Citrus Sinensis ID: 044745
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 753 | 2.2.26 [Sep-21-2011] | |||||||
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.905 | 0.932 | 0.483 | 0.0 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.922 | 0.927 | 0.447 | 1e-160 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.869 | 0.865 | 0.401 | 1e-132 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.893 | 0.868 | 0.374 | 1e-114 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.739 | 0.691 | 0.267 | 1e-30 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.641 | 0.253 | 0.231 | 1e-08 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.641 | 0.253 | 0.236 | 4e-08 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.152 | 0.260 | 0.362 | 4e-08 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.556 | 0.353 | 0.254 | 5e-08 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.644 | 0.247 | 0.230 | 6e-08 |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/712 (48%), Positives = 474/712 (66%), Gaps = 30/712 (4%)
Query: 52 VHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL 111
++IVY+G H+++L++V+G + ++ +YKRSFNGFA KLT+ E +K+
Sbjct: 33 IYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKI 92
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSD 171
ASMEGVVSVF + +LHTTRSWDF+G ++ R+ VES+I+VGV+D+GIWPES SF D
Sbjct: 93 ASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDD 152
Query: 172 EGFGPAPKKWKGACKGGRNFTCNNKIIGARYY------TTDDISGNTARDIQGHGTHTAS 225
EGF P P KWKG C+ NF CN KIIGAR Y + D++G RD GHGTHTAS
Sbjct: 153 EGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVNG--PRDTNGHGTHTAS 210
Query: 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285
TA+G V A+ +G+G GTARGGVP ARIAAYKVC + GC++T IL A+DDAIADGVDI
Sbjct: 211 TAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDI 269
Query: 286 ITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASN 345
I++S+GG N ++ D IAIGSFHA+ +G+LT +SAGN GP +T S++PWL+SVAAS
Sbjct: 270 ISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAST 329
Query: 346 TDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCI 405
DR FV +V +G+GQ+ G SIN+F + + +PLV G D+ + CTD +
Sbjct: 330 MDRKFVTQVQIGNGQSFQGVSINTFDN--QYYPLVSGRDIPNTGFDKSTSRFCTDKS--V 385
Query: 406 DSRLAKGKIVICQSFDGFNEVHKA--GAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNS 463
+ L KGKIV+C++ G +E K+ GA G + ++ + LP+ L+ ++ +
Sbjct: 386 NPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTR--DYADSYPLPSSVLDPNDLLA 443
Query: 464 IYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523
Y+ S + P A I + + ++ APVV FSSRGPN D++KPDIS PGV+ILAA+
Sbjct: 444 TLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 503
Query: 524 ---SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580
+P+G + +R FN++SGTSMSCPH G+A YVK+++P WSP+AIKSA+MTT
Sbjct: 504 PSVAPVGGI------RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 557
Query: 581 AWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGN 640
A PMN+ N AEFA+GSGH+NP++AV PGLVY+ E DY+ LC GY+ + + +I+G+
Sbjct: 558 ASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD 617
Query: 641 ISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIV 700
S C G + DLNYPS VSP ++F F RT+T+V STY+A ++ + +
Sbjct: 618 YSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRA-MISAPQGL 675
Query: 701 SIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPI 752
+I V P LSF L ++KSF++TV +G G +VS SL+WSDG H VRSPI
Sbjct: 676 TISVNPNVLSFNGLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPI 725
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Cucumis melo (taxid: 3656) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 318/711 (44%), Positives = 443/711 (62%), Gaps = 16/711 (2%)
Query: 53 HIVYLGSLFRGEYETSSQHQSILQEV-IGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL 111
+I+YLG ET H ++L + I + V SY ++FN FAAKL+ HE +K+
Sbjct: 38 YIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKM 97
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSD 171
ME VVSV ++ +LHTT+SWDF+GL + R E D+I+GV+D+GI P+SESF D
Sbjct: 98 MEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLD 157
Query: 172 EGFGPAPKKWKGACKGGRNFT-CNNKIIGARYYTTD-DISGNTAR---DIQGHGTHTAST 226
G GP P KWKG+C +NFT CNNKIIGA+Y+ D ++ R DI GHGTHT+ST
Sbjct: 158 HGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSST 217
Query: 227 ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDII 286
+G V +AS +G+ GTARG VPSAR+A YKVC GCA+ IL F+ AI DGV+II
Sbjct: 218 VAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEII 277
Query: 287 TISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNT 346
+IS+G +++ D I++GSFHAM KG+LT+ SAGN GP G+ + PW+++VAAS
Sbjct: 278 SISIG-GPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGI 336
Query: 347 DRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCID 406
DR F K+ LG+G++ G I+ FS K K++PLV G+D ++ + + + C +D
Sbjct: 337 DRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDS--LD 394
Query: 407 SRLAKGKIVICQSFDGFNE--VHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSI 464
+ KGK+++C+ G E + G G++ ++D ++ + + PA ++N + I
Sbjct: 395 RKKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSD-QYLDNAQIFMAPATSVNSSVGDII 453
Query: 465 YSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFS 524
Y Y+ ST+ A I T V AP VA FSSRGPN +LKPDI+APG+DILAAF+
Sbjct: 454 YRYINSTRSASAVIQKTRQVT-IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFT 512
Query: 525 PLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPM 584
+++ D + +KF ++SGTSM+CPH AGVAAYVKSFHPDW+P+AIKSAI+T+A P+
Sbjct: 513 LKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPI 572
Query: 585 NSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNIS-T 643
+ NKDAEFA+G G INP A +PGLVY+ + Y+ LC GY+ + + G S +
Sbjct: 573 SRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVS 632
Query: 644 CPKGSDKATPKDLNYPSMAAQVSPGKSFTIN-FPRTVTNVGLANSTYKAKILQNSKIVSI 702
C LNYP++ + K+ T+ F R VTNVG +S Y A + + K V I
Sbjct: 633 CSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATV-RAPKGVEI 691
Query: 703 KVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
V P+SLSF ++K+SF V V K + G IVS L+W H VRSPIV
Sbjct: 692 TVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIV 742
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 288/717 (40%), Positives = 406/717 (56%), Gaps = 62/717 (8%)
Query: 81 DSSVENV-----LVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQLHTTRSWD 135
DSS+ ++ L+ +Y+ + +GF+ +LT E L + GV+SV P +LHTTR+
Sbjct: 53 DSSLRSISDSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPL 112
Query: 136 FMGLNQ---SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT 192
F+GL++ + + SD++VGV+D+G+WPES+S+SDEGFGP P WKG C+ G NFT
Sbjct: 113 FLGLDEHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFT 172
Query: 193 ---CNNKIIGARYYTT----------DDISGNTARDIQGHGTHTASTASGNEVKDASFFG 239
CN K+IGAR++ + + RD GHGTHT+STA+G+ V+ AS G
Sbjct: 173 ASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLG 232
Query: 240 VGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFT 299
GTARG P AR+A YKVC GC + IL A D AIAD V+++++SLGG + ++
Sbjct: 233 YASGTARGMAPRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYY 290
Query: 300 QDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSG 359
+D +AIG+F AM +G+L SAGN+GP S +VAPW+ +V A DR F +LG+G
Sbjct: 291 RDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNG 350
Query: 360 QTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRL----AKGKIV 415
+ G S+ KG+ P D P + T+G C+ L KGKIV
Sbjct: 351 KNFTGVSL----FKGEALP-----DKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIV 401
Query: 416 ICQSFDGFNE-------VHKAGAEGSVSLNDVEFNK--VSSVVSLPAVALNEDNFNSIYS 466
+C G N V AG G + N + V+ LPA + E + I
Sbjct: 402 MCDR--GINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRH 459
Query: 467 YLKSTKKPEANI-LSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSP 525
Y+ + P A+I + V +PVVA FSSRGPN I P+ILKPD+ APGV+ILAA++
Sbjct: 460 YVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTG 519
Query: 526 LGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMN 585
+ D R+ +FN++SGTSMSCPH +G+AA +KS HP+WSP+AI+SA+MTTA+
Sbjct: 520 AAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTY 579
Query: 586 ---------SSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGK 636
++ F G+GH++P A NPGL+Y+ +DY+ LC++ Y I
Sbjct: 580 KDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRS 639
Query: 637 ISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQN 696
+S TC S + DLNYPS A V ++ + RTVT+VG A TY K+
Sbjct: 640 VSRRNYTCDP-SKSYSVADLNYPSFAVNVDGVGAY--KYTRTVTSVGGAG-TYSVKVTSE 695
Query: 697 SKIVSIKVVPESLSFKSLNEKKSFSVTVT-GKGLPNGAIVSTSLMWSDGNHRVRSPI 752
+ V I V P L+FK NEKKS++VT T P+G+ S+ WSDG H V SP+
Sbjct: 696 TTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 273/729 (37%), Positives = 389/729 (53%), Gaps = 56/729 (7%)
Query: 71 HQSILQEVI-----GDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRT 125
H S LQE + + + L+ SY + GFAA+LT+ E + L VV+V P
Sbjct: 49 HLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHV 108
Query: 126 LQLHTTRSWDFMGL----NQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKW 181
LQ+ TT S+ F+GL N + K I+GV+D+G+WPES SF D G P+KW
Sbjct: 109 LQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKW 168
Query: 182 KGACKGGRNFT---CNNKIIGARYYTTDDISGNT-------------ARDIQGHGTHTAS 225
KG C+ G +F+ CN K+IGAR++ N+ ARD GHGTHTAS
Sbjct: 169 KGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTAS 228
Query: 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285
T G+ V A+ G G G ARG P A IA YKVC GC + IL A D AI D VD+
Sbjct: 229 TVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDV 287
Query: 286 ITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASN 345
+++SLGG + D IAIG+F AM +G+ + +AGN+GP S + APW+ ++ A
Sbjct: 288 LSLSLGG-FPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGT 346
Query: 346 TDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCI 405
DR F V L +G+ L G S+ + KG + ++V D + C +G +
Sbjct: 347 LDRRFPAVVRLANGKLLYGESL--YPGKGIKNAGRE-VEVIYVTGGDKGSEFCL--RGSL 401
Query: 406 DSRLAKGKIVIC-QSFDGFNEVHKAGAEG---SVSLNDVEFNKVSSVVS---LPAVALNE 458
+GK+VIC + +G +E +A E ++ L + E N+ + LPA +
Sbjct: 402 PREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGY 461
Query: 459 DNFNSIYSYLKSTKKPEANIL-STEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517
+ +Y+ +T KP+A I+ + S AP VA FS+RGP+ P ILKPD+ APGV
Sbjct: 462 TESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGV 521
Query: 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAI 577
+I+AA+ + P D R+ F V+SGTSMSCPH +G+ A ++S +P+WSP+AIKSA+
Sbjct: 522 NIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSAL 581
Query: 578 MTTA--WPMNSSKNKDAE-----FAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYD 630
MTTA + KD FA G+GH+NP +A+NPGLVY DYI LC++G+
Sbjct: 582 MTTADLYDRQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFT 641
Query: 631 ERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYK 690
+I I+ +C K LNYPS+A GK+ T R VTNVG NS Y
Sbjct: 642 RSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKT-TEMITRRVTNVGSPNSIYS 700
Query: 691 AKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVST----SLMWSDGN- 745
+ + + + + V P+ L FK +++ S+ V K G V++ L W + +
Sbjct: 701 VNV-KAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHN 759
Query: 746 --HRVRSPI 752
RVRSPI
Sbjct: 760 LMQRVRSPI 768
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 178/666 (26%), Positives = 294/666 (44%), Gaps = 109/666 (16%)
Query: 3 KNGFLLFNFLSFILFLPMS--ILG------GAITSQDDRKAS----MDICFSALVVLNFL 50
K G + F +SF+LF +S I G + TS D KA +D+ S +
Sbjct: 2 KKGIIRFLLVSFVLFFALSTGITGVQAAPASSKTSADLEKAEVFGDIDMTTSKKTTVIVE 61
Query: 51 MVHIVYLGSLFRGEYETSSQHQSILQEVIGDS--SVENVLV-RSYKRSFNGFAAKLTDHE 107
+ + GE ++ S+ ++ + + +V+N V R Y++ F+GF+ KL +E
Sbjct: 62 LKEKSLAEAKEAGESQSKSKLKTARTKAKNKAIKAVKNGKVNREYEQVFSGFSMKLPANE 121
Query: 108 RQKLASMEGVVSVFPSRTLQLHTTRSWD-----------------FMGLNQSITRKRSVE 150
KL +++ V +V+P+ T + + D ++G N + + +
Sbjct: 122 IPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSAPYIGANDAWDLGYTGK 181
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
I V +ID+G+ E P KK G KG +F N+ Y + +G
Sbjct: 182 G-IKVAIIDTGV---------EYNHPDLKKNFGQYKG-YDFVDND------YDPKETPTG 224
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
+ + HGTH A T + N GT +G P A + AY+V P
Sbjct: 225 DPRGEATDHGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGPGGSGTTEN 272
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
++ + A+ DG D++ +SLG N+LN + AM++GV+ + S GNSGP
Sbjct: 273 VIAGVERAVQDGADVMNLSLG--NSLNNPDWATSTALDWAMSEGVVAVTSNGNSGP---- 326
Query: 331 TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCE 390
W + ++ + + V L + V + S+SS K DV
Sbjct: 327 ----NGWTVGSPGTSREAISVGATQLPLNEYAV--TFGSYSS-AKVMGYNKEDDVK--AL 377
Query: 391 SDFDPQLCTDGQGC---IDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF 442
++ + +L G G + + GK+ + + D + KAGA G V N++
Sbjct: 378 NNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSG 437
Query: 443 NKVSSV--VSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGP 500
++V +S+P + L+ ++ + S LK+ + L+ V + VADFSSRGP
Sbjct: 438 EIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKLT---VSKALGEQVADFSSRGP 494
Query: 501 NEIVPD--ILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVA 558
V D ++KPDISAPGV+I++ + DP+ + GTSM+ PH AG
Sbjct: 495 ---VMDTWMIKPDISAPGVNIVSTIP-----THDPD--HPYGYGSKQGTSMASPHIAGAV 544
Query: 559 AYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNK----DAEFAFGSGHINPVEA---VNPG- 610
A +K P WS IK+AIM TA + S + +A+ A + +N ++A V+PG
Sbjct: 545 AVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEVYPHNAQGAGSARIMNAIKADSLVSPGS 604
Query: 611 LVYETF 616
Y TF
Sbjct: 605 YSYGTF 610
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 140/605 (23%), Positives = 233/605 (38%), Gaps = 122/605 (20%)
Query: 61 FRGEYETSSQHQSILQEVIG-----DSSVENVLVRSYKRSF----NGFAAKLTDHERQKL 111
R +Y ++++ Q +VI ++VE V ++ S+ NGF+ K+ + KL
Sbjct: 110 LRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKL 169
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESES--F 169
+ GV +V ++ ++ + + + +V VID+GI P +
Sbjct: 170 KQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDTGIDPTHKDMRL 229
Query: 170 SDEGFGPAPK----KWKGACKGGRNFTCNNKI-IGARYYTTDDISGNTARDIQGHGTHTA 224
SD+ K K+ K GR FT K+ G Y +D + D Q HG H A
Sbjct: 230 SDDKDVKLTKYDVEKFTDTAKHGRYFTS--KVPYGFNYADNNDTITDDTVDEQ-HGMHVA 286
Query: 225 STASGNEVKD---ASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA---ILGAFDDA 278
N D S GV P A++ A KV + A T ++ A +D+
Sbjct: 287 GIIGANGTGDDPTKSVVGV--------APEAQLLAMKVFTNSDTSATTGSATLVSAIEDS 338
Query: 279 IADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG------------- 325
G D++ +SLG + +D +A G + SAGNSG
Sbjct: 339 AKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGSATQGVNKDY 398
Query: 326 ------PFIGSTVSVAPWLMSVAASNTDRL-----FVDKVVLGSGQTLVGYSINSFSS-- 372
+G+ + +A NTD + D L G + S N F+
Sbjct: 399 YGLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSF 458
Query: 373 KGKTFPLVDGM--DVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFD-GFNEVHK- 428
K F +V D+S+ +D+ + AKGKI I + + F + K
Sbjct: 459 DQKKFYVVKDASGDLSKGAAADY-------------TADAKGKIAIVKRGELNFADKQKY 505
Query: 429 ---AGAEGSVSLND----VEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI--- 478
AGA G + +N+ + + P L+ + ++ T P+ ++
Sbjct: 506 AQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDWV--TAHPDDSLGVK 563
Query: 479 --LSTEAVKDSEAPVVADFSSRGPNEIVPDI-LKPDISAPGVDILAAFSPLGAVSDDPED 535
L+ + ++DF+S GP V ++ KPDI+APG +I + + G
Sbjct: 564 IALTLLPNQKYTEDKMSDFTSYGP---VSNLSFKPDITAPGGNIWSTQNNNG-------- 612
Query: 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKS--------FHPDWSP-------SAIKSAIMTT 580
+ +SGTSM+ P AG A +K F+ D+ +K+ M T
Sbjct: 613 -----YTNMSGTSMASPFIAGSQALLKQALNNKNNPFYADYKQLKGTALTDFLKTVEMNT 667
Query: 581 AWPMN 585
A P+N
Sbjct: 668 AQPIN 672
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 143/605 (23%), Positives = 239/605 (39%), Gaps = 122/605 (20%)
Query: 61 FRGEYETSSQHQSILQEVIG-----DSSVENVLVRSYKRSF----NGFAAKLTDHERQKL 111
R +Y ++++ Q +VI ++VE V ++ S+ NGF+ K+ + KL
Sbjct: 110 LRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKL 169
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESES--F 169
+ GV +V ++ ++ + + + +V VIDSGI P +
Sbjct: 170 KQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRL 229
Query: 170 SDEGFGPAPK----KWKGACKGGRNFTCNNKI-IGARYYTTDDISGNTARDIQGHGTHTA 224
SD+ K K+ K GR F N+K+ G Y +D + D Q HG H A
Sbjct: 230 SDDKDVKLTKSDVEKFTDTAKHGRYF--NSKVPYGFNYADNNDTITDDTVDEQ-HGMHVA 286
Query: 225 STASGNEVKDASFFGVGQGTAR---GGVPSARIAAYKVCSPELGCAETA---ILGAFDDA 278
N G G A+ G P A++ A KV + A T ++ A +D+
Sbjct: 287 GIIGAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDS 338
Query: 279 IADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG------------- 325
G D++ +SLG + +D +A G + SAGNSG
Sbjct: 339 AKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDY 398
Query: 326 ------PFIGSTVSVAPWLMSVAASNTDRL-----FVDKVVLGSGQTLVGYSINSFSS-- 372
+G+ + +A NTD + D L G + S N F+
Sbjct: 399 YGLQDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPGTIQLSSNDFTGSF 458
Query: 373 KGKTFPLVDGM--DVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQ----SFDGFNE- 425
K F +V ++S+ +D+ + AKGKI I + SFD +
Sbjct: 459 DQKKFYVVKDASGNLSKGALADY-------------TADAKGKIAIVKRGELSFDDKQKY 505
Query: 426 VHKAGAEGSVSL-NDVEFNKVSSV---VSLPAVALNEDNFNSIYSYLKSTKKPEANI--- 478
AGA G + + ND V+S+ + P L+ + ++ T P+ ++
Sbjct: 506 AQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWV--TAHPDDSLGVK 563
Query: 479 --LSTEAVKDSEAPVVADFSSRGPNEIVPDI-LKPDISAPGVDILAAFSPLGAVSDDPED 535
L+ + ++DF+S GP V ++ KPDI+APG +I + + G
Sbjct: 564 IALTLVPNQKYTEDKMSDFTSYGP---VSNLSFKPDITAPGGNIWSTQNNNG-------- 612
Query: 536 KRQAKFNVVSGTSMSCPHAAGVAAYVK-----------SFHPDWSPSA----IKSAIMTT 580
+ +SGTSM+ P AG A +K +++ +A +K+ M T
Sbjct: 613 -----YTNMSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNT 667
Query: 581 AWPMN 585
A P+N
Sbjct: 668 AQPIN 672
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
Query: 487 SEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR-QAKFNVVS 545
S+ VA FSSRGP V KPDI APGV+I++ SP + + R +++ +S
Sbjct: 324 SDDDTVASFSSRGPT--VYGKEKPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMS 381
Query: 546 GTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIM--TTAWPMNSSKNKDAEFAFGSGHINP 603
GTSM+ P AG+AA + +PD +P +K + T W K++D +G+G +N
Sbjct: 382 GTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDKW-----KDEDPNI-YGAGAVNA 435
Query: 604 VEAVNPG 610
+V PG
Sbjct: 436 ENSV-PG 441
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 129/507 (25%), Positives = 199/507 (39%), Gaps = 88/507 (17%)
Query: 122 PSRTLQLHTTRSWDFMGLN-----QSITRKRSVESDIIVGVIDSGIWPESESF------- 169
P++T T LN +++ K + +V VID+G E++
Sbjct: 88 PAKTTDTPATSKATIRDLNDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTK 147
Query: 170 ----SDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAS 225
S E A KK G G N+KI Y+ D G TA D Q HGTH +
Sbjct: 148 ARYQSKEDLEKA-KKEHGITYGEW---VNDKIAYYHDYSKD---GKTAVD-QEHGTHVSG 199
Query: 226 TASGN---EVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL--GCAETA--ILGAFDDA 278
SGN E K+ G +P A++ +V E+ G A+ A A DA
Sbjct: 200 ILSGNAPSETKEPYRL-------EGAMPEAQLLLMRV---EIVNGLADYARNYAQAIRDA 249
Query: 279 IADGVDIITISLGGQNTLNFTQ--DVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAP 336
+ G +I +S G L + D +A +KGV + SAGN F G T
Sbjct: 250 VNLGAKVINMSFGNA-ALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKT----- 303
Query: 337 WLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCES--DFD 394
+ +A + S T+ YS + ++ T D D P S F+
Sbjct: 304 -RLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFE 362
Query: 395 PQLCTD------GQGCIDSRLAKGKIVICQ--SFDGFNEVHKAGAEGSVSLNDVEFNKVS 446
P D G D + KGKI + + D +++ A G+V + +
Sbjct: 363 PNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKG 422
Query: 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANIL---STEAVKDSEAPVVADFSSRGPNEI 503
+ LP V F S L + P+ I + + + + ++ FSS G +
Sbjct: 423 FPIELPNVDQMPAAFISRKDGLLLKENPQKTITFNATPKVLPTASGTKLSRFSSWG---L 479
Query: 504 VPD-ILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVK 562
D +KPDI+APG DIL++ + K+ +SGTSMS P AG+ ++
Sbjct: 480 TADGNIKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQ 526
Query: 563 ----SFHPDWSPSA----IKSAIMTTA 581
+ +PD +PS K +M++A
Sbjct: 527 KQYETQYPDMTPSERLDLAKKVLMSSA 553
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 139/603 (23%), Positives = 235/603 (38%), Gaps = 118/603 (19%)
Query: 61 FRGEYETSSQHQSILQEVIG-----DSSVENVLVRSYKRSF----NGFAAKLTDHERQKL 111
R +Y ++++ Q +VI ++VE V ++ S+ NGF+ K+ + KL
Sbjct: 110 LRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKL 169
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESES--F 169
+ GV +V ++ ++ + + + +V VIDSGI P +
Sbjct: 170 KQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRL 229
Query: 170 SDEGFGPAPK----KWKGACKGGRNFTCNNKI-IGARYYTTDDISGNTARDIQGHGTHTA 224
SD+ K K+ K GR F N+K+ G Y +D + D Q HG H A
Sbjct: 230 SDDKDVKLTKSDVEKFTDTAKHGRYF--NSKVPYGFNYADNNDTITDDTVDEQ-HGMHVA 286
Query: 225 STASGNEVKDASFFGVGQGTAR---GGVPSARIAAYKVCSPELGCAETA---ILGAFDDA 278
N G G A+ G P A++ A KV + A T ++ A +D+
Sbjct: 287 GIIGAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDS 338
Query: 279 IADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG------------- 325
G D++ +SLG + +D +A G + SAGNSG
Sbjct: 339 AKIGADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDY 398
Query: 326 ------PFIGSTVSVAPWLMSVAASNTDRL-----FVDKVVLGSGQTLVGYSINSFSS-- 372
+GS + +A NTD + D L G + S + F+
Sbjct: 399 YGLQDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSHDFTGSF 458
Query: 373 KGKTFPLVDGM--DVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQ----SFDGFNE- 425
K F +V ++S+ +D+ + AKGKI I + SFD +
Sbjct: 459 DQKKFYIVKDASGNLSKGALADY-------------TADAKGKIAIVKRGEFSFDDKQKY 505
Query: 426 VHKAGAEGSVSLND----VEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILST 481
AGA G + +N ++ + P L+ + ++ + + T
Sbjct: 506 AQAAGAAGLIIVNTDGTATPMTSIALTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKIT 565
Query: 482 EAVKDSEAPV---VADFSSRGPNEIVPDI-LKPDISAPGVDILAAFSPLGAVSDDPEDKR 537
