  326 (419)
                      +-..|+|...+. ||.+++|..+|+++|+||..  +.+ .. .  .=.|.+..        +..+++.+.|.. +.  ..
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~-~~-~--~is~~v~~--------~~~~~a~~~l~~-~~--~~  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INI-FP-T--EVVFTVSD--------EDSEKAKEILEN-LG--LK  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEe-cC-c--eEEEEEcH--------HHHHHHHHHHHH-hC--Cc
Confidence            445677766555 99999999999999999998  443 11 1  11244431        123333333333 11  11


Q ss_pred             eeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730          327 VMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ  403 (419)
Q Consensus       327 v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~  403 (419)
                      +.+..        ....|.|.|.   ++||+++++..+|.+.|++|..  ++|.   +   ..-.|.|...         
T Consensus       333 v~~~~--------~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s---~---~~is~vv~~~---------  387 (403)
T PRK08210        333 PSVRE--------NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADS---H---TTIWVLVKEE---------  387 (403)
T ss_pred             EEEeC--------CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecC---C---CEEEEEEcHH---------
Confidence            22111        2457888886   7999999999999999999975  4441   1   3345666432         


Q ss_pred             HHHHHHHHHHHHH
Q 044730          404 ARNRIVEKVKKTL  416 (419)
Q Consensus       404 ~~~~i~~~l~~~l  416 (419)
                      ..++..+.|.+++
T Consensus       388 ~~~~a~~~Lh~~f  400 (403)
T PRK08210        388 DMEKAVNALHDAF  400 (403)
T ss_pred             HHHHHHHHHHHHh
Confidence            2355666666654

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.00  E-value=0.27  Score=54.04  Aligned_cols=65  Identities=17%  Similarity=0.119  Sum_probs=48.8

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...|.|.+.||+|||++|+.++++.++||.+..+.+.. ++.+...|.+.-     .+.+.++++-..|++
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-----~~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-----YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-----CCHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999997743 566544555432     235556666666654

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.83  E-value=0.45  Score=36.50  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=35.8

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCC
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDG  301 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g  301 (419)
                      +.+..+|+||-|+++...|+.+|+|+.+  |.+.+..+. ..=.|+++-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence            3445589999999999999999999998  776543332 33346777666

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.78  E-value=0.26  Score=50.31  Aligned_cols=58  Identities=14%  Similarity=0.106  Sum_probs=44.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQ  403 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~  403 (419)
                      .|.+=+...|+||.|+++-..|+.+|||+.+.+..-  .+.+. -.|.|||. .+|. ..++.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP--~~~~~-~~Y~Ffid-~eg~-~~d~~  354 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP--IHGNP-WEEMFYLD-VQAN-LRSAE  354 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee--cCCCC-ceEEEEEE-EeCC-CCCHH
Confidence            566767778999999999999999999999988864  33333 68999995 5563 33443

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.76  E-value=0.22  Score=44.19  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=36.4

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCe
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGR  149 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~  149 (419)
                      ..+.+.+.++||.|++++++++++|.||..|+.+.-.+|.
T Consensus         3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~   42 (218)
T COG1707           3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE   42 (218)
T ss_pred             ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence            3578889999999999999999999999999999877775

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.60  E-value=0.49  Score=52.08  Aligned_cols=75  Identities=12%  Similarity=0.046  Sum_probs=50.2

Q ss_pred             EEEEeCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHH
Q 044730          239 ITVDNLLS-PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHL  317 (419)
Q Consensus       239 V~v~~~~~-~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L  317 (419)
                      |.++.... .....|.|.+.||+|||++|+.+++..++||....+.+...++.+.-.|.+.     +.+-..+.+|...|
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L  729 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKL  729 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            45543212 2345889999999999999999999999999997776421134444345554     23345666666665


Q ss_pred             H
Q 044730          318 K  318 (419)
Q Consensus       318 ~  318 (419)
                      +
T Consensus       730 ~  730 (743)
T PRK10872        730 N  730 (743)
T ss_pred             h
Confidence            5

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.58  E-value=0.3  Score=47.31  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCC
Q 044730          340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFP  398 (419)
Q Consensus       340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~  398 (419)
                      ..|.+=+..+|+||-|+++-.+|+.+|||+.+.+..-  .+.+. -.+.|||. .+|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP--~k~~~-~~Y~F~iD-~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRP--LKTGL-GEYLFFID-IEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecc--cCCCC-eeEEEEEE-EecCc
Confidence            3678888888999999999999999999999888755  44442 67899995 55544

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.53  E-value=0.38  Score=52.84  Aligned_cols=65  Identities=11%  Similarity=0.102  Sum_probs=47.8

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|.|.+.||+|+|++|+.+++..++||.++...+..++.+...|.+.-     .+.+.+++|-..|+.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-----RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999987744455444444432     134556666555554

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.39  E-value=0.4  Score=35.86  Aligned_cols=45  Identities=24%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             ceEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          341 ANPVELCGK----GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       341 ~t~lev~~~----DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ...|.|.+.    |.||+++.++..|.+.||+|....  |    +   -.+.|+|...
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S----~---~~~~ilV~~~   54 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S----E---ISISILVKEE   54 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E----S---SEEEEEEEGG
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E----e---eeEEEEEeHH
Confidence            456777777    799999999999999999998776  5    1   3567778643

>PRK06382 threonine dehydratase; Provisional

Probab=93.36  E-value=0.97  Score=46.47  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCC
Q 044730           29 DKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPS  108 (419)
Q Consensus        29 dk~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  108 (419)
                      .+.|++++-+....--.+  .++.+..+|.  -.|+-+++  |+  +|...+.+.++..+               .....
T Consensus       273 ~~~gi~~epsga~~laal--~~~~~~~~~~--~Vv~i~sG--Gn--~d~~~~~~~~~~~~---------------~~~~~  329 (406)
T PRK06382        273 EREKIVAEPSGAVGLAAI--MEGKVDVKGK--KVAIVVSG--GN--INPLLMSKIIYKEL---------------ENLGQ  329 (406)
T ss_pred             HHcCceechHHHHHHHHH--HhccccCCCC--EEEEEeCC--CC--CCHHHHHHHHHHHH---------------HhcCC
Confidence            455665554433222222  1223333453  24444543  65  57677766665432               11234


Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEE----ecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVM----TTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~----T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.++|.-+|+||-|++++.+|.++|+||.+....    ....+...-+|.|...     +++..+.|.+.|++
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            67899999999999999999999999999987765    3334555556666542     23444566666655

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.25  E-value=0.091  Score=41.56  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             EEEEEeC-CCChHHHHHHHHHHcCCeEEEEEEEec--------CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          112 LKYCCVD-RKGLLHDATKVLTELEFTIQRVKVMTT--------PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       112 i~v~~~D-rpGLl~~i~~vL~~~g~nI~~A~i~T~--------~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      |++.|+| +.|++++|+++|+++|+||.+-+-.+.        ...+..-.|.|..+.      ...+.+++.|..
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~   71 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLE   71 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHH
Confidence            7899999 999999999999999999976544320        012334455565321      235667777776

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=93.19  E-value=0.58  Score=36.09  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=36.0

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCC
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGK  302 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~  302 (419)
                      +.+..+|+||-|+++...|+.+|+|+.+  |.+++.... ..-.|+++.+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~--IeSRP~~~~~~~y~F~id~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVH--IESRKSKRRSSEFEIFVDCECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC
Confidence            3445589999999999999999999999  776543333 233467776664

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.94  E-value=0.74  Score=34.52  Aligned_cols=60  Identities=10%  Similarity=0.000  Sum_probs=42.1

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.-+||||=|.++..++.+ |.||....=..  .+..  ...+++.-+..     +++..+++.++|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~--~~~v~v~ie~~-----~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGD--EARVLVGIQVP-----DREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCC--ceEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            46678999999999999999 99999876655  3333  33444333222     35566788888776

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=92.93  E-value=2.7  Score=43.91  Aligned_cols=122  Identities=19%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      +-+.|++.+   .++||+++++..+|+++|++|..  +.+   +. ..=.|.+..+  .+. ...+..+.+.|...+. .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~s---s~-~sis~~v~~~--~~~-~a~~~~l~~el~~~~~-~  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MPS---GI-DDLSIIIRER--QLT-PKKEDEILAEIKQELN-P  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--EcC---CC-cEEEEEEeHH--Hhh-HHHHHHHHHHHHHhhC-C
Confidence            456677774   67899999999999999999998  432   12 2223666521  111 1111344444443331 1


Q ss_pred             CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          325 LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      ..+....        .-..|.+.|.   ++||+++++..+|.+.|++|....-++.   +   ..-.|.|.+
T Consensus       377 ~~I~~~~--------~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S---e---~~Is~vV~~  434 (454)
T PRK09034        377 DELEIEH--------DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS---E---ISIMFGVKN  434 (454)
T ss_pred             ceEEEeC--------CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC---c---ceEEEEEcH
Confidence            1122111        2457888664   7899999999999999999987654441   1   344566653

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.86  E-value=3.7  Score=46.16  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+.+.|+|.+.   ++||+++++..+|+++|++|..  |.. +..+ ..=.|.+..+  ..  +...+.|.+.+...+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Isq-ssSe-~sIsf~V~~~--d~--~~av~~L~~~f~~el~~  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--ITQ-SSSE-YSISFCVPQS--DA--AKAKRALEEEFALELKE  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EEc-CCCC-ceEEEEEeHH--HH--HHHHHHHHHHHHHHhcc
Confidence            45678888865   6899999999999999999987  443 1112 2223555421  00  11123333333322321


Q ss_pred             --CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          324 --PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       324 --~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                        ...+.+..        ....|.+.|.   ++||++.++..+|.+.|++|....-++
T Consensus       385 ~~~~~i~~~~--------~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs  434 (819)
T PRK09436        385 GLLEPLEVEE--------NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS  434 (819)
T ss_pred             CCcceEEEeC--------CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence              11122111        2567888887   789999999999999999998765444

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=92.79  E-value=11  Score=38.49  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEE
Q 044730          248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~  279 (419)
                      +...|.|.+.   ++||+++++..+|.+.|+||..
T Consensus       336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            4567888874   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.56  E-value=0.88  Score=34.11  Aligned_cols=60  Identities=13%  Similarity=0.086  Sum_probs=38.5

Q ss_pred             EEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          113 KYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       113 ~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.-+||||=|.+++.+++. |.||..-+-.....+. +.++....-    .+++..+++.+.|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~-~~v~v~ie~----~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDE-ARVLVGIQV----PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCc-eEEEEEEEe----CCHHHHHHHHHHHHH
Confidence            56779999999999999999 9999987554322222 222222221    135556666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.39  E-value=0.68  Score=50.84  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-     .+.+.+..|-..|+.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-----KNYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999998754565543444432     134455556555554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.30  E-value=1  Score=49.51  Aligned_cols=65  Identities=6%  Similarity=0.048  Sum_probs=46.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK  318 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  318 (419)
                      ....|.|.+.||+|+|.+|+.+++..++||.+....+ ..++.+.-.|.+.     +.+-..+..|...|+
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr  689 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKIR  689 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            3458899999999999999999999999999987654 2233333334444     223446666666654

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=92.23  E-value=0.82  Score=38.46  Aligned_cols=51  Identities=10%  Similarity=0.027  Sum_probs=37.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeE-eEEEEecCCC
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNM-DLFIRQTDGK  302 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~-d~F~v~~~g~  302 (419)
                      +.+.+..+|+||-|+++...|+.+|+|+.+  |.+.+...... =.|++..+|.
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~eY~FfIdieg~   93 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGGDLEVLVRCEVH   93 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCceEEEEEEEEeC
Confidence            445555599999999999999999999999  77654433332 2467775554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=92.22  E-value=13  Score=38.89  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             CeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730          108 SLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS  184 (419)
Q Consensus       108 ~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~  184 (419)
                      +...|++.|.   +.+|+++++..+|+++|+||.--...+ ....+  .|.|..        +..++..+.|.+.+....
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s-se~sI--sf~V~~--------~d~~~av~~L~~~~~~~~  388 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS-SESNI--SLVVDE--------ADLEKALKALRREFGEGL  388 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC-CCceE--EEEEeH--------HHHHHHHHHHHHHHHHhc
Confidence            3567888774   789999999999999999998643323 22111  333332        222233333433332110


Q ss_pred             cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCcc
Q 044730          185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKG  261 (419)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpG  261 (419)
                                                                         ...|.+.    .+...|.|.|.   +++|
T Consensus       389 ---------------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~g  413 (465)
T PRK06291        389 ---------------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPG  413 (465)
T ss_pred             ---------------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcC
Confidence                                                               0012221    23457888875   7999


Q ss_pred             HHHHHHHHHHhCCceEEE
Q 044730          262 LFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~  279 (419)
                      +..++..+|.+.|++|..
T Consensus       414 v~~rif~aL~~~~I~v~~  431 (465)
T PRK06291        414 VAGRIFSALGESGINIKM  431 (465)
T ss_pred             hHHHHHHHHHHCCCCEEE
Confidence            999999999999999986

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=92.01  E-value=2.4  Score=43.03  Aligned_cols=93  Identities=14%  Similarity=0.127  Sum_probs=60.1

Q ss_pred             EEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEE
Q 044730           62 IVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVK  141 (419)
Q Consensus        62 dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~  141 (419)
                      .|+.+++  ||  +|.+.+...++..+ .              .......+.+.-+||||.|++++..++++|.||.+-.
T Consensus       277 vv~i~sG--Gn--~d~d~l~~vi~~gl-~--------------~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~  337 (380)
T TIGR01127       277 IAVVLSG--GN--IDLNLLNKIIEKGL-V--------------KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKID  337 (380)
T ss_pred             EEEEeCC--CC--CCHHHHHHHHHHHH-H--------------hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence            4566665  65  67787776665422 1              1123568889999999999999999999999999875


Q ss_pred             EE---ec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          142 VM---TT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       142 i~---T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      -.   .. +.+.+.-.+.+...     +++..+.|.+.|++
T Consensus       338 ~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       338 HDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             eeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            43   21 23444334444321     24555566666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.70  E-value=1.1  Score=33.46  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             CeEEEEEEec----CCccHHHHHHHHHHhCCceEEE
Q 044730          248 AHTLLQIKCA----DQKGLFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       248 ~~t~v~V~~~----DrpGLl~~i~~~L~~~~~~I~~  279 (419)
                      ++..|+|.++    |.||++++++..|++.|++|+.
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~   40 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM   40 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE
Confidence            4667888888    7999999999999999999998

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.55  E-value=0.69  Score=43.04  Aligned_cols=49  Identities=12%  Similarity=0.075  Sum_probs=39.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL  391 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v  391 (419)
                      ...+-+.-.||||.+..|+.+|.++|+||..+.+++...|..  |.=+.-+
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~--Ai~vl~v  196 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNI--ALLTIEI  196 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCE--EEEEEEe
Confidence            346777889999999999999999999999999999554554  5444333

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00657 asp_kinases aspartate kinase

Probab=91.47  E-value=19  Score=37.32  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CC
Q 044730          248 AHTLLQIKCADQ--KGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HP  324 (419)
Q Consensus       248 ~~t~v~V~~~Dr--pGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~  324 (419)
                      +...|+|.+.+-  +|++.++..+|+++|++|..  |.+. ..+ ..=.|.+..+        ..++..+.|..... ..
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~-~se-~sIs~~I~~~--------~~~~a~~~L~~~~~~~~  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQS-SSE-TSISFTVDKE--------DADQAKTLLKSELNLSA  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEec-CCC-ceEEEEEEHH--------HHHHHHHHHHHHHHhcC
Confidence            455677776443  79999999999999999987  4431 112 1113454421        11222222322111 11


Q ss_pred             C-eeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 044730          325 L-RVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAE  373 (419)
Q Consensus       325 ~-~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~  373 (419)
                      . .+...        ...+.+.+.|.   ++||++++|..+|++.|++|....
T Consensus       369 ~~~I~~~--------~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 LSSVEVE--------KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cceEEEc--------CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            0 12111        12567888664   789999999999999999998764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.46  E-value=0.46  Score=48.19  Aligned_cols=49  Identities=14%  Similarity=0.130  Sum_probs=39.8