A+ ++ ++DF+S GP V ++ KPDI+APG +I + + G
Sbjct: 566 LAMLPNQKYTEDKMSDFTSYGP---VSNLSFKPDITAPGGNIWSTQNNNG---------- 612
Query: 538 QAKFNVVSGTSMSCPHAAGVAAYVK-----------SFHPDWSPSA----IKSAIMTTAW 582
+ +SGTSM+ P AG A +K +++ +A +K+ M TA
Sbjct: 613 ---YTNMSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQ 669
Query: 583 PMN 585
P+N
Sbjct: 670 PIN 672
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 753 | ||||||
| 224106379 | 710 | predicted protein [Populus trichocarpa] | 0.915 | 0.970 | 0.641 | 0.0 | |
| 359478595 | 717 | PREDICTED: cucumisin-like [Vitis vinifer | 0.920 | 0.966 | 0.607 | 0.0 | |
| 297745991 | 705 | unnamed protein product [Vitis vinifera] | 0.922 | 0.985 | 0.606 | 0.0 | |
| 225434782 | 737 | PREDICTED: cucumisin-like [Vitis vinifer | 0.920 | 0.940 | 0.600 | 0.0 | |
| 297745988 | 1472 | unnamed protein product [Vitis vinifera] | 0.928 | 0.474 | 0.594 | 0.0 | |
| 255558936 | 2072 | peptidase, putative [Ricinus communis] g | 0.916 | 0.333 | 0.614 | 0.0 | |
| 359478633 | 740 | PREDICTED: cucumisin [Vitis vinifera] | 0.956 | 0.972 | 0.577 | 0.0 | |
| 297746066 | 703 | unnamed protein product [Vitis vinifera] | 0.916 | 0.981 | 0.602 | 0.0 | |
| 296083990 | 741 | unnamed protein product [Vitis vinifera] | 0.924 | 0.939 | 0.577 | 0.0 | |
| 359479070 | 744 | PREDICTED: cucumisin-like [Vitis vinifer | 0.920 | 0.931 | 0.579 | 0.0 |
| >gi|224106379|ref|XP_002314147.1| predicted protein [Populus trichocarpa] gi|222850555|gb|EEE88102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/701 (64%), Positives = 539/701 (76%), Gaps = 12/701 (1%)
Query: 53 HIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLA 112
+IVY+GSL GEY SS H S+LQEV+ DSS ENVLVRSYKRSFNGF+AKLT E QKL
Sbjct: 7 YIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQKLV 66
Query: 113 SMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDE 172
S + VVS+FPS TLQL TTRSWDFMG N + + KR SDIIVGVID+GIWPESESF+D+
Sbjct: 67 SKKEVVSIFPSTTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESFNDD 126
Query: 173 GFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232
GFGP P+KW+GAC+GG NFTCNNKIIGAR+Y S ++ARD GHG+HTASTA+GN V
Sbjct: 127 GFGPPPRKWRGACEGGENFTCNNKIIGARHY-----SFSSARDDLGHGSHTASTAAGNIV 181
Query: 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGG 292
K ASF+G+ QGTARGGVPSARI+AYKVC P C + IL AFDDAIADGVDIITIS+GG
Sbjct: 182 KKASFYGLAQGTARGGVPSARISAYKVCGPG-SCQSSDILSAFDDAIADGVDIITISIGG 240
Query: 293 QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVD 352
F DVIAIG FH+MAKG+LTL SAGN GP GS SVAPW+ +VAAS+TDR +D
Sbjct: 241 NQAQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVSGSVASVAPWIFTVAASSTDRRIID 300
Query: 353 KVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKG 412
KVVLG+G+TLVG S+NSFS KGK FPLV G SR C+ + LC GC+D L KG
Sbjct: 301 KVVLGNGKTLVGNSVNSFSLKGKKFPLVYGKGASRECK-HLEASLCY--SGCLDRTLVKG 357
Query: 413 KIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTK 472
KIV+C +G E +AGA G++ + F +S ++ LP ++L ED N++ SYL STK
Sbjct: 358 KIVLCDDVNGRTEAKRAGALGAIL--PISFEDISFILPLPGLSLTEDKLNAVKSYLNSTK 415
Query: 473 KPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532
KP ANIL +EA+KD+ AP VA FSSRGPN I+ DILKPD SAPGVDILAAF P+ + +DD
Sbjct: 416 KPSANILKSEAIKDNAAPEVASFSSRGPNPIISDILKPDASAPGVDILAAFPPVLSPTDD 475
Query: 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDA 592
DKR K++V+SGTSM+CPHAAGVAA+VK+ HPDWS SAIKSAIMTTAWPMN ++ +
Sbjct: 476 TADKRHVKYSVMSGTSMACPHAAGVAAHVKAAHPDWSASAIKSAIMTTAWPMNVTERSEG 535
Query: 593 EFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKAT 652
EFAFGSGH+NPV A++PGLVYET + DYI + C +GY I +ISG+ S+C K +
Sbjct: 536 EFAFGSGHVNPVTAIHPGLVYETQKSDYIQLFCGLGYTAEKIRQISGDNSSCSKAARNTL 595
Query: 653 PKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFK 712
P+DLNYPSMAA+V+ +SFTI F RTVTNVG ANSTYKAKI S + IKVVPE+LSFK
Sbjct: 596 PRDLNYPSMAAKVAVEESFTIKFHRTVTNVGNANSTYKAKIFSRSSL-KIKVVPEALSFK 654
Query: 713 SLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
SL EKKSF+VT+ G+ L +I+S SL+WSDG+H VRSPIV
Sbjct: 655 SLKEKKSFAVTIVGRDLTYNSILSASLVWSDGSHSVRSPIV 695
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478595|ref|XP_002280372.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/704 (60%), Positives = 542/704 (76%), Gaps = 11/704 (1%)
Query: 52 VHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL 111
V+IVYLGSL +GE+ SQH +IL++V+ SS + LVRSYKRSFNGFAAKLT+ ER+KL
Sbjct: 15 VYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREKL 74
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSD 171
+ +GVVS+FPS LQL TTRSWDFMGL+++I RK +VESD+IVGVID+GIWPES SFSD
Sbjct: 75 CNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFSD 134
Query: 172 EGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231
EGFGP PKKWKG C GG+NFTCN K+IGA+ Y + + ++ RD GHG+HTASTA+GN+
Sbjct: 135 EGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGNK 194
Query: 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLG 291
+K ASF+GV +G+ARGGVPSARIA YKVC + GCA+ IL AFDDAI+DGVDII++SLG
Sbjct: 195 IKGASFYGVAEGSARGGVPSARIAVYKVCF-QSGCADADILAAFDDAISDGVDIISVSLG 253
Query: 292 GQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFV 351
++ N +D +AIGSFHAMAKG+LTL+SAGN GP S SVAPW++SVAAS TDR +
Sbjct: 254 KRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQII 313
Query: 352 DKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAK 411
KVVLG+G TL G SIN+F G FPLV G D +R C+ +++ QLC+ C++ L +
Sbjct: 314 TKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCD-EYEAQLCS--GDCLERSLVE 370
Query: 412 GKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKST 471
GKI++C+S G + H+AGA GS+S EF+ V S+V P LNE+ F I +Y ST
Sbjct: 371 GKIILCRSITGDRDAHEAGAVGSISQ---EFD-VPSIVPFPISTLNEEEFRMIETYYIST 426
Query: 472 KKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSD 531
K P+ANIL +E+ KDS APVVA FSSRGPN I+P+ILKPDI+APGVDILAA+SP+ V+D
Sbjct: 427 KNPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPVTD 486
Query: 532 DPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKD 591
+ EDKR K+ ++SGTSMSCPH AG+AAY+K+FHPDWSPSAI+SA++TTAWPMN + D
Sbjct: 487 EAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTYDD 546
Query: 592 AEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKA 651
E AFGSGH++PV+AV+PGLVYE + DYI M+CSMGYD + + +SG+ S+CPK + K
Sbjct: 547 GELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDT-KG 605
Query: 652 TPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSF 711
+PKDLNYPSMA +V KSF + FPRTVTN G ANSTYKA ++ + + ++V P+ LSF
Sbjct: 606 SPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDILSF 665
Query: 712 KSLNEKKSFSVTVTGKGLPN--GAIVSTSLMWSDGNHRVRSPIV 753
K EKKSF VTV G+GL + I + SL+WSDG H VRSPIV
Sbjct: 666 KLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIV 709
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745991|emb|CBI16047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/706 (60%), Positives = 543/706 (76%), Gaps = 11/706 (1%)
Query: 50 LMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQ 109
+ V+IVYLGSL +GE+ SQH +IL++V+ SS + LVRSYKRSFNGFAAKLT+ ER+
Sbjct: 1 MQVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKERE 60
Query: 110 KLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESF 169
KL + +GVVS+FPS LQL TTRSWDFMGL+++I RK +VESD+IVGVID+GIWPES SF
Sbjct: 61 KLCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSF 120
Query: 170 SDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229
SDEGFGP PKKWKG C GG+NFTCN K+IGA+ Y + + ++ RD GHG+HTASTA+G
Sbjct: 121 SDEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAG 180
Query: 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITIS 289
N++K ASF+GV +G+ARGGVPSARIA YKVC + GCA+ IL AFDDAI+DGVDII++S
Sbjct: 181 NKIKGASFYGVAEGSARGGVPSARIAVYKVCF-QSGCADADILAAFDDAISDGVDIISVS 239
Query: 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRL 349
LG ++ N +D +AIGSFHAMAKG+LTL+SAGN GP S SVAPW++SVAAS TDR
Sbjct: 240 LGKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQ 299
Query: 350 FVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRL 409
+ KVVLG+G TL G SIN+F G FPLV G D +R C+ +++ QLC+ C++ L
Sbjct: 300 IITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCD-EYEAQLCSG--DCLERSL 356
Query: 410 AKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469
+GKI++C+S G + H+AGA GS+S EF+ V S+V P LNE+ F I +Y
Sbjct: 357 VEGKIILCRSITGDRDAHEAGAVGSISQ---EFD-VPSIVPFPISTLNEEEFRMIETYYI 412
Query: 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAV 529
STK P+ANIL +E+ KDS APVVA FSSRGPN I+P+ILKPDI+APGVDILAA+SP+ V
Sbjct: 413 STKNPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPV 472
Query: 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN 589
+D+ EDKR K+ ++SGTSMSCPH AG+AAY+K+FHPDWSPSAI+SA++TTAWPMN +
Sbjct: 473 TDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTY 532
Query: 590 KDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSD 649
D E AFGSGH++PV+AV+PGLVYE + DYI M+CSMGYD + + +SG+ S+CPK +
Sbjct: 533 DDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDT- 591
Query: 650 KATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESL 709
K +PKDLNYPSMA +V KSF + FPRTVTN G ANSTYKA ++ + + ++V P+ L
Sbjct: 592 KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDIL 651
Query: 710 SFKSLNEKKSFSVTVTGKGLPN--GAIVSTSLMWSDGNHRVRSPIV 753
SFK EKKSF VTV G+GL + I + SL+WSDG H VRSPIV
Sbjct: 652 SFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIV 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434782|ref|XP_002280283.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/703 (60%), Positives = 524/703 (74%), Gaps = 10/703 (1%)
Query: 52 VHIVYLGSLFRGE-YETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V++VYLG L + Y Q SIL V+ SS+ VRSY++SFNGFAA+LTD E+++
Sbjct: 34 VYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKER 93
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFS 170
LA+ME VVS+FPS+TLQ T+RSWDFMG +SI R+ VESD+I+GV D+GIWPESESFS
Sbjct: 94 LANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESFS 153
Query: 171 DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGN 230
D+GFGP P+KW+G C+GG+NFTCNNK+IGAR Y N RDI GHGTHTASTA+GN
Sbjct: 154 DKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAAGN 213
Query: 231 EVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISL 290
V ASFFGV +GTARGGVPSARIAAYKVC P GC E I+ AFDDAIADGVDIITISL
Sbjct: 214 PVT-ASFFGVAKGTARGGVPSARIAAYKVCHPS-GCEEADIMAAFDDAIADGVDIITISL 271
Query: 291 GGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLF 350
G ++FT D IAIG+FHAM KG+LT++SAGN+GP + V VAPWL+SVAAS+TDR
Sbjct: 272 GLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRRI 331
Query: 351 VDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLA 410
+ KV+LG G L G +INSF +G+ FPLV G D + C++ F Q C C+DS+L
Sbjct: 332 ISKVILGDGTRLTGAAINSFQLRGEKFPLVYGKDATSKCDA-FSAQRCI--SKCLDSKLV 388
Query: 411 KGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKS 470
KGKIV+CQ+F G E KAGA G++ LND + VS +V LPA AL FN + SY+ S
Sbjct: 389 KGKIVVCQAFWGLQEAFKAGAVGAILLNDFQ-TDVSFIVPLPASALRPKRFNKLLSYINS 447
Query: 471 TKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS 530
TK PEA IL + + KD+ APVVA FSSRGPN I+P+ILKPDISAPGVDILAAFSPL + S
Sbjct: 448 TKSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAFSPLASPS 507
Query: 531 DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNK 590
+ DKR A++N++SGTSM+CPH AGVAAYVK+FHP+WSPSAI+SA+MTTAW MN+++
Sbjct: 508 EISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWRMNATRTP 567
Query: 591 DAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDK 650
D E A+GSGH+NPV+A++PGL+Y +QDY+ MLC MGYD +N+ I+G S CPK S
Sbjct: 568 DGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQCPKNSTF 627
Query: 651 ATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLS 710
+ KDLNYPSMA +V P K F + FPR V NVG A S YKA++ S + ++V+P LS
Sbjct: 628 SA-KDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVRVIPNVLS 686
Query: 711 FKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
F+SL E+K F V+V GKGL + S SL+WSDG H V+SPIV
Sbjct: 687 FRSLYEEKHFVVSVVGKGLE--LMESASLVWSDGRHLVKSPIV 727
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745988|emb|CBI16044.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/710 (59%), Positives = 528/710 (74%), Gaps = 11/710 (1%)
Query: 45 VVLNFLMVHIVYLGSLFRGE-YETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKL 103
+ L + V++VYLG L + Y Q SIL V+ SS+ VRSY++SFNGFAA+L
Sbjct: 763 IALPIIQVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARL 822
Query: 104 TDHERQKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIW 163
TD E+++LA+ME VVS+FPS+TLQ T+RSWDFMG +SI R+ VESD+I+GV D+GIW
Sbjct: 823 TDREKERLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIW 882
Query: 164 PESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHT 223
PESESFSD+GFGP P+KW+G C+GG+NFTCNNK+IGAR Y N RDI GHGTHT
Sbjct: 883 PESESFSDKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHT 942
Query: 224 ASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGV 283
ASTA+GN V ASFFGV +GTARGGVPSARIAAYKVC P GC E I+ AFDDAIADGV
Sbjct: 943 ASTAAGNPVT-ASFFGVAKGTARGGVPSARIAAYKVCHPS-GCEEADIMAAFDDAIADGV 1000
Query: 284 DIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAA 343
DIITISLG ++FT D IAIG+FHAM KG+LT++SAGN+GP + V VAPWL+SVAA
Sbjct: 1001 DIITISLGLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAA 1060
Query: 344 SNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQG 403
S+TDR + KV+LG G L G +INSF +G+ FPLV G D + C++ F Q +
Sbjct: 1061 SSTDRRIISKVILGDGTRLTGAAINSFQLRGEKFPLVYGKDATSKCDA-FSAQCISK--- 1116
Query: 404 CIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNS 463
C+DS+L KGKIV+CQ+F G E KAGA G++ LND + + VS +V LPA AL FN
Sbjct: 1117 CLDSKLVKGKIVVCQAFWGLQEAFKAGAVGAILLNDFQTD-VSFIVPLPASALRPKRFNK 1175
Query: 464 IYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523
+ SY+ STK PEA IL + + KD+ APVVA FSSRGPN I+P+ILKPDISAPGVDILAAF
Sbjct: 1176 LLSYINSTKSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAF 1235
Query: 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP 583
SPL + S+ DKR A++N++SGTSM+CPH AGVAAYVK+FHP+WSPSAI+SA+MTTAW
Sbjct: 1236 SPLASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWR 1295
Query: 584 MNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNIST 643
MN+++ D E A+GSGH+NPV+A++PGL+Y +QDY+ MLC MGYD +N+ I+G S
Sbjct: 1296 MNATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQ 1355
Query: 644 CPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIK 703
CPK S + KDLNYPSMA +V P K F + FPR V NVG A S YKA++ S + ++
Sbjct: 1356 CPKNS-TFSAKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVR 1414
Query: 704 VVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
V+P LSF+SL E+K F V+V GKGL + S SL+WSDG H V+SPIV
Sbjct: 1415 VIPNVLSFRSLYEEKHFVVSVVGKGLE--LMESASLVWSDGRHLVKSPIV 1462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558936|ref|XP_002520491.1| peptidase, putative [Ricinus communis] gi|223540333|gb|EEF41904.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/700 (61%), Positives = 535/700 (76%), Gaps = 10/700 (1%)
Query: 50 LMVHIVYLGSLFRGEYETSSQHQSILQEVI-GDSSVENVLVRSYKRSFNGFAAKLTDHER 108
L +HIVY+GSL + EY S H S+LQEV SS+EN+LV SY+RSFNGFAAKL+D E
Sbjct: 4 LQLHIVYMGSLPKVEYSPLSHHLSLLQEVTESSSSIENLLVTSYRRSFNGFAAKLSDFEA 63
Query: 109 QKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESES 168
QKLASM+ VVSVFPSR L L TTRSW FMGL++ R ES++IVGV+D+GIWPESES
Sbjct: 64 QKLASMKEVVSVFPSRILDLQTTRSWSFMGLDEGARRNPIAESNVIVGVMDTGIWPESES 123
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GF P PK WKG+C GG NFTCNNKIIGARYY + + +ARD GHGTHTASTA+
Sbjct: 124 FSDKGFSPPPKNWKGSCNGGLNFTCNNKIIGARYYNSTQLRIISARDDVGHGTHTASTAA 183
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN+V DASFFG+ +GTARGGVPSARI+AY+VCS E GC+ +L AFDDAIADGVDIITI
Sbjct: 184 GNKVMDASFFGIARGTARGGVPSARISAYRVCSVE-GCSGAEVLAAFDDAIADGVDIITI 242
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
S+G LN+ +D IAIG+FHAM KG+ SAGN+G IGS SVAPW+++VAAS+ DR
Sbjct: 243 SVGPSYALNYYEDPIAIGAFHAMEKGIFVSQSAGNNGVQIGSVSSVAPWILTVAASSKDR 302
Query: 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSR 408
+DKVVLG+G+TL G SINSF+ KG+ FPL+ G+ S C +F ++C GC+D+
Sbjct: 303 RIIDKVVLGNGKTLTGTSINSFALKGENFPLIYGIGASATCTPEF-ARVCQ--LGCLDAS 359
Query: 409 LAKGKIVICQSFDGFNEVHKAGAEGSV-SLNDVEFNKVSSVVSLPAVALNEDNFNSIYSY 467
L KGKIV+C G E+ + GA GS+ + N +E V+ V S P ++LN+DN ++ SY
Sbjct: 360 LVKGKIVLCDDSRGHFEIERVGAVGSILASNGIE--DVAFVASSPFLSLNDDNIAAVKSY 417
Query: 468 LKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLG 527
+ ST +P ANIL +EA+ DS APVVA FSSRGPN I D+LKPDISAPG++ILAAF
Sbjct: 418 INSTSQPVANILKSEAINDSSAPVVASFSSRGPNLIALDLLKPDISAPGIEILAAFPTNI 477
Query: 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587
++ D RQ KFN+VSGTSMSCPHAAGVAAYVKSFHP+WSPSAIKSAIMTTA PMN++
Sbjct: 478 PPTESLHDNRQVKFNIVSGTSMSCPHAAGVAAYVKSFHPEWSPSAIKSAIMTTASPMNAT 537
Query: 588 KNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSM-GYDERNIGKISGNISTCPK 646
+ DAE A+GSGH+NP +A++PGLVYE +DYI LCS+ GY E + +ISG +TCP+
Sbjct: 538 TSSDAELAYGSGHLNPSKAIDPGLVYEASNEDYIKFLCSVSGYTEDMVRRISGENTTCPE 597
Query: 647 GSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVP 706
G++KA P+DLNYPSM A ++ +SFTI+F RTVTNVGL NSTYKAK+ SK+ IKVVP
Sbjct: 598 GANKALPRDLNYPSMTAAIAANESFTISFYRTVTNVGLPNSTYKAKVFTGSKL-KIKVVP 656
Query: 707 ESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNH 746
E LSFK++NEKKSF+V+V G+ L + + S SL+WSDG+H
Sbjct: 657 EVLSFKAINEKKSFNVSVDGRYLVSKEMTSASLVWSDGSH 696
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478633|ref|XP_002280951.2| PREDICTED: cucumisin [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/752 (57%), Positives = 535/752 (71%), Gaps = 32/752 (4%)
Query: 9 FNFLSF----ILFLPMSILGGAITSQDDRKASMDICFSALVVLNFLMVHIVYLGSLFRGE 64
FNF+ +L S GGA Q+ + +IVY+G+L + +
Sbjct: 4 FNFVGVFSICLLVFATSFKGGAANDQERK------------------TYIVYMGALPQQQ 45
Query: 65 YETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSR 124
+ SQH SIL++ +G SS E+ LVRSY RSFNGFAAKLT+ ER+KLAS E VVSVFPS
Sbjct: 46 FSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEEVVSVFPSG 105
Query: 125 TLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGA 184
LQLHTTRSWDFMG Q++ R S+ESDII+GV+D+GIWPES+SFSDEG GP PKKWKG+
Sbjct: 106 ILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGPVPKKWKGS 165
Query: 185 CKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGT 244
CKGG+NFTCN KIIGAR Y + NTARD +GHGTHTASTA+G+ VK ASF+GVG+G
Sbjct: 166 CKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGASFYGVGKGD 225
Query: 245 ARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIA 304
ARGGVPSARIA YKVC E GC ++ AFDDAI+DGVDIIT+SLG L D I
Sbjct: 226 ARGGVPSARIAVYKVCY-ETGCTVADVMAAFDDAISDGVDIITVSLGAAAALPLDSDSIG 284
Query: 305 IGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVG 364
IG+FHAMAKG+LTL+SAGN+GP S SVAPW++SVAAS TDR + +VVLG+G T+ G
Sbjct: 285 IGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVLGNGVTVEG 344
Query: 365 YSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDG-F 423
+INSF G P+V G S C+ + ++C C++ L+KGKIV+C++ +
Sbjct: 345 IAINSFELNGTNHPIVYGKTAST-CDKQ-NAEICR--PSCLNEDLSKGKIVLCKNNPQIY 400
Query: 424 NEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEA 483
E + GA G+++L KV +V +P L +F + +Y+ STKKP+ANIL +E+
Sbjct: 401 VEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPKANILKSES 460
Query: 484 VKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNV 543
+ D+ APVVA FSSRGPN IVPD LKPDI+APGVDILAAFSP+ +SD ED R+ +N
Sbjct: 461 LNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDTDEDDRRVNYNF 520
Query: 544 VSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINP 603
+SGTSMSCPHAA VAAYVKSFHP WSPSAIKSAIMTTA ++ S N D E A+GSGHI+P
Sbjct: 521 LSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELAYGSGHIDP 580
Query: 604 VEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNIST-CPKGSDKATPKDLNYPSMA 662
V+A +PGLVY+ ++DYI M+C+MGYD + ISG+ ST CPK K +P+DLNYPSMA
Sbjct: 581 VKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPK-DGKGSPRDLNYPSMA 639
Query: 663 AQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSV 722
A+V P K F + FPRTVTNVG ANSTYKAKI S+ + ++V P +LSFKSLNE KSF V
Sbjct: 640 AKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSLNETKSFLV 699
Query: 723 TVTGKGL--PNGAIVSTSLMWSDGNHRVRSPI 752
TVTG GL S SL WSDGNH VRSPI
Sbjct: 700 TVTGDGLNFEKDPTASASLAWSDGNHHVRSPI 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746066|emb|CBI16122.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/700 (60%), Positives = 518/700 (74%), Gaps = 10/700 (1%)
Query: 57 LGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEG 116
+G+L + ++ SQH SIL++ +G SS E+ LVRSY RSFNGFAAKLT+ ER+KLAS E
Sbjct: 1 MGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEE 60
Query: 117 VVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGP 176
VVSVFPS LQLHTTRSWDFMG Q++ R S+ESDII+GV+D+GIWPES+SFSDEG GP
Sbjct: 61 VVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGP 120
Query: 177 APKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDAS 236
PKKWKG+CKGG+NFTCN KIIGAR Y + NTARD +GHGTHTASTA+G+ VK AS
Sbjct: 121 VPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGAS 180
Query: 237 FFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296
F+GVG+G ARGGVPSARIA YKVC E GC ++ AFDDAI+DGVDIIT+SLG L
Sbjct: 181 FYGVGKGDARGGVPSARIAVYKVCY-ETGCTVADVMAAFDDAISDGVDIITVSLGAAAAL 239
Query: 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVL 356
D I IG+FHAMAKG+LTL+SAGN+GP S SVAPW++SVAAS TDR + +VVL
Sbjct: 240 PLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVL 299
Query: 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVI 416
G+G T+ G +INSF G P+V G S C+ + ++C C++ L+KGKIV+
Sbjct: 300 GNGVTVEGIAINSFELNGTNHPIVYGKTAST-CDKQ-NAEICR--PSCLNEDLSKGKIVL 355
Query: 417 CQSFDG-FNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPE 475
C++ + E + GA G+++L KV +V +P L +F + +Y+ STKKP+
Sbjct: 356 CKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPK 415
Query: 476 ANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535
ANIL +E++ D+ APVVA FSSRGPN IVPD LKPDI+APGVDILAAFSP+ +SD ED
Sbjct: 416 ANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDTDED 475
Query: 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFA 595
R+ +N +SGTSMSCPHAA VAAYVKSFHP WSPSAIKSAIMTTA ++ S N D E A
Sbjct: 476 DRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELA 535
Query: 596 FGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNIST-CPKGSDKATPK 654
+GSGHI+PV+A +PGLVY+ ++DYI M+C+MGYD + ISG+ ST CPK K +P+
Sbjct: 536 YGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPK-DGKGSPR 594
Query: 655 DLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSL 714
DLNYPSMAA+V P K F + FPRTVTNVG ANSTYKAKI S+ + ++V P +LSFKSL
Sbjct: 595 DLNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSL 654
Query: 715 NEKKSFSVTVTGKGL--PNGAIVSTSLMWSDGNHRVRSPI 752
NE KSF VTVTG GL S SL WSDGNH VRSPI
Sbjct: 655 NETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPI 694
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083990|emb|CBI24378.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/707 (57%), Positives = 514/707 (72%), Gaps = 11/707 (1%)
Query: 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHER 108
+V+IVYLGSL GE+ SQH SIL V+ SS ++ LVRSYKRSFNGFAA LTD +
Sbjct: 35 IFVVYIVYLGSLREGEFSPLSQHLSILDTVLDGSSSKDSLVRSYKRSFNGFAAHLTDKQI 94
Query: 109 QKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESES 168
+K+ASMEGVVS+FP+R LQLHTTRSWDFMG ++++ R +VESD I+GVIDSGIWPE +S
Sbjct: 95 EKVASMEGVVSIFPNRLLQLHTTRSWDFMGFSETVKRNPTVESDTIIGVIDSGIWPELQS 154
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSDEGF PKKWKG C+GG+NFTCN K+IGAR Y + D + ++ARD GHGTHTASTA+
Sbjct: 155 FSDEGFSSIPKKWKGVCQGGKNFTCNKKVIGARAYNSIDKNDDSARDTVGHGTHTASTAA 214
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN V+DASFFGV G ARGGVPSARIA YKVC+ + GC IL FDDAI+DGVDIIT+
Sbjct: 215 GNIVEDASFFGVASGNARGGVPSARIAVYKVCTAD-GCTIADILAGFDDAISDGVDIITV 273
Query: 289 SLGG-QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
SLG +D IAIGSFHAM KG+LTL+SAGN+GP GS +S+APW++SVAAS TD
Sbjct: 274 SLGSVAGAFFLDKDPIAIGSFHAMVKGILTLNSAGNNGPSPGSVLSIAPWMVSVAASTTD 333
Query: 348 RLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQ-GCID 406
R + KVVLG G+ + G+SINSF G FPLVDG SD D + C+
Sbjct: 334 REIITKVVLGDGKIINGHSINSFVLNGTKFPLVDGKKAGLTNNSDCVTYPTLDCEIDCLV 393
Query: 407 SRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYS 466
G I++C+ G + K GA G + + S+ LPA L E F + +
Sbjct: 394 ESKTTGNILLCRG-PGLDVPLKFGAVGI-----IRPDLGRSIYPLPASDLEEQEFAMVEA 447
Query: 467 YLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPL 526
Y+ STKKPEA+IL ++++K+ AP++A FS RGP+ ++ +I+KPDISAPGVDILAAFSP+
Sbjct: 448 YINSTKKPEADILRSDSIKNVSAPMLASFSGRGPSSLLAEIIKPDISAPGVDILAAFSPV 507
Query: 527 GAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNS 586
+++ +DKR+AK++++SGTSMSCPHAAG AAYVK+FHPDWSPSAI+SA+MTTAWPMN+
Sbjct: 508 APITESLDDKRRAKYSIISGTSMSCPHAAGAAAYVKTFHPDWSPSAIRSALMTTAWPMNA 567
Query: 587 SKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISG-NISTCP 645
+ N AEF +GSGHINPV+A+NPGLVYE F+ DYI M+C +G+D + ISG N +TC
Sbjct: 568 TANPAAEFGYGSGHINPVKAINPGLVYEAFKDDYIKMMCGLGFDAEKVRLISGDNTTTCT 627
Query: 646 KGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVV 705
G + +DLNYPSMA+ K F I FPRTVTNVG ANSTY+AKI + ++ ++V
Sbjct: 628 TGVTQGAVRDLNYPSMASTADQHKPFNIRFPRTVTNVGQANSTYQAKITAD-PLMKVQVN 686
Query: 706 PESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPI 752
P LSF SLNEKK+F VTV+G+ L VS SL+W+DG H VRSPI
Sbjct: 687 PNVLSFTSLNEKKTFVVTVSGEALDKQPNVSASLVWTDGTHSVRSPI 733
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479070|ref|XP_002271624.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/704 (57%), Positives = 513/704 (72%), Gaps = 11/704 (1%)
Query: 52 VHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL 111
V+IVYLGSL GE+ SQH SIL V+ SS ++ LVRSYKRSFNGFAA LTD + +K+
Sbjct: 41 VYIVYLGSLREGEFSPLSQHLSILDTVLDGSSSKDSLVRSYKRSFNGFAAHLTDKQIEKV 100
Query: 112 ASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSD 171
ASMEGVVS+FP+R LQLHTTRSWDFMG ++++ R +VESD I+GVIDSGIWPE +SFSD
Sbjct: 101 ASMEGVVSIFPNRLLQLHTTRSWDFMGFSETVKRNPTVESDTIIGVIDSGIWPELQSFSD 160
Query: 172 EGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231
EGF PKKWKG C+GG+NFTCN K+IGAR Y + D + ++ARD GHGTHTASTA+GN
Sbjct: 161 EGFSSIPKKWKGVCQGGKNFTCNKKVIGARAYNSIDKNDDSARDTVGHGTHTASTAAGNI 220
Query: 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLG 291
V+DASFFGV G ARGGVPSARIA YKVC+ + GC IL FDDAI+DGVDIIT+SLG
Sbjct: 221 VEDASFFGVASGNARGGVPSARIAVYKVCTAD-GCTIADILAGFDDAISDGVDIITVSLG 279
Query: 292 G-QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLF 350
+D IAIGSFHAM KG+LTL+SAGN+GP GS +S+APW++SVAAS TDR
Sbjct: 280 SVAGAFFLDKDPIAIGSFHAMVKGILTLNSAGNNGPSPGSVLSIAPWMVSVAASTTDREI 339
Query: 351 VDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQ-GCIDSRL 409
+ KVVLG G+ + G+SINSF G FPLVDG SD D + C+
Sbjct: 340 ITKVVLGDGKIINGHSINSFVLNGTKFPLVDGKKAGLTNNSDCVTYPTLDCEIDCLVESK 399
Query: 410 AKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469
G I++C+ G + K GA G + + S+ LPA L E F + +Y+
Sbjct: 400 TTGNILLCRG-PGLDVPLKFGAVGI-----IRPDLGRSIYPLPASDLEEQEFAMVEAYIN 453
Query: 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAV 529
STKKPEA+IL ++++K+ AP++A FS RGP+ ++ +I+KPDISAPGVDILAAFSP+ +
Sbjct: 454 STKKPEADILRSDSIKNVSAPMLASFSGRGPSSLLAEIIKPDISAPGVDILAAFSPVAPI 513
Query: 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN 589
++ +DKR+AK++++SGTSMSCPHAAG AAYVK+FHPDWSPSAI+SA+MTTAWPMN++ N
Sbjct: 514 TESLDDKRRAKYSIISGTSMSCPHAAGAAAYVKTFHPDWSPSAIRSALMTTAWPMNATAN 573
Query: 590 KDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISG-NISTCPKGS 648
AEF +GSGHINPV+A+NPGLVYE F+ DYI M+C +G+D + ISG N +TC G
Sbjct: 574 PAAEFGYGSGHINPVKAINPGLVYEAFKDDYIKMMCGLGFDAEKVRLISGDNTTTCTTGV 633
Query: 649 DKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPES 708
+ +DLNYPSMA+ K F I FPRTVTNVG ANSTY+AKI + ++ ++V P
Sbjct: 634 TQGAVRDLNYPSMASTADQHKPFNIRFPRTVTNVGQANSTYQAKITAD-PLMKVQVNPNV 692
Query: 709 LSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPI 752
LSF SLNEKK+F VTV+G+ L VS SL+W+DG H VRSPI
Sbjct: 693 LSFTSLNEKKTFVVTVSGEALDKQPNVSASLVWTDGTHSVRSPI 736
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 753 | ||||||
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.922 | 0.937 | 0.566 | 6.5e-209 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.921 | 0.948 | 0.566 | 1.2e-207 | |
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.933 | 0.952 | 0.560 | 1.1e-206 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.934 | 0.956 | 0.551 | 4.7e-206 | |
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.909 | 0.988 | 0.556 | 3.8e-204 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.907 | 0.927 | 0.560 | 1.9e-202 | |
| TAIR|locus:2154528 | 713 | AT5G58840 "AT5G58840" [Arabido | 0.431 | 0.455 | 0.641 | 4.4e-202 | |
| TAIR|locus:2154503 | 703 | AT5G58820 "AT5G58820" [Arabido | 0.431 | 0.462 | 0.655 | 2.5e-199 | |
| TAIR|locus:2154513 | 701 | AT5G58830 "AT5G58830" [Arabido | 0.419 | 0.450 | 0.610 | 2.3e-196 | |
| TAIR|locus:2168444 | 732 | AT5G59130 "AT5G59130" [Arabido | 0.899 | 0.924 | 0.552 | 4.4e-194 |
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2020 (716.1 bits), Expect = 6.5e-209, P = 6.5e-209
Identities = 402/710 (56%), Positives = 514/710 (72%)
Query: 52 VHIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V+IVYLGSL R EY S H SILQE+ G+S +EN LVRSYK+SFNGFAA+LT+ ER++
Sbjct: 34 VYIVYLGSLPSREEYTPMSDHMSILQEITGESLIENRLVRSYKKSFNGFAARLTESERKR 93
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKR--SVESDIIVGVIDSGIWPESES 168
LA ME VVSVFPSR L+L TT SW+FMGL + I KR S+ESD I+GVIDSGI+PES+S
Sbjct: 94 LAGMERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESDS 153
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GFGP PKKWKG C GG+NFTCNNK+IGAR YT + TARD GHGTHTAS A+
Sbjct: 154 FSDQGFGPPPKKWKGTCAGGKNFTCNNKVIGARDYTAKSKANQTARDYSGHGTHTASIAA 213
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN V +++F+G+G GTARGGVP+ARIA YKVC E GC A++ AFDDAIADGVD+I+I
Sbjct: 214 GNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNE-GCDGEAMMSAFDDAIADGVDVISI 272
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
S+ N F +D IAIG+FHAMA GVLT+++AGN+GP I + S APW+ SVAAS T+R
Sbjct: 273 SIVLDNIPPFEEDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASVTNR 332
Query: 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS-RPCESDFDPQLCTDGQGCIDS 407
F+ KVVLG G+ L+G S+N++ G +PLV G + C D +LC C+D
Sbjct: 333 AFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSVD-KARLCEPK--CLDG 389
Query: 408 RLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSY 467
+L KGKIV+C S G E K GA GS+ N E ++ P L+ D++ S+ SY
Sbjct: 390 KLVKGKIVLCDSTKGLIEAQKLGAVGSIVKNP-EPDRAFIRS-FPVSFLSNDDYKSLVSY 447
Query: 468 LKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLG 527
+ STK P+A +L +E + + AP+VA FSSRGP+ IV DILKPDI+APGV+ILAA+SP
Sbjct: 448 MNSTKNPKATVLKSEEISNQRAPLVASFSSRGPSSIVSDILKPDITAPGVEILAAYSPDS 507
Query: 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587
+ ++ D R+ K++V+SGTSM+CPH AGVAAYVK+FHP WSPS I+SAIMTTAWPMN+S
Sbjct: 508 SPTESEFDTRRVKYSVLSGTSMACPHVAGVAAYVKTFHPQWSPSMIQSAIMTTAWPMNAS 567
Query: 588 KNK--DAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCP 645
+ EFA+GSGH++P++A+NPGLVYE + D+I LC + Y ++ ISG+ STC
Sbjct: 568 GSGFVSTEFAYGSGHVDPIDAINPGLVYELTKADHINFLCGLNYTSDHLRIISGDNSTCT 627
Query: 646 KGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQ--NSKIVSIK 703
K K P++LNYP+M+A+VS K F I F RTVTNVG+ STY AK+++ SK+ SIK
Sbjct: 628 KEISKTLPRNLNYPTMSAKVSGTKPFNITFQRTVTNVGMQKSTYNAKVVKFPGSKL-SIK 686
Query: 704 VVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
V P LS KS+NEK+SF VTV+ + VS +L+WSDG H VRSPI+
Sbjct: 687 VSPRVLSMKSMNEKQSFMVTVSSDSIGTKQPVSANLIWSDGTHNVRSPII 736
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
Identities = 410/724 (56%), Positives = 519/724 (71%)
Query: 42 SALVVLNFLMVHIVYLGSLF-RGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFA 100
S V + V+IVY+GSL R +Y +S H +ILQEV G+SS+E LVRSYKRSFNGFA
Sbjct: 21 SVSAVTDDKQVYIVYMGSLSSRADYTPTSDHMNILQEVTGESSIEGRLVRSYKRSFNGFA 80
Query: 101 AKLTDHERQKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS--VESDIIVGVI 158
A+LT+ ER+++A M GVVSVFP++ LQL TT SWDFMGL + I KR+ VESD I+GVI
Sbjct: 81 ARLTESERERVAKMVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVI 140
Query: 159 DSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQG 218
DSGI PES+SFSD+GFGP P+KWKG C GG+NFTCNNK+IGAR YT++ RD+ G
Sbjct: 141 DSGITPESQSFSDKGFGPPPQKWKGVCSGGKNFTCNNKLIGARDYTSEG-----TRDMDG 195
Query: 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDA 278
HGTHTASTA+GN V DASFFG+G GT RGGVP++R+AAYKVC+P GC+ A+L AFDDA
Sbjct: 196 HGTHTASTAAGNAVVDASFFGIGNGTVRGGVPASRVAAYKVCTPT-GCSSEALLSAFDDA 254
Query: 279 IADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWL 338
IADGVD+ITIS+G + F D IAIG+FHAMAKGVLT++SAGNSGP S VAPW+
Sbjct: 255 IADGVDLITISIGDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWI 314
Query: 339 MSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDV-SRPCESDFDPQL 397
++VAAS T+R FV KVVLG+G+TLVG S+N++ KGK +PLV G S C+++ L
Sbjct: 315 LTVAASTTNRGFVTKVVLGNGKTLVGKSVNAYEMKGKDYPLVYGKSAASSACDAE-SAGL 373
Query: 398 CTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLN---DVEFNKXXXXXXLPAV 454
C C+D KGKI++C G V GA G + DV F LPA
Sbjct: 374 CE--LSCVDKSRVKGKILVCGGPGGLKIVESVGAVGLIYRTPKPDVAF-----IHPLPAA 426
Query: 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA 514
L ++F S+ SYL+ST P+A +L TEA+ + +PV+A FSSRGPN I DILKPDI+A
Sbjct: 427 GLLTEDFESLVSYLESTDSPQAIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPDITA 486
Query: 515 PGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIK 574
PGV+ILAA+SP G S D D R K++V+SGTSMSCPH AGVAAYVK+F+P WSPS I+
Sbjct: 487 PGVEILAAYSPAGEPSQD--DTRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPSMIQ 544
Query: 575 SAIMTTAWPMNSSKNKDA--EFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDER 632
SAIMTTAWP+N++ A EFA+GSGH++P+ A NPGLVYE + D+I LC M Y +
Sbjct: 545 SAIMTTAWPVNATGTGIASTEFAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMNYTSQ 604
Query: 633 NIGKISGNISTCPKGSDKATPKDLNYPSMAAQVS-PGKSFTINFPRTVTNVGLANSTYKA 691
+ ISG TC + K P++LNYPSM+A++S G +FT+ F RT+TNVG NSTY +
Sbjct: 605 VLKVISGETVTCSEAK-KILPRNLNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNSTYTS 663
Query: 692 KIL--QNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVR 749
K++ SK+ +K+ P LSFK++NEK+SF+VTVTG L + S +L+WSDG H VR
Sbjct: 664 KVVAGHGSKL-DVKITPSVLSFKTVNEKQSFTVTVTGSNLDSEVPSSANLIWSDGTHNVR 722
Query: 750 SPIV 753
SPIV
Sbjct: 723 SPIV 726
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| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1999 (708.7 bits), Expect = 1.1e-206, P = 1.1e-206
Identities = 410/732 (56%), Positives = 521/732 (71%)
Query: 40 CFSALVVLNFLMV---------HIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLV 89
C AL+V++F +IVY+G+L R +Y S H SILQ+V G+SS+E+ LV
Sbjct: 13 CIFALLVVSFASADKDDQDKQEYIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDRLV 72
Query: 90 RSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS- 148
R+YKRSFNGFAA+LT ER+ LASM+ VVSVFP++ L+L TT SW+FMGL +S KR+
Sbjct: 73 RNYKRSFNGFAARLTKSEREILASMDEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNT 132
Query: 149 -VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD 207
+ESD I+GVIDSGI+PES+SFS +GFGP PKKWKG CKGG+NFT NNK+IGARYYT
Sbjct: 133 IIESDTIIGVIDSGIYPESDSFSGKGFGPPPKKWKGVCKGGKNFTWNNKLIGARYYTPK- 191
Query: 208 ISG--NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL- 264
+ G +ARD GHG+HTASTA+GN VK SF+G+G GTARGGVP+ARIA YKVC P +
Sbjct: 192 LEGFPESARDYMGHGSHTASTAAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVD 251
Query: 265 GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
GC IL AFDDAIAD VDIITIS+GG N+ F +D IAIG+FHAMAKG+L ++SAGNS
Sbjct: 252 GCTTDGILAAFDDAIADKVDIITISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSAGNS 311
Query: 325 GPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMD 384
GP + S+APW+ +VAASNT+R FV KVVLG+G+T VG S+NSF GK +PLV G
Sbjct: 312 GPEPSTVASIAPWMFTVAASNTNRAFVTKVVLGNGKT-VGRSVNSFDLNGKKYPLVYGKS 370
Query: 385 VSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNK 444
S C + C+ G C+DS+ KGKIV+C S +E GA S+ +
Sbjct: 371 ASSSCGAA-SAGFCSPG--CLDSKRVKGKIVLCDSPQNPDEAQAMGAIASIVRS--HRTD 425
Query: 445 XXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIV 504
P L ED++N++ SY+ STK P+A +L +E + + APVVA + SRGPN I+
Sbjct: 426 VASIFSFPVSVLLEDDYNTVLSYMNSTKNPKAAVLKSETIFNQRAPVVASYFSRGPNTII 485
Query: 505 PDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF 564
PDILKPDI+APG +I+AA+SP S D R+ K++V +GTSMSCPH AGVAAY+KSF
Sbjct: 486 PDILKPDITAPGSEIVAAYSPDAPPSIS--DTRRVKYSVDTGTSMSCPHVAGVAAYLKSF 543
Query: 565 HPDWSPSAIKSAIMTTAWPMNSSK---NKDAEFAFGSGHINPVEAVNPGLVYETFEQDYI 621
HP WSPS I+SAIMTTAWPMN+S N+ AEFA+G+GH++P+ A++PGLVYE + D+I
Sbjct: 544 HPRWSPSMIQSAIMTTAWPMNASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANKSDHI 603
Query: 622 IMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTN 681
LC + Y +N+ ISG+ S+C K K+ P++LNYPSM AQVS K F + F RTVTN
Sbjct: 604 AFLCGLNYTAKNLRLISGDSSSCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRRTVTN 663
Query: 682 VGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMW 741
VG N+TYKAK++ SK+ +KVVP LS KSL EKKSF+VT +G G +VS L+W
Sbjct: 664 VGRPNATYKAKVV-GSKL-KVKVVPAVLSLKSLYEKKSFTVTASGAGPKAENLVSAQLIW 721
Query: 742 SDGNHRVRSPIV 753
SDG H VRSPIV
Sbjct: 722 SDGVHFVRSPIV 733
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 404/732 (55%), Positives = 516/732 (70%)
Query: 40 CFSALVVLNFL---------MVHIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLV 89
C AL+V++F V+IVY+G+L R +Y S H SILQ+V G+SS+++ LV
Sbjct: 12 CIFALLVVSFASAGKDDQDKQVYIVYMGALPSRVDYMPMSHHTSILQDVTGESSIQDRLV 71
Query: 90 RSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS- 148
R+YKRSFNGFAA+LT+ ER+ LASM+ VVSVFPS+ L L TT SW+FMGL + KR+
Sbjct: 72 RNYKRSFNGFAARLTESEREILASMDEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNP 131
Query: 149 -VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD 207
+ESD I+GVIDSGI+PES+SFS +GFGP PKKWKG CKGG NFTCNNK+IGARYYT
Sbjct: 132 LIESDTIIGVIDSGIYPESDSFSGKGFGPPPKKWKGVCKGGTNFTCNNKLIGARYYTPK- 190
Query: 208 ISG--NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPE-L 264
+ G +ARD GHG+HTAS A+GN VK SF+G+G GT RGGVP+ARIA YKVC P +
Sbjct: 191 LEGFPESARDNTGHGSHTASIAAGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVCDPGVI 250
Query: 265 GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
C IL AFDDAIAD VDIIT+SLG F +D +AIG+FHAMAKG+LT++ AGN+
Sbjct: 251 RCTSDGILAAFDDAIADKVDIITVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNN 310
Query: 325 GPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMD 384
GP + VS+APWL +VAASN +R F+ KVVLG+G+T+VG S+NSF GK +PLV G
Sbjct: 311 GPERRTIVSMAPWLFTVAASNMNRAFITKVVLGNGKTIVGRSVNSFDLNGKKYPLVYGKS 370
Query: 385 VSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNK 444
S C++ C+ G C+DS+ KGKIV+C + E GA S+ N E
Sbjct: 371 ASSRCDAS-SAGFCSPG--CLDSKRVKGKIVLCDTQRNPGEAQAMGAVASIVRNPYE--D 425
Query: 445 XXXXXXLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIV 504
P L+ED++N + SY+ STK P+A +L +E + + +APVVA +SSRGPN ++
Sbjct: 426 AASVFSFPVSVLSEDDYNIVLSYVNSTKNPKAAVLKSETIFNQKAPVVASYSSRGPNPLI 485
Query: 505 PDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF 564
DILKPDI+APG +ILAA+SP V D R K+ V+SGTSMSCPH AGVAAY+K+F
Sbjct: 486 HDILKPDITAPGSEILAAYSPY--VPPSESDTRHVKYTVISGTSMSCPHVAGVAAYIKTF 543
Query: 565 HPDWSPSAIKSAIMTTAWPMNSS---KNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYI 621
HP WSPS I+SAIMTTAWPMN+S N+ AEFA+G+GH++P+ A++PGLVYE + D+I
Sbjct: 544 HPLWSPSMIQSAIMTTAWPMNASTSPSNELAEFAYGAGHVDPIAAIHPGLVYEANKSDHI 603
Query: 622 IMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTN 681
LC Y + + ISG+ S+C K K+ ++LNYPSM+AQVS K F + F RTVTN
Sbjct: 604 TFLCGFNYTGKKLRLISGDSSSCTKEQTKSLTRNLNYPSMSAQVSGTKPFKVTFRRTVTN 663
Query: 682 VGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMW 741
VG N+TYKAK++ SK+ +KVVP LS KSL EKKSF+VTV+G G +VS L+W
Sbjct: 664 VGRPNATYKAKVV-GSKL-KVKVVPAVLSLKSLYEKKSFTVTVSGAGPKAENLVSAQLIW 721
Query: 742 SDGNHRVRSPIV 753
SDG H VRSPIV
Sbjct: 722 SDGVHFVRSPIV 733
|
|
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
Identities = 389/699 (55%), Positives = 498/699 (71%)
Query: 57 LGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEG 116
+G+L +Y S H SILQ+++G + ++LVRSYKRSFNGFAA L+ E QKL +M+
Sbjct: 1 MGTLPEIKYSPPSHHLSILQKLVGTIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMKE 60
Query: 117 VVSVFPSRTLQLHTTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGP 176
VVSVFPS++ +L TTRSWDF+G + R+ ESD+IVGVIDSGIWPESESF DEGFGP
Sbjct: 61 VVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFGP 120
Query: 177 APKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDAS 236
PKKWKG+CKGG F CNNK+IGAR+Y ++ARD +GHGTHTASTA+GN V+ AS
Sbjct: 121 PPKKWKGSCKGGLKFACNNKLIGARFYNK---FADSARDEEGHGTHTASTAAGNAVQAAS 177
Query: 237 FFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296
F+G+ QGTARGGVPSARIAAYKVC C + IL AFDDAIADGVD+I+IS+
Sbjct: 178 FYGLAQGTARGGVPSARIAAYKVCFNR--CNDVDILAAFDDAIADGVDVISISISADYVS 235
Query: 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVL 356
N +AIGSFHAM +G++T SAGN+GP GS +V+PW+++VAAS TDR F+D+VVL
Sbjct: 236 NLLNASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVL 295
Query: 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVI 416
G+G+ L G S+N+F+ G FP+V G +VSR C S C+ G C+DS L KGKIV+
Sbjct: 296 GNGKALTGISVNTFNLNGTKFPIVYGQNVSRNC-SQAQAGYCSSG--CVDSELVKGKIVL 352
Query: 417 CQSFDGFNEVHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYLKSTKKPEA 476
C F G+ E + AGA G + N + PA +L +++ SI SY++S + P+A
Sbjct: 353 CDDFLGYREAYLAGAIGVIVQNTL-LPDSAFVVPFPASSLGFEDYKSIKSYIESAEPPQA 411
Query: 477 NILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSD--DPE 534
IL TE + D EAP V FSSRGP+ ++ ++LKPD+SAPG++ILAAFSP+ + S +PE
Sbjct: 412 EILRTEEIVDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPSSFLNPE 471
Query: 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEF 594
DKR +++V+SGTSM+CPH AGVAAYVKSFHPDWSPSAIKSAIMTTA PMN KN + EF
Sbjct: 472 DKRSVRYSVMSGTSMACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNLKKNPEQEF 531
Query: 595 AFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPK 654
A+GSG INP +A +PGLVYE +DY+ MLC+ G+D + SG TC S++ K
Sbjct: 532 AYGSGQINPTKASDPGLVYEVETEDYLKMLCAEGFDSTTLTTTSGQNVTC---SERTEVK 588
Query: 655 DLNYPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSL 714
DLNYP+M VS F + F RTVTNVG NSTYKA ++ + I + PE L F L
Sbjct: 589 DLNYPTMTTFVSSLDPFNVTFKRTVTNVGFPNSTYKASVVPLQPELQISIEPEILRFGFL 648
Query: 715 NEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
EKKSF VT++GK L +G+ VS+S++WSDG+H VRSPIV
Sbjct: 649 EEKKSFVVTISGKELKDGSFVSSSVVWSDGSHSVRSPIV 687
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1959 (694.7 bits), Expect = 1.9e-202, P = 1.9e-202
Identities = 401/715 (56%), Positives = 512/715 (71%)
Query: 52 VHIVYLGSLF-RGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V+IVY+GSL R +Y +S H SILQ+V G+SS+E LVRSYKRSFNGFAA+LT+ ER
Sbjct: 32 VYIVYMGSLSSRADYIPTSDHMSILQQVTGESSIEGRLVRSYKRSFNGFAARLTESERTL 91
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS--VESDIIVGVIDSGIWPESES 168
+A +EGVVSVFP++ LQLHTT SWDFMG+ + KR+ +ESD I+GVID+GIWPES+S
Sbjct: 92 IAEIEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESKS 151
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GFGP PKKWKG C GG+NFTCNNK+IGAR YT++ RD GHGTHTASTA+
Sbjct: 152 FSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYTSEG-----TRDTSGHGTHTASTAA 206
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN VKD SFFG+G GT RGGVP++RIAAYKVC+ + GC+ A+L +FDDAIADGVD+ITI
Sbjct: 207 GNAVKDTSFFGIGNGTVRGGVPASRIAAYKVCT-DSGCSSEALLSSFDDAIADGVDLITI 265
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS-VAPWLMSVAASNTD 347
S+G Q F D IAIG+FHAMAKG+LT+ SAGNSGP +TVS VAPW+ +VAAS T+
Sbjct: 266 SIGFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPK-PTTVSHVAPWIFTVAASTTN 324
Query: 348 RLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDV-SRPCESDFDPQLCTDGQGCID 406
R F+ KVVLG+G+TL G S+N+F KGK +PLV G S C++ LC C++
Sbjct: 325 RGFITKVVLGNGKTLAGRSVNAFDMKGKKYPLVYGKSAASSACDAK-TAALCAPA--CLN 381
Query: 407 SRLAKGKIVICQSFDGFNEVHKAGAEGSVSLN---DVEFNKXXXXXXLPAVALNEDNFNS 463
KGKI++C G+ GA + + DV F LPA L +F S
Sbjct: 382 KSRVKGKILVCGGPSGYKIAKSVGAIAIIDKSPRPDVAFTHH-----LPASGLKAKDFKS 436
Query: 464 IYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523