Q ss_pred             cceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          340 VANPVELCGK-GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       340 ~~t~lev~~~-DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      ..+.+-+.-+ |+||.|++|+..|.++||||.+.++.-    .++|.-. |||+=
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~----~r~~~y~-f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR----TPAGELH-FRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec----ccCceEE-EEEEE
Confidence            4677888886 999999999999999999999999932    3445544 99863

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.16  E-value=1.7  Score=47.78  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=45.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHH
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLK  318 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~  318 (419)
                      ..+.|.|.+.||+|+|++|+.+++..++||.+..+.+ ..++.+.-.|.+.     +.+-..+..|...|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT-YGKREAILNITVE-----IKNYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            3458899999999999999999999999999977764 2223333234443     233445666655554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK08210 aspartate kinase I; Reviewed

Probab=91.04  E-value=7.2  Score=39.94  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=71.3

Q ss_pred             CCCCeEEEEeCCCC-CchhHHHHHHHHhcCeEEEEEEeeeCCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCcccc
Q 044730           17 PTEPSVVTVNCPDK-NGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSY   95 (419)
Q Consensus        17 ~~~~t~v~v~~~dk-~Gll~d~~~~l~d~~l~I~k~~istdg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   95 (419)
                      ..+.+.|+|...+. +|.+..+...|.+.|.+|--...|++.    -.|.+.+.      +.+.....+++.+...    
T Consensus       268 ~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~------~~~~a~~~l~~~~~~v----  333 (403)
T PRK08210        268 VSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDE------DSEKAKEILENLGLKP----  333 (403)
T ss_pred             cCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHH------HHHHHHHHHHHhCCcE----
Confidence            45778888888776 999999999999999998877666542    23544321      2233334444433110    


Q ss_pred             ccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEE
Q 044730           96 YFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQR  139 (419)
Q Consensus        96 ~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~  139 (419)
                              ....+...|.+.|.   ++||+++++..+|++.|+||..
T Consensus       334 --------~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        334 --------SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --------EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                    12245678888884   8999999999999999999974

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.02  E-value=1  Score=40.01  Aligned_cols=48  Identities=15%  Similarity=0.162  Sum_probs=36.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      -+.+.+.++||.|.++|-.++++|.||..|.-....-|+.  +.--|-+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~--~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEK--ALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCce--EEEEEEee
Confidence            4778899999999999999999999999998876333333  44444443

>PRK09181 aspartate kinase; Validated

Probab=90.98  E-value=21  Score=37.52  Aligned_cols=107  Identities=16%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      +.+.|+|.+.   +.+|+++++..+|++++++|..  +.+ +  . ..-.|.+..+      ....+++.+.|+..+.. 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~s-s--~-~sis~~v~~~------~~~~~~~~~~L~~~~~~-  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KAT-N--A-NTITHYLWGS------LKTLKRVIAELEKRYPN-  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEe-c--C-cEEEEEEcCC------hHHHHHHHHHHHHhcCC-
Confidence            5667787654   7899999999999999999985  554 1  2 1223455321      12334555555544421 


Q ss_pred             CeeeeeCCCCCCCCCcceEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEEee
Q 044730          325 LRVMVTNRGPDTELLVANPVELCGKG--RPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~lev~~~D--RpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      ..+..         .....|.+.|.+  +||+.+++..+|.+.|+||....-++
T Consensus       395 ~~i~~---------~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~  439 (475)
T PRK09181        395 AEVTV---------RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM  439 (475)
T ss_pred             ceEEE---------CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC
Confidence            12211         124578888865  89999999999999999998755544

>PRK09084 aspartate kinase III; Validated

Probab=90.81  E-value=11  Score=39.39  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=64.0

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+-..|+|.+.   +.+|+++++...|++++++|..  |.+ +  + ..=.|.+.....  . ......+.+.+.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~s-s--e-~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITT-S--E-VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eec-c--C-cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence            35667888765   6899999999999999999998  654 2  2 122355542211  0 01112232333333432


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCc
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGI  367 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl  367 (419)
                      ..++.+.+        +...|.+.|.   ++||+.+++..+|.+.++
T Consensus       375 ~~~i~~~~--------~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        375 LCRVEVEE--------GLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             CCeEEEEC--------CeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence            22232221        2457888887   789999999999987543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.46  E-value=1.4  Score=41.11  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEec
Q 044730          106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITD  158 (419)
Q Consensus       106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~  158 (419)
                      .++...+-+.-.||||....|+..|.++++||-..++.... +|.++-++.+..
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            34455677778999999999999999999999999998754 456765555543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11899 prephenate dehydratase; Provisional

Probab=90.34  E-value=1.8  Score=42.14  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK  303 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~  303 (419)
                      .|.+-+..+|+||.|+++..+|+++|+|+..  |.++...+. ..=+|+++.+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence            4666666689999999999999999999988  777654443 3445788877753

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=90.29  E-value=1.5  Score=38.97  Aligned_cols=68  Identities=15%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG  181 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~  181 (419)
                      .-.+.+.-.|.||-|+++++.|+..|+||.+-.+--+.+....=+-.|+..     ++..++++.++|.....
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence            446788889999999999999999999999988876665543333333331     45678899999888543

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=90.22  E-value=0.18  Score=39.84  Aligned_cols=29  Identities=10%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             EEEEEecC-CccHHHHHHHHHHhCCceEEE
Q 044730          251 LLQIKCAD-QKGLFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       251 ~v~V~~~D-rpGLl~~i~~~L~~~~~~I~~  279 (419)
                      +|+|.|+| +.|++++++.+|+++|+||.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~   30 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR   30 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence            47999999 999999999999999999987

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK11898 prephenate dehydratase; Provisional

Probab=89.43  E-value=1.7  Score=42.51  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             eEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          342 NPVELCGK-GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       342 t~lev~~~-DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      +.+-+.-. ++||-|+++-..|+++|+|+.+.+..-  ...+. -.+.|||+ -+|.. .++.. +++.+.|++
T Consensus       197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP--~~~~~-~~y~F~vd-~eg~~-~~~~~-~~al~~L~~  264 (283)
T PRK11898        197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRP--TKTGL-GTYFFFID-VEGHI-DDVLV-AEALKELEA  264 (283)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEeccc--CCCCC-ccEEEEEE-EEccC-CCHHH-HHHHHHHHH
Confidence            44555554 469999999999999999999888765  33343 46999995 45543 44333 444455544

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=89.41  E-value=1.4  Score=48.08  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|.|.+.||+|||++|+.+|+..+.||.+....+. ++..+.+.+-..    +.+..-+.+|-.+|++
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~----v~n~~~L~~i~~~l~~  691 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIE----VKNLNHLGRVLARLKQ  691 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEE----ECcHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999888874 454444432211    1234445556555554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.03  E-value=0.85  Score=46.97  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=40.1

Q ss_pred             cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730          340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL  391 (419)
Q Consensus       340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v  391 (419)
                      ....|-+.-.|+||.+..|+..|+++|+||...+..+  .|+.  +.-+|-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~--A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEI--GYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCE--EEEEEEe
Confidence            4567888999999999999999999999999999988  6665  6554433

>PLN02317 arogenate dehydratase

Probab=88.83  E-value=1.8  Score=43.98  Aligned_cols=54  Identities=15%  Similarity=0.170  Sum_probs=41.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCce-------------eEEEEEEEecCCCC
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQ-------------WEVYRFLLDESLEF  397 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~-------------~~~d~F~v~d~~g~  397 (419)
                      -|.|-+.-.|+||.|+++-.+|+.+|||+.+.+..-  ...+.             .-.+.|||+ -+|.
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP--~~~~~~~~~~~~~~~~~~~~eY~FyVD-~eg~  349 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP--QRKRPLRVVDDSNSGTAKYFDYLFYVD-FEAS  349 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee--cCCCCccccccccccccccccEEEEEE-EEcC
Confidence            467777778999999999999999999999888755  22221             146899995 4453

>PRK08198 threonine dehydratase; Provisional

Probab=88.72  E-value=7.9  Score=39.66  Aligned_cols=67  Identities=18%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec----CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT----PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .....+.+.-+|+||-|+++...++++|.||.+-.....    +.+.+--.+.+..     .+++..+.|.+.|++
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~l~~~L~~  395 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-----RGPEHIEEILDALRD  395 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            346689999999999999999999999999998776421    2333322222221     135556666666654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=88.59  E-value=4.1  Score=31.96  Aligned_cols=61  Identities=11%  Similarity=0.094  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCc-hhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHT-KQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~-~~r~~~i~~~L~~  178 (419)
                      .+.+.-+||||=|++++.+|+  +.||....-.....+..--.+.+..     .+ ++-.+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-----ANGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence            467788999999999999999  7777754443322233222232322     13 4556666666655

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.29  E-value=1  Score=46.44  Aligned_cols=50  Identities=14%  Similarity=0.057  Sum_probs=42.6

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                      ....|.+.-+|+||.++.|+.+|+++|+||..-++++ .+++++.+|-+..
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCC
Confidence            5678888999999999999999999999999999987 5677876665543

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=88.11  E-value=2.1  Score=44.20  Aligned_cols=68  Identities=10%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      .|.|-++..|+||-|++|-.+|+++|||+.+.+..-  ...+. -.+.|||+ -+|..  + ...+++.+.|++.
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRP--sk~~~-~eY~FFVD-~eg~~--~-~~v~~aL~~Lk~~   83 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRP--SKTHP-GEYEFFVE-FDEAS--D-RKLEGVIEHLRQK   83 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEeccc--CCCCC-ccEEEEEE-EecCc--c-HHHHHHHHHHHHh
Confidence            366777779999999999999999999999888765  33343 46889996 44543  2 2335566666553

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=87.89  E-value=3  Score=40.56  Aligned_cols=54  Identities=20%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK  303 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~  303 (419)
                      ..|.+.+..+|+||-|+++...|+.+|+|...  |.++..... ..-+|+++.+|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCeeEEEEEEEecCc
Confidence            46778888889999999999999999999987  776544434 4445788876664

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=87.59  E-value=3.4  Score=45.20  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=36.8

Q ss_pred             EEEEeCC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          239 ITVDNLL-SPAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       239 V~v~~~~-~~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      |.++... ......|.|.+.||+|||.+|+.+|+..+.||......+
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~  662 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS  662 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc
Confidence            4454442 345568999999999999999999999999999955543

>PRK09181 aspartate kinase; Validated

Probab=87.22  E-value=43  Score=35.30  Aligned_cols=35  Identities=6%  Similarity=0.171  Sum_probs=28.9

Q ss_pred             CeEEEEEEecC--CccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          248 AHTLLQIKCAD--QKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       248 ~~t~v~V~~~D--rpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +...|.+.|..  +||+.+++..+|++.|+||..  +.+
T Consensus       401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~--i~q  437 (475)
T PRK09181        401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLA--LHQ  437 (475)
T ss_pred             CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEE--EEe
Confidence            34567777754  899999999999999999987  554

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.03  E-value=8  Score=28.01  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      .+.+.|.   +.||++++|.++|.+.|+++.....++    ..  ..-.|.|..
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~----s~--~~is~~v~~   50 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS----SE--RNISAVIDE   50 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC----cc--cEEEEEEeH
Confidence            4566664   789999999999999999998765433    11  445577754

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.89  E-value=1.1  Score=42.45  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEE--EEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLD--LFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d--~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ....|.+.-.|.||.+++|+++|+..|.||.+--+--+ ....+.  ++.++..      ..-+++.+++|+...
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t-evk~LsrmTIVl~Gt------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT-EVKALSRMTIVLQGT------DGVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech-hhhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence            35578888999999999999999999999998777542 233333  4444432      233666666666533

>PRK06349 homoserine dehydrogenase; Provisional

Probab=86.64  E-value=3  Score=43.18  Aligned_cols=52  Identities=13%  Similarity=0.070  Sum_probs=40.4

Q ss_pred             CcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          339 LVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       339 ~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ...+.|.+...|+||.|++|+.+|.++|++|.+..-..  ..+.  ....+++++.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~--~~~~--~~~ivivT~~  397 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG--AGGE--GAEIVIVTHE  397 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc--CCCC--ceeEEEEEEe
Confidence            34578999999999999999999999999999876543  2222  5666777753

>PRK09034 aspartate kinase; Reviewed

Probab=86.48  E-value=45  Score=34.83  Aligned_cols=33  Identities=6%  Similarity=0.105  Sum_probs=27.5

Q ss_pred             CeeEEEEEE---eCCCChHHHHHHHHHHcCCeEEEE
Q 044730          108 SLYLLKYCC---VDRKGLLHDATKVLTELEFTIQRV  140 (419)
Q Consensus       108 ~~~~i~v~~---~DrpGLl~~i~~vL~~~g~nI~~A  140 (419)
                      +.+.|++.+   .+++|.+++|...|+++|+||.--
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i  342 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM  342 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence            346777775   578999999999999999999864

>PLN02551 aspartokinase

Probab=86.42  E-value=49  Score=35.25  Aligned_cols=112  Identities=12%  Similarity=0.199  Sum_probs=68.1

Q ss_pred             CCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          107 PSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       107 ~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+.+.|+|.+.   +.+|.+++|...|+++|+||.--  .| ....+  .|.+....     -...+.+++.|..++..-
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-Se~sI--s~~v~~~~-----~~~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-SEVSI--SLTLDPSK-----LWSRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec-cCCEE--EEEEehhH-----hhhhhhHHHHHHHHHHHh
Confidence            44578888765   68999999999999999999854  33 22211  34443311     011223333333322110


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec--CCcc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA--DQKG  261 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~--DrpG  261 (419)
                            .                 .                           ...|.+.    .+...|.|.|.  .+||
T Consensus       434 ------~-----------------~---------------------------~~~V~v~----~~vAiISvVG~~~~~~g  459 (521)
T PLN02551        434 ------E-----------------K---------------------------IAVVNLL----QGRSIISLIGNVQRSSL  459 (521)
T ss_pred             ------h-----------------c---------------------------CCeEEEe----CCEEEEEEEccCCCCcc
Confidence                  0                 0                           0012222    23556777754  6899


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEE
Q 044730          262 LFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +++++..+|++.|+||..  |+.
T Consensus       460 vaariF~aLa~~gInV~m--Isq  480 (521)
T PLN02551        460 ILEKVFRVLRTNGVNVQM--ISQ  480 (521)
T ss_pred             HHHHHHHHHHHCCCCeEE--EEe
Confidence            999999999999999988  653

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.20  E-value=43  Score=37.82  Aligned_cols=112  Identities=8%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             CCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcc
Q 044730          106 KPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGE  182 (419)
Q Consensus       106 ~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~  182 (419)
                      ..+...|++.|.   .+||+++++...|+++|+||.-....+  ....+ .|.|..        +..++..+.|.+.+..
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sI-sf~V~~--------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSI-SFCVPQ--------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceE-EEEEeH--------HHHHHHHHHHHHHHHH
Confidence            345678899875   689999999999999999997543333  22221 344432        2233333333332221


Q ss_pred             cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CC
Q 044730          183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQ  259 (419)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---Dr  259 (419)
                      .     +.                    .                  .    ....|.+.    .+...|.|.|.   ++
T Consensus       381 e-----l~--------------------~------------------~----~~~~i~~~----~~valIsvvG~gm~~~  409 (819)
T PRK09436        381 E-----LK--------------------E------------------G----LLEPLEVE----ENLAIISVVGDGMRTH  409 (819)
T ss_pred             H-----hc--------------------c------------------C----CcceEEEe----CCEEEEEEEccCcccC
Confidence            1     00                    0                  0    00112222    24567888885   78


Q ss_pred             ccHHHHHHHHHHhCCceEEE
Q 044730          260 KGLFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       260 pGLl~~i~~~L~~~~~~I~~  279 (419)
                      ||++.++..+|.+.|+||..
T Consensus       410 ~gv~arif~aL~~~~InI~~  429 (819)
T PRK09436        410 PGIAAKFFSALGRANINIVA  429 (819)
T ss_pred             cCHHHHHHHHHHHCCCCEEE
Confidence            99999999999999999987

>PRK06545 prephenate dehydrogenase; Validated

Probab=85.92  E-value=2.5  Score=42.60  Aligned_cols=38  Identities=24%  Similarity=0.090  Sum_probs=35.3

Q ss_pred             CcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          339 LVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       339 ~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      +.++.|.|.-+||||-|++|+..|.+.|+||.+.+|.-
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            45789999999999999999999999999999999965

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=85.84  E-value=24  Score=40.10  Aligned_cols=104  Identities=17%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             CCeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+-+.|+|.+   .+.+|+++++...|++++++|..  |.+ +  + ..=+|.+.... .......++.+.+.|.    .
T Consensus       320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~s-s--e-~sis~~i~~~~-~~~~~~~~~~l~~~l~----~  388 (861)
T PRK08961        320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISS-S--E-TNVTVSLDPSE-NLVNTDVLAALSADLS----Q  388 (861)
T ss_pred             CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEc-C--C-CEEEEEEcccc-ccchHHHHHHHHHHHh----h
Confidence            3456788864   36899999999999999999987  654 2  2 11124443221 1111123333333333    2


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICI  369 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I  369 (419)
                      ..++.+..        .-..|.|.|.   .+||+++++..+|.+.|+++
T Consensus       389 ~~~i~~~~--------~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        389 ICRVKIIV--------PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             cCcEEEeC--------CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence            11122211        2457888886   78999999999999987655

>PRK06382 threonine dehydratase; Provisional

Probab=85.34  E-value=4.6  Score=41.51  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecc-cCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHS-TSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~-~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.++|.-+||||.|.+|+..|.++|+||.+....+.. ..+...+.-+|-|... +     ++..++|.+.|++
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~  398 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALRE  398 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHH
Confidence            45899999999999999999999999999887764110 0112124455555432 1     3343566666654

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=84.80  E-value=5.3  Score=29.15  Aligned_cols=45  Identities=20%  Similarity=0.112  Sum_probs=32.8

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          343 PVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      .|.+.|.   ++||+++++..+|.+.|+++....-++.    .  ..-.|.+.+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s----~--~~isf~v~~   50 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS----E--INISCVIDE   50 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc----c--ceEEEEEeH
Confidence            4556665   7899999999999999999987655441    1  444566654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08526 threonine dehydratase; Provisional

Probab=84.64  E-value=11  Score=38.66  Aligned_cols=93  Identities=15%  Similarity=0.089  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccCCCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEE
Q 044730           63 VLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKV  142 (419)
Q Consensus        63 vf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i  142 (419)
                      ++.++.  ||  +|...+.+.++..+               -.......+.+.-+||||-|++++..+.+.+.||.+-.-
T Consensus       299 v~ilsG--Gn--id~~~~~~i~~~~l---------------~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~  359 (403)
T PRK08526        299 GVVLSG--GN--IDVQMLNIIIEKGL---------------IKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY  359 (403)
T ss_pred             EEEECC--CC--CCHHHHHHHHHHHH---------------HhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence            444444  65  68888877776544               122346788999999999999999999999999998766


Q ss_pred             EecCCC---eEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          143 MTTPDG---RVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       143 ~T~~~g---~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ....+.   .-+.+......    .+++..++|.+.|++
T Consensus       360 ~r~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~l~~  394 (403)
T PRK08526        360 DRFSTKLDYGDAMISITLET----KGKEHQEEIRKILTE  394 (403)
T ss_pred             EeccCCCCCccEEEEEEEEe----CCHHHHHHHHHHHHH
Confidence            442222   12222222221    135566666666654

>PRK08198 threonine dehydratase; Provisional

Probab=84.03  E-value=7.9  Score=39.65  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccC-CceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTS-HRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTLMGW  419 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~G-e~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l~~~  419 (419)
                      ...+.|.-+||||-|.++...+.+.|.||..........+ ... ...+...-+..     +++..++|.++|++  +||
T Consensus       327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~-~~~v~v~ie~~-----~~~~~~~l~~~L~~--~G~  398 (404)
T PRK08198        327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLG-EVEVELTLETR-----GPEHIEEILDALRD--AGY  398 (404)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCc-eEEEEEEEEeC-----CHHHHHHHHHHHHH--CCC
Confidence            4579999999999999999999999999998776542111 111 22233222221     34555777777766  454

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=83.93  E-value=3.5  Score=42.74  Aligned_cols=67  Identities=10%  Similarity=0.028  Sum_probs=47.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      .+.|=++..|+||-|+++-+.|+++|||+.+.+...  ...+.|..+.|||. -+|..    ...+++.+.|+.
T Consensus        31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRP--sk~~~~e~Y~FfVD-~Eg~~----~~l~~aL~~Lk~   97 (464)
T TIGR01270        31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRD--SKDGTSKTMDVLVD-VELFH----YGLQEAMDLLKS   97 (464)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCc--CCCCCCccEEEEEE-EEcCH----HHHHHHHHHHHH
Confidence            466777779999999999999999999999888765  44444444889995 33433    223444455443

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.83  E-value=2.9  Score=44.58  Aligned_cols=49  Identities=20%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL  391 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v  391 (419)
                      .+.+=+.-.|+||.+..|+..|.++++||....++....|..  +.-+|-+
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al~~i~~  500 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--ALMVLSV  500 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EEEEEEC
Confidence            344445568999999999999999999999999988554455  5544444

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=83.69  E-value=8.9  Score=29.89  Aligned_cols=67  Identities=10%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG  181 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~  181 (419)
                      .+.+.+...++|+.|-++-++....|+.|......+-+|+.-+.+=.+.+.+.+      .+.+..+|+++..
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~------~~lL~~QLeKl~D   69 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRS------VDLLTSQLEKLYD   69 (86)
T ss_pred             eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCC------hHHHHHHHHHHcc
Confidence            578899999999999999999999999999999888766665555444443333      5668888888554

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=83.51  E-value=5.5  Score=27.93  Aligned_cols=32  Identities=13%  Similarity=0.148  Sum_probs=25.8

Q ss_pred             EEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEE
Q 044730          112 LKYCC-VDRKGLLHDATKVLTELEFTIQRVKVM  143 (419)
Q Consensus       112 i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~  143 (419)
                      |++.+ ++.+|.++++.+.|.++|++|......
T Consensus         3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~   35 (61)
T cd04891           3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQS   35 (61)
T ss_pred             EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence            44443 788999999999999999999765443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=83.13  E-value=11  Score=27.78  Aligned_cols=31  Identities=13%  Similarity=0.191  Sum_probs=25.3

Q ss_pred             EEEEEE-eCCCChHHHHHHHHHHcCCeEEEEE
Q 044730          111 LLKYCC-VDRKGLLHDATKVLTELEFTIQRVK  141 (419)
Q Consensus       111 ~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~  141 (419)
                      .|++.+ +|+||.+++++..|++.|+||....
T Consensus         3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~   34 (75)
T cd04913           3 KITLRGVPDKPGVAAKIFGALAEANINVDMIV   34 (75)
T ss_pred             EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence            345544 6999999999999999999998543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=82.87  E-value=61  Score=36.58  Aligned_cols=104  Identities=12%  Similarity=0.037  Sum_probs=66.1

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          247 PAHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       247 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      .+-+.|+|.+.   +.||.++++..+|++++++|..  |.+ +..+. .-.|.+..        ...+.+.+.|+.. ..
T Consensus       315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~--i~~-~~s~~-sis~~i~~--------~~~~~~~~~l~~~-~~  381 (810)
T PRK09466        315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLA--VGV-HPDRQ-LLQLAYTS--------EVADSALKLLDDA-AL  381 (810)
T ss_pred             CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEE--EEe-cCCCc-EEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence            35567788765   7889999999999999999987  543 22221 22244431        1223333333332 11


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFS  371 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~  371 (419)
                      ..++.+..        ....|.+.|.   .+||+..++..+|.+.++++.+
T Consensus       382 ~~~i~v~~--------~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~  424 (810)
T PRK09466        382 PGELKLRE--------GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW  424 (810)
T ss_pred             CCcEEEeC--------CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence            21222211        2557888886   5899999999999999999854

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=82.67  E-value=8.1  Score=33.15  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..-+.+.+.-.||.|.|+++-.++++.+|||+.-+...--+|++--.+.+... +-   ....+.|-+.|++
T Consensus        70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm---~~~V~~ii~kl~k  137 (150)
T COG4492          70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SM---EKDVDKIIEKLRK  137 (150)
T ss_pred             ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hh---hhhHHHHHHHHhc
Confidence            44577888899999999999999999999999988877558887555555432 11   2234455555554

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=82.52  E-value=6.5  Score=28.86  Aligned_cols=28  Identities=36%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 044730          343 PVELCGK---GRPRVFYDVTLALKALGICIF  370 (419)
Q Consensus       343 ~lev~~~---DRpGLL~~It~~L~~~gl~I~  370 (419)
                      .|.+.|.   +.||+++++..+|.+.|+++.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4666665   789999999999999999996

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=82.39  E-value=6.6  Score=40.14  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK  303 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~  303 (419)
                      .|.+-+..+|+||.|+++...|+..|+|+..  |.+....+. ..=+|++..+|..
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~~  350 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQANL  350 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCCC
Confidence            4555566689999999999999999999988  777644444 4445788877753

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=80.73  E-value=11  Score=38.31  Aligned_cols=67  Identities=13%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccC-CceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTS-HRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~G-e~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      ..+.|.-+||||.|++++..++++|.||.+..-...... ..+.+.-.|-+...      +++..++|.+.|++
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR------GKEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            378999999999999999999999999998755421011 11223344444322      23444677777765

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.71  E-value=3.6  Score=43.85  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL  391 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v  391 (419)
                      ++.+=+.-.||||.+..|+..|.++++||...++.....|..  +.-++-+
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~--al~~i~~  499 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGE--ALMLLSL  499 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCe--EEEEEEc
Confidence            334455558999999999999999999999999998555555  6555544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.07  E-value=5.1  Score=42.67  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=35.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeE
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNM  292 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~  292 (419)
                      .+..+.+..+|+||.+..++..|.++++||...++.....|+.+.
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al  495 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEAL  495 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEE
Confidence            344556677999999999999999999999998877633444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-10
2nyi_A	195	Unknown protein; protein structure initiative, PSI	5e-06

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 58.6 bits (141), Expect = 3e-10
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 22  VVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDWESLK 81
           V+T    D+ G+  ++ R++ + G  I+    +  G+   +++ +    S   +      
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI--SGSPSNITRVETT 65

Query: 82  NRLLSVCPSILVSYYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVK 141
             LL     ++       P  + +      +     D+ GL    T+   + +  +  + 
Sbjct: 66  LPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 142 VMTTPDGRVL---DLFFIT 157
             T    ++    + F I 
Sbjct: 126 AQTISKDKLHSEQNQFHIA 144

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 16  TPTEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKV 75
           + T+  VV+V   D+ G+  D    +      +     +  G    +++      S +  
Sbjct: 1   SETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIV----LVSLNAK 56

Query: 76  DWESLKNRLLSVCPSILVS---YYFNQPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTE 132
           D + +++ L S  P   +S            S     Y L     D +G++   T VL +
Sbjct: 57  DGKLIQSALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAK 116

Query: 133 LEFTIQRVKVMTTPDGRV-LDLFFIT 157
               I  ++  T P       LF + 
Sbjct: 117 KGANIVELETETLPAPFAGFTLFRMG 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.66
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.65
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.81
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.81
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.23
2f06_A	144	Conserved hypothetical protein; structural genomic	98.23
2f06_A	144	Conserved hypothetical protein; structural genomic	98.08
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.83
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.8
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.79
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.79
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.78
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.69
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.68
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.66
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.66
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.57
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.49
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.4
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.37
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.35
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.2
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.16
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.15
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.13
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.01
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.99
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.97
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.95
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.89
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.79
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.78
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.73
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.62
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.46
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.45
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.41
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.29
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.23
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.89
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.86
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.84
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.66
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.5
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.19
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.14
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.83
3luy_A	329	Probable chorismate mutase; structural genomics, A	94.47
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	94.04
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.17
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	91.74
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	91.35
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	90.9
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.63
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	90.28
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.94
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.83
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.61
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	87.08
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	85.13
3luy_A	329	Probable chorismate mutase; structural genomics, A	84.56
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	84.52
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	82.7
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	81.28
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	80.26

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=4.4e-17  Score=149.02  Aligned_cols=159  Identities=10%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC  187 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~  187 (419)
                      ..+.|+|+|+||||||+.|+++|+++||||++|++++..+++++ .|.|..+..  ..+.++++|++.|..++.+.    
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~----   76 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQIST----   76 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEE----
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhc----
Confidence            36799999999999999999999999999999999996666665 777765421  22346777777766533221    


Q ss_pred             hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHH
Q 044730          188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDIL  267 (419)
Q Consensus       188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~  267 (419)
                        .+   ..       .+                        +    ..+    . ......++|+|.|+|||||+++|+
T Consensus        77 --~~---~~-------~~------------------------~----~~~----~-~~~~~~~iltv~g~DrpGiva~Vt  111 (195)
T 2nyi_A           77 --RR---AS-------SV------------------------A----ERH----V-SPDTREYELYVEGPDSEGIVEAVT  111 (195)
T ss_dssp             --EE---CC-------CC------------------------------------C-CTTEEEEEEEEEEECCTTHHHHHH
T ss_pred             --CC---eE-------EE------------------------E----eCC----c-CCCCcEEEEEEEeCCCcCHHHHHH
Confidence              00   00       00                        0    000    0 223356799999999999999999


Q ss_pred             HHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          268 RTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       268 ~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      ++|+++|+||.+++..+....+...+.|++. ..+.+  ++.. +.|++.|....
T Consensus       112 ~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          112 AVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             HHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence            9999999999999988632113456778775 32222  2234 77777777544

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.71  E-value=7.9e-17  Score=147.29  Aligned_cols=155  Identities=16%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC-Ce
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP-LR  326 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~-~~  326 (419)
                      ..++|+|+|+|||||++.|+++|+++|+||.+|++++ ..|..+. .|.+...+.  ..+.+++.|++.|...+... ..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~-~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC-LGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE-ECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcCCe
Confidence            3578999999999999999999999999999999997 4545444 666652221  22335666666665443211 11


Q ss_pred             eeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccC--CceeEEEEEEEecCCCCCCCCHHH
Q 044730          327 VMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTS--HRQWEVYRFLLDESLEFPLASSQA  404 (419)
Q Consensus       327 v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~G--e~~~~~d~F~v~d~~g~~l~~~~~  404 (419)
                      ..+..+ ........++|+|.|+|||||+++||.+|+++|+||..+++.|  .+  ++  +.+.||++..-+.+  ++..
T Consensus        80 ~~~~~~-~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t--~~~~~~--~~~~F~m~~~~~~~--~~~~  152 (195)
T 2nyi_A           80 SSVAER-HVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETET--LPAPFA--GFTLFRMGSRVAFP--FPLY  152 (195)
T ss_dssp             CCC-----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--EECSST--TCEEEEEEEEEEEE--GGGH
T ss_pred             EEEEeC-CcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeee--cccccC--CCCeEEEEEEEEcC--CCcc
Confidence            111110 0011224689999999999999999999999999999999999  66  66  78999997655433  2333


Q ss_pred             HHHHHHHHHH
Q 044730          405 RNRIVEKVKK  414 (419)
Q Consensus       405 ~~~i~~~l~~  414 (419)
                       ++++++|..
T Consensus       153 -~~l~~~l~~  161 (195)
T 2nyi_A          153 -QEVVTALSR  161 (195)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             566666654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.66  E-value=2.9e-15  Score=136.34  Aligned_cols=152  Identities=15%  Similarity=0.087  Sum_probs=105.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC-CCee
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH-PLRV  327 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~-~~~v  327 (419)
                      .++|+|.|+|||||+++|+++|+++|+||.++++.+ .. +.+.-.|.+..+      +...+.|++.|...... ...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~-~~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FG-KEFTLLMLISGS------PSNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ET-TEEEEEEEEEEC------HHHHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cC-CceEEEEEEecC------CCCHHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999999997 44 444335666421      23567888888765521 2222