+ SY++S P+A +L TE + + +PV+A FSSRGPN I DILKPDI+APGV+ILAAF
Sbjct: 437 LVSYIESQDSPQAAVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAF 496
Query: 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP 583
SP G S+D D R+ K++V SGTSM+CPH AGVAAYVK+F+P WSPS I+SAIMTTAWP
Sbjct: 497 SPNGEPSED--DTRRVKYSVFSGTSMACPHVAGVAAYVKTFYPRWSPSMIQSAIMTTAWP 554
Query: 584 MNSSKNKDA--EFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNI 641
+ + A EFA+G+GH++P+ A+NPGLVYE + D+I LC M Y + + ISG+
Sbjct: 555 VKAKGRGIASTEFAYGAGHVDPMAALNPGLVYELDKADHIAFLCGMNYTSKTLKIISGDT 614
Query: 642 STCPKGSDKATPKDLNYPSMAAQVSPGKS-FTINFPRTVTNVGLANSTYKAKIL--QNSK 698
C K +K P++LNYPSM+A++S S F++ F RT+TNVG NSTYK+K++ SK
Sbjct: 615 VKCSK-KNKILPRNLNYPSMSAKLSGTDSTFSVTFNRTLTNVGTPNSTYKSKVVAGHGSK 673
Query: 699 IVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
+ SIKV P L FK++NEK+SFSVTVTG + + S +L+WSDG H VRSPIV
Sbjct: 674 L-SIKVTPSVLYFKTVNEKQSFSVTVTGSDVDSEVPSSANLIWSDGTHNVRSPIV 727
|
|
| TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 4.4e-202, Sum P(2) = 4.4e-202
Identities = 215/335 (64%), Positives = 260/335 (77%)
Query: 52 VHIVYLGSL--FRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQ 109
V++VY+GSL R EY S H SILQEV G+SSVE LVRSYKRSFNGFAA+LT+ ER+
Sbjct: 34 VYVVYMGSLPSSRLEYTPMSHHMSILQEVTGESSVEGRLVRSYKRSFNGFAARLTESERE 93
Query: 110 KLASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS--VESDIIVGVIDSGIWPESE 167
++A MEGVVSVFP +L TT SWDF+GL + KR+ +ESD I+G IDSGIWPESE
Sbjct: 94 RVAEMEGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESE 153
Query: 168 SFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTA 227
SFSD+GFGP PKKWKG C G+NFTCNNK+IGAR YT + RDI+GHGTHTASTA
Sbjct: 154 SFSDKGFGPPPKKWKGVCSAGKNFTCNNKLIGARDYTNEG-----TRDIEGHGTHTASTA 208
Query: 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIIT 287
+GN VK+ SF+G+G GTARGGVP++RIAAYK CS E+GC ++L AFDDAIADGVD+I+
Sbjct: 209 AGNAVKNTSFYGIGNGTARGGVPASRIAAYKACS-EMGCTTESVLSAFDDAIADGVDLIS 267
Query: 288 ISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
ISLG + D IAIG+FHAM KG+LT+ SAGN GP GS +SVAPW+++VAASNT+
Sbjct: 268 ISLGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTN 327
Query: 348 RLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382
R FV KVVLG+G+T VG S+N+F KGK +PL G
Sbjct: 328 RGFVTKVVLGNGKTFVGKSLNAFDLKGKNYPLYGG 362
|
|
| TAIR|locus:2154503 AT5G58820 "AT5G58820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 2.5e-199, Sum P(2) = 2.5e-199
Identities = 219/334 (65%), Positives = 262/334 (78%)
Query: 52 VHIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V++VY+GSL EY S H SILQEV GDSSVE LVRSYKRSFNGFAA+LT+ ER +
Sbjct: 29 VYVVYMGSLPSLLEYTPLSHHMSILQEVTGDSSVEGRLVRSYKRSFNGFAARLTESERIR 88
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS--VESDIIVGVIDSGIWPESES 168
+A MEGVVSVFP+ +L TT SWDF+GL + KR+ +ESD I+G IDSGIWPESES
Sbjct: 89 VAEMEGVVSVFPNINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESES 148
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GFGP PKKWKG C GG+NFTCNNK+IGAR YT++ RD+QGHGTHTASTA+
Sbjct: 149 FSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYTSEG-----TRDLQGHGTHTASTAA 203
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN V DASFFG+G GTARGGVP++RIAAYKVCS E C ++L AFDDAIADGVD+I+I
Sbjct: 204 GNAVADASFFGIGNGTARGGVPASRIAAYKVCS-EKDCTAASLLSAFDDAIADGVDLISI 262
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
SL + + +D IAIG+FHA KG+LT++SAGNSG F +T SVAPW++SVAASNT+R
Sbjct: 263 SLASEFPQKYYKDAIAIGAFHANVKGILTVNSAGNSGSFPSTTASVAPWILSVAASNTNR 322
Query: 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382
F KVVLG+G+TLVG S+NSF KGK +PLV G
Sbjct: 323 GFFTKVVLGNGKTLVGRSVNSFDLKGKKYPLVYG 356
|
|
| TAIR|locus:2154513 AT5G58830 "AT5G58830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 2.3e-196, Sum P(2) = 2.3e-196
Identities = 204/334 (61%), Positives = 256/334 (76%)
Query: 52 VHIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V++VY+GSL + Y S H +ILQEV G+S YKRSFNGF+A LT+ ER+
Sbjct: 33 VYVVYMGSLPSQPNYTPMSNHINILQEVTGES---------YKRSFNGFSALLTESEREG 83
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKRS--VESDIIVGVIDSGIWPESES 168
+A MEGVVSVF S+ +L TT SWDFMG+ + KR+ VESD I+G IDSGIWPESES
Sbjct: 84 VAEMEGVVSVFRSKNYKLQTTASWDFMGMKEGKNTKRNFAVESDTIIGFIDSGIWPESES 143
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GFGP PKKWKG CKGG+NFTCNNK+IGAR YT++ RD+QGHGTHT STA+
Sbjct: 144 FSDKGFGPPPKKWKGVCKGGKNFTCNNKLIGARDYTSEG-----TRDLQGHGTHTTSTAA 198
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN V D SFFG+G GTARGGVP++R+AAYKVC+ GC++ +L AFDDAIADGVD+I++
Sbjct: 199 GNAVADTSFFGIGNGTARGGVPASRVAAYKVCTIT-GCSDDNVLSAFDDAIADGVDLISV 257
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
SLGG + +D IAIG+FHAMAKG+LT+HSAGN+GP + VSVAPW+++VAA+ T+R
Sbjct: 258 SLGGDYPSLYAEDTIAIGAFHAMAKGILTVHSAGNAGPNPTTVVSVAPWMLTVAATTTNR 317
Query: 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382
F+ KVVLG+G+TLVG S+N+F KGK +PL G
Sbjct: 318 RFLTKVVLGNGKTLVGKSVNAFDLKGKKYPLEYG 351
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| TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1880 (666.9 bits), Expect = 4.4e-194, P = 4.4e-194
Identities = 393/711 (55%), Positives = 499/711 (70%)
Query: 52 VHIVYLGSL-FRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQK 110
V+IVY+GSL R +Y S H +ILQEV +SS+E LVRSYKRSFNGF A+LT+ ER++
Sbjct: 35 VYIVYMGSLPSRADYTPMSHHMNILQEVARESSIEGRLVRSYKRSFNGFVARLTESERER 94
Query: 111 LASMEGVVSVFPSRTLQLHTTRSWDFMGLNQSITRKR--SVESDIIVGVIDSGIWPESES 168
+A VVSVFP++ L+L T+ SWDFMGL + KR SVESD I+GV D GIWPESES
Sbjct: 95 VA----VVSVFPNKKLKLQTSASWDFMGLKEGKGTKRNPSVESDTIIGVFDGGIWPESES 150
Query: 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTAS 228
FSD+GFGP PKKWKG C GG+NFTCNNK+IGAR+Y+ D ARD GHGTHTAS A+
Sbjct: 151 FSDKGFGPPPKKWKGICAGGKNFTCNNKLIGARHYSPGD-----ARDSTGHGTHTASIAA 205
Query: 229 GNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITI 288
GN V + SFFG+G GT RG VP++RIA Y+VC+ E C + AIL AFDDAI+DGVDIITI
Sbjct: 206 GNAVANTSFFGIGNGTVRGAVPASRIAVYRVCAGE--CRDDAILSAFDDAISDGVDIITI 263
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
S+G N F +D IAIG+FHAM+KG+LT+++AGN+GP S S+APWL++VAAS +R
Sbjct: 264 SIGDINVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTANR 323
Query: 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSR 408
FV KVVLG G+TLVG S+N F KGK FPLV G + + CT C+D+
Sbjct: 324 EFVSKVVLGDGKTLVGKSVNGFDLKGKKFPLVYGKSAALSLSQAKCAEDCTPE--CLDAS 381
Query: 409 LAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKXXXXXXLPAVALNEDNFNSIYSYL 468
L KGKI++C F + K A ++ + ++ + LP L +D+F S+ SY
Sbjct: 382 LVKGKILVCNRFLPYVAYTKR-AVAAIFEDGSDWAQING---LPVSGLQKDDFESVLSYF 437
Query: 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGA 528
KS K PEA +L +E++ AP + FSSRGPN IV DILKPDI+APG++ILAA S L A
Sbjct: 438 KSEKSPEAAVLKSESIFYQTAPKILSFSSRGPNIIVADILKPDITAPGLEILAANS-LRA 496
Query: 529 VSDDP-EDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587
P D K++V SGTSMSCPHAAGVAAYVK+FHP WSPS IKSAIMTTAW MN+S
Sbjct: 497 ---SPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAWSMNAS 553
Query: 588 KNKDA--EFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCP 645
++ A EFA+G+GH++P+ A NPGLVYE + DY LC M Y++ + ISG TC
Sbjct: 554 QSGYASTEFAYGAGHVDPIAATNPGLVYEITKTDYFAFLCGMNYNKTTVKLISGEAVTC- 612
Query: 646 KGSDKATPKDLNYPSMAAQVSPGK-SFTINFPRTVTNVGLANSTYKAKILQN--SKIVSI 702
S+K +P++LNYPSM+A++S SF + F RTVTNVG NSTYK+K++ N SK+ ++
Sbjct: 613 --SEKISPRNLNYPSMSAKLSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGSKL-NV 669
Query: 703 KVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
KV P LS KS+NEK+SF+VTV+ L + S +L+WSDG H VRSPIV
Sbjct: 670 KVSPSVLSMKSMNEKQSFTVTVSASELHSELPSSANLIWSDGTHNVRSPIV 720
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.IX.4016.1 | hypothetical protein (687 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 753 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-101 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-22 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 8e-17 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-15 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 7e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-14 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 8e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 6e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 8e-11 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-10 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-10 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 5e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-10 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 9e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-09 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 4e-08 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-07 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 6e-07 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 1e-06 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-06 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 5e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 7e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 8e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 8e-06 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-05 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 2e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 5e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 7e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 0.001 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.001 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.001 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.003 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-101
Identities = 114/236 (48%), Positives = 143/236 (60%), Gaps = 17/236 (7%)
Query: 126 LQLHTTRSWDFMGL----NQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKW 181
QLHTTRS DF+GL S+ + II+GV+D+GIWPE SF+D G GP P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 182 KGACKGGRNFT---CNNKIIGARYYTTDDISGN---------TARDIQGHGTHTASTASG 229
G C G +F CNNK+IGARY++ + + RD GHGTHTASTA+G
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITIS 289
N V +AS G GTA G P ARIA YKVC P+ GC + IL A D AIADGVD+I+ S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASN 345
+GG + + +D IAI HA+ G+ SAGNSGP + +VAPW+ +VAAS
Sbjct: 181 IGG-GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 51/75 (68%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Query: 508 LKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD 567
LKPDI+APGVDILAA++P GA DP D R F +SGTSM+ PH AGVAA +KS HPD
Sbjct: 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 568 WSPSAIKSAIMTTAW 582
WSP+AIKSA+MTTA+
Sbjct: 293 WSPAAIKSALMTTAY 307
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ V VID+GI GF KGG +F ++ +
Sbjct: 2 KGVKVAVIDTGIDYTHPDLGGPGFPND------KVKGGYDFVDDDYDPMDTRPYPSPLGD 55
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
+A D GHGTH A +GN V G +G A P A + AYKV P
Sbjct: 56 ASAGDATGHGTHVAGIIAGNGVN----VGTIKGVA----PKADLYAYKVLGPGGSGTTDV 107
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
I+ A + A+ DG+D+I +SLG D IAI + A+ GV+ + +AGNSGP
Sbjct: 108 IIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--AVKAGVVVVAAAGNSGP-APY 164
Query: 331 TV---SVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374
T+ + AP ++V AS + ++ SS+G
Sbjct: 165 TIGSPATAPSAITVGASTVADVAEAD------------TVGPSSSRG 199
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 484 VKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNV 543
+EA V SSRGP +KPDI APGVDI++ +
Sbjct: 184 ADVAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAP-----------GSGTGYAR 231
Query: 544 VSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP-MNSSKNKDAEFAFGSGHIN 602
+SGTSM+ PH AG AA +K HPDWSP+ IK+A+M TA P +S G+G ++
Sbjct: 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVD 291
Query: 603 PVEA 606
+ A
Sbjct: 292 ALRA 295
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 8e-17
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 35/199 (17%)
Query: 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNT 212
+ V VID+G+ P+ G G ++
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGG---------------------GDGGNDDDDNENGPTD 39
Query: 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAIL 272
D GHGTH A + + G G P A++ KV + + + I
Sbjct: 40 PDDGNGHGTHVAGIIAASA---------NNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIA 90
Query: 273 GAFDDAIAD-GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST 331
A D A AD G D+I +SLGG + + AI A GVL + +AGN GP G+
Sbjct: 91 AAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALA-KLGVLVVAAAGNDGPDGGTN 149
Query: 332 VS---VAPWLMSVAASNTD 347
+ +P +++V A + D
Sbjct: 150 IGYPAASPNVIAVGAVDRD 168
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Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 354 VVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGK 413
V LG+G+T+VG S+ + KT+PLV S D D LC G +D KGK
Sbjct: 2 VTLGNGKTIVGQSL--YPGNLKTYPLVYKSANS----GDVDASLCLPG--SLDPSKVKGK 53
Query: 414 IVICQSFDGFN------EVHKAGAEGSVSLNDVEF--NKVSSVVSLPAVALNEDNFNSIY 465
IV+C + V AG G + ND + V+ LPAV ++ ++ +I
Sbjct: 54 IVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAIL 113
Query: 466 SYLKSTKKPEANI 478
SY+ ST P A I
Sbjct: 114 SYINSTSNPTATI 126
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This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 477 NILSTEAVKDSEAPVVADFSSRGPNEIVP---------DILKPDISAPGVDILAAFSPLG 527
LS AV A FSS G + + KPD++APGVD+ +A
Sbjct: 151 AALSVGAV--DRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGAN 208
Query: 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582
+ +SGTSM+ PH AGVAA + + HPD SP IK A+ TA+
Sbjct: 209 GDGQ---------YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 492 VADFSSRGPNEIVPD-ILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMS 550
++ FSSRGP D +KPD+ APG +I++ SP G SGTSM+
Sbjct: 180 ISYFSSRGPT---GDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSMA 232
Query: 551 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
PH +G A + +P +P +K + TA
Sbjct: 233 TPHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 68/240 (28%), Positives = 100/240 (41%), Gaps = 49/240 (20%)
Query: 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD-ISGN 211
+ V V+D+GI + FGP K GG +F +G Y T+ + +
Sbjct: 15 VKVAVVDTGIDYTHPALG-GCFGPGCK-----VAGGYDF------VGDDYDGTNPPVPDD 62
Query: 212 TARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI 271
D QGHGTH A + N F GV P A + AY+V E I
Sbjct: 63 DPMDCQGHGTHVAGIIAANP-NAYGFTGVA--------PEATLGAYRVFGCSGSTTEDTI 113
Query: 272 LGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS---GPFI 328
+ AF A DG D+IT SLGG + +++D A+ + + GV+ +AGN GPF
Sbjct: 114 IAAFLRAYEDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFY 171
Query: 329 GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRP 388
S+ + +++VA+ + + FSS G T L DV+ P
Sbjct: 172 ASSPASGRGVIAVASVD----------------------SYFSSWGPTNELYLKPDVAAP 209
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 64/238 (26%), Positives = 96/238 (40%), Gaps = 38/238 (15%)
Query: 154 IVGVIDSGIWPESESF-----SDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTT--D 206
+V VIDSG+ P ++F S + + K G N K+ A Y D
Sbjct: 14 VVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND 73
Query: 207 DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCS--PEL 264
DI D HG H A +GN ++ + G+ +G A P A++ A KV S
Sbjct: 74 DILDED--DGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA----PEAQLLAMKVFSNPEGG 126
Query: 265 GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
+ A A +DA+ G D+I +SLG D A GV+ + +AGN
Sbjct: 127 STYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGND 186
Query: 325 G--------------PFIGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366
G P G+ S A +++VA++N KV +G + G+S
Sbjct: 187 GNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK------KVPNPNGGQMSGFS 238
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-15
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 46/206 (22%)
Query: 433 GSVSLNDVE---FNK-VSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANIL--------- 479
G V L+D E + + V + A N+ N S S +T P+ +
Sbjct: 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216
Query: 480 -----STEAVKDSEAPVVADFSSRGPNEIVPDI-LKPDISAPGVDILAAFSPLGAVSDDP 533
+ + V + ++ FSS GP PD+ LKPDI+APG +I + V+D+
Sbjct: 217 LTVASANKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYST------VNDN- 266
Query: 534 EDKRQAKFNVVSGTSMSCPHAAGVAA----YVKSFHPDWSP----SAIKSAIMTTAWPMN 585
+ +SGTSM+ PH AG +A +K +P S +K+ +M TA P
Sbjct: 267 ------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPL 320
Query: 586 SSKNKDAEFA---FGSGHINPVEAVN 608
S++ ++ G+G I+ +A+
Sbjct: 321 DSEDTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 477 NILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDK 536
NI++ AV ++ ADFS+ G D +KPDI APG +IL +
Sbjct: 164 NIITVGAVTENGTI--ADFSNYGG---PVDGIKPDIVAPGGNIL------SSGPGGDLGG 212
Query: 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAF 596
+ SGTSM+ P AG AA + S +P +P +++ ++TTA + S +F
Sbjct: 213 YDSH----SGTSMAAPLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLD---RSF 265
Query: 597 GSGHINPVEAVN 608
G G +N +AV
Sbjct: 266 GYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 22/128 (17%)
Query: 489 APVVADFSSRGP-NEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGT 547
A V + FSS GP NE+ LKPD++APG +IL+ + PL + V+SGT
Sbjct: 185 ASVDSYFSSWGPTNEL---YLKPDVAAPGGNILSTY-PLAGGG----------YAVLSGT 230
Query: 548 SMSCPHAAGVAA-YVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAF------GSGH 600
SM+ P+ AG AA +++ H SP+ ++ + +TA P+ S A G+G
Sbjct: 231 SMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGL 290
Query: 601 INPVEAVN 608
+N +A+
Sbjct: 291 VNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 52 VHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL 111
+IV SS + + ++ SYK FNGFAAKLT+ E +KL
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAEKL 58
Query: 112 ASMEGVVSVFPSRTLQLH 129
V V P + ++LH
Sbjct: 59 RKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 53/238 (22%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
I V V+D+GI F +II +
Sbjct: 2 KGITVAVLDTGIDAPHPDFD------------------------GRIIRFADFVNTVNGR 37
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
T D GHGTH A +G+ G +G P A + KV +E+
Sbjct: 38 TTPYDDNGHGTHVAGIIAGS-------GRASNGKYKGVAPGANLVGVKVLDDSGSGSESD 90
Query: 271 ILGAFDDAIAD----GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGP 326
I+ D + + + ++ +SLG ++ +D + G++ + +AGNSGP
Sbjct: 91 IIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGP 150
Query: 327 FIGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382
G+ S +P +++V A + + I+ FSS+G P DG
Sbjct: 151 GPGTITSPGNSPKVITVGAVDDNG-------------PHDDGISYFSSRG---PTGDG 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 57/202 (28%), Positives = 80/202 (39%), Gaps = 47/202 (23%)
Query: 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGN 211
+ V VID+GI K GG NFT N
Sbjct: 1 GVKVAVIDTGIDSSHPDL------------KLNIVGGANFT--------------GDDNN 34
Query: 212 TARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAET 269
+D GHGTH A A N V G A P A + A KV + + G
Sbjct: 35 DYQDGNGHGTHVAGIIAALDNGV-------GVVGVA----PEADLYAVKVLN-DDGSGTY 82
Query: 270 -AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
I+ + AI +G+DII +SLGG + ++ I A A G+L + +AGNSG
Sbjct: 83 SDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVVAAAGNSGNGD 138
Query: 329 GSTVSVA--PWLMSVAASNTDR 348
S A P +++V A +++
Sbjct: 139 SSYDYPAKYPSVIAVGAVDSNN 160
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 8e-13
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 19/88 (21%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
+ S+ G DI+APG DIL++ + G + +SGTSM+ P
Sbjct: 173 SPSSNGGA--------GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAP 213
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTT 580
AGVAA + S +PD +P+ +K+A+++T
Sbjct: 214 IVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 21/90 (23%)
Query: 491 VVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMS 550
A FSS GP +++APGVDIL+ + P + +SGTSM+
Sbjct: 161 NRASFSSTGPE--------VELAAPGVDILSTY-PNN------------DYAYLSGTSMA 199
Query: 551 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580
PH AGVAA V S P+ + + ++ A+ T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAV 529
++ P + + + VA FSSRGP +KPD+ APG IL+A S G +
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGI 236
Query: 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAA----------YVKSFHPDWSPSAIKSAIMT 579
D + +K SGTSM+ P AG AA Y F+P S + +K+ ++
Sbjct: 237 GDTSDSAYTSK----SGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLIN 290
Query: 580 TA 581
+A
Sbjct: 291 SA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
DI APGVDIL+A SD +SGTSM+ PH AG+AAY+ S PD SP
Sbjct: 194 DIFAPGVDILSA----WIGSDT-------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 571 SAIKSAIMTTA 581
+ +K+ ++ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 477 NILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDK 536
NI+S A +A FS+ G + D++APGVDIL S P
Sbjct: 176 NIISVAAT--DSNDALASFSNYGKKTV-------DLAAPGVDIL---------STSPGGG 217
Query: 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
SGTSM+ PH AG AA + S +P+ + + IK AI+++A
Sbjct: 218 YGYM----SGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 476 ANILSTEAVKDSEAPVVADFSSRGPNEIVP-DILKPDISAPGVDILAAFSPLGAVSDDPE 534
+ A ++ V+ADFSSRGP +KPDISAPGV+I +A G
Sbjct: 173 PESFAVGATDRND--VLADFSSRGP---STYGRIKPDISAPGVNIRSAVPGGG------- 220
Query: 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP 566
+ SGTSM+ PH AGVAA + S +P
Sbjct: 221 ------YGSSSGTSMAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 21/96 (21%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS RGP +KPDI+APGV+IL A SP G + SGTS++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTA-SPGG------------GYTTRSGTSVAA 403
Query: 552 PHAAGVAA------YVKSFHPDWSPSAIKSAIMTTA 581
AG A V+ P IK+ ++ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 486 DSEAPVVADFSSRGPNEI---VPDIL-KPDISAP-GVDILAAFSPLGAVSDDPEDKRQAK 540