Q ss_pred             eee--CCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCC----ceeEEEEEEEecCCCCCCCC
Q 044730          328 MVT--NRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSH----RQWEVYRFLLDESLEFPLAS  401 (419)
Q Consensus       328 ~~~--~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge----~~~~~d~F~v~d~~g~~l~~  401 (419)
                      .+.  .+.+.......+.|+|.++||||++++|+.+|+++|+||..++..|  .++    +  ..+.||++..-+.+  +
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t--~~~~~~~~--~~~~F~~~~~~~~~--~  151 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT--ISKDKLHS--EQNQFHIAISARVD--S  151 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE--EC----------CEEEEEEEEEEC--T
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc--ccCCccCC--CCCEEEEEEEEeCC--C
Confidence            221  2212112235689999999999999999999999999999999999  554    5  78999997643322  1


Q ss_pred             HHHHHHHHHHHHH
Q 044730          402 SQARNRIVEKVKK  414 (419)
Q Consensus       402 ~~~~~~i~~~l~~  414 (419)
                      +...+++++++..
T Consensus       152 ~~~~~~l~~~l~~  164 (192)
T 1u8s_A          152 GCNLMQLQEEFDA  164 (192)
T ss_dssp             TSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            2123556666654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.65  E-value=6.1e-15  Score=134.25  Aligned_cols=157  Identities=10%  Similarity=0.044  Sum_probs=107.9

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccch
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSISC  187 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~~  187 (419)
                      ..+.|+|+|+||||+|++|+++|+++||||.++++++.. |.+.-.|.|..+      +.++++|++.|..+....    
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~-~~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~----   73 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFG-KEFTLLMLISGS------PSNITRVETTLPLLGQQH----   73 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEEC------HHHHHHHHHHHHHHHHHH----
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecC-CceEEEEEEecC------CCCHHHHHHHHHHHHHhc----
Confidence            357899999999999999999999999999999999955 554447777642      247788888888755321    


Q ss_pred             hhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecCCccHHHHHH
Q 044730          188 EIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCADQKGLFYDIL  267 (419)
Q Consensus       188 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~  267 (419)
                        .+   ..           .+.                ..+     .++     +..+...++|+|.|+||||++++|+
T Consensus        74 --~~---~~-----------~~~----------------~~~-----~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~  111 (192)
T 1u8s_A           74 --DL---IT-----------MMK----------------RTS-----PHD-----HQTHAYTVEVYVESDDKLGLTEKFT  111 (192)
T ss_dssp             --TC---EE-----------EEE----------------EEC-----CCC-----CCCCSEEEEEEEEESCCTTHHHHHH
T ss_pred             --CC---EE-----------EEE----------------eCC-----CCC-----CccCCceEEEEEEeCCCccHHHHHH
Confidence              10   00           000                000     011     2333456799999999999999999


Q ss_pred             HHHHhCCceEEEEEEEEeecCc----eeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHh
Q 044730          268 RTSKDLNIQIAYGRISSSVKGY----RNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       268 ~~L~~~~~~I~~A~I~t~t~g~----~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      .+|+++|+||.+++..+  .+.    ...+.|++. .-+.+  ++...+.|++.|....
T Consensus       112 ~~l~~~~~nI~~~~~~t--~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A          112 QFFAQRQIGMASLSAQT--ISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALC  166 (192)
T ss_dssp             HHHHHTTCCEEEEEEEE--EC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHhhhhc--ccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence            99999999999988886  332    466778765 22211  1223566777776544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.81  E-value=1.6e-07  Score=94.76  Aligned_cols=135  Identities=13%  Similarity=0.049  Sum_probs=89.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CCCe
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HPLR  326 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~~~  326 (419)
                      ...+|+|.|+|||||++.|+++|+++|+||.+.+-..  .++.+.-...+......    ...+.|++.|...-. -...
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~   84 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADV----ADGPALRHDVEAAIRKVGLD   84 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHH----HTSHHHHHHHHHHHHHTTCE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCc----CCHHHHHHHHHHHHHHcCeE
Confidence            3568999999999999999999999999999977764  34443322222211110    022556666654321 1233


Q ss_pred             eeeeC--CCCCCCCCcceEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          327 VMVTN--RGPDTELLVANPVELCGKG-RPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       327 v~~~~--~~~~~~~~~~t~lev~~~D-RpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      +.+..  .........+..+++.+.| +||++.+|+.+|.++|+||...+.-+..  ..  ..--|++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~--~~--~~~~~~v~  149 (415)
T 3p96_A           85 VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDY--PV--IGLELRVS  149 (415)
T ss_dssp             EEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESS--SS--EEEEEEEE
T ss_pred             EEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCC--Cc--eEEEEEee
Confidence            33322  1111123357899999999 9999999999999999999988887722  33  33346664

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.81  E-value=2.2e-07  Score=93.78  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS  186 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~  186 (419)
                      +..+.|++.|+||||+.+.|+++|+++||||++++.++ ..|++.-.+.+.-+..    ....+.+++.|.. +...   
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~-~~~~f~~~~~~~~~~~----~~~~~~l~~~l~~-~~~~---   80 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV-IRHRLTLGVLVCCPAD----VADGPALRHDVEA-AIRK---   80 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE-ETTEEEEEEEEEECHH----HHTSHHHHHHHHH-HHHH---
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE-ECCEeEEEEEEEecCC----cCCHHHHHHHHHH-HHHH---
Confidence            35789999999999999999999999999999999988 4576655555543110    1124677777776 3222   


Q ss_pred             hhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecC-CccHHHH
Q 044730          187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCAD-QKGLFYD  265 (419)
Q Consensus       187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D-rpGLl~~  265 (419)
                        +.+   ...       +.+.                    +.     .+     ......+..+++.+++ +||++.+
T Consensus        81 --~~~---~~~-------~~~~--------------------~~-----~~-----~~~~~~~~~~~llg~~~~~~~~~~  118 (415)
T 3p96_A           81 --VGL---DVS-------IERS--------------------DD-----VP-----IIREPSTHTIFVLGRPITAAAFGA  118 (415)
T ss_dssp             --TTC---EEE-------EEEC--------------------SS-----SC-----SSCCCCSEEEEEEESSCCHHHHHH
T ss_pred             --cCe---EEE-------EEEC--------------------Cc-----cc-----ccCCCCcEEEEEEeCCCCHHHHHH
Confidence              111   000       0000                    00     00     0123457789999999 9999999


Q ss_pred             HHHHHHhCCceEEEEEEEE
Q 044730          266 ILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       266 i~~~L~~~~~~I~~A~I~t  284 (419)
                      ++.+|+++|+||...+-.+
T Consensus       119 i~~~l~~~~~Ni~~l~~~~  137 (415)
T 3p96_A          119 VAREVAALGVNIDLIRGVS  137 (415)
T ss_dssp             HHHHHHHTTCEEEEEEEEE
T ss_pred             HHHHHHHcCCCccceeecc
Confidence            9999999999999865554

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.23  E-value=6.9e-06  Score=64.57  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      .+.|++.|+||||++++|+++|+++|+||.+....+. +|.+.-.+.+.-+     +...++++.+.|+.+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~-~~~~~~~i~v~~~-----~~~~l~~l~~~L~~~   69 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-DEYFTMMAVVSSD-----EKQDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEEEEEEEES-----SCCCHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE-cCEEEEEEEEEeC-----CCCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999885 4776656666432     223477788888773

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.23  E-value=7.9e-05  Score=63.74  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeee
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMV  329 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~  329 (419)
                      ..++|..+|+||.++++++.|++.|+||..-.+.. +. +..  ++.+..     .++   ++.++.|++.   +..+. 
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~-~~-~~~--~~~~~~-----~d~---~~a~~~L~~~---G~~v~-   70 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE-NA-DFG--ILRGIV-----SDP---DKAYKALKDN---HFAVN-   70 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE-CS-SCE--EEEEEE-----SCH---HHHHHHHHHT---TCCEE-
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe-cC-CCC--EEEEEe-----CCH---HHHHHHHHHc---CCeEe-
Confidence            36888999999999999999999999999844432 11 211  122221     233   2333334421   11110 


Q ss_pred             eCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 044730          330 TNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIFSAEIG  375 (419)
Q Consensus       330 ~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~  375 (419)
                                ...++-+.-+|+||.+++++++|++.|+||....+.
T Consensus        71 ----------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           71 ----------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             ----------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ----------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence                      123577778899999999999999999999876665

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.08  E-value=0.00022  Score=60.92  Aligned_cols=110  Identities=10%  Similarity=0.031  Sum_probs=78.2

Q ss_pred             eEEEEeCCCCCchhHHHHHHHHhcCeEEEEEEeee--CCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCccccccC
Q 044730           21 SVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFST--DGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILVSYYFN   98 (419)
Q Consensus        21 t~v~v~~~dk~Gll~d~~~~l~d~~l~I~k~~ist--dg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (419)
                      .-|+|.-+||+|.+.++.+.|.+.|.+|.--.++.  |.+    ++.++-      .+.+..++.|++..-.        
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~----~~~~~~------~d~~~a~~~L~~~G~~--------   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG----ILRGIV------SDPDKAYKALKDNHFA--------   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE----EEEEEE------SCHHHHHHHHHHTTCC--------
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC----EEEEEe------CCHHHHHHHHHHcCCe--------
Confidence            45778889999999999999999999998775543  533    232331      2556666777654311        


Q ss_pred             CCCCCCCCCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEE
Q 044730           99 QPSSNSSKPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFI  156 (419)
Q Consensus        99 ~~~v~~~~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V  156 (419)
                             ......+.+..+|+||.+++++++|+++|+||.....+. .+++...+|.+
T Consensus        69 -------v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~  118 (144)
T 2f06_A           69 -------VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP  118 (144)
T ss_dssp             -------EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred             -------EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence                   011235666779999999999999999999998766653 35666656655

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.83  E-value=9.8e-05  Score=57.19  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|.+.++||||++++|+++|++.|+||.+..+.+. ++.+...|.+.-     .+.+.++++.+.|++
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~-~~~~~~~i~v~~-----~~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK-DGIFTCNLMIFV-----KNTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC-SSEEEEEEEEEE-----SSHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc-CCEEEEEEEEEE-----CCHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999884 445544444432     234455555555543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.80  E-value=8.1e-05  Score=57.67  Aligned_cols=63  Identities=6%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK  413 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~  413 (419)
                      .+.|.+.+.||||+|++|+.+|++.|+||.++.+.+  .++.  +...|.+.-.      +....+++.++|+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~--~~~~--~~~~i~v~~~------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA--KDGI--FTCNLMIFVK------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE--CSSE--EEEEEEEEES------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE--cCCE--EEEEEEEEEC------CHHHHHHHHHHHh
Confidence            567999999999999999999999999999999988  4443  6666666432      3445566666654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.79  E-value=0.00019  Score=56.16  Aligned_cols=65  Identities=9%  Similarity=0.055  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ...|.+.++||||+|++|+.+|+++|+||.+....+  .+..  ..-.|.+.-.+..      ..+++.++|++.
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~--~~~~--~~~~i~v~~~~~~------~l~~l~~~L~~~   69 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEY--FTMMAVVSSDEKQ------DFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTE--EEEEEEEEESSCC------CHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEE--EcCE--EEEEEEEEeCCCC------CHHHHHHHHHHH
Confidence            467999999999999999999999999999999887  3333  4444444322211      235666666643

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.79  E-value=0.00087  Score=64.16  Aligned_cols=66  Identities=11%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...+.|++.|+||||+.++|++.|+++||||.++..++.. .|++.-...+..+.      ...+.+++.|..
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~------~~~~~L~~~f~~   71 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV------AGVNDFNSAFGK   71 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---------CHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC------CCHHHHHHHHHH
Confidence            4468999999999999999999999999999999998533 67665444443221      123466666665

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.78  E-value=0.00094  Score=63.97  Aligned_cols=67  Identities=15%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..+.|++.|+||||+.++|++.|+++||||.+++.++. ..|++.-.+.+.-+..    ....+.+++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~----~~~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK----VIPLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC----CCCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC----CCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999853 3677655554543221    1236677777766

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.69  E-value=0.00055  Score=60.12  Aligned_cols=106  Identities=19%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             CeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEEe-ecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCC
Q 044730          248 AHTLLQIKC-ADQKGLFYDILRTSKDLNIQIAYGRISSS-VKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPL  325 (419)
Q Consensus       248 ~~t~v~V~~-~DrpGLl~~i~~~L~~~~~~I~~A~I~t~-t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~  325 (419)
                      +.+.|+|.+ +|+||.++++..+|+++|+||..  |.+. +.++...=.|.+..        ...++..+.|++ +...+
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~--i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l   92 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDM--IIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI   92 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCC--EEEC----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEE--EEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc
Confidence            456788884 99999999999999999999998  5431 11122233466642        112223334443 22221


Q ss_pred             e---eeeeCCCCCCCCCcceEEEEEeCC---CcchHHHHHHHHHhCCceEEEE
Q 044730          326 R---VMVTNRGPDTELLVANPVELCGKG---RPRVFYDVTLALKALGICIFSA  372 (419)
Q Consensus       326 ~---v~~~~~~~~~~~~~~t~lev~~~D---RpGLL~~It~~L~~~gl~I~~A  372 (419)
                      .   +...        ...+.+.|.|.+   +||+++++..+|.+.|+||...
T Consensus        93 ~~~~i~~~--------~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           93 GAASIDGD--------DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             TCSEEEEE--------SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             CCceEEec--------CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            1   1111        136789999987   9999999999999999999984

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.68  E-value=0.0013  Score=63.17  Aligned_cols=69  Identities=12%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCc-hhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHT-KQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~-~~r~~~i~~~L~~  178 (419)
                      ...+.|++.|+||||+.++|++.|+++||||.+++.++. ..|++.-.+.+..+   .++ ....+.+++.|..
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~---~~~~~~~~~~L~~~f~~   78 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT---DDADALRVDALRREFEP   78 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC---C----CCHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc---CcccCCCHHHHHHHHHH
Confidence            346789999999999999999999999999999999853 35666444444322   001 1236677777765

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.66  E-value=0.0013  Score=63.26  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=50.5

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..+.|++.|+||||+.++|++.|+++||||.++..++.+ .|++.-.+.+..+..    ....+.+++.|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~----~~~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL----PFDLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS----SSCHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC----CCCHHHHHHHHHH
Confidence            467899999999999999999999999999999999743 577654444443211    1236677777765

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.66  E-value=0.0017  Score=62.16  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEec-CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTT-PDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...+.|++.|+||||+.+.|++.|+++||||.+++.++. ..|++.-.+.+..+.     ....+.+++.|..
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-----~~~~~~L~~~f~~   73 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-----DFDEAGFRAGLAE   73 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-----SCCHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-----CCCHHHHHHHHHH
Confidence            346789999999999999999999999999999999853 356664444443321     1236778888776

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.57  E-value=0.0048  Score=53.99  Aligned_cols=114  Identities=16%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             CCCeeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730          106 KPSLYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS  184 (419)
Q Consensus       106 ~~~~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~  184 (419)
                      ..+...|+|.+ +|+||.+++|++.|+++|+||.--....+++|...-.|.|..        ...++..+.|++ +..+ 
T Consensus        22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~-   91 (167)
T 2re1_A           22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDS-   91 (167)
T ss_dssp             ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG--------GGHHHHHHHHHH-SSTT-
T ss_pred             cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHH-
Confidence            34577899996 999999999999999999999865443333554333455543        112333344444 2111 


Q ss_pred             cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecC---Ccc
Q 044730          185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCAD---QKG  261 (419)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D---rpG  261 (419)
                                          +.                             ...|.+.    .+.+.|.|.+.+   +||
T Consensus        92 --------------------l~-----------------------------~~~i~~~----~~~a~vsvvG~~m~~~~G  118 (167)
T 2re1_A           92 --------------------IG-----------------------------AASIDGD----DTVCKVSAVGLGMRSHVG  118 (167)
T ss_dssp             --------------------TT-----------------------------CSEEEEE----SSEEEEEEECSSCTTCCC
T ss_pred             --------------------cC-----------------------------CceEEec----CCEEEEEEECCCcCCCcC
Confidence                                00                             0012222    356789999987   999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEE
Q 044730          262 LFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +++++..+|++.|+||..  +.+
T Consensus       119 v~a~i~~aL~~~~InI~~--ist  139 (167)
T 2re1_A          119 VAAKIFRTLAEEGINIQM--IST  139 (167)
T ss_dssp             HHHHHHHHHHHTTCCCCE--EEE
T ss_pred             HHHHHHHHHHHCCCcEEE--EEc
Confidence            999999999999999998  554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.49  E-value=0.003  Score=55.34  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=78.4

Q ss_pred             CeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEEeec---CceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          248 AHTLLQIKC-ADQKGLFYDILRTSKDLNIQIAYGRISSSVK---GYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       248 ~~t~v~V~~-~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~---g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      +.+.|+|.+ +|+||.++++..+|++.|+||..  |.+...   .+...=.|.+..+     +..+..++.+.+...+.-
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~~-----d~~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKKD-----FAQEALEALEPVLAEIGG   87 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEGG-----GHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEehH-----HHHHHHHHHHHHHHHhCC
Confidence            566777776 89999999999999999999998  654111   1123334666521     111222222334334432


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeCC---CcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGKG---RPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~D---RpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                        .+.+..        ....+.|.|.+   +||+++++.++|.+.|+||...  +|-    .  ..-.|.|...
T Consensus        88 --~v~~~~--------~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~S----e--~~is~vv~~~  143 (167)
T 2dt9_A           88 --EAILRP--------DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI--ATS----E--VRISVIIPAE  143 (167)
T ss_dssp             --EEEEEC--------SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE--EEC----S--SEEEEEEEGG
T ss_pred             --cEEEeC--------CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE--Ecc----C--CEEEEEEeHH
Confidence              333221        25689999987   9999999999999999999654  341    1  3455666543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.40  E-value=0.18  Score=52.96  Aligned_cols=289  Identities=15%  Similarity=0.153  Sum_probs=159.6

Q ss_pred             CCCeEEEEeC-CCCCchhHHHHHHHHhcCeEEEEEEeee-CCCeEEEEEEEEcCCCCCCCCHHHHHHHHHhhCCCCcc-c
Q 044730           18 TEPSVVTVNC-PDKNGLGCDLCRIILEFGLFIVRGDFST-DGRWCYIVLWVVPDASSDKVDWESLKNRLLSVCPSILV-S   94 (419)
Q Consensus        18 ~~~t~v~v~~-~dk~Gll~d~~~~l~d~~l~I~k~~ist-dg~w~~dvf~v~~~~g~~~~~~~~~~~~~~~~~~~~~~-~   94 (419)
                      .+.+.|++.. ++++|.+..+-+.|.+.+++|---.-|+ .++-.-..|.| +.+..     +.....++++.+.... .
T Consensus       268 ~~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv-~~~~~-----~~a~~~l~~~~~el~~~~  341 (600)
T 3l76_A          268 ADQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTV-VKDLL-----NTAEAVTSAIAPALRSYP  341 (600)
T ss_dssp             CCCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEE-CGGGH-----HHHHHHHHHHGGGGSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEE-eHHHH-----HHHHHHHHHHHHHhhccc
Confidence            4556666653 6899999999999999999985544443 33322233444 33221     2233333332211000 0


Q ss_pred             cccCCCCCCCCCCCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHH
Q 044730           95 YYFNQPSSNSSKPSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREE  171 (419)
Q Consensus        95 ~~~~~~~v~~~~~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~  171 (419)
                      .......+ ....+...|.++|.   .+||..+++..+|++.++||.--.  |+ +-..  .|.|..        +..++
T Consensus       342 ~~~~~~~v-~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~I--s~vI~~--------~d~~~  407 (600)
T 3l76_A          342 EADQEAEI-IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVKV--SCVIDQ--------RDADR  407 (600)
T ss_dssp             TCSSSSEE-EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSEE--EEEEEG--------GGHHH
T ss_pred             cccCccee-EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCEE--EEEEcH--------HHHHH
Confidence            00000000 12355789999986   799999999999999999997543  43 2222  233432        23333


Q ss_pred             HHHHHHHHhcccccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEE
Q 044730          172 TCEHMIAVLGEYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTL  251 (419)
Q Consensus       172 i~~~L~~vL~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~  251 (419)
                      .-+.|.+.+....                  ++....        +...+        .   ..=.-|..+    .+.+.
T Consensus       408 Av~aLh~~f~~~~------------------t~~~~~--------~~~~~--------~---~~v~Gia~~----~~~a~  446 (600)
T 3l76_A          408 AIAALSNAFGVTL------------------SPPKNQ--------TDTSH--------L---PAVRGVALD----QDQAQ  446 (600)
T ss_dssp             HHHHHHHHTTCCB------------------CCCCCC--------CC-----------C---CSCCEEEEE----CSEEE
T ss_pred             HHHHHHHhhcccC------------------CCcccc--------ccccc--------c---CceEEEEee----CCEEE
Confidence            4445555443210                  000000        00000        0   011234433    24556


Q ss_pred             EEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEee-c---Cc--eeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          252 LQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSSV-K---GY--RNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       252 v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t-~---g~--~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      |+|. .+|+||+.++|...|++.|+||.-  |.... .   .+  ...=.|.+.        .+..++..+.|++ +...
T Consensus       447 i~i~~~~~~~g~~~~if~~La~~~I~vDm--I~q~~~~~~~~g~~~~~isftv~--------~~d~~~a~~~l~~-~~~~  515 (600)
T 3l76_A          447 IAIRHVPDRPGMAAQLFTALAEANISVDM--IIQSQRCRINQGTPCRDIAFMVA--------EGDSSQAEAILQP-LIKD  515 (600)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCCCE--EEEEEECCCSSSSCEEEEEEEEE--------HHHHHHHHHHHHH-HTTT
T ss_pred             EEEecCCCCccHHHHHHHHHHHcCCcEEE--EEecccccccCCCccceEEEEEe--------HHHHHHHHHHHHH-HHHh
Confidence            6665 489999999999999999999965  43311 1   12  223346664        1223333333433 2221


Q ss_pred             ---CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          325 ---LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       325 ---~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                         ..+.+..        ....|.+.|.   .+||+-+++.++|.+.||||....  |-.      ..-.|.|...
T Consensus       516 ~~~~~v~~~~--------~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSE------i~Is~vV~~~  575 (600)
T 3l76_A          516 WLDAAIVVNK--------AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSE------IKISCVVPQD  575 (600)
T ss_dssp             STTCEEEEEC--------CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECS------SEEEEEEEGG
T ss_pred             cCCceEEEeC--------CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCC------ceEEEEEeHH
Confidence               1232221        2568888874   899999999999999999998755  411      4556667543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.37  E-value=0.0041  Score=55.12  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEeec---CceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          248 AHTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSSVK---GYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       248 ~~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~---g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      +.+.|+|. .+|+||.++++...|++.|+||..  |.+.+.   ++...=.|.+..        ...++..+.|++ +..
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~--i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~   82 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQV   82 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCE--EEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTT
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEE--EEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHH
Confidence            45677774 589999999999999999999987  543211   112221266542        122333344443 212


Q ss_pred             CC---eeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 044730          324 PL---RVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSA  372 (419)
Q Consensus       324 ~~---~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A  372 (419)
                      ..   .+.+.        .....|.|.|.   ++||+++++.++|.+.|+||...
T Consensus        83 ~~~~~~v~~~--------~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           83 QGNWTNVLYD--------DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             TTTCSEEEEE--------SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             hcCCCeEEEe--------CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            11   12111        12568889887   89999999999999999999884

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.35  E-value=0.00083  Score=58.90  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      ...|++...|+||+|++|+++|++.|+||.+..+.++.+ |..--.|.|..      +...++++.++|.++
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec------cHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999987665 66655566652      256678888888873

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.20  E-value=0.018  Score=54.98  Aligned_cols=112  Identities=10%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc-CCCee
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML-HPLRV  327 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~-~~~~v  327 (419)
                      .++++|.|+|||||++.|+.+|+++|+||.+.+-++....+.+.-...+.......    ..+.|++.|...-+ -....
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~----~~~~L~~~f~~la~~~~m~~   81 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVI----PLASLRTGFGVIAAKFTMGW   81 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCC----CHHHHHHHHHHHHHHTTCEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCC----CHHHHHHHHHHHHHHcCCEE
Confidence            46899999999999999999999999999997766422233322111222121111    24556666653221 12233


Q ss_pred             eeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 044730          328 MVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIF  370 (419)
Q Consensus       328 ~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~  370 (419)
                      .+.....      ...|=|....+---|.++-...+.-.++..
T Consensus        82 ~l~~~~~------~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  118 (288)
T 3obi_A           82 HMRDRET------RRKVMLLVSQSDHCLADILYRWRVGDLHMI  118 (288)
T ss_dssp             EEEETTS------CEEEEEEECSCCHHHHHHHHHHHTTSSCEE
T ss_pred             EeeccCC------CcEEEEEEcCCCCCHHHHHHHHHCCCCCeE
Confidence            3332211      224556666666677777777776666543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.16  E-value=0.035  Score=58.49  Aligned_cols=198  Identities=12%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             CeeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccccc
Q 044730          108 SLYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYSIS  186 (419)
Q Consensus       108 ~~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~~~  186 (419)
                      +.+.|++.+ +++||.+++|...|+++++||.--......+|..--.|.|..        +.+++..+.|++ +..+   
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~--------~~~~~a~~~l~~-~~~e---  336 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVK--------DLLNTAEAVTSA-IAPA---  336 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECG--------GGHHHHHHHHHH-HGGG---
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeH--------HHHHHHHHHHHH-HHHH---
Confidence            345666665 799999999999999999999533222223454433455543        123334444444 2221   


Q ss_pred             hhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCccHH
Q 044730          187 CEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKGLF  263 (419)
Q Consensus       187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLl  263 (419)
                        +.- +           .+                       ..   ....|.+.    .+...|.|.+.   .+||+.
T Consensus       337 --l~~-~-----------~~-----------------------~~---~~~~v~~~----~~~a~VsvVG~gm~~~~Gv~  372 (600)
T 3l76_A          337 --LRS-Y-----------PE-----------------------AD---QEAEIIVE----KGIAKIAIAGAGMIGRPGIA  372 (600)
T ss_dssp             --GSS-S-----------TT-----------------------CS---SSSEEEEE----CSEEEEEEECGGGTTCTTHH
T ss_pred             --hhc-c-----------cc-----------------------cc---CcceeEec----CCeEEEEEECCCcccCccHH
Confidence              000 0           00                       00   11234433    25678999986   799999


Q ss_pred             HHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCCCeeeeeCCCCC--------
Q 044730          264 YDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHPLRVMVTNRGPD--------  335 (419)
Q Consensus       264 ~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~~~v~~~~~~~~--------  335 (419)
                      +++..+|++.++||..  |++ +  +. --.|.+..        +..++..+.|.+.+............+.        
T Consensus       373 a~if~aL~~~~Ini~~--ist-S--e~-~Is~vI~~--------~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gi  438 (600)
T 3l76_A          373 AKMFKTLADVGVNIEM--IST-S--EV-KVSCVIDQ--------RDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGV  438 (600)
T ss_dssp             HHHHHHHHHTTCCCCE--EEE-C--SS-EEEEEEEG--------GGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEE
T ss_pred             HHHHHHHHhCCCcEEE--Eec-C--CC-EEEEEEcH--------HHHHHHHHHHHHhhcccCCCccccccccccCceEEE
Confidence            9999999999999987  554 2  21 22355541        2344455666666643210000000000        


Q ss_pred             CCCCcceEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEe
Q 044730          336 TELLVANPVELCG-KGRPRVFYDVTLALKALGICIFSAEIG  375 (419)
Q Consensus       336 ~~~~~~t~lev~~-~DRpGLL~~It~~L~~~gl~I~~A~I~  375 (419)
                      ......+.|.|.. +|+||+.++|-..|.+.||+|....-+
T Consensus       439 a~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          439 ALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             EeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            0012345666644 799999999999999999999655443

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.15  E-value=0.0016  Score=57.05  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=49.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ..|+|...||||+|++|+.+|++.|+||.+..+.+  ..+.....-+|-+.   |    +.+..++|..+|++.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~--t~d~~~sriti~V~---~----d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAP--TDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE--CSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeee--cCCCCEEEEEEEEe---c----cHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999976  22322255556564   2    255668888888764

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.13  E-value=0.0019  Score=56.60  Aligned_cols=65  Identities=11%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      ...|.+...|+||+|++|+++|++.|+||.+..+.++.+ |..--.|.|..      +...++++.++|.++
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999987664 66655566653      255678888888873

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.01  E-value=0.002  Score=56.46  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=49.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      ..+.|...||||+|++|+.+|+++|+||.+..+....  +.....-+|-+.   |    ++...++|.++|.+..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~--d~g~sritivV~---~----d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTE--DPTLSRMTLVTN---G----PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECS--STTEEEEEEEEE---E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecC--CCCEEEEEEEEe---c----cHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999997622  322245555554   2    1456678888887643

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.99  E-value=0.021  Score=54.85  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=33.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      .++++|.|+|||||++.|+.+|+++|+||.++.-+.
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~   57 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHS   57 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence            468999999999999999999999999999977664

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.97  E-value=0.036  Score=52.82  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=32.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      .++++|.|+|||||++.|+.+|+++|+||.+.+-++
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~   43 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD   43 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec
Confidence            468999999999999999999999999999977664

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.95  E-value=0.037  Score=52.78  Aligned_cols=109  Identities=8%  Similarity=0.008  Sum_probs=64.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe--cCCCCCCCHHHHHHHHHHHHHHhc-CC
Q 044730          248 AHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ--TDGKKVVDPKQQTALCFHLKEEML-HP  324 (419)
Q Consensus       248 ~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~--~~g~~i~~~~~~~~l~~~L~~al~-~~  324 (419)
                      ..++++|.|+|||||++.|+.+|+++|+||.++.-++....+    .|.+.  -+....    ..+.|++.|...-+ -.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g----~Ffmr~~~~~~~~----~~~~L~~~f~~la~~~~   77 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSS----KFFMRVSVEIPVA----GVNDFNSAFGKVVEKYN   77 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTT----EEEEEEEEECCC-------CHHHHHHHHHHGGGT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCC----eEEEEEEEEcCCC----CHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999997766322223    23332  222111    12356666654322 12


Q ss_pred             CeeeeeCCCCCCCCCcceEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 044730          325 LRVMVTNRGPDTELLVANPVELCGKGRPRVFYDVTLALKALGICIF  370 (419)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~  370 (419)
                      ....+.....      ...|=|....+---|.++-...+.-.++..
T Consensus        78 m~~~l~~~~~------~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  117 (287)
T 3nrb_A           78 AEWWFRPRTD------RKKVVIMVSKFDHCLGDLLYRHRLGELDME  117 (287)
T ss_dssp             CEEEEEETTC------CCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             CeeEeeccCC------CcEEEEEEeCCCcCHHHHHHHHHCCCCCeE
Confidence            2333332211      124555555555677777777776666543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.09  Score=46.55  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             CCeeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecC--CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          107 PSLYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTP--DGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       107 ~~~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+.+.|+|.+ +|+||.+++|...|++.|+||.--......  +|..--.|.|...     +   .++..+.|++ +..+
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-----~---~~~a~~~L~~-~~~e   84 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-----V---GPAAVEKLDS-LRNE   84 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-----T---HHHHHHHHHH-THHH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-----H---HHHHHHHHHH-HHHh
Confidence            4566777765 799999999999999999999743322222  4554445666542     1   2223333333 1111