S+ SS P I P++ KPD++AP GV+ + D P
Sbjct: 163 GSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVN-----GTVDGDGDGP-----PN 212
Query: 541 FNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGH 600
F GTS + PHAAGVAA V S +P +P+ I+ A+ +TA M + A GSG
Sbjct: 213 F---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP---GYDNASGSGL 266
Query: 601 INPVEAV 607
++ AV
Sbjct: 267 VDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 32/177 (18%)
Query: 154 IVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTA 213
VGV+D+GI S + G + +D
Sbjct: 1 TVGVLDTGIDVNHPDLSG------------------RYIGLAYRNGYDF-VDNDPDPTPD 41
Query: 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILG 273
D GHGTH A + + + GV P+A++ + KV G ++ + G
Sbjct: 42 DDNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVLPGSGG-TDSELAG 92
Query: 274 AFDDAI--ADGVDIITISLGGQNTLNFTQDVIAIGSF--HAMAKGVLTLHSAGNSGP 326
A + A + + +I +SLG + + A KG L + +AGN G
Sbjct: 93 AIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGD 149
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 45/190 (23%), Positives = 63/190 (33%), Gaps = 50/190 (26%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ + VGVIDSGI F+ ++ A YY + +G
Sbjct: 3 AGVKVGVIDSGIDLSHPEFAG------------------------RVSEASYYVAVNDAG 38
Query: 211 NTA-RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSP-ELGCA 267
+ D HGTH A + G GV P A + + + + +
Sbjct: 39 YASNGDGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASAGSTFS 88
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGS------------FHAMAKGV 315
+ I A+D A GV II S GG T GS A G
Sbjct: 89 DADIAAAYDFLAASGVRIINNSWGGNPA-IDTVSTTYKGSAATQGNTLLAALARAANAGG 147
Query: 316 LTLHSAGNSG 325
L + +AGN G
Sbjct: 148 LFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 57/216 (26%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWK--GACKGGRNFTCNNKIIGARYYTTDDI 208
D++V VID+G+ ++ W G G N + DDI
Sbjct: 2 GDVVVAVIDTGV-----DYNHPDL--KDNMWVNPGEIPGNGIDDDGNGYV-------DDI 47
Query: 209 SG-------NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKV 259
G N D GHGTH A A GN G G A G + +I K
Sbjct: 48 YGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNN---------GIGIA-GVAWNVKIMPLKF 97
Query: 260 CSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLH 319
+ + + A D A+ G II S GG +D IA A+ G+L +
Sbjct: 98 LGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVA 153
Query: 320 SAGNSGPFIGSTVSV-----APWLMSVAASN-TDRL 349
+AGN G T + ++SVAA++ D L
Sbjct: 154 AAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDAL 189
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 58/231 (25%), Positives = 85/231 (36%), Gaps = 30/231 (12%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
IVGV D+G+ F D F N + KI+ RY + D
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNFN------------KTNLF-HRKIV--RYDSLSD--- 48
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
T D+ GHGTH A +G +S +G P A++ + +
Sbjct: 49 -TKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPP 102
Query: 271 ILGA-FDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG 329
L F G I + S G +T A F +L + SAGN G
Sbjct: 103 DLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDGS 162
Query: 330 STVSVAPW---LMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTF 377
+T+ +++V ASN V G GQ+ ++ SFSS+G T+
Sbjct: 163 NTIGSPATAKNVLTVGASNNPS--VSNGEGGLGQSDNSDTVASFSSRGPTY 211
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FS+ G + D+SAPG IL+ + +SGTSM+ P
Sbjct: 190 ASFSNYG-KWV-------DVSAPGGGILSTTPDGD-------------YAYMSGTSMATP 228
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AGVAA + S P S S ++ A+ TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 171 DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGN 230
D G G +F N +I + D GHGTH + T G
Sbjct: 8 DTGVDADHPDLAGRVAQWADFDENRRISATEVF-----------DAGGHGTHVSGTIGGG 56
Query: 231 EVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISL 290
K GV G A P A + KV G + + I+ + A+ D++++SL
Sbjct: 57 GAK-----GVYIGVA----PEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSL 106
Query: 291 GGQNTLN--FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
GG + V A+ + G L + SAGN G + A +SV A + D
Sbjct: 107 GGTYYSEDPLEEAVEALSN----QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 51/197 (25%), Positives = 74/197 (37%), Gaps = 49/197 (24%)
Query: 204 TTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPE 263
T + G +D GHGTH A T G +V G G ARG A IA +
Sbjct: 33 TKSFVGGEDVQDGHGHGTHCAGTIFGRDVP-----GPRYGVARG----AEIALIGKVLGD 83
Query: 264 LGCAETAILGAFDDAIADGVDIITISLG------------------------GQNTLNFT 299
G + IL A+A+G D+I++SLG Q F
Sbjct: 84 GGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFD 143
Query: 300 QDVIAIGSFHAMAKGVLTLHSAGNS-----GPFIGSTVSVAPWLMSVAASNTDRLFVDKV 354
+ + + A+A+G L + +AGN G + P M VAA V +
Sbjct: 144 ALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA-------VGAL 196
Query: 355 VLGSGQTLVGYSINSFS 371
G+T ++ +FS
Sbjct: 197 ----GRTGNFSAVANFS 209
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 48/197 (24%), Positives = 68/197 (34%), Gaps = 54/197 (27%)
Query: 153 IIVGVIDSGIWP----ESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARY-YTTDD 207
+ V VIDSGI P S S N + Y
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYS--------------------KNLVPKGGYDGKEAG 41
Query: 208 ISGNTAR--DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG 265
+G+ D GHGT A + N G +G P I +Y+V
Sbjct: 42 ETGDINDIVDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVFGSCGS 89
Query: 266 CAETAILGAFDDAIADGVDIITISLGG-----------QNTLNFTQDVIAIGSFHAMAKG 314
+ I+ A DA DGVD+I +SLGG N + I +A +KG
Sbjct: 90 AESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN----YAKSKG 145
Query: 315 VLTLHSAGNSGPFIGST 331
+ + +AGN G + +
Sbjct: 146 SIVVAAAGNDGLDVSNK 162
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 478 ILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR 537
+L+ ++ P + FS GP D++APG +I VS P
Sbjct: 178 VLAVGSIDRDGTP--SSFSLPGP--------WVDLAAPGENI---------VSLSP---G 215
Query: 538 QAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA-WPMNSSKNKDAEFAF 596
SGTS + P +G AA V+S PD + + ++ I TA P ++
Sbjct: 216 GDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATADHPARGGRD----DYV 271
Query: 597 GSGHINPVEAV 607
G G ++PV A+
Sbjct: 272 GYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 415 VICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKP 474
VI S G + A G + + V + A A N+ + S P
Sbjct: 247 VINLSLGGSLSDSASPALGD----ALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYP 302
Query: 475 EANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534
N+++ A+ S+ VA FS+ G V DI+APGV+IL L AV+ P
Sbjct: 303 APNVIAVGALDLSDT--VASFSNDGSPTGV------DIAAPGVNIL----SLSAVNTLPG 350
Query: 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMTTA 581
D A + +SGTSM+ PH +GVAA V S +P + +P+ +++ I+TTA
Sbjct: 351 D--GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 476 ANILSTEAVKDSEAPVVADFSSRGPNEIVPD-ILKPDISAPGVDILAAFSPLGAVSDDPE 534
N+LS AV + A FSS GP D LKPD+ A G I
Sbjct: 172 ENVLSVGAVDANG--NKASFSSIGPT---ADGRLKPDVMALGTGIYVINGD--------- 217
Query: 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
+GTS SCP AG+ A + HP+W+ IK AI+ +A
Sbjct: 218 ----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A +S+ G D+ APGV I + G+ D P + SGTS + P
Sbjct: 167 ASYSNYGNY--------VDLVAPGVGIWTTGTGRGSAGDYPGGG----YGSFSGTSFASP 214
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTT 580
AAGVAA + S +P+ +P+ ++ + +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 13/50 (26%)
Query: 510 PDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAA 559
DI+APGVDI++A + +SGTSM+ PH AGVAA
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAA 249
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 457 NEDNFNSIYSYLKSTKKPEANILSTEAV-KDSEAPVVADFSSRGPNEIVPDILKPDISAP 515
NF + Y +P N ++ A K E +VA+FS+ G + D+ AP
Sbjct: 187 ITPNFPNDYDKNGG--EPANNFITVGASSKKYENNLVANFSNYGKKNV-------DVFAP 237
Query: 516 GVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKS 575
G I + +P D SGTSM+ P +GVAA + S++P+ + +K
Sbjct: 238 GERIYST-TPDNEYETD------------SGTSMAAPVVSGVAALIWSYYPNLTAKEVKQ 284
Query: 576 AIMTTA 581
I+ +
Sbjct: 285 IILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 55/230 (23%), Positives = 81/230 (35%), Gaps = 70/230 (30%)
Query: 134 WDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTC 193
D +G ++ S + V V+D+G+ P P K G +F
Sbjct: 13 LDQIGAPKAWDITGG--SGVTVAVVDTGVDPTH-----------PDLLKVKFVLGYDFVD 59
Query: 194 NNKIIGARYYTTDDISGNTARDIQGHGTHTASTA---SGNEVKDASFFGVGQGTARGGVP 250
N+ + A D GHGTH A + N G G A G P
Sbjct: 60 ND---------------SDAMDDNGHGTHVAGIIAAATNN----------GTGVA-GVAP 93
Query: 251 SARIAAYKVCSPELGCAETAILGAF----DDAIADGV--------DIITISLGGQNTLNF 298
A+I KV L A IA+G+ +I +SLGG
Sbjct: 94 KAKIMPVKV------------LDANGSGSLADIANGIRYAADKGAKVINLSLGG----GL 137
Query: 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348
+ +A KGV+ + +AGN G S + P ++VAA++ D
Sbjct: 138 GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS--GTSMS 550
A +S+ GP D+SAPG D + + G + GTSM+
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255
Query: 551 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580
PH AGVAA +KS +P +P+ I+S + +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 33/174 (18%)
Query: 205 TDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL 264
T+ + T D GHGT A + + + F P A I ++V +
Sbjct: 33 TNWTNEKTLDDGLGHGTFVAGVIASSREQCLGF-----------APDAEIYIFRVFTNNQ 81
Query: 265 GCAETAILGAFDDAIADGVDIITISLGGQNTLN--FTQDVIAIGSFHAMAKGVLTLHSAG 322
+ L AF+ AI +D++ +S+GG + ++ F V + A ++ + + G
Sbjct: 82 VSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWEL-----TANNIIMVSAIG 136
Query: 323 NSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKT 376
N GP G+ ++ A D V+G G +I FSS+G T
Sbjct: 137 NDGPLYGT--------LNNPADQMD-------VIGVGGIDFDDNIARFSSRGMT 175
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 68/267 (25%)
Query: 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNT 212
I + VID+G E+F A K N +I+G + D S NT
Sbjct: 2 ITIAVIDAGFPKVHEAF--------------AFKHLFK---NLRILGEYDFV--DNSNNT 42
Query: 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAI- 271
HGT ST +G GV GTA A+Y + E +ET +
Sbjct: 43 NYTDDDHGTAVLSTMAGYTP------GVMVGTAPN-------ASYYLARTEDVASETPVE 89
Query: 272 ----LGAFDDAIADGVDIITISLGGQ----NTLNFTQD-------VIAIGSFHAMAKGVL 316
+ A + A + GVDII+ SLG T ++T I+ + A +KG+L
Sbjct: 90 EDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGML 149
Query: 317 TLHSAGNSGPFIGSTVSV---APWLMSVAASNTD---------------RLFVDKVVLGS 358
++SAGN G + A ++SV A + + RL D + LG+
Sbjct: 150 VVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVMALGT 209
Query: 359 GQTLVGYSINSFSSKGKTF--PLVDGM 383
G ++ N + G +F PL+ G+
Sbjct: 210 GIYVINGDGNITYANGTSFSCPLIAGL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FS+ G V DI+APGV + + P + +SGTSM+
Sbjct: 198 KASFSNYG--RWV------DIAAPGVGTILSTVPKLDGDGG------GNYEYLSGTSMAA 243
Query: 552 PHAAGVAAYVKSFHPDW-SPSAIKSAIMTT 580
PH +GVAA V S PD +P I+ + +
Sbjct: 244 PHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 41/176 (23%), Positives = 60/176 (34%), Gaps = 56/176 (31%)
Query: 157 VIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216
V+D+GI F GGR + D + G+ D
Sbjct: 31 VLDTGIRTTHVEF-----------------GGRAI-----------WGADFVGGDPDSDC 62
Query: 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFD 276
GHGTH A T G +GV A+ A + A KV + I+ +
Sbjct: 63 NGHGTHVAGTVGGKT------YGV----AKK----ANLVAVKVLDCNGSGTLSGIIAGLE 108
Query: 277 DAIADGVD-----IITISLGGQ--NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
D + +SLGG L+ +A A+ GV+ + +AGNS
Sbjct: 109 WVANDATKRGKPAVANMSLGGGASTALD---AAVA----AAVNAGVVVVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 49/188 (26%)
Query: 207 DISGNTA--RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL 264
D GNT D GHGTHT T GN+ G G G P AR A +
Sbjct: 40 DPVGNTPLPYDDNGHGTHTMGTMVGND---------GDGQQIGVAPGARWIACRALD-RN 89
Query: 265 GCAETAILGAFDDAIA----DGV--------DIITISLGGQNTLNFT-QDVIAIGSFHAM 311
G + L +A G D+I S GG + N Q +A
Sbjct: 90 GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAA----WR 145
Query: 312 AKGVLTLHSAGNSGPFIGSTVSVA---PWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368
A G+ + +AGN GP + + P +V A++ + + +
Sbjct: 146 AAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDV-----------------LA 188
Query: 369 SFSSKGKT 376
FSS+G +
Sbjct: 189 DFSSRGPS 196
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
V +SSRGP+ KPD++A G A L + F++ GTSM+
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDG---NEAFDLFGGTSMAT 275
Query: 552 PHAAGVAAYV-----KSFHPD-WSPSAIKSAIMTTA 581
P AG AA V + + P +++ +M+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARI-----AAYKVCSPELGCAETAILG 273
HGT AS G G R G+ + E A A+
Sbjct: 38 HGTAVASLL------------AGAGAQRPGLLPGADLYGADVFGRAGGGEGASAL-ALAR 84
Query: 274 AFDDAIADGVDIITISLGG-QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGP 326
A D GV ++ ISL G N L +A A A+G++ + +AGN GP
Sbjct: 85 ALDWLAEQGVRVVNISLAGPPNAL--LAAAVAA----AAARGMVLVAAAGNDGP 132
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 44/199 (22%)
Query: 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNT 212
++V +ID+G+ S + P G NF NN D S
Sbjct: 1 VVVAIIDTGVDLNHPDLSGKP-KLVP---------GWNFVSNN----------DPTS--- 37
Query: 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAIL 272
DI GHGT A A+ G G A G P A++ ++ + I
Sbjct: 38 --DIDGHGTACAGVAAAVG-------NNGLGVA-GVAPGAKLMPVRIADSLGYAYWSDIA 87
Query: 273 GAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMA------KGVLTLHSAGNSGP 326
A A +G D+I+ S GG ++ + A KG + L +AGNSG
Sbjct: 88 QAITWAADNGADVISNSWGGSDSTESISS-----AIDNAATYGRNGKGGVVLFAAGNSGR 142
Query: 327 FIGSTVSVAPWLMSVAASN 345
+ S + P +++VAA++
Sbjct: 143 SVSSGYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 56/247 (22%)
Query: 153 IIVGVIDSGI---WPESE-SFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDI 208
IIV V+D+G+ P+ + + +G+ PA G NF N I +
Sbjct: 12 IIVAVVDTGVDGTHPDLQGNGDGDGYDPA--------VNGYNFVPNVGDID----NDVSV 59
Query: 209 SGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
G GHGTH A T + + + GVG GGV P +I + ++ +
Sbjct: 60 GG-------GHGTHVAGTIAA---VNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVG 109
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFT---QDVIAIGSFHAMA---KGVLTLHSA 321
+ A+ A A +G I+ S GG ++ +D +A G + + SA
Sbjct: 110 DDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSA 169
Query: 322 GNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381
GNS + P +++VAA +T+ + SFS+ G
Sbjct: 170 GNSYTDEHRFPAAYPGVIAVAALDTN-----------------DNKASFSNYG------R 206
Query: 382 GMDVSRP 388
+D++ P
Sbjct: 207 WVDIAAP 213
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 48/228 (21%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ V VID+G+ + G+ G +F D
Sbjct: 142 KGVTVAVIDTGV------------DASHPDLAGSAVAGGDFV-------------DGDPE 176
Query: 211 NTARDIQGHGTHTASTASGNEVK-DASFFGVGQGTARGGVPSARIAAYKVCSPELGCAET 269
D GHGTH A T + A GV P A++ KV G E
Sbjct: 177 PPFLDDNGHGTHVAGTIAAVIFDNGAGVAGVA--------PGAKLLLVKVLGSGGGSGEL 228
Query: 270 A-ILGAFDDAIADG--VDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGP 326
+ + + A G D+I +SLGG + + + + + A A GV+ + +AGN G
Sbjct: 229 SDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGS 288
Query: 327 FIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374
+ + ++ AS + V+ G + ++ SFS+ G
Sbjct: 289 ------NASGGDLAYPAS-----YPAPNVIAVGALDLSDTVASFSNDG 325
|
Length = 508 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 496 SSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAA 555
SSRGP D A GV I A P GA++ P Q +++GTSMS P+A
Sbjct: 333 SSRGP---TAD------GALGVSISA---PGGAIASVPNWTLQGS-QLMNGTSMSSPNAC 379
Query: 556 GVAAYV----KSFHPDWSPSAIKSAIMTTAWPM 584
G A + K+ ++P +++ A+ TA +
Sbjct: 380 GGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 13/71 (18%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
D +APGVD+ A + VSGTS + P A + P
Sbjct: 168 DFAAPGVDVWVAAP-------------GGGYRYVSGTSFAAPFVTAALALLLQASPLAPD 214
Query: 571 SAIKSAIMTTA 581
A T
Sbjct: 215 DARARLAATAK 225
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 512 ISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPS 571
++APG +I + G + VSGTS + PH +G AA + P +
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 572 AIKSAIMTTA 581
++ ++TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 21/180 (11%)
Query: 215 DIQGHGTHTASTASGNEVKDASFFGV-GQGTARGGVPSARIAAYKVCSPELGCAETAILG 273
D HGT AS A+G + + +G G+ RG P A+IAA K
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 274 AFDDAIADG---------VDIITISLGGQNTLNF-----TQDVIAIGSFHAMAKGVLTLH 319
FD VD+I+ S G N + GV +
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVS 173
Query: 320 SAGNSGPFIGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS-INSFSSKGKT 376
+AGN GP G+ + A +SV A+ T+ + G G + S+SS+G +
Sbjct: 174 AAGNGGPGYGTITAPGAASLAISVGAA-TNFDYR--PFYLFGYLPGGSGDVVSWSSRGPS 230
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAET--AILGAFD 276
HGTH A A+ + ++ GV P A+I + K+ LG ET A++ A
Sbjct: 187 HGTHVAGIAAAHFPEEPERNGVA--------PGAQIVSIKIGDTRLGSMETGTALVRAMI 238
Query: 277 DAIADGVDIITISLG-GQNTLNFTQDVIAIGSFHAMAK-GVLTLHSAGNSGPFIGSTV 332
AI D+I +S G + N + + + A+ K GV+ + SAGN+GP + STV
Sbjct: 239 AAIETKCDLINMSYGEATHWPNSGRIIELMN--EAVNKHGVIFVSSAGNNGPAL-STV 293
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 494 DFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDK-----RQAKFNVVSGTS 548
+S GP P +KPD+ A G ++ S A D F V GTS
Sbjct: 200 ATTSSGPG--SPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTS 257
Query: 549 MSCPHAAGVAAYVKSFHPDWSPSAIK 574
+ P AA +AA + + P+ SP I+
Sbjct: 258 FAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 38/112 (33%)
Query: 152 DIIVGVIDSGIWPESESFSDEGF-------------GPAPKKWKGACKGGRNFTCNNKII 198
++VG+ID+GI F +E G P
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP---------------PGGYY 49
Query: 199 GARYYTTDDISGNTA----------RDIQGHGTHTASTASGNEVKDASFFGV 240
G YT + I+ A RD GHGTH A A+GN + F GV
Sbjct: 50 GGGEYTEEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDFKGV 101
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 753 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.89 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.95 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.9 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.88 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.46 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.25 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.19 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.11 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.02 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.94 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.93 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.91 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.81 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.73 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.73 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.69 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.63 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.57 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.54 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.49 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.45 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.39 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.28 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.51 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 95.36 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.23 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.11 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.86 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 91.76 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 91.12 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 90.75 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 90.61 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 89.77 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.73 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 81.71 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=440.47 Aligned_cols=290 Identities=57% Similarity=0.912 Sum_probs=248.4
Q ss_pred eccccCCCcccccccccccc-----CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccc---cCcce
Q 044745 126 LQLHTTRSWDFMGLNQSITR-----KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT---CNNKI 197 (753)
Q Consensus 126 ~~~~~~~s~~~~g~~~~~~~-----~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~---~n~kl 197 (753)
+++++++++.++|++ .+|. .+++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. |++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 467889999999999 5555 48999999999999999999999999988889999999999988774 99999
Q ss_pred eeeeecCCC---------CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCH
Q 044745 198 IGARYYTTD---------DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268 (753)
Q Consensus 198 ~g~~~~~g~---------~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 268 (753)
++.++|... .....++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++....+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999432 12346678899999999999999987666566666677899999999999999987334889
Q ss_pred HHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCcc
Q 044745 269 TAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDR 348 (753)
Q Consensus 269 ~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~ 348 (753)
+++++||++|++++++|||||||... .....+.+..++..+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGS-PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999883 24566788888889999999999999999988778888899999998621
Q ss_pred ceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHh
Q 044745 349 LFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHK 428 (753)
Q Consensus 349 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~ 428 (753)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCC
Q 044745 429 AGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDIL 508 (753)
Q Consensus 429 ~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~ 508 (753)
.