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQK  260 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---Drp  260 (419)
                           +.                                             ...|.++    .+...|.|.|.   ++|
T Consensus        85 -----l~---------------------------------------------~~~v~~~----~~va~VsvVG~gm~~~~  110 (181)
T 3s1t_A           85 -----IG---------------------------------------------FSQLLYD----DHIGKVSLIGAGMRSHP  110 (181)
T ss_dssp             -----HC---------------------------------------------CSEEEEE----SCEEEEEEEEECCTTCH
T ss_pred             -----cC---------------------------------------------cceEEEe----CCEEEEEEEecccccCc
Confidence                 00                                             0012222    24567888875   899


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEEE
Q 044730          261 GLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       261 GLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      |+.+++..+|++.|+||..  |++
T Consensus       111 Gvaa~~f~aLa~~~InI~~--Ist  132 (181)
T 3s1t_A          111 GVTATFCEALAAVGVNIEL--IST  132 (181)
T ss_dssp             HHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             hHHHHHHHHHHHCCCcEEE--EEc
Confidence            9999999999999999998  555

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.79  E-value=0.044  Score=52.36  Aligned_cols=36  Identities=8%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      .+++++.|+|||||+++|+.+|+++|+||.+++-++
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            468999999999999999999999999999977664

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.78  E-value=0.02  Score=49.89  Aligned_cols=110  Identities=10%  Similarity=0.060  Sum_probs=71.5

Q ss_pred             CCCeeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEecC--CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcc
Q 044730          106 KPSLYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTTP--DGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGE  182 (419)
Q Consensus       106 ~~~~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~  182 (419)
                      ..+...|++.+ +|+||.++++.+.|++.|+||.--....+.  +|..--.|.|...     +   .++..+.|.+ +..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-----d---~~~a~~~L~~-~~~   83 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-----F---AQEALEALEP-VLA   83 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-----G---HHHHHHHHHH-HHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-----H---HHHHHHHHHH-HHH
Confidence            34677888888 899999999999999999999864332211  2333334555431     1   2223333433 211


Q ss_pred             cccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEecC---C
Q 044730          183 YSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCAD---Q  259 (419)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D---r  259 (419)
                      +.     .                                            .  .+.++    .+...|.|.|.+   +
T Consensus        84 ~~-----~--------------------------------------------~--~v~~~----~~~a~vsvVG~gm~~~  108 (167)
T 2dt9_A           84 EI-----G--------------------------------------------G--EAILR----PDIAKVSIVGVGLAST  108 (167)
T ss_dssp             HH-----C--------------------------------------------C--EEEEE----CSEEEEEEEESSGGGS
T ss_pred             Hh-----C--------------------------------------------C--cEEEe----CCEEEEEEECCCcccC
Confidence            10     0                                            0  12222    246688999876   9


Q ss_pred             ccHHHHHHHHHHhCCceEEE
Q 044730          260 KGLFYDILRTSKDLNIQIAY  279 (419)
Q Consensus       260 pGLl~~i~~~L~~~~~~I~~  279 (419)
                      ||+++++..+|++.|+||..
T Consensus       109 ~Gv~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A          109 PEVPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             THHHHHHHHHHHHTTCCCCE
T ss_pred             cCHHHHHHHHHHHCCCCEEE
Confidence            99999999999999999965

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.73  E-value=0.031  Score=49.33  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             CCeeEEEEE-EeCCCChHHHHHHHHHHcCCeEEEEEEEecC--CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhccc
Q 044730          107 PSLYLLKYC-CVDRKGLLHDATKVLTELEFTIQRVKVMTTP--DGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEY  183 (419)
Q Consensus       107 ~~~~~i~v~-~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~  183 (419)
                      .+.+.|+|. .+|+||.+++|+..|++.|+||.---..+..  +|..--.|.+..        +..++..+.|++ +..+
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HHHh
Confidence            456788884 5899999999999999999999865444321  332211255542        222333333433 2111


Q ss_pred             ccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCc
Q 044730          184 SISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQK  260 (419)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---Drp  260 (419)
                                           +.                             ...+.+.    .+...|.|.|.   ++|
T Consensus        84 ---------------------~~-----------------------------~~~v~~~----~~~a~VsvVG~gm~~~~  109 (178)
T 2dtj_A           84 ---------------------GN-----------------------------WTNVLYD----DQVGKVSLVGAGMKSHP  109 (178)
T ss_dssp             ---------------------TT-----------------------------CSEEEEE----SCEEEEEEEEECCTTCH
T ss_pred             ---------------------cC-----------------------------CCeEEEe----CCeEEEEEEcCCcccCc
Confidence                                 00                             0112222    24567888886   899


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEEE
Q 044730          261 GLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       261 GLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      |+++++..+|++.|+||..  |.+
T Consensus       110 Gv~arif~aLa~~~InI~~--ist  131 (178)
T 2dtj_A          110 GVTAEFMEALRDVNVNIEL--IST  131 (178)
T ss_dssp             HHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             cHHHHHHHHHHHCCCCEEE--EEc
Confidence            9999999999999999988  554

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.62  E-value=0.089  Score=46.56  Aligned_cols=123  Identities=18%  Similarity=0.166  Sum_probs=76.9

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEe-ec--CceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          248 AHTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSS-VK--GYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       248 ~~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~-t~--g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      +.+.|+|. -+|+||.+++|..+|++.|+||..  |.+. +.  .+...-.|.+..+     +..+..++.+.+...+. 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~--I~q~~s~~~~g~~~isftv~~~-----~~~~a~~~L~~~~~el~-   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG-   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCC--EEECCCCTTTCEEEEEEEEETT-----THHHHHHHHHHTHHHHC-
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEE--EEecCCcccCCccEEEEEEehh-----HHHHHHHHHHHHHHhcC-
Confidence            34455554 479999999999999999999987  5531 11  2333445676522     11122222223333331 


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ...+.+..        ....+.+.|.   ++||+.+++.++|.+.|+||....  |-   +   ..-.|.|...
T Consensus        87 ~~~v~~~~--------~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS---e---i~Is~vV~~~  144 (181)
T 3s1t_A           87 FSQLLYDD--------HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS---E---IRISVLCRDT  144 (181)
T ss_dssp             CSEEEEES--------CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE---T---TEEEEEEEGG
T ss_pred             cceEEEeC--------CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC---C---CEEEEEEeHH
Confidence            22232221        2567888877   899999999999999999998866  31   1   4455777643

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.46  E-value=0.0057  Score=55.60  Aligned_cols=62  Identities=24%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC----CCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP----DGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~----~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...|.+.+.||||+|++|+.+|++++.||...+..+..    +|.+.-.+.+.+.        .++++-+.|++
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--------~Le~LL~kLrk   69 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--------DFEKILERVKT   69 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--------CHHHHHHHHHT
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--------CHHHHHHHHhC
Confidence            46899999999999999999999999999999999865    5665444444431        25555555554

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.45  E-value=0.0049  Score=56.02  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCC-ceeEEEEEEEe
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSH-RQWEVYRFLLD  392 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge-~~~~~d~F~v~  392 (419)
                      ...|++.+.||||+|++|+.+|+++++||......+...|+ ...+.-.|-+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            45799999999999999999999999999999998855444 22233334444

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.41  E-value=0.014  Score=52.28  Aligned_cols=67  Identities=10%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-CeEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-GRVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ....|.+...|+||.|++|+++|+..|+||.+-.+..+.+ |..--++.|..+      ...+++|.++|.++.
T Consensus        28 m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           28 REHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             eEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            3578999999999999999999999999999988875555 655445666542      345777888877643

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.29  E-value=0.011  Score=52.78  Aligned_cols=67  Identities=15%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      ...|.|...|+||.|++|+.+|++.|+||.+..+..  ..+.....-+|.|.+.       +...++|..+|.+.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~--ted~gisRitIvV~g~-------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGE--SETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEE--CSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeec--cCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcC
Confidence            357999999999999999999999999999998874  2232113344455422       233467777776643

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.23  E-value=0.076  Score=47.86  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             CCCCeeEEEEEE-eCCCChHHHHHHHHHHcCCeEEEEEEEec--CCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhc
Q 044730          105 SKPSLYLLKYCC-VDRKGLLHDATKVLTELEFTIQRVKVMTT--PDGRVLDLFFITDGLELLHTKQRREETCEHMIAVLG  181 (419)
Q Consensus       105 ~~~~~~~i~v~~-~DrpGLl~~i~~vL~~~g~nI~~A~i~T~--~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~  181 (419)
                      ...+...|++.+ +|+||..++|.+.|++.|+||----...+  .++..--.|.+..        +..++..+.|.+ +.
T Consensus        31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~--------~d~~~~~~~l~~-~~  101 (200)
T 4go7_X           31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR--------DVGPAAVEKLDS-LR  101 (200)
T ss_dssp             EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG--------GGHHHHHHHHHT-TH
T ss_pred             ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch--------hhHHHHHHHHHH-HH
Confidence            345577888886 89999999999999999999974322211  1334444465543        122223333332 11


Q ss_pred             ccccchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEe---cC
Q 044730          182 EYSISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKC---AD  258 (419)
Q Consensus       182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~D  258 (419)
                      ..     +.                                             ...|.+++    +...|.|.+   +.
T Consensus       102 ~~-----~~---------------------------------------------~~~v~~~~----~iakVSvVG~GM~~  127 (200)
T 4go7_X          102 NE-----IG---------------------------------------------FSQLLYDD----HIGKVSLIGAGMRS  127 (200)
T ss_dssp             HH-----HC---------------------------------------------CSEEEEEC----CEEEEEEEEESCTT
T ss_pred             hh-----hc---------------------------------------------eeeEEEec----Ceeeeeeecccccc
Confidence            10     00                                             00122221    344566665   78


Q ss_pred             CccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          259 QKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       259 rpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      +||+.+++..+|++.|+||.-  |+|
T Consensus       128 ~~GVaak~F~aLa~~~INI~m--Ist  151 (200)
T 4go7_X          128 HPGVTATFCEALAAVGVNIEL--IST  151 (200)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             CCCcHHHHHHHHHHCCCCEEE--EEc
Confidence            999999999999999999998  665

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.89  E-value=0.22  Score=44.77  Aligned_cols=124  Identities=18%  Similarity=0.175  Sum_probs=77.4

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEeec---CceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhc
Q 044730          247 PAHTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSSVK---GYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEML  322 (419)
Q Consensus       247 ~~~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~---g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~  322 (419)
                      ++.+.|+|. .+|+||+.++|..+|++.|+||-.  |.+...   .....-.|.+..+     +..+...+.+.+...+.
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDm--I~Qs~s~~~~~~~~~sftv~~~-----d~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCC--EECCCCC--CCEEEEEEEEEGG-----GHHHHHHHHHTTHHHHC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEE--EeeccccccccceEEEEecchh-----hHHHHHHHHHHHHhhhc
Confidence            356677776 489999999999999999999988  654211   1233335666421     11122223333333332


Q ss_pred             CCCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          323 HPLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      . ..+.+..        ....|.+.|.   .+||+.+++.++|.+.|+||....  |-   |   ..-.|.|.+.
T Consensus       106 ~-~~v~~~~--------~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS---E---i~IS~vV~~~  163 (200)
T 4go7_X          106 F-SQLLYDD--------HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS---E---IRISVLCRDT  163 (200)
T ss_dssp             C-SEEEEEC--------CEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC---S---SEEEEEEEGG
T ss_pred             e-eeEEEec--------CeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc---C---CEEEEEEeHH
Confidence            1 1222221        2446777765   789999999999999999998764  41   2   4556767543

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.86  E-value=0.032  Score=48.39  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .|+|.|.||+||+++|+.+|++.+.||..+.+.+  +|.    +++.-+.   .+.+-+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~--~g~----i~~~~~~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--IGR----IYLNFAE---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET--TTE----EEEEECC---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec--CCE----EEEEEEe---CCHHHHHHHHHHHHc
Confidence            5889999999999999999999999999999976  365    3333221   234445666666655

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.84  E-value=0.01  Score=51.65  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=32.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      .|+|.+.||+|||++|+.+|.+.++||..+++.+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~   35 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP   35 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec
Confidence            4899999999999999999999999999999977

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.66  E-value=0.31  Score=48.84  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEEe-ec--CceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          248 AHTLLQIK-CADQKGLFYDILRTSKDLNIQIAYGRISSS-VK--GYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       248 ~~t~v~V~-~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~-t~--g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      +.+.|+|. .+|+||.++++...|+++|+||..  |... +.  .+...=.|.+..+     +..+..++.+.+...+..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~--I~q~~s~~~~g~~~isf~v~~~-----~~~~a~~~l~~~~~~~~~  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVFSVEDGTTDITFTCPRS-----DGRRAMEILKKLQVQGNW  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEE--EEECCCC--CCEEEEEEEEETT-----THHHHHHHHHHHHTTTTC
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEE--EEccCccccCCcceEEEEEech-----hHHHHHHHHHHHHHHcCC
Confidence            56678887 589999999999999999999998  5321 11  1223334666521     222222222223222221


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSA  372 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A  372 (419)
                       ..+.+..        ....+.|.|.   ++||+++++..+|.+.||||...
T Consensus       336 -~~v~~~~--------~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          336 -TNVLYDD--------QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             -SEEEEEC--------CEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             -ceEEEeC--------CeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence             1222211        2557888886   79999999999999999999854

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.50  E-value=0.93  Score=45.31  Aligned_cols=137  Identities=18%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             CeeEEEEE-EeCCCChHHHHHHHHHHcCCeEEEEEEEecC--CCeEEEEEEEecCCCCCCchhHHHHHHHHHHHHhcccc
Q 044730          108 SLYLLKYC-CVDRKGLLHDATKVLTELEFTIQRVKVMTTP--DGRVLDLFFITDGLELLHTKQRREETCEHMIAVLGEYS  184 (419)
Q Consensus       108 ~~~~i~v~-~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~--~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL~~~~  184 (419)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||.--...|+.  +|..--.|.|...     +.++   ..+.|++ +..+.
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-----~~~~---a~~~l~~-~~~~~  333 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-----DGRR---AMEILKK-LQVQG  333 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-----THHH---HHHHHHH-HHTTT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-----hHHH---HHHHHHH-HHHHc
Confidence            44677887 4899999999999999999999865444433  4543334655531     2222   3333443 22110


Q ss_pred             cchhhhccCCccccccccCCCChhHHhhhhcCCCCCccccccccccccccCccEEEEEeCCCCCeEEEEEEec---CCcc
Q 044730          185 ISCEIQLAGPEYESLQAFTSLPPAVAEELFGSELPDKEDFSRVLSTEVTQNKASITVDNLLSPAHTLLQIKCA---DQKG  261 (419)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpG  261 (419)
                           .                                             ...|.++    .+...|.|.+.   ++||
T Consensus       334 -----~---------------------------------------------~~~v~~~----~~~a~vsvVG~gm~~~~G  359 (421)
T 3ab4_A          334 -----N---------------------------------------------WTNVLYD----DQVGKVSLVGAGMKSHPG  359 (421)
T ss_dssp             -----T---------------------------------------------CSEEEEE----CCEEEEEEECGGGTSCTT
T ss_pred             -----C---------------------------------------------CceEEEe----CCeEEEEEEccCcccCcc
Confidence                 0                                             0012222    24567888885   8999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHh
Q 044730          262 LFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEM  321 (419)
Q Consensus       262 Ll~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al  321 (419)
                      .++++..+|++.|+||..  |++ +. ...  .|.+..        +..++..+.|.+++
T Consensus       360 v~a~~f~aL~~~~InI~~--is~-Se-~~i--s~vV~~--------~d~~~Av~~Lh~~f  405 (421)
T 3ab4_A          360 VTAEFMEALRDVNVNIEL--IST-SE-IRI--SVLIRE--------DDLDAAARALHEQF  405 (421)
T ss_dssp             HHHHHHHHHHHTTCCCCE--EEE-ET-TEE--EEEEEG--------GGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCEEE--EEc-CC-CeE--EEEEeH--------HHHHHHHHHHHHHH
Confidence            999999999999999995  554 22 222  255541        23344555666555

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.14  E-value=0.056  Score=51.37  Aligned_cols=54  Identities=11%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCC
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFP  398 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~  398 (419)
                      -|.|-+..+|+||-|+++-..|+.+|||+.+.+..-  ...+. -.+.|||+ .+|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~FfvD-~eg~~  253 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRP--SRKKA-FEYLFYAD-FIGHR  253 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TEEEEEEE-EESCT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeE--cCCCC-cceEEEEE-EecCC
Confidence            355666667999999999999999999999988865  44443 47999995 55654

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.83  E-value=0.066  Score=51.61  Aligned_cols=59  Identities=15%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             ceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHH
Q 044730          341 ANPVELCGK-GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQA  404 (419)
Q Consensus       341 ~t~lev~~~-DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~  404 (419)
                      -|.|-+..+ |+||-|+++-..|+.+|||+.+.+..-  ...+. -.|.|||+ .+|.. .++..
T Consensus       201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~FfiD-~eg~~-~d~~v  260 (313)
T 3mwb_A          201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRP--TGQYL-GHYFFSID-ADGHA-TDSRV  260 (313)
T ss_dssp             EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TSEEEEEE-EESCT-TSHHH
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEee--cCCCC-ccEEEEEE-EeCCC-CcHHH
Confidence            466767775 999999999999999999999888865  44443 46999995 55654 44444

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=94.47  E-value=0.15  Score=49.43  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=41.9

Q ss_pred             EEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHH
Q 044730          343 PVELCGK--GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQA  404 (419)
Q Consensus       343 ~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~  404 (419)
                      .+-+...  |+||-||++-..|+.+|||+.+.+..-  ...+. -.|.|||+ .+|.. .|+..
T Consensus       208 s~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~FfiD-~eg~~-~d~~v  266 (329)
T 3luy_A          208 SVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRP--IKGRT-GTYSFIVT-LDAAP-WEERF  266 (329)
T ss_dssp             EEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEE-EEEEEEEE-ESSCT-TSHHH
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeE--CCCCC-ccEEEEEE-EeCCc-CCHHH
Confidence            3334444  799999999999999999999888865  44543 57999985 66754 34443

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=94.04  E-value=0.52  Score=47.66  Aligned_cols=121  Identities=12%  Similarity=0.077  Sum_probs=79.9

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCCCHHHHHHHHHHHHHHhcC
Q 044730          248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVVDPKQQTALCFHLKEEMLH  323 (419)
Q Consensus       248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~~~~~~~~l~~~L~~al~~  323 (419)
                      +.+.|+|.+   .+.||++++|..+|++++++|..  |.+ .  . ..-.|.+. .+-.+     ..+.+.+.|...+. 
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~-~--~-~~is~~V~~~d~~~-----~~~~~~~el~~~~~-  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPS-G--V-DSVSLVIEDCKLDG-----KCDKIIEEIKKQCN-  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCE-E--T-TEEEEEEEHHHHTT-----THHHHHHHHHHHSC-
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--Eec-C--C-CEEEEEEecchHHH-----HHHHHHHHHHHhcC-
Confidence            456788886   68999999999999999999987  554 1  1 12236665 22111     23445555555442 


Q ss_pred             CCeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          324 PLRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       324 ~~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ...+.+..        ....|.|.|.   .+||+.+++..+|.+.||||....-.|    ..  ..-.|.|...
T Consensus       365 ~~~v~v~~--------~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgt----Se--i~Is~vV~~~  424 (446)
T 3tvi_A          365 PDSIEIHP--------NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGS----SE--INVIVGVETV  424 (446)
T ss_dssp             CSEEEEEE--------EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECS----CT--TEEEEEEEGG
T ss_pred             CCcEEEeC--------CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecC----CC--ceEEEEEcHH
Confidence            21232221        2457888887   589999999999999999998765434    12  4456777644

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.17  E-value=0.32  Score=45.71  Aligned_cols=66  Identities=12%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             ceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730          341 ANPVELCG---KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK  413 (419)
Q Consensus       341 ~t~lev~~---~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~  413 (419)
                      -|.|-+..   .|+||-|+++-..|+.+|||+.+.+..-  ...+. -.+.|||+= +  .+.++.. ++..+.|+
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP--~~~~~-~~Y~FfiD~-e--~~~d~~v-~~aL~~L~  254 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRP--LKTQL-GMYRFFVQA-D--SAITTDI-KKVIAILE  254 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEE--CSSST-TCEEEEEEE-S--CCSCHHH-HHHHHHHH
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEee--cCCCC-ccEEEEEEE-e--cCCcHHH-HHHHHHHH
Confidence            35566666   8999999999999999999999988865  44443 479999963 3  3445444 33334443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=91.74  E-value=1.8  Score=44.42  Aligned_cols=121  Identities=13%  Similarity=0.131  Sum_probs=76.9

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe-cCCCCCC-CHHHHHHHHHHHHHHhc
Q 044730          248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ-TDGKKVV-DPKQQTALCFHLKEEML  322 (419)
Q Consensus       248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~-~~g~~i~-~~~~~~~l~~~L~~al~  322 (419)
                      +.+.|+|.+   .++||++++|..+|+++|++|..  |.+ ..   ..=.|.+. .+..... ..+.++++    ...+.
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~--I~s-se---~sis~~v~~~~~~~~~~~~~~l~~~----~~el~  409 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VAT-SE---VSISLTLDPSKLWSRELIQQELDHV----VEELE  409 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EEE-ET---TEEEEEECCGGGSSSCCCHHHHHHH----HHHHT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEE--EEe-CC---CeEEEEEechHhhhhhHHHHHHHHH----HHHhC
Confidence            567888886   68999999999999999999998  665 21   22236665 2211110 12233333    33333


Q ss_pred             CCCeeeeeCCCCCCCCCcceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          323 HPLRVMVTNRGPDTELLVANPVELCGK--GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       323 ~~~~v~~~~~~~~~~~~~~t~lev~~~--DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      .-..+.+..        ....|.+.|.  ..||+.+++..+|.+.|+||....-.+     .+ ..-.|.|.
T Consensus       410 ~~~~v~~~~--------~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGs-----Se-i~Is~vV~  467 (510)
T 2cdq_A          410 KIAVVNLLK--------GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA-----SK-VNISFIVN  467 (510)
T ss_dssp             TTSEEEEEE--------EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT-----TC-SEEEEEEE
T ss_pred             CCCeEEEeC--------CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecC-----Cc-ceEEEEEe
Confidence            211232221        2457888887  789999999999999999998754323     20 44556665

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=91.35  E-value=8  Score=38.86  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEE
Q 044730          248 AHTLLQIKCA---DQKGLFYDILRTSKDLNIQIAYGRIS  283 (419)
Q Consensus       248 ~~t~v~V~~~---DrpGLl~~i~~~L~~~~~~I~~A~I~  283 (419)
                      +...|.|.|.   .+||+.+++..+|++.|+||..  |+
T Consensus       373 ~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~m--Is  409 (446)
T 3tvi_A          373 NMALVATVGTGMAKTKGIANKIFTALSKENVNIRM--ID  409 (446)
T ss_dssp             EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEE--EE
T ss_pred             CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEE--EE
Confidence            3557888885   5899999999999999999998  66

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=90.90  E-value=0.92  Score=38.72  Aligned_cols=114  Identities=12%  Similarity=0.063  Sum_probs=69.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHHhcCC
Q 044730          248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEEMLHP  324 (419)
Q Consensus       248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~al~~~  324 (419)
                      +.+.|+|.+   +++||..+++..+|+++|++|..  |.+ .. .  .=.|.+... .      ..+++.+.|    ...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~--I~~-s~-~--~Isf~v~~~-~------~~~~il~~l----~~~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDM--VAT-SE-V--GVSLTIDND-K------NLPDIVRAL----SDI   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSC--EEC-CS-S--EEEEEESCC-T------THHHHHHHH----TTT
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEE--EEe-cC-C--EEEEEECCh-H------HHHHHHHHH----hcc
Confidence            456788875   57899999999999999999987  664 22 2  223666421 1      223333333    222


Q ss_pred             CeeeeeCCCCCCCCCcceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          325 LRVMVTNRGPDTELLVANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      ..+.+..        ....+.+.|.   ++||+.+++..+|.  |++|....=.+    ..  ..-.|.|...
T Consensus        80 ~~v~~~~--------~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~----Se--~~is~vv~~~  136 (157)
T 3mah_A           80 GDVTVDK--------DMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGG----SN--YNVSVLVKAE  136 (157)
T ss_dssp             EEEEEEE--------EEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECS----SS--SCEEEEEEGG
T ss_pred             CeEEEeC--------CeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCC----CC--CEEEEEEcHH
Confidence            1222211        2457888876   68999999999998  99988654323    11  3456777644

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.63  E-value=1.1  Score=46.22  Aligned_cols=51  Identities=16%  Similarity=0.168  Sum_probs=42.6

Q ss_pred             cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      .++.+-+.-.||||.+..|+..|.++|+||...++.....|+.  +.-++.+.
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~--a~~~i~vd  503 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPG--ATILLRLD  503 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSC--EEEEEEES
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCE--EEEEEEEC
Confidence            3567888899999999999999999999999999998554555  66666664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.94  E-value=0.76  Score=45.80  Aligned_cols=48  Identities=10%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      ...|-+.-.|+||++..|+.+|.++|+||......+  .|+.  +.-++-+.
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~--A~~vidvD  378 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQM--GYVVIDIE  378 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSE--EEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCE--EEEEEEcC
Confidence            456778899999999999999999999999999999  6776  65555554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.83  E-value=1.1  Score=44.56  Aligned_cols=50  Identities=18%  Similarity=0.084  Sum_probs=44.0

Q ss_pred             CeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          108 SLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       108 ~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                      +...|.+.-.|+||.+..|+.+|.++|+||....+.+ .++.++-++-+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            4567889999999999999999999999999999998 7888877777654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.61  E-value=2.1  Score=44.11  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEEecCCCCCCchhHHHHHH
Q 044730          106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFITDGLELLHTKQRREETC  173 (419)
Q Consensus       106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~r~~~i~  173 (419)
                      .+....|.+.-+|+||.+..|+..|.++|+||...++.... +|.++-++.+.++    .+++.+++|+
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~~~~~l~~l~  515 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VPDDVRTAIA  515 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CCHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----CCHHHHHHHh
Confidence            34567788889999999999999999999999999998743 5567666666542    2455555554

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=87.08  E-value=1.9  Score=40.77  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecCCCC
Q 044730          249 HTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTDGKK  303 (419)
Q Consensus       249 ~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~g~~  303 (419)
                      .|.|.+..+|+||-|+++...|+.+|+|+..  |.++...+. ..-.|+++-+|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTK--IESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTEEEEEEEEESCT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeE--EEeeEcCCCCcceEEEEEEecCC
Confidence            4556666689999999999999999999988  777644333 3445788877754

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=85.13  E-value=1.1  Score=44.73  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      -|.|-+..+|+||-|+++-..|+.+|||+.+.+..-  ...+. -.+.|||. -+  ...++ ..+++.+.|++
T Consensus        34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRP--sk~~~-~eY~FfVD-~e--h~~d~-~v~~AL~eL~~  100 (429)
T 1phz_A           34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRP--SRLNK-DEYEFFTY-LD--KRTKP-VLGSIIKSLRN  100 (429)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEE--CSSCT-TEEEEEEC-BC--GGGHH-HHHHHHHHHHH
T ss_pred             eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeee--cCCCC-ccEEEEEE-Ee--eCCCH-HHHHHHHHHHh
Confidence            567777778999999999999999999999888755  43332 57999995 33  22332 22444455544

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=84.56  E-value=6  Score=38.13  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             CCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEe-EEEEecCCCC
Q 044730          258 DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMD-LFIRQTDGKK  303 (419)
Q Consensus       258 DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d-~F~v~~~g~~  303 (419)
                      |+||-|+++...|+.+|+|+..  |.+....+...+ .|+++-+|..
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~eg~~  261 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTS--FISRPIKGRTGTYSFIVTLDAAP  261 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEE--EEEEEETTEEEEEEEEEEESSCT
T ss_pred             CCCCHHHHHHHHHHHCCcceEE--EEeeECCCCCccEEEEEEEeCCc
Confidence            7999999999999999999988  776544444444 5788877764

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=84.52  E-value=2.7  Score=40.25  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEEeecCcee-EeEEEEecCCCC
Q 044730          248 AHTLLQIKCA-DQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN-MDLFIRQTDGKK  303 (419)
Q Consensus       248 ~~t~v~V~~~-DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~-~d~F~v~~~g~~  303 (419)
                      ..|.|.+..+ |+||-|+++...|+.+|+|+..  |.+....+.. .-.|+++.+|..
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSR--IESRPTGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTSEEEEEEEESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEE--EEEeecCCCCccEEEEEEEeCCC
Confidence            4566667775 9999999999999999999987  7765433333 335788877754

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=82.70  E-value=3.6  Score=38.48  Aligned_cols=51  Identities=29%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCce-eEeEEEEecC
Q 044730          248 AHTLLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYR-NMDLFIRQTD  300 (419)
Q Consensus       248 ~~t~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~-~~d~F~v~~~  300 (419)
                      ..|.|.+..   +|+||-|+++...|+.+|+|+..  |.++...+. ..-.|+++.+
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeE--EEEeecCCCCccEEEEEEEe
Confidence            344555555   89999999999999999999988  776644333 3345788855

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=81.28  E-value=11  Score=37.45  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=41.5

Q ss_pred             CCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730          107 PSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT  157 (419)
Q Consensus       107 ~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~  157 (419)
                      ++...|.+.-+|.||.+.+|+.+|+++|+||..-...| .++.+.-++-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT-DGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC-CCceEEEEEEec
Confidence            45689999999999999999999999999999877666 666665555553

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=80.26  E-value=1.5  Score=44.19  Aligned_cols=35  Identities=29%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CcceEEEEEeCCCcchHHHHHHHHHhCCceEEEEE
Q 044730          339 LVANPVELCGKGRPRVFYDVTLALKALGICIFSAE  373 (419)
Q Consensus       339 ~~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~  373 (419)
                      ...+-+.+...|+||+|++|+.+|.++|++|.+.-
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~  391 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMV  391 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence            35667889999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.003

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 18 TEPSVVTVNCPDKNGLGCDLCRIILEFGLFIVRGDFSTDGRWCYIVLWVVPDASSDKVDW 77
          T+  V+T    D+ G+  ++ R++ + G  I+    +  G+   +++ +    S    + 
Sbjct: 3  TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI----SGSPSNI 58

Query: 78 ESLKNRLLSV 87
            ++  L  +
Sbjct: 59 TRVETTLPLL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.88
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.63
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.39
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.27
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.09
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.9
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.78
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.78
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.71
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.68
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.57
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.45
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.41
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.23
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.21
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.17
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.11
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.07
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.04
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.0
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	96.91
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.75
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.47
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.46
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.85
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.74
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	90.83
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.42
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	85.57
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.65
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.04

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.88  E-value=7.3e-09  Score=79.74  Aligned_cols=66  Identities=11%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             CCCeeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          106 KPSLYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       106 ~~~~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...++.|++.|+||||++++++++|+++||||.+++.++ .++.+.-++.|.-      ++..++++++.|..
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~-~~~~~~~~~~v~~------~~~~~~~l~~~L~~   67 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISG------SPSNITRVETTLPL   67 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEE------CHHHHHHHHHHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEE-ECCeeEEEEEEEc------CcccHHHHHHHHHH
Confidence            356889999999999999999999999999999999998 5677766777764      25567888888877

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.63  E-value=1.2e-07  Score=72.23  Aligned_cols=63  Identities=11%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      +.|++.|+||||++++|+++|+++||||.+.+.++ .++.+.-.+.+..+.+.  +   .+++++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~-~~~~f~~~~~v~~~~~~--~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV-LDEYFTMMAVVSSDEKQ--D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEESSCC--C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEE-eCCEEEEEEEEEEecCC--C---HHHHHHHHHH
Confidence            57999999999999999999999999999999988 46666556666543221  2   5667777776