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 509 KPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 509 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|+|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7799999999999987531 1111223367999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=447.24 Aligned_cols=289 Identities=19% Similarity=0.172 Sum_probs=210.6
Q ss_pred cccc--CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcc---eeeeeecCCCCCCCCCCCCC
Q 044745 142 SITR--KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNK---IIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 142 ~~~~--~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~k---l~g~~~~~g~~~~~~~~~D~ 216 (753)
.+|+ .+.+|+||+|||||||||++||+|.+.- .+-+....|....+. .++. -+.+++|..+ ..+|.|+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-~~n~~el~GrdgiDd---D~nG~vdd~~G~nfVd~---~~~P~D~ 377 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-DVNVKELHGRKGIDD---DNNGNVDDEYGANFVNN---DGGPMDD 377 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-ccccccccCcccccc---ccCCcccccccccccCC---CCCCCCC
Confidence 5665 4678999999999999999999998641 000000111000000 0111 1223444221 2456899
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.||||||||||||...++ ..+.||||+|+|+++|+++. .| +..+++++||+||++.|++|||||||+..
T Consensus 378 ~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~-~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~- 447 (639)
T PTZ00262 378 NYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDS-HKLGRLGDMFKCFDYCISREAHMINGSFSFDE- 447 (639)
T ss_pred CCcchHHHHHHhccccCC--------CceeeeecccccceEEEecC-CCCccHHHHHHHHHHHHHCCCCEEEeccccCC-
Confidence 999999999999975431 12389999999999999987 55 78899999999999999999999999762
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--------------ccC----CCCceEEeecccCccceeeeEEeC
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--------------TVS----VAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
....+..++.+|.++|++||+||||+|..... ++. ..|++|+|||+..+.
T Consensus 448 ---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--------- 515 (639)
T PTZ00262 448 ---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--------- 515 (639)
T ss_pred ---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---------
Confidence 23467788889999999999999999864311 111 235677777643221
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
......+.||++|. .++||+|||+
T Consensus 516 -------------------------------------------------~~~~s~s~~Snyg~-------~~VDIaAPG~ 539 (639)
T PTZ00262 516 -------------------------------------------------NNQYSLSPNSFYSA-------KYCQLAAPGT 539 (639)
T ss_pred -------------------------------------------------CCcccccccccCCC-------CcceEEeCCC
Confidence 00012344566652 1349999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccC
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFG 597 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G 597 (753)
+|+++++.+ .|..++|||||||||||+||||++++|+|+++||+++|+.||.+++.. +..+|
T Consensus 540 dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~-----~n~~~ 601 (639)
T PTZ00262 540 NIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL-----KNKVK 601 (639)
T ss_pred CeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-----CCccc
Confidence 999998764 699999999999999999999999999999999999999999987654 22233
Q ss_pred -CCCCCccccCCCCeee
Q 044745 598 -SGHINPVEAVNPGLVY 613 (753)
Q Consensus 598 -~G~in~~~Al~~glv~ 613 (753)
.|+||+++|++..+-+
T Consensus 602 wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIAS 618 (639)
T ss_pred cCcEEcHHHHHHHHHhc
Confidence 3899999999866644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=407.15 Aligned_cols=243 Identities=25% Similarity=0.363 Sum_probs=199.5
Q ss_pred ccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchh
Q 044745 144 TRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHT 223 (753)
Q Consensus 144 ~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThV 223 (753)
|+++++|+||+|||||||||.+||+|.+. ....+|..+ ....|..||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~-------------------------~~~~~~~~~----~~~~d~~gHGT~V 51 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV-------------------------KERTNWTNE----KTLDDGLGHGTFV 51 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc-------------------------ccccccCCC----CCCCCCCCcHHHH
Confidence 89999999999999999999999999742 011122211 3456788999999
Q ss_pred hcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccH
Q 044745 224 ASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDV 302 (753)
Q Consensus 224 AGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~ 302 (753)
||||+|+.. .+.||||+|+|+.+|++.+ .+ +..+.++++|+||++++++|||||||... +.+.+
T Consensus 52 AGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~-~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~ 116 (255)
T cd07479 52 AGVIASSRE-----------QCLGFAPDAEIYIFRVFTN-NQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKP 116 (255)
T ss_pred HHHHHccCC-----------CceeECCCCEEEEEEeecC-CCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcH
Confidence 999999741 1389999999999999987 55 66788999999999999999999999862 23456
Q ss_pred HHHHHHHHhhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEE
Q 044745 303 IAIGSFHAMAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLV 380 (753)
Q Consensus 303 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv 380 (753)
+..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 117 ~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------------- 163 (255)
T cd07479 117 FVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD--------------------------------- 163 (255)
T ss_pred HHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC---------------------------------
Confidence 7777778889999999999999976443 34566889999875422
Q ss_pred eCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhh
Q 044745 381 DGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDN 460 (753)
Q Consensus 381 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 460 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCC----CCCCCCCCceeeCCccEEeccCCCCCCCCCCCCc
Q 044745 461 FNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNE----IVPDILKPDISAPGVDILAAFSPLGAVSDDPEDK 536 (753)
Q Consensus 461 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 536 (753)
+.++.|||+|++. ..++++||||.|||.+|+++...
T Consensus 164 -----------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~----------- 203 (255)
T cd07479 164 -----------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK----------- 203 (255)
T ss_pred -----------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-----------
Confidence 4578899999652 13678999999999999987654
Q ss_pred ccccceeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCCCCC
Q 044745 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHP----DWSPSAIKSAIMTTAWPMN 585 (753)
Q Consensus 537 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~ls~~~ik~~L~~TA~~~~ 585 (753)
..|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 204 --~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 --GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3688999999999999999999999998 7999999999999999875
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=409.69 Aligned_cols=271 Identities=26% Similarity=0.243 Sum_probs=204.9
Q ss_pred CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcc
Q 044745 147 RSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAST 226 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGi 226 (753)
+++|+||+|||||||||.+||++.+...+ ++.+...+..+ .....|..+||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--------------------~l~~~~~~~~~---~~~~~d~~gHGT~vAgi 57 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG--------------------DLPGNVNVLGD---LDGGSGGGDEGRAMLEI 57 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC--------------------CCCcceeeccc---cCCCCCCCchHHHHHHH
Confidence 57899999999999999999865432111 11111111111 13456788999999999
Q ss_pred cccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHH
Q 044745 227 ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIG 306 (753)
Q Consensus 227 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a 306 (753)
| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||......+.+..+..+
T Consensus 58 i------------------~GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~a 114 (275)
T cd05562 58 I------------------HDIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQA 114 (275)
T ss_pred H------------------hccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHH
Confidence 8 578999999998863 34788999999999999999999999863332344577888
Q ss_pred HHHHhhC-CcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCC
Q 044745 307 SFHAMAK-GVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMD 384 (753)
Q Consensus 307 ~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~ 384 (753)
+.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 115 i~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------------------ 164 (275)
T cd05562 115 VDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------------------ 164 (275)
T ss_pred HHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------------------
Confidence 8888887 9999999999998643 3356789999999986542100000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHH
Q 044745 385 VSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSI 464 (753)
Q Consensus 385 ~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 464 (753)
|.. .
T Consensus 165 -------------~~~------------------------------~--------------------------------- 168 (275)
T cd05562 165 -------------DPA------------------------------P--------------------------------- 168 (275)
T ss_pred -------------ccc------------------------------c---------------------------------
Confidence 000 0
Q ss_pred HHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc-cEEeccCCCCCCCCCCCCccccccee
Q 044745 465 YSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV-DILAAFSPLGAVSDDPEDKRQAKFNV 543 (753)
Q Consensus 465 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~ 543 (753)
.......+.||++||+. ++++||||+|||. ++.+.... +.|..
T Consensus 169 ---------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~ 212 (275)
T cd05562 169 ---------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPN 212 (275)
T ss_pred ---------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Cceee
Confidence 00012345678899986 7899999999975 44444332 47899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 544 VSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
++|||||||||||++|||+|++|+|+++|||++|++||+++...+ .+..||||+||+.+|++
T Consensus 213 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g---~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 213 FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG---YDNASGSGLVDADRAVA 274 (275)
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC---CCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999999887544 36799999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=413.19 Aligned_cols=288 Identities=25% Similarity=0.223 Sum_probs=193.1
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|||||||||.+||+|.++... .|.. .|.+...+....++.+. ....+.|++||||||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~--~~~~~~D~~gHGThvAGiiag 68 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGG--FYVIMYDFFSHGTSCASVAAG 68 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCC--ccCCCCCccccchhHHHHHhc
Confidence 89999999999999999999754210 1110 11111122222233221 113467899999999999999
Q ss_pred Cccccccccccc-ccceeecccccceeccccccCCCCCCHHHHHH-------HHHHH--HHCCCcEEEeecCCCCCCC--
Q 044745 230 NEVKDASFFGVG-QGTARGGVPSARIAAYKVCSPELGCAETAILG-------AFDDA--IADGVDIITISLGGQNTLN-- 297 (753)
Q Consensus 230 ~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~gvdVIn~SlG~~~~~~-- 297 (753)
......+.+++. ...+.||||+|+|+.+|++.....+....+.+ +++|. .+++++|||||||......
T Consensus 69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 864433322221 23459999999999999987522233333333 33443 3679999999999862211
Q ss_pred --CcccHHHHHHHHH-hhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCC
Q 044745 298 --FTQDVIAIGSFHA-MAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS 372 (753)
Q Consensus 298 --~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 372 (753)
...+..+...+.+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+..
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------- 209 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY------------------- 209 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh-------------------
Confidence 1122333333332 48999999999999986443 44578999999998643100000
Q ss_pred CCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccccc
Q 044745 373 KGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLP 452 (753)
Q Consensus 373 ~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 452 (753)
.+ ..
T Consensus 210 -----~~---------------------------------------------------------~~-------------- 213 (311)
T cd07497 210 -----LF---------------------------------------------------------GY-------------- 213 (311)
T ss_pred -----hh---------------------------------------------------------cc--------------
Confidence 00 00
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC
Q 044745 453 AVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532 (753)
Q Consensus 453 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 532 (753)
.....+.++.||||||+. ++++||||+|||++|+++.+......
T Consensus 214 --------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~-- 257 (311)
T cd07497 214 --------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG-- 257 (311)
T ss_pred --------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc--
Confidence 001236689999999987 89999999999999999876542100
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcC
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP------DWSPSAIKSAIMTTA 581 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~ls~~~ik~~L~~TA 581 (753)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 -~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 -ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred -ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011224699999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=421.17 Aligned_cols=311 Identities=30% Similarity=0.353 Sum_probs=237.2
Q ss_pred ccccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCC-----ccccccccCCCccccCcceeeeeecCCCCCCCCCCCC
Q 044745 142 SITRKRS-VESDIIVGVIDSGIWPESESFSDEGFGPAP-----KKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARD 215 (753)
Q Consensus 142 ~~~~~~~-~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~-----~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D 215 (753)
.+|+++. +|+||+|||||||||++||+|.+....+.. ..+...+..+...+.+.+++.+++|.....+.....|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 999999999999999999999866443321 1233334444555678899999988544322233557
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccC--CCCCCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSP--ELGCAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. ...+....++++++++++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999864321 1234599999999999999973 1347888999999999999999999999988
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc----------------cCCCCceEEeecccCccceeeeEEeC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST----------------VSVAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
.........+..++.++.++|++||+||||+|...... +...+++|+||++...
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 44435566788888899999999999999998654321 1234556666553310
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
......+.++.||+|||+. .+++||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCC
Confidence 0001235678999999987 8899999999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhcCCCCCCC-C
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSA----IKSAIMTTAWPMNSS-K 588 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~----ik~~L~~TA~~~~~~-~ 588 (753)
+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+.... +
T Consensus 258 ~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~ 324 (346)
T cd07475 258 NIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED 324 (346)
T ss_pred CeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC
Confidence 999987653 6889999999999999999999998 79999876 788999999953322 1
Q ss_pred --CCCCCCccCCCCCCccccCC
Q 044745 589 --NKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 589 --~~~~~~~~G~G~in~~~Al~ 608 (753)
....+..+|+|+||+.+|++
T Consensus 325 ~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 325 TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccCCccccCcchhcHHHhhC
Confidence 11246788999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=425.08 Aligned_cols=406 Identities=23% Similarity=0.240 Sum_probs=248.0
Q ss_pred CCCCCcEEEEEecCCCCCCCCccC-CCCCCCCccccccccCCCccccCcceeeeeecC----------CCCCCCCCCCCC
Q 044745 148 SVESDIIVGVIDSGIWPESESFSD-EGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT----------TDDISGNTARDI 216 (753)
Q Consensus 148 ~~G~GV~VaVIDtGid~~Hp~f~d-~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~----------g~~~~~~~~~D~ 216 (753)
++|+||+|||||||||+.||+|++ .|.+++...|++....+..- ....+...+. .+..+.....|+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999985 46678888998877654321 1111111111 112233456789
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-----------CCHHHHHHHHHHHHHC----
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-----------CAETAILGAFDDAIAD---- 281 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~a~~~---- 281 (753)
.||||||||||||+..+ ...+.||||+|+|+++|++.. .+ +..++++.||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~-~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~ 148 (455)
T cd07478 78 NGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQA-KKYLREFYEDVPFYQETDIMLAIKYLYDKALEL 148 (455)
T ss_pred CCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecC-CCcccccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999643 233499999999999999987 33 5688999999999874
Q ss_pred -CCcEEEeecCCCCCCCCcccHHHHHHHHHhhC-CcEEEEecCCCCCCCCCccCC-CC----c--eEEeecccCccceee
Q 044745 282 -GVDIITISLGGQNTLNFTQDVIAIGSFHAMAK-GVLTLHSAGNSGPFIGSTVSV-AP----W--LMSVAASNTDRLFVD 352 (753)
Q Consensus 282 -gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-~p----~--vitVga~~~~~~~~~ 352 (753)
.+.|||||||...+++...+++++++..+.++ |++||+||||+|....+.... .+ . -+.|+... ..+.-
T Consensus 149 ~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~~~ 226 (455)
T cd07478 149 NKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGFNL 226 (455)
T ss_pred CCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cceEE
Confidence 46799999999877888889999999887776 999999999999854443321 00 0 12222211 11111
Q ss_pred eEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCC--CCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcC
Q 044745 353 KVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCE--SDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAG 430 (753)
Q Consensus 353 ~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~G 430 (753)
.+....-..+ ++....+.+...+.+.......... .-.....|. .-..+....|.-.+.-+ ..+ ...|
T Consensus 227 eiW~~~~d~~---~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v---~y~~~~~~~g~~~i~i~---~~~-~~~G 296 (455)
T cd07478 227 EIWGDFPDRF---SVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYV---YYYLPEPYTGDQLIFIR---FKN-IKPG 296 (455)
T ss_pred EEecCCCCEE---EEEEECCCCCccCccCcCCCcceeEEEEECCeEEEE---EEcCCCCCCCCeEEEEE---ccC-CCcc
Confidence 1111000000 0000000010000000000000000 000000000 00001111222111111 001 1112
Q ss_pred ceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEcc--c---eeec-CCCCCceecccCCCCCCCC
Q 044745 431 AEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILS--T---EAVK-DSEAPVVADFSSRGPNEIV 504 (753)
Q Consensus 431 a~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~--~---~~~~-~~~~~~~a~fSs~GP~~~~ 504 (753)
-.-+. ++.....+.....++|...+..++. .++.+.+..+++++. . ++.. +...+.++.||||||+.
T Consensus 297 iW~i~-~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 297 IWKIR-LTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred ceEEE-EEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 22222 3333322223455666554443332 344555566666621 1 1222 23345699999999987
Q ss_pred CCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHH
Q 044745 505 PDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH------PDWSPSAIKSAIM 578 (753)
Q Consensus 505 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~ls~~~ik~~L~ 578 (753)
++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 8999999999999999998864 79999999999999999999999975 5679999999999
Q ss_pred hcCCCCCCCCCCCCCCccCCC
Q 044745 579 TTAWPMNSSKNKDAEFAFGSG 599 (753)
Q Consensus 579 ~TA~~~~~~~~~~~~~~~G~G 599 (753)
+||+++..... .+.+||||
T Consensus 437 ~tA~~~~~~~~--pn~~~GyG 455 (455)
T cd07478 437 RGARRRPGDEY--PNPEWGYG 455 (455)
T ss_pred HhCccCCCCCC--CCCCCCCC
Confidence 99999874433 37899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=406.11 Aligned_cols=283 Identities=31% Similarity=0.456 Sum_probs=226.9
Q ss_pred ccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC-------CCCC
Q 044745 138 GLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD-------DISG 210 (753)
Q Consensus 138 g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~-------~~~~ 210 (753)
|++ .+|+.+++|+||+|||||+|||++||+|.+.- .+ +.++.+.+++.++ ..+.
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~-~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGCF-GP-----------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcCC-CC-----------------CceeccccccCCcccccccCCCCC
Confidence 455 79999999999999999999999999998641 11 1122233333211 1223
Q ss_pred CCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEee
Q 044745 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITIS 289 (753)
Q Consensus 211 ~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~S 289 (753)
..+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++.. .+ ...+.+++++++|++++++|||||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~-~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGC-SGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecC-CCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 45667899999999999998642 22399999999999999886 44 778889999999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEE
Q 044745 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366 (753)
Q Consensus 290 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s 366 (753)
||.. ..+..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+++
T Consensus 132 ~g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------- 188 (312)
T cd07489 132 LGGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------- 188 (312)
T ss_pred CCcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------
Confidence 9987 2344577888888899999999999999987542 2244567788887532
Q ss_pred eccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccc
Q 044745 367 INSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVS 446 (753)
Q Consensus 367 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 446 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCC
Q 044745 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPL 526 (753)
Q Consensus 447 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~ 526 (753)
+.||+|||+. +...||||+|||.+++++++..
T Consensus 189 ----------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~ 220 (312)
T cd07489 189 ----------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA 220 (312)
T ss_pred ----------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC
Confidence 4589999987 7889999999999999988765
Q ss_pred CCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCCCCCCCCCCC------CCCccCCC
Q 044745 527 GAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH-PDWSPSAIKSAIMTTAWPMNSSKNKD------AEFAFGSG 599 (753)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~ls~~~ik~~L~~TA~~~~~~~~~~------~~~~~G~G 599 (753)
. +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+... ....+|+|
T Consensus 221 ~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G 289 (312)
T cd07489 221 G-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAG 289 (312)
T ss_pred C-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcc
Confidence 3 368999999999999999999999999 99999999999999999876643221 24789999
Q ss_pred CCCccccCCCCe
Q 044745 600 HINPVEAVNPGL 611 (753)
Q Consensus 600 ~in~~~Al~~gl 611 (753)
+||+.+|++..-
T Consensus 290 ~vn~~~a~~~~~ 301 (312)
T cd07489 290 LVNAYKALYATT 301 (312)
T ss_pred eeeHHHHhcCCc
Confidence 999999999543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=391.13 Aligned_cols=250 Identities=25% Similarity=0.319 Sum_probs=205.6
Q ss_pred cccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcch
Q 044745 143 ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTH 222 (753)
Q Consensus 143 ~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGTh 222 (753)
+|..+++|+||+|||||+|||++||+|.+..+.+. ..+.. ......|..+||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-----------------------~~~~~---~~~~~~~~~gHGT~ 55 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-----------------------FTYAA---AACQDGGASAHGTH 55 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-----------------------cCccc---cCCCCCCCCCcHHH
Confidence 79999999999999999999999999986422111 01100 11344577899999
Q ss_pred hhcccccCcccccccccccccceeecccccceeccccccCCC-CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCccc
Q 044745 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQD 301 (753)
Q Consensus 223 VAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~ 301 (753)
|||||+|+.. ..+.||||+|+|+.+|++.... +++..++++||+||+++|++|||||||..........
T Consensus 56 VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~ 125 (267)
T cd07476 56 VASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADP 125 (267)
T ss_pred HHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCH
Confidence 9999998742 1248999999999999987622 2557899999999999999999999997643334456
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEe
Q 044745 302 VIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381 (753)
Q Consensus 302 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~ 381 (753)
.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 126 ~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------------- 171 (267)
T cd07476 126 ILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------------------- 171 (267)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------------------
Confidence 7788888999999999999999998777777888999999985422
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhH
Q 044745 382 GMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNF 461 (753)
Q Consensus 382 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 461 (753)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccc
Q 044745 462 NSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKF 541 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 541 (753)
+.++.||+||+.. .||||+|||.+|+++.+.+ .|
T Consensus 172 ----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~ 205 (267)
T cd07476 172 ----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EV 205 (267)
T ss_pred ----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------Ce
Confidence 3456799999864 3889999999999987764 68
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCCCCCCCC
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPD----WSPSAIKSAIMTTAWPMNSSK 588 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~----ls~~~ik~~L~~TA~~~~~~~ 588 (753)
..++|||||||||||++|||+|++|. ++|++||++|++||+++...+
T Consensus 206 ~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 206 VRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 99999999999999999999999887 899999999999999987654
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=389.83 Aligned_cols=279 Identities=39% Similarity=0.581 Sum_probs=217.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCC------------CCCCCCCC
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDIS------------GNTARDIQ 217 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~------------~~~~~D~~ 217 (753)
|+||+|||||+|||++||+|.+..+ .+.++...++|..+... .....|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999985421 13344445555222111 11245689
Q ss_pred CCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCC
Q 044745 218 GHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLN 297 (753)
Q Consensus 218 gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~ 297 (753)
+|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 9999999999998643 22348999999999999998523478899999999999999999999999873 2
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc--cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST--VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
...+.+..+++++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------------- 185 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------------- 185 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------------
Confidence 2457788888899999999999999998765544 45678999999864110
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
.
T Consensus 186 ----------------------~--------------------------------------------------------- 186 (295)
T cd07474 186 ----------------------V--------------------------------------------------------- 186 (295)
T ss_pred ----------------------c---------------------------------------------------------
Confidence 0
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCC-CCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSR-GPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~-GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
........|+++ |++. ...+||||+|||.+|++++....
T Consensus 187 -------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~------- 226 (295)
T cd07474 187 -------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG------- 226 (295)
T ss_pred -------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------
Confidence 001233445555 4543 78899999999999999887631
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCC-CCCccCCCCCCcccc
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKD-AEFAFGSGHINPVEA 606 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~-~~~~~G~G~in~~~A 606 (753)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+... .+..+|+|+||+.+|
T Consensus 227 ----~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 ----TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred ----CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 46899999999999999999999999999999999999999999987754321 247899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=378.09 Aligned_cols=235 Identities=27% Similarity=0.393 Sum_probs=193.6
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|||||||||.+||+|.+.- +...++.. ....|..+|||||||||+|...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~------------------------~~~~~~~~-----~~~~~~~~HGT~vAgiia~~~~ 51 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV------------------------IARLFFAG-----PGAPAPSAHGTAVASLLAGAGA 51 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc------------------------cccccCCC-----CCCCCCCCCHHHHHHHHhCCCC
Confidence 789999999999999997541 11111111 1355789999999999999852
Q ss_pred cccccccccccceeecccccceeccccccCCC---CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPEL---GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFH 309 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~ 309 (753)
. . .|+||+|+|+.+|++.... .++..++++||+||++.|++|||||||.. ....++.++.+
T Consensus 52 ~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~ 115 (239)
T cd05561 52 Q----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAA 115 (239)
T ss_pred C----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHH
Confidence 1 1 7999999999999987621 26788999999999999999999999975 23567788889
Q ss_pred HhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCC
Q 044745 310 AMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRP 388 (753)
Q Consensus 310 a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~ 388 (753)
+.++|++||+||||+|... ..++...|++|+|++++.+
T Consensus 116 a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------------------------- 154 (239)
T cd05561 116 AAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------------------------- 154 (239)
T ss_pred HHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------------------------
Confidence 9999999999999999753 3456677899999875422
Q ss_pred CCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHH
Q 044745 389 CESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYL 468 (753)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 468 (753)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecccc
Q 044745 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTS 548 (753)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 548 (753)
+.++.||++|+.. ||.|||.+|+++.+.+ .|..++|||
T Consensus 155 ---------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS 192 (239)
T cd05561 155 ---------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTS 192 (239)
T ss_pred ---------------------CCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHH
Confidence 3457799999976 9999999999876553 689999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCC
Q 044745 549 MSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSG 599 (753)
Q Consensus 549 mAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 599 (753)
||||||||++|||+|++| ++++|||++|++||+++...+. +..||||
T Consensus 193 ~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 193 FAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 999999999999999999 9999999999999998877653 6789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=386.13 Aligned_cols=255 Identities=27% Similarity=0.394 Sum_probs=186.7
Q ss_pred CCcEEEEEecCCCCCCCCccCCCCCCCCcccccccc--------C---------CCccc---cCcceeeeeecCCC----
Q 044745 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACK--------G---------GRNFT---CNNKIIGARYYTTD---- 206 (753)
Q Consensus 151 ~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~--------~---------~~~f~---~n~kl~g~~~~~g~---- 206 (753)
++|+|||||||||++||+|++. .|....+ . |.+|. ..+++++...+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 3322111 1 12221 11112111111000
Q ss_pred -CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcE
Q 044745 207 -DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285 (753)
Q Consensus 207 -~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdV 285 (753)
+.+...+.+..+|||||||||++...++. | +.||||+|+|+.+|++.. ......++++||+||++.|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcE
Confidence 01223455789999999999999864321 2 389999999999999865 4467789999999999999999
Q ss_pred EEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc---c--------CCCCceEEeecccCccceeeeE
Q 044745 286 ITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST---V--------SVAPWLMSVAASNTDRLFVDKV 354 (753)
Q Consensus 286 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVga~~~~~~~~~~~ 354 (753)
||||||... ......+..++..+.++|+++|+||||+|...... + ...+++|+||++....
T Consensus 145 iN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------ 216 (291)
T cd07483 145 INMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------ 216 (291)
T ss_pred EEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC------
Confidence 999999762 22334567778888999999999999998643211 1 1235566666543210
Q ss_pred EeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEE
Q 044745 355 VLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGS 434 (753)
Q Consensus 355 ~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~ 434 (753)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceee
Q 044745 435 VSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA 514 (753)
Q Consensus 435 i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 514 (753)
....++.||++|+. +|||.|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 01246889999974 459999
Q ss_pred CCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 515 PGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 515 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999987653 6899999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=377.37 Aligned_cols=245 Identities=31% Similarity=0.378 Sum_probs=195.7
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||||||++||+|..... ..+.++.+.++|..+... ...|..+|||||||||+|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~--~~~~~~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNN--TNYTDDDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCC--CCCCCCCchhhhheeeeeCC
Confidence 79999999999999999952210 013466777777433211 13678999999999999984
Q ss_pred ccccccccccccceeecccccceeccccccCCC-C-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCC-----------
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-G-CAETAILGAFDDAIADGVDIITISLGGQNTLNF----------- 298 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~----------- 298 (753)
.+.+.||||+|+|+.+|+..... . .....++++++|+.+.+++|||||||.......
T Consensus 62 ----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~ 131 (261)
T cd07493 62 ----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG 131 (261)
T ss_pred ----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence 23359999999999999865411 1 456678999999999999999999998732111
Q ss_pred cccHHHHHHHHHhhCCcEEEEecCCCCCCC---CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFI---GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
....+.++++.+.++|+++|+||||+|... ...+...|++|+|||.+.+
T Consensus 132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 183 (261)
T cd07493 132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN---------------------------- 183 (261)
T ss_pred cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC----------------------------
Confidence 124577788889999999999999999773 4456678999999975322
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+.++.||++||+. ++++||||+|||.++++....
T Consensus 184 ----------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------- 217 (261)
T cd07493 184 ----------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------- 217 (261)
T ss_pred ----------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC----------
Confidence 3567899999986 899999999999999875433
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ---GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ---CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=377.28 Aligned_cols=247 Identities=32% Similarity=0.407 Sum_probs=195.5
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|||||+|||++||+|.+. |++..... +...+.+.+.......+.|..+|||||||||+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~--------~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g 64 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS--------ADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVG 64 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC--------cccccccccCCCCCCCCCCCCCchhhhhhheee
Confidence 89999999999999999999864 11111000 000011101111124567889999999999998
Q ss_pred CcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH------------CCCcEEEeecCCCCCCC
Q 044745 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA------------DGVDIITISLGGQNTLN 297 (753)
Q Consensus 230 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~gvdVIn~SlG~~~~~~ 297 (753)
... .+...||||+|+|+.+|++.. .++...+++++++++++ .+++|||||||....
T Consensus 65 ~~~---------~~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~-- 132 (264)
T cd07481 65 NDG---------DGQQIGVAPGARWIACRALDR-NGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG-- 132 (264)
T ss_pred cCC---------CCCceEECCCCeEEEEEeecC-CCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--
Confidence 752 222389999999999999987 66888899999999975 789999999998732
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC---ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
....+..++..+.++|++||+||||+|..... .+...|++|+||+++.+
T Consensus 133 -~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 184 (264)
T cd07481 133 -DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------------------------- 184 (264)
T ss_pred -CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------------------------
Confidence 33456667777889999999999999865432 45677899999975422
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+.++.||++||.. .+++||||+|||.+|+++.+.+
T Consensus 185 -----------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------- 219 (264)
T cd07481 185 -----------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------- 219 (264)
T ss_pred -----------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC--------
Confidence 4567899999987 7899999999999999988763
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD--WSPSAIKSAIMTTAW 582 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--ls~~~ik~~L~~TA~ 582 (753)
.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 220 -----~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 220 -----GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -----ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=386.61 Aligned_cols=221 Identities=28% Similarity=0.338 Sum_probs=166.9
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLG 291 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG 291 (753)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++...+ +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47889999999999998532 233499999999999999875223 34467999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHH-HhhCCcEEEEecCCCCCCCCCccC---CCCceEEeecccCccceeeeEEeCCCeEEeeEEe
Q 044745 292 GQNTLNFTQDVIAIGSFH-AMAKGVLTLHSAGNSGPFIGSTVS---VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSI 367 (753)
Q Consensus 292 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~ 367 (753)
.....+ ....+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||+.....+....
T Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y------------- 319 (412)
T cd04857 254 EATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY------------- 319 (412)
T ss_pred cCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc-------------
Confidence 873212 12234344443 457899999999999987666532 468999999864321000000
Q ss_pred ccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccc
Q 044745 368 NSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSS 447 (753)
Q Consensus 368 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 447 (753)
. +.
T Consensus 320 ------------------------------~--------------------------------------~~--------- 322 (412)
T cd04857 320 ------------------------------S--------------------------------------LR--------- 322 (412)
T ss_pred ------------------------------c--------------------------------------cc---------
Confidence 0 00
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCC
Q 044745 448 VVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLG 527 (753)
Q Consensus 448 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~ 527 (753)
....+.++.||||||+. +|.+||||+|||+.|.+.-....
T Consensus 323 --------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 323 --------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred --------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCC
Confidence 00125688999999997 99999999999999987522211
Q ss_pred CCCCCCCCcccccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCCC
Q 044745 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPM 584 (753)
Q Consensus 528 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~ls~~~ik~~L~~TA~~~ 584 (753)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 -----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 -----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 3689999999999999999999985 468999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=377.42 Aligned_cols=325 Identities=23% Similarity=0.298 Sum_probs=256.5
Q ss_pred cccCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCc------cc-------------eEEEEec---ceeeEEEEEeC
Q 044745 47 LNFLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSV------EN-------------VLVRSYK---RSFNGFAAKLT 104 (753)
Q Consensus 47 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~-------------~v~~~y~---~~~~g~s~~~~ 104 (753)
+..+.+|||.|++... .+..+.|.++++........ .. .+.+.|. .+|+|+.-.++
T Consensus 77 ~~~~~~YiV~f~~~~~--q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS--QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCcc--HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 5568999999996554 66677788888887751110 00 1444443 37888889999
Q ss_pred HHHHHHhhcCCCeEEEEeCceecccc--------CCCcccccccc------cccc----CCCCCCCcEEEEEecCCCCCC
Q 044745 105 DHERQKLASMEGVVSVFPSRTLQLHT--------TRSWDFMGLNQ------SITR----KRSVESDIIVGVIDSGIWPES 166 (753)
Q Consensus 105 ~~~~~~L~~~p~V~~v~~~~~~~~~~--------~~s~~~~g~~~------~~~~----~~~~G~GV~VaVIDtGid~~H 166 (753)
.+-+..++++|-++.++++..+.... ...|.+..+.. ..|. ....|+||...|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988766443 22233222221 1122 234899999999999999999
Q ss_pred CCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCccccccccccccccee
Q 044745 167 ESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTAR 246 (753)
Q Consensus 167 p~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~ 246 (753)
|+|.++ ++|-. | ...+ ....|++||||||||+|++.. .
T Consensus 235 ~dFegR------a~wGa-~----------------i~~~-----~~~~D~nGHGTH~AG~I~sKt--------------~ 272 (501)
T KOG1153|consen 235 PDFEGR------AIWGA-T----------------IPPK-----DGDEDCNGHGTHVAGLIGSKT--------------F 272 (501)
T ss_pred cccccc------eeccc-c----------------cCCC-----CcccccCCCcceeeeeeeccc--------------c
Confidence 999976 34411 1 1101 234689999999999999986 8
Q ss_pred ecccccceeccccccCCCC-CCHHHHHHHHHHHHHC---------CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcE
Q 044745 247 GGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD---------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVL 316 (753)
Q Consensus 247 GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~---------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~ 316 (753)
|||.+++|+++||+++ +| +..+++++++|++++. +..|.|||+|+. ..-.+..|+++|.+.|++
T Consensus 273 GvAK~s~lvaVKVl~~-dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~ 346 (501)
T KOG1153|consen 273 GVAKNSNLVAVKVLRS-DGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIH 346 (501)
T ss_pred ccccccceEEEEEecc-CCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeE
Confidence 9999999999999999 66 9999999999999986 468999999998 334778888999999999
Q ss_pred EEEecCCCCCCCCCc-cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCC
Q 044745 317 TLHSAGNSGPFIGST-VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDP 395 (753)
Q Consensus 317 vV~AAGN~G~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 395 (753)
+++||||+..+.+.. +..+..+|||||++..
T Consensus 347 fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------------------------ 378 (501)
T KOG1153|consen 347 FAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------------------------ 378 (501)
T ss_pred EEEcCCCcchhhhccCcccccccEEecccccc------------------------------------------------
Confidence 999999999887655 4578899999997533
Q ss_pred CCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCe
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPE 475 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 475 (753)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHH
Q 044745 476 ANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAA 555 (753)
Q Consensus 476 ~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 555 (753)
+.+|.|||||+|+ ||.|||++|+|+|.++. ....++||||||+||||
T Consensus 379 --------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhva 425 (501)
T KOG1153|consen 379 --------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVA 425 (501)
T ss_pred --------------cchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchh
Confidence 6789999999999 99999999999998874 46789999999999999
Q ss_pred HHHHHHHhhCCC---------CCHHHHHHHHHhcCC
Q 044745 556 GVAAYVKSFHPD---------WSPSAIKSAIMTTAW 582 (753)
Q Consensus 556 G~aALl~~~~P~---------ls~~~ik~~L~~TA~ 582 (753)
|++|..++++|. .||.++|..++.-..
T Consensus 426 G~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 426 GLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999883 388999888876554
|
|
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.94 Aligned_cols=257 Identities=28% Similarity=0.439 Sum_probs=205.9
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccccc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASG 229 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag 229 (753)
|+||+|+|||+||+++||+|.+.... ...+...........|..+|||||||+|+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence 89999999999999999999864210 111111001224566788999999999999
Q ss_pred CcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC----CCcEEEeecCCCCCCCCcccHHH
Q 044745 230 NEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD----GVDIITISLGGQNTLNFTQDVIA 304 (753)
Q Consensus 230 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~ 304 (753)
...+. .+.+.||||+|+|+.+|+++. .+ ...+++++||+|+++. +++|||||||.........+.+.
T Consensus 57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~-~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~ 128 (264)
T cd07487 57 SGRAS-------NGKYKGVAPGANLVGVKVLDD-SGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC 128 (264)
T ss_pred CCccc-------CCceEEECCCCeEEEEEeecC-CCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHH
Confidence 86431 233599999999999999987 55 7788999999999998 99999999998854455678889
Q ss_pred HHHHHHhhCCcEEEEecCCCCCCCC--CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeC
Q 044745 305 IGSFHAMAKGVLTLHSAGNSGPFIG--STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDG 382 (753)
Q Consensus 305 ~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~ 382 (753)
.+++++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 129 ~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------- 175 (264)
T cd07487 129 QAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------- 175 (264)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------
Confidence 9999999999999999999998765 45567899999998654310
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHH
Q 044745 383 MDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFN 462 (753)
Q Consensus 383 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 462 (753)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccce
Q 044745 463 SIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFN 542 (753)
Q Consensus 463 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 542 (753)
....++.||++||+. ++++||||+|||.+|+++.+.... ........|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----PGAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccc----cCCCCCCceE
Confidence 002367899999987 899999999999999998654311 0112235789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 543 VVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=371.04 Aligned_cols=263 Identities=27% Similarity=0.345 Sum_probs=200.5
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecC-CCCCCCCCCCCCCCCc
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT-TDDISGNTARDIQGHG 220 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~-g~~~~~~~~~D~~gHG 220 (753)
.+|..+++|+||+|+|||||||++||+|.+..... +.. .....+.+. ..........|..+||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~gHG 64 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-----------GYD-----PAVNGYNFVPNVGDIDNDVSVGGGHG 64 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-----------Ccc-----cccCCcccccccCCcCCCCCCCCCCH
Confidence 47999999999999999999999999999751110 000 000000110 0001123455788999
Q ss_pred chhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcc
Q 044745 221 THTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQ 300 (753)
Q Consensus 221 ThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~ 300 (753)
|||||||+|...+....-|.. .+.|+||+|+|+.+|++.....+....++++|+|+++.|++|||||||... .....
T Consensus 65 T~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~ 141 (273)
T cd07485 65 THVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS 141 (273)
T ss_pred HHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence 999999999764322211111 236799999999999998733377888999999999999999999999873 23344
Q ss_pred cHHHHHHHHHhhC-------CcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCC
Q 044745 301 DVIAIGSFHAMAK-------GVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSK 373 (753)
Q Consensus 301 ~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 373 (753)
..+..++..+.++ |++||+||||+|......+...|++|+||+++.+
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~-------------------------- 195 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN-------------------------- 195 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC--------------------------
Confidence 5667777777777 9999999999998877667788999999985432
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccE
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPA 453 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 453 (753)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc-cEEeccCCCCCCCCC
Q 044745 454 VALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV-DILAAFSPLGAVSDD 532 (753)
Q Consensus 454 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~ 532 (753)
+.++.||++|+.. ||.|||. .|+++.+....
T Consensus 196 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 196 ------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ------------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 4467899999987 9999999 88887765421
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD-WSPSAIKSAIMTT 580 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-ls~~~ik~~L~~T 580 (753)
.....|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11247899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=366.24 Aligned_cols=256 Identities=24% Similarity=0.331 Sum_probs=189.0
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|+++++|+||+||||||||+..|| |...++.. + ..+... ......
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~-------------------~----~~~~~~--~~~~~~ 58 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQV-------------------R----VVLAPG--ATDPAC 58 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccc-------------------e----eecCCC--CCCCCC
Confidence 356777 89999999999999999999999998 76442210 0 001100 113456
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|+.|||||||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||...
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 7889999999865 78999999999999754 4567899999999999999999999863
Q ss_pred CCCC---------cccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeE
Q 044745 295 TLNF---------TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGY 365 (753)
Q Consensus 295 ~~~~---------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~ 365 (753)
.... ....++.++.+|.++|++||+||||++. .++...|++|+||+++.+.. +
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g------ 178 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G------ 178 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C------
Confidence 2111 1345778888899999999999999974 46888999999999754320 0
Q ss_pred EeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccc
Q 044745 366 SINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKV 445 (753)
Q Consensus 366 s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 445 (753)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceeccc--CCCCCCCCCCCCCCce-----------
Q 044745 446 SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFS--SRGPNEIVPDILKPDI----------- 512 (753)
Q Consensus 446 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS--s~GP~~~~~~~~KPDI----------- 512 (753)
.....++ ++... ..+++.|||+
T Consensus 179 --------------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~ 213 (298)
T cd07494 179 --------------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAA 213 (298)
T ss_pred --------------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCccc
Confidence 0000111 11111 1256677776
Q ss_pred -----eeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 513 -----SAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 513 -----~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++||+++...
T Consensus 214 ~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 214 YLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred ccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 4799998765432100 011125799999999999999999999999999999999999999999988664
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=361.23 Aligned_cols=232 Identities=32% Similarity=0.441 Sum_probs=195.6
Q ss_pred cccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcch
Q 044745 143 ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTH 222 (753)
Q Consensus 143 ~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGTh 222 (753)
.|..+++|+||+|||||+||+++||+|.++ +...+.+... ....|..+||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~----~~~~d~~~HGT~ 68 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG----DPDSDCNGHGTH 68 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC----CCCCCCCccHHH
Confidence 677789999999999999999999999853 2222333221 225678999999
Q ss_pred hhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC-----CCcEEEeecCCCCCC
Q 044745 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD-----GVDIITISLGGQNTL 296 (753)
Q Consensus 223 VAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-----gvdVIn~SlG~~~~~ 296 (753)
|||||++.. .||||+|+|+.+|+++. .+ ...+.++++++++++. +++|||||||...
T Consensus 69 vAgiia~~~--------------~GvAp~a~i~~~~i~~~-~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-- 131 (255)
T cd04077 69 VAGTVGGKT--------------YGVAKKANLVAVKVLDC-NGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-- 131 (255)
T ss_pred HHHHHHccc--------------cCcCCCCeEEEEEEeCC-CCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--
Confidence 999999874 79999999999999988 54 7788999999999987 4899999999872
Q ss_pred CCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 297 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.+
T Consensus 132 ---~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~---------------------------- 180 (255)
T cd04077 132 ---STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD---------------------------- 180 (255)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC----------------------------
Confidence 45677778889999999999999999765 3456678999999986532
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+..+.||++||+. ||+|||.+|.++.....
T Consensus 181 ----------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------- 210 (255)
T cd04077 181 ----------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------- 210 (255)
T ss_pred ----------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCCC--------
Confidence 3467899999987 99999999998876432
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP 583 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~ 583 (753)
..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 211 ---~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 ---TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ---CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 478999999999999999999999999999999999999999975
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=361.68 Aligned_cols=246 Identities=30% Similarity=0.367 Sum_probs=204.7
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
..++++ .+|..+ +|+||+|+|||+||+++||+|... ++...+++... ...+.
T Consensus 14 ~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~---~~~~~ 65 (260)
T cd07484 14 DQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN---DSDAM 65 (260)
T ss_pred cccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC---CCCCC
Confidence 345666 899988 999999999999999999998532 23333344221 13366
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|..+|||||||||++...+ ...+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||...
T Consensus 66 d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 66 DDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 7899999999999987532 12248999999999999998723378889999999999999999999999873
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 138 ----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------- 186 (260)
T cd07484 138 ----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------------------- 186 (260)
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------------------
Confidence 3456777778888999999999999999888888899999999985432
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+..+.||++|+.. |++|||.+|++..+..
T Consensus 187 -----------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------- 215 (260)
T cd07484 187 -----------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------- 215 (260)
T ss_pred -----------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC--------
Confidence 3456789999876 9999999999887653
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPM 584 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~ 584 (753)
.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 216 -----~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 -----DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 689999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=359.48 Aligned_cols=252 Identities=29% Similarity=0.401 Sum_probs=189.3
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC-CCCCCCCCCCCCCcchhhcccccC
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD-DISGNTARDIQGHGTHTASTASGN 230 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~-~~~~~~~~D~~gHGThVAGiiag~ 230 (753)
||+|||||+|||++||+|.+. +....+|..+ ........|..+|||||||||+|+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 56 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG 56 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 799999999999999999854 1111222111 112234567889999999999998
Q ss_pred cccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 231 EVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 231 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
.. ++.+.||||+|+|+.+|++.. .++..++++++|+|+++.+++|||||||..... .+.+..+++.+
T Consensus 57 ~~---------~~~~~GvAp~a~i~~~~v~~~-~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~ 123 (254)
T cd07490 57 GA---------KGVYIGVAPEADLLHGKVLDD-GGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEAL 123 (254)
T ss_pred CC---------CCCEEEECCCCEEEEEEEecC-CCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHH
Confidence 63 233489999999999999987 558889999999999999999999999987322 56666666555
Q ss_pred hh-CCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCC
Q 044745 311 MA-KGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPC 389 (753)
Q Consensus 311 ~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~ 389 (753)
.+ +|++||+||||+|......+...|++|+|||++.+.........
T Consensus 124 ~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~--------------------------------- 170 (254)
T cd07490 124 SNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF--------------------------------- 170 (254)
T ss_pred HHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC---------------------------------
Confidence 54 69999999999998877777788999999997644210000000
Q ss_pred CCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHh
Q 044745 390 ESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469 (753)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 469 (753)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccc
Q 044745 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549 (753)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 549 (753)
........+.+|.. .....|||+.|||.+|+++.... .....|..++||||
T Consensus 171 -------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~ 221 (254)
T cd07490 171 -------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSM 221 (254)
T ss_pred -------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHH
Confidence 00111223334432 35678999999999999865221 11247899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 550 AaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|||+|||++|||+|++|+|++.+||++|++||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=370.16 Aligned_cols=263 Identities=25% Similarity=0.254 Sum_probs=187.5
Q ss_pred EEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCccc
Q 044745 154 IVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVK 233 (753)
Q Consensus 154 ~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~ 233 (753)
+|||||||||.+||+|.+. +.....+... .....|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~---~~~~~d~~gHGT~vAgiia~~~~~ 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE---PGWTADDLGHGTAVAGLALYGDLT 54 (291)
T ss_pred EEEEecCCCCCCChhhhhh------------------------hccccccccC---CCCcCCCCCChHHHHHHHHcCccc
Confidence 7999999999999999853 1111111110 011578999999999999976432
Q ss_pred ccccccccccceeecccccceeccccccCCCC-----CCHHHHHHHHHHHHHCC---CcEEEeecCCCCCCCCc-ccHHH
Q 044745 234 DASFFGVGQGTARGGVPSARIAAYKVCSPELG-----CAETAILGAFDDAIADG---VDIITISLGGQNTLNFT-QDVIA 304 (753)
Q Consensus 234 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~~g---vdVIn~SlG~~~~~~~~-~~~~~ 304 (753)
.....|+||+|+|+.+|++.. .| ....++++||+|+++.+ ++|||||||........ ...+.
T Consensus 55 --------~~~~~gvap~~~l~~~kv~~~-~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~ 125 (291)
T cd04847 55 --------LPGNGLPRPGCRLESVRVLPP-NGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWA 125 (291)
T ss_pred --------CCCCCCcccceEEEEEEEcCC-CCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHH
Confidence 122389999999999999988 42 56778999999999853 49999999987322211 12455
Q ss_pred HHHHH-HhhCCcEEEEecCCCCCCCCCc------------cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCC
Q 044745 305 IGSFH-AMAKGVLTLHSAGNSGPFIGST------------VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFS 371 (753)
Q Consensus 305 ~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 371 (753)
.++++ +.++|++||+||||+|...... +...+++|+|||++.+.......
T Consensus 126 ~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----------------- 188 (291)
T cd04847 126 AALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----------------- 188 (291)
T ss_pred HHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----------------
Confidence 55544 5689999999999999876432 34568999999977552110000
Q ss_pred CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccc
Q 044745 372 SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSL 451 (753)
Q Consensus 372 ~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 451 (753)
.+.
T Consensus 189 -----------------------------------------------------------------~~~------------ 191 (291)
T cd04847 189 -----------------------------------------------------------------RYS------------ 191 (291)
T ss_pred -----------------------------------------------------------------ccc------------
Confidence 000
Q ss_pred cEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCC-
Q 044745 452 PAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS- 530 (753)
Q Consensus 452 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~- 530 (753)
.......+.||+|||.. ++.+||||+|||++|.+..+......
T Consensus 192 ----------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~ 235 (291)
T cd04847 192 ----------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGD 235 (291)
T ss_pred ----------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCc
Confidence 00001233499999987 99999999999999987654321000
Q ss_pred ----CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 531 ----DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 531 ----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 236 LSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 0001112357999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=360.73 Aligned_cols=255 Identities=26% Similarity=0.370 Sum_probs=190.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCc-----------ceeeeeec-CC-----CCCCCCCCC
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNN-----------KIIGARYY-TT-----DDISGNTAR 214 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~-----------kl~g~~~~-~g-----~~~~~~~~~ 214 (753)
||+|||||||||++||+|.+.-. .+++|..+. +...-.++ .+ .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~------------~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL------------PGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc------------cCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 79999999999999999986521 111110000 00000000 00 001123345
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH----------HCCCc
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI----------ADGVD 284 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~gvd 284 (753)
+..+|||||||||+|...++ . .+.||||+|+|+.+|+++. .+...+++++|++|++ .++++
T Consensus 69 ~~~~HGT~vAgiiaa~~~~~---~-----~~~GvAp~a~i~~~~v~~~-~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNNG---V-----GVAGVAWGARILPVRVLGK-CGGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCHHHHHHHHhCcCCCC---C-----CceeecCCCeEEEEEEecC-CCCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 67899999999999986421 1 2389999999999999987 5668899999999998 45789
Q ss_pred EEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEe
Q 044745 285 IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLV 363 (753)
Q Consensus 285 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 363 (753)
|||||||.... ....+..++..+.++|++||+||||+|... ...+...|++|+||+++.+
T Consensus 140 Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 200 (285)
T cd07496 140 VINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------- 200 (285)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------
Confidence 99999998732 145677888889999999999999999876 4566678899999985432
Q ss_pred eEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcc
Q 044745 364 GYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFN 443 (753)
Q Consensus 364 g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 443 (753)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEecc
Q 044745 444 KVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523 (753)
Q Consensus 444 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 523 (753)
+.++.||++||.. ||.|||.+|.+..
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 4567899999987 9999999999887
Q ss_pred CCCCCCC--CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 524 SPLGAVS--DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 524 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
....... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 6542110 00111223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=361.40 Aligned_cols=277 Identities=28% Similarity=0.363 Sum_probs=201.6
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhc
Q 044745 146 KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 146 ~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAG 225 (753)
++++|+||+|||||+|||++||+|.+... .+..+ .++++.....+.. ...|..+|||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~-~~~~~~~~~~~~~------~~~d~~~HGT~vAg 62 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL-FHRKIVRYDSLSD------TKDDVDGHGTHVAG 62 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc-CcccEEEeeccCC------CCCCCCCCcchhhe
Confidence 57899999999999999999999986421 11111 2344444443322 12278999999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHH
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVI 303 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~ 303 (753)
||+|...+... ...+.||||+|+|+.+|+++. .+ ....++..+++++.+.+++|||||||..... .....
T Consensus 63 iia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~ 134 (293)
T cd04842 63 IIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDT-SGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLL 134 (293)
T ss_pred eeccCCcCCCc-----ccccccccccCeEEEEEeecc-CccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchH
Confidence 99998643221 113499999999999999887 43 5667788999999999999999999988321 12333
Q ss_pred HHHHHHHh-h-CCcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceee
Q 044745 304 AIGSFHAM-A-KGVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFP 378 (753)
Q Consensus 304 ~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 378 (753)
..++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 135 ~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~--------------------------- 187 (293)
T cd04842 135 ARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN--------------------------- 187 (293)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc---------------------------
Confidence 33444433 3 89999999999998765 5566889999999976542100
Q ss_pred EEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeeh
Q 044745 379 LVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNE 458 (753)
Q Consensus 379 lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 458 (753)
...|..
T Consensus 188 ----------------~~~~~~---------------------------------------------------------- 193 (293)
T cd04842 188 ----------------GEGGLG---------------------------------------------------------- 193 (293)
T ss_pred ----------------cccccc----------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCccc
Q 044745 459 DNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQ 538 (753)
Q Consensus 459 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 538 (753)
.......++.||++||+. ++++||||+|||.+|+++..... .......
T Consensus 194 --------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~ 241 (293)
T cd04842 194 --------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSD 241 (293)
T ss_pred --------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCCh
Confidence 001125688999999987 89999999999999999875530 0011122
Q ss_pred ccceeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCC
Q 044745 539 AKFNVVSGTSMSCPHAAGVAAYVKSFH-----P---DWSPSAIKSAIMTTAW 582 (753)
Q Consensus 539 ~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~ls~~~ik~~L~~TA~ 582 (753)
..|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 242 ~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 242 SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 578999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=361.72 Aligned_cols=263 Identities=27% Similarity=0.302 Sum_probs=185.2
Q ss_pred cCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhh
Q 044745 145 RKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTA 224 (753)
Q Consensus 145 ~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVA 224 (753)
..+++|+||+|||||+|||++||+|.+.. +...+|.+. ..+.|..+||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~~----~~~~d~~gHGT~VA 53 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVGG----EDVQDGHGHGTHCA 53 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCCC----CCCCCCCCcHHHHH
Confidence 45789999999999999999999998541 112233221 23567899999999
Q ss_pred cccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCC---------
Q 044745 225 STASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNT--------- 295 (753)
Q Consensus 225 Giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~--------- 295 (753)
|||+|+..+ +...||||+|+|+.+|++.....+....++++|+||++.|++|||||||....
T Consensus 54 giiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 124 (297)
T cd07480 54 GTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP 124 (297)
T ss_pred HHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence 999998632 33379999999999999876344777789999999999999999999998631
Q ss_pred CCCcccHHHHHHHHH---------------hhCCcEEEEecCCCCCCCCCccC-----CCCceEEeecccCccceeeeEE
Q 044745 296 LNFTQDVIAIGSFHA---------------MAKGVLTLHSAGNSGPFIGSTVS-----VAPWLMSVAASNTDRLFVDKVV 355 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~p~vitVga~~~~~~~~~~~~ 355 (753)
.......++.....+ .++|++||+||||+|........ ..+++++|++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~-------- 196 (297)
T cd07480 125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL-------- 196 (297)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC--------
Confidence 111122233333333 68999999999999865432211 11233333332111
Q ss_pred eCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEE
Q 044745 356 LGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSV 435 (753)
Q Consensus 356 ~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i 435 (753)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeC
Q 044745 436 SLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAP 515 (753)
Q Consensus 436 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~AP 515 (753)
+....|+++.+ ....||||.||
T Consensus 197 ------------------------------------------------------~~~~~~~~~~~----~~~~~~dv~Ap 218 (297)
T cd07480 197 ------------------------------------------------------GRTGNFSAVAN----FSNGEVDIAAP 218 (297)
T ss_pred ------------------------------------------------------CCCCCccccCC----CCCCceEEEeC
Confidence 11222333322 23457899999
Q ss_pred CccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc----CCCCCCCCCCC
Q 044745 516 GVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT----AWPMNSSKNKD 591 (753)
Q Consensus 516 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T----A~~~~~~~~~~ 591 (753)
|.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.. +..-.....
T Consensus 219 G~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~-- 283 (297)
T cd07480 219 GVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGL-- 283 (297)
T ss_pred CCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCC--
Confidence 99999887654 79999999999999999999999999999988888777732 221111111
Q ss_pred CCCccCCCCCCccc
Q 044745 592 AEFAFGSGHINPVE 605 (753)
Q Consensus 592 ~~~~~G~G~in~~~ 605 (753)
...++|+|++++.+
T Consensus 284 ~~~~~g~G~~~~~~ 297 (297)
T cd07480 284 DLPDRGVGLGLAPA 297 (297)
T ss_pred ChhhcCCceeecCC
Confidence 36789999998753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=351.57 Aligned_cols=241 Identities=27% Similarity=0.406 Sum_probs=191.3
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|||||+|||++||+|.+.. ++...+.+... .....|..+|||||||||+|+..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~---~~~~~~~~~HGT~vAgiiag~~~ 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP----------------------KLVPGWNFVSN---NDPTSDIDGHGTACAGVAAAVGN 55 (242)
T ss_pred CEEEEecCCCCCCChhhccCc----------------------CccCCccccCC---CCCCCCCCCCHHHHHHHHHhccC
Confidence 789999999999999998630 11111122111 12456789999999999999853
Q ss_pred cccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhh
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMA 312 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~ 312 (753)
+ ...+.|+||+|+|+.+|++.....+..+++.++++|+++.+++|||||||...........+..++..+.+
T Consensus 56 ~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 56 N--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred C--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 2 12248999999999999998722377889999999999999999999999874444456677778888888
Q ss_pred -CCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCC
Q 044745 313 -KGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCES 391 (753)
Q Consensus 313 -~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~ 391 (753)
+|+++|+||||+|......+...|++|+||+++.+
T Consensus 128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------------- 163 (242)
T cd07498 128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------------------------- 163 (242)
T ss_pred cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------------------------
Confidence 99999999999998876677788999999986532
Q ss_pred CCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcC
Q 044745 392 DFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKST 471 (753)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 471 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchh
Q 044745 472 KKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551 (753)
Q Consensus 472 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 551 (753)
+.++.||++||.. |++|||.++......... ........|..++||||||
T Consensus 164 ------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~Aa 213 (242)
T cd07498 164 ------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSFAS 213 (242)
T ss_pred ------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHHHH
Confidence 3467899999987 999999999887544211 0112235788999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 552 P~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
|+|||++|||+|++|+|+++|||++|++|
T Consensus 214 p~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 214 PVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=351.30 Aligned_cols=247 Identities=19% Similarity=0.148 Sum_probs=178.5
Q ss_pred ccccccccCCC-CCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 138 GLNQSITRKRS-VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 138 g~~~~~~~~~~-~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
+++ .+|+... .|+||+|+|||+|||.+||+|.++.... +.+ ..+.|+
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~~~-----~~~~d~ 50 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------ISG-----LTDQAD 50 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------cCC-----CCCCCC
Confidence 455 7898744 5999999999999999999998642100 000 125678
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH----CCCcEEEeecCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA----DGVDIITISLGG 292 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~gvdVIn~SlG~ 292 (753)
.+|||||||||+|..+ .+| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||||.
T Consensus 51 ~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~ 115 (277)
T cd04843 51 SDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGG 115 (277)
T ss_pred CCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccC
Confidence 9999999999998741 122 38999999999999964 2345666666666 356788999998
Q ss_pred CCCCC-----CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCcc-------------CCCCceEEeecccCccceeeeE
Q 044745 293 QNTLN-----FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTV-------------SVAPWLMSVAASNTDRLFVDKV 354 (753)
Q Consensus 293 ~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vitVga~~~~~~~~~~~ 354 (753)
..... .....+..++.++.++|++||+||||++....... ...|++|+|||++.+.
T Consensus 116 ~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~------ 189 (277)
T cd04843 116 PNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT------ 189 (277)
T ss_pred CCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC------
Confidence 63211 12334556777888999999999999986532111 1235677777654220
Q ss_pred EeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEE
Q 044745 355 VLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGS 434 (753)
Q Consensus 355 ~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~ 434 (753)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceee
Q 044745 435 VSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA 514 (753)
Q Consensus 435 i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A 514 (753)
...++.||++||.. ||.|
T Consensus 190 ------------------------------------------------------~~~~~~fSn~G~~v--------di~A 207 (277)
T cd04843 190 ------------------------------------------------------GHTRLAFSNYGSRV--------DVYG 207 (277)
T ss_pred ------------------------------------------------------CCccccccCCCCcc--------ceEc
Confidence 02378899999987 9999
Q ss_pred CCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhcCC
Q 044745 515 PGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS----F-HPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 515 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~ls~~~ik~~L~~TA~ 582 (753)
||++|+++....... ........|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 208 PG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 208 WGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999998764311 0011113457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=348.20 Aligned_cols=249 Identities=29% Similarity=0.388 Sum_probs=191.2
Q ss_pred CCcEEEEEecCCCCCCCCccCCCCCCCCccccc---cccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhccc
Q 044745 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKG---ACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 151 ~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g---~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGii 227 (753)
+||+|||||||||++||+|.+. .|.. .+..+.+...+..+...+.+.- .....++.|..+|||||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~HGT~va~ii 73 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGWNF-VNNDNDPMDDNGHGTHVAGII 73 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCcccc-cCCCCCCCCCCCcHHHHHHHH
Confidence 6999999999999999999975 2321 1221211111111111011100 112355678999999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHH
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIG 306 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a 306 (753)
+|...++ ..+.|+||+|+|+.+|++.. .+ +...+++++++++++.+++|||+|||.... ...+..+
T Consensus 74 ~~~~~~~--------~~~~GvAp~a~l~~~~~~~~-~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~ 140 (259)
T cd07473 74 GAVGNNG--------IGIAGVAWNVKIMPLKFLGA-DGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDA 140 (259)
T ss_pred HCcCCCC--------CceEEeCCCCEEEEEEEeCC-CCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHH
Confidence 9986432 22489999999999999987 55 888999999999999999999999998732 5677778
Q ss_pred HHHHhhCCcEEEEecCCCCCCC---CCccC--CCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEe
Q 044745 307 SFHAMAKGVLTLHSAGNSGPFI---GSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381 (753)
Q Consensus 307 ~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~ 381 (753)
+.++.++|+++|+||||+|... ..++. ..|++|+||+.+.+
T Consensus 141 ~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~---------------------------------- 186 (259)
T cd07473 141 IARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN---------------------------------- 186 (259)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC----------------------------------
Confidence 8889999999999999998763 22332 35788888875422
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhH
Q 044745 382 GMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNF 461 (753)
Q Consensus 382 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 461 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccc
Q 044745 462 NSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKF 541 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 541 (753)
+.++.||++||. +||+.|||.++++..+. ..|
T Consensus 187 ----------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~ 218 (259)
T cd07473 187 ----------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGY 218 (259)
T ss_pred ----------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcE
Confidence 345669999985 46999999999986654 368
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 542 NVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 219 ~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=340.33 Aligned_cols=226 Identities=35% Similarity=0.500 Sum_probs=187.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||+||+++||+|.+. +....+|..... ....|..+|||||||+|++..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~~--~~~~~~~~HGT~vA~ii~~~~ 54 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDDN--NDYQDGNGHGTHVAGIIAALD 54 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCCC--CCCCCCCCCHHHHHHHHhccc
Confidence 799999999999999999854 122223321110 345678899999999999985
Q ss_pred ccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
.. ..+.|+||+|+|+.+|+++. .+ +...+++++++++++.|++|||||||... ....+..++..+
T Consensus 55 ~~---------~~~~giap~a~i~~~~~~~~-~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a 120 (229)
T cd07477 55 NG---------VGVVGVAPEADLYAVKVLND-DGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKA 120 (229)
T ss_pred CC---------CccEeeCCCCEEEEEEEECC-CCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHH
Confidence 32 13489999999999999987 44 67789999999999999999999999872 234566677788
Q ss_pred hhCCcEEEEecCCCCCCCCCc--cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCC
Q 044745 311 MAKGVLTLHSAGNSGPFIGST--VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRP 388 (753)
Q Consensus 311 ~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~ 388 (753)
.++|+++|+||||++...... +...|++|+||+++.+
T Consensus 121 ~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------------------- 159 (229)
T cd07477 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------------------- 159 (229)
T ss_pred HHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------------------
Confidence 899999999999999876554 7788999999986533
Q ss_pred CCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHH
Q 044745 389 CESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYL 468 (753)
Q Consensus 389 ~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 468 (753)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecccc
Q 044745 469 KSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTS 548 (753)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 548 (753)
+.+..||++|+.. |+.|||.+|+++++.. .|..++|||
T Consensus 160 ---------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS 197 (229)
T cd07477 160 ---------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTS 197 (229)
T ss_pred ---------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHH
Confidence 3456799999976 9999999999987764 688999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 549 MSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 549 mAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
||||+|||++|||+|++|++++.+||++|++|
T Consensus 198 ~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=358.91 Aligned_cols=275 Identities=31% Similarity=0.473 Sum_probs=210.9
Q ss_pred EEEEEecCCCCCCCCcc-CCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 154 IVGVIDSGIWPESESFS-DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 154 ~VaVIDtGid~~Hp~f~-d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
+|||||||||++||+|. .. + ...++.+.+.|.+.........|..+|||||||+|+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-c------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 32 1 012333455554332233556788999999999999986
Q ss