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.39  E-value=1.2e-06  Score=66.87  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 044730          247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQTDGKKVVDPKQQTALCFHLKEE  320 (419)
Q Consensus       247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~~~g~~i~~~~~~~~l~~~L~~a  320 (419)
                      ..+++|++.|+||||++++++++|+++|+||.+++..+  .++.+.-.+.+..+      +...++|++.|...
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~--~~~~~~~~~~v~~~------~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGS------PSNITRVETTLPLL   68 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEEC------HHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEE--ECCeeEEEEEEEcC------cccHHHHHHHHHHH
Confidence            35789999999999999999999999999999988875  46666544444421      23456666666543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.27  E-value=1.8e-06  Score=65.33  Aligned_cols=47  Identities=9%  Similarity=0.079  Sum_probs=38.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ  298 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~  298 (419)
                      ++|++.|+||||++++++++|+++|+||.+.+-.+  .++.+.-.+.+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~--~~~~f~~~~~v~   49 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEYFTMMAVVS   49 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEE--eCCEEEEEEEEE
Confidence            57999999999999999999999999999977664  445544344444

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.09  E-value=1.6e-05  Score=61.36  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=45.2

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCC-------CeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPD-------GRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~-------g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      .+.|+|.|+|||||+++|+++|+++|+||.+.+-.|...       +.+...+.+.-+.     ...++.+++.|..
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-----~~~~~~l~~~l~~   77 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-----GCNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-----TSCHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-----cccHHHHHHHHHH
Confidence            467889999999999999999999999999988766321       1222222333222     2236677777776

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.90  E-value=2.6e-05  Score=60.06  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=30.9

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEE
Q 044730          250 TLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISS  284 (419)
Q Consensus       250 t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t  284 (419)
                      ..|.|.|+|||||+++|+++|+++|+||.+.+-.+
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            47889999999999999999999999999955443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.78  E-value=2.3e-05  Score=58.24  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeE--EEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRV--LDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~--~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ..|.+.+.||||+|++|+.++++++.||.+....+..+|.+  .-.|++.....      .++++-+.|+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~------~l~~ll~kL~~   66 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG------DFEKILERVKT   66 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS------CHHHHHHHHHT
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc------cHHHHHHHHHc
Confidence            46899999999999999999999999999999988667653  33455544211      25556555554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=0.00012  Score=54.35  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=40.7

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEE
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLL  391 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v  391 (419)
                      .+.+-+.-.||||+|.+|+.+|.+.|+||..+.+++...|..  +.-++-+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~--a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPG--ATILLRL   51 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSC--EEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCe--EEEEEEc
Confidence            568889999999999999999999999999999998665555  5444433

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.71  E-value=7.4e-05  Score=54.29  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEe
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLD  392 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~  392 (419)
                      .+.|...||||.|++|+.+|++.|+||.+..+..  .++.  .+-+|.++
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~--t~~~--~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADF--GILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSC--EEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEee--cCCC--CEEEEEEC
Confidence            4889999999999999999999999999999987  6677  88888664

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.68  E-value=3.8e-05  Score=57.02  Aligned_cols=63  Identities=16%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVK  413 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~  413 (419)
                      -|.|.+.||||+|++|+.+|+++|+||......+...|.. ...-.|++.+.++.       ++++.+.|+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~-~~~~~i~v~~~~~~-------l~~ll~kL~   65 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEH-EGKALIYFEIEGGD-------FEKILERVK   65 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTT-TTEEEEEEEECSSC-------HHHHHHHHH
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeE-EEEEEEEEEcCccc-------HHHHHHHHH
Confidence            5899999999999999999999999999998876444432 14556777655432       245555554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.57  E-value=0.00012  Score=53.29  Aligned_cols=47  Identities=15%  Similarity=-0.034  Sum_probs=41.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEec
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDE  393 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d  393 (419)
                      +|.|.-+||||-|++++++|.+.|+||+.+-+..  .+++  +.-+|-++|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~--~~~~--~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNV--ANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTE--EEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEc--CCCc--EEEEEEECC
Confidence            4778889999999999999999999999999988  5577  888888854

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.45  E-value=0.00043  Score=50.24  Aligned_cols=47  Identities=11%  Similarity=0.123  Sum_probs=41.0

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEec
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITD  158 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~  158 (419)
                      .|.|.-+|+||-|++++++|.+.|+||.+...+. ..++.+-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~-~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEc-CCCcEEEEEEECC
Confidence            4678889999999999999999999999999998 4578877777754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00047  Score=50.95  Aligned_cols=48  Identities=21%  Similarity=0.140  Sum_probs=39.4

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC-CCeEEEEEEE
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP-DGRVLDLFFI  156 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~-~g~~~d~f~V  156 (419)
                      .+.|.+.-.|+||.+++|+++|+++|+||...++.+.. +|.+.-++.+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            45778889999999999999999999999999997654 4556555554

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.23  E-value=0.00074  Score=49.60  Aligned_cols=65  Identities=11%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             eEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCC-eEEEEEEEecCCCCCCchhHHHHHHHHHHHHh
Q 044730          110 YLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDG-RVLDLFFITDGLELLHTKQRREETCEHMIAVL  180 (419)
Q Consensus       110 ~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~vL  180 (419)
                      ..|.+...|+||.|++|++.|+..|+||.+-.+--+.+. ..--++.+..      +++.++++.++|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence            468899999999999999999999999999999865554 3333344432      3567888988888743

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00094  Score=48.91  Aligned_cols=64  Identities=14%  Similarity=0.196  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHHH
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIAV  179 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~v  179 (419)
                      .|.++..|+||.|++|+++|+..|+||.+-.+--+.+....-+-.+..     .+++.++++.++|.+.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-----~~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-----GDEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-----SCHHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-----CCHHHHHHHHHHHhCC
Confidence            578899999999999999999999999999998666554443333333     1456788888888873

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00091  Score=49.23  Aligned_cols=65  Identities=12%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEecCCCCCCchhHHHHHHHHHHH
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFITDGLELLHTKQRREETCEHMIA  178 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~r~~~i~~~L~~  178 (419)
                      ...|.++..|+||.|++|++.|+..|+||.+-.+-.+.+....-+-.+...     +++..+++.++|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g-----~~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-----DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-----CTTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc-----CHHHHHHHHHHHhC
Confidence            357899999999999999999999999999999887666544333333331     24457778777766

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00048  Score=50.80  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ..+.+...|+||+|.+|+.+|++.|+||.+..++.  .-+.  ..-.|-+.- +|    +++..++|..+|.|.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~--te~~--~iSR~tivv-~g----~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGE--SETP--GLSRLVIMV-KG----DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEE--CSST--TEEEEEEEE-EE----CTTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEee--cCCC--CeEEEEEEE-Ec----CHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999987  4355  555554431 12    122346676666554

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0009  Score=49.02  Aligned_cols=65  Identities=12%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          343 PVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       343 ~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      .+.+...|+||+|++|+.+|++.|+||.+..++.  .-+.  ..-.|-+.- .|    +++..++|..+|.|.+
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~--te~~--~iSR~tivv-~~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAP--TDDP--TLSRMTIQT-VG----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEE--CSCS--SEEEEEEEE-ES----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcc--cCCC--CeeEEEEEE-EC----CHHHHHHHHHHHhCCC
Confidence            5788999999999999999999999999999985  3244  555565542 22    3455677877777654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.04  E-value=0.0014  Score=48.14  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 044730          342 NPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKTL  416 (419)
Q Consensus       342 t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~l  416 (419)
                      ..+.+...|+||+|++|+..|++.|+||.+..++.  .-+.  ..-.|-+.- +|    +++..++|..+|.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~--te~~--~iSRmtivv-~~----~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAP--TEDP--TLSRMTLVT-NG----PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEE--CSST--TEEEEEEEE-EE----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEec--cCCC--CeEEEEEEE-EC----CHHHHHHHHHHHhCCc
Confidence            36889999999999999999999999999999986  3244  344443331 12    2455677888877754

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0046  Score=45.95  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=33.9

Q ss_pred             eeEEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecC
Q 044730          109 LYLLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTP  146 (419)
Q Consensus       109 ~~~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~  146 (419)
                      ...|.+.-.|+||.+++|+++|++.|+||.+....+..
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~   48 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSA   48 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCC
Confidence            35788889999999999999999999999999888743

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.91  E-value=0.0035  Score=45.06  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=37.9

Q ss_pred             EEEEEEeCCCChHHHHHHHHHHcCCeEEEEEEEecCCCeEEEEEEEe
Q 044730          111 LLKYCCVDRKGLLHDATKVLTELEFTIQRVKVMTTPDGRVLDLFFIT  157 (419)
Q Consensus       111 ~i~v~~~DrpGLl~~i~~vL~~~g~nI~~A~i~T~~~g~~~d~f~V~  157 (419)
                      .|.|+..||||.|++++++|++.|+||.+-.+..+.+. .+--|.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~-~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADF-GILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCC-CEEEEEEC
Confidence            58899999999999999999999999999999885544 43345444

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0064  Score=45.15  Aligned_cols=36  Identities=14%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 044730          341 ANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGR  376 (419)
Q Consensus       341 ~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T  376 (419)
                      ...+-+.-.|+||+|++|+.+|.+.|+||......+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            457888899999999999999999999999999988

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0026  Score=48.82  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=50.3

Q ss_pred             cceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 044730          340 VANPVELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKKT  415 (419)
Q Consensus       340 ~~t~lev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~~  415 (419)
                      ..|.|-+...|+||-|+++-..|+++|||+.+.+...  ..... -.+.|||. .+|..  ++. .+++.+.|+..
T Consensus        15 ~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP--~~~~~-~~Y~F~id-~eg~~--~~~-i~~~l~~L~~~   83 (97)
T d1phza1          15 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRP--SRLNK-DEYEFFTY-LDKRT--KPV-LGSIIKSLRND   83 (97)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEE--CSSCT-TEEEEEEC-BCGGG--HHH-HHHHHHHHHHT
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeec--cCCCC-ceEEEEEE-cccCC--hHH-HHHHHHHHHHh
Confidence            3578888889999999999999999999999877754  33332 56889995 56752  333 35555555543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.46  E-value=0.0059  Score=44.99  Aligned_cols=63  Identities=11%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 044730          345 ELCGKGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLEFPLASSQARNRIVEKVKK  414 (419)
Q Consensus       345 ev~~~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g~~l~~~~~~~~i~~~l~~  414 (419)
                      -+...|+||-|+++-..|+++|||+.+.+..-. .|..  -.+.|||+ -+|.. . +. .+++.+.|++
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~-~~~~--~~Y~F~id-~~g~~-~-~~-~~~~l~~L~~   68 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSWIESRPL-KTQL--GMYRFFVQ-ADSAI-T-TD-IKKVIAILET   68 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEEEEEEEC-SSST--TCEEEEEE-ESCCS-C-HH-HHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeec-CCCC--ceEEEEEE-EecCC-c-HH-HHHHHHHHHH
Confidence            344569999999999999999999998887641 2333  57999996 45643 3 33 3445555543

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.0074  Score=46.14  Aligned_cols=68  Identities=15%  Similarity=0.165  Sum_probs=46.3

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCcee-EeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 044730          247 PAHTLLQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN-MDLFIRQTDGKKVVDPKQQTALCFHLKE  319 (419)
Q Consensus       247 ~~~t~v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~-~d~F~v~~~g~~i~~~~~~~~l~~~L~~  319 (419)
                      .+.|-|.+..+|+||-|+++...|+++|+|+.+  |.+....+.. .-.|++..+|..  + ...+.+.+.|+.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~--IeSRP~~~~~~~Y~F~id~eg~~--~-~~i~~~l~~L~~   82 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTH--IESRPSRLNKDEYEFFTYLDKRT--K-PVLGSIIKSLRN   82 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTS--EEEEECSSCTTEEEEEECBCGGG--H-HHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEE--EEeeccCCCCceEEEEEEcccCC--h-HHHHHHHHHHHH
Confidence            445667777899999999999999999999988  7665433332 334788877752  2 234444444443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.74  E-value=0.022  Score=41.70  Aligned_cols=49  Identities=29%  Similarity=0.328  Sum_probs=36.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEEeecCcee-EeEEEEecCCC
Q 044730          252 LQIKCADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRN-MDLFIRQTDGK  302 (419)
Q Consensus       252 v~V~~~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~-~d~F~v~~~g~  302 (419)
                      +.+.-.|+||-|+++...|+++|+|+.+  |.+....+.. .=.|+++-+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~--IeSRP~~~~~~~Y~F~id~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFVQADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEEEESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEecC
Confidence            3344579999999999999999999998  7765444433 33488887675

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=90.83  E-value=0.34  Score=33.74  Aligned_cols=48  Identities=19%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCC
Q 044730          343 PVELCG---KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLE  396 (419)
Q Consensus       343 ~lev~~---~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g  396 (419)
                      .+.+.|   .++||+.+++..+|.+.|+||....-++    ..  ..-.|.|.+.+.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~----Se--~~Is~~V~~~d~   53 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS----SE--VNISFVIDEKDL   53 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS----CS--SEEEEEEEGGGH
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC----cc--ceEEEEEeHHHH
Confidence            566776   4899999999999999999998766544    22  566788875543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.42  E-value=0.8  Score=34.33  Aligned_cols=48  Identities=13%  Similarity=0.156  Sum_probs=37.3

Q ss_pred             ceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecC
Q 044730          341 ANPVELCG---KGRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDES  394 (419)
Q Consensus       341 ~t~lev~~---~DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~  394 (419)
                      -+.|.+.|   .++||++++|..+|++.|++|....-++    ..  .--.|.|.+.
T Consensus        15 va~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~----Se--~~Isf~V~~~   65 (100)
T d2hmfa3          15 VALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS----SE--TNISLVVSEE   65 (100)
T ss_dssp             EEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC----TT--CCEEEEECST
T ss_pred             EEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC----Cc--ceEEEEEeHH
Confidence            56788888   5999999999999999999999755434    22  4567888644

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.57  E-value=1.9  Score=31.49  Aligned_cols=48  Identities=17%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             ceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecccCCceeEEEEEEEecCCC
Q 044730          341 ANPVELCGK---GRPRVFYDVTLALKALGICIFSAEIGRHSTSHRQWEVYRFLLDESLE  396 (419)
Q Consensus       341 ~t~lev~~~---DRpGLL~~It~~L~~~gl~I~~A~I~T~~~Ge~~~~~d~F~v~d~~g  396 (419)
                      -+.+.|.+.   ++||++++|..+|++.|+||.....+     +   ..-.|.+.+.+.
T Consensus        13 ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S-----e---~~is~~v~~~~~   63 (91)
T d2cdqa2          13 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS-----E---VSISLTLDPSKL   63 (91)
T ss_dssp             EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE-----T---TEEEEEECCGGG
T ss_pred             EEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec-----C---CeEEEEEchhHH
Confidence            568888875   99999999999999999999986532     2   345677865443

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.65  E-value=2.7  Score=28.82  Aligned_cols=44  Identities=14%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             EEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEEeecCceeEeEEEEe
Q 044730          251 LLQIKC---ADQKGLFYDILRTSKDLNIQIAYGRISSSVKGYRNMDLFIRQ  298 (419)
Q Consensus       251 ~v~V~~---~DrpGLl~~i~~~L~~~~~~I~~A~I~t~t~g~~~~d~F~v~  298 (419)
                      .|.+.+   +++||+.+++..+|++.|+||.-  |+. .. ....=.|.|.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~m--Isq-~~-Se~~Is~~V~   49 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKM--IAQ-GS-SEVNISFVID   49 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCE--EEE-SS-CSSEEEEEEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHH--eee-cC-ccceEEEEEe
Confidence            577777   69999999999999999999997  653 11 2223346665

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.04  E-value=0.58  Score=34.54  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CCeeEEEEEEe---CCCChHHHHHHHHHHcCCeEEEE
Q 044730          107 PSLYLLKYCCV---DRKGLLHDATKVLTELEFTIQRV  140 (419)
Q Consensus       107 ~~~~~i~v~~~---DrpGLl~~i~~vL~~~g~nI~~A  140 (419)
                      .+.+.|++.|.   ++||.+++++.+|++.|+||.--
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~I   47 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV   47 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence            35678999985   99999999999999999999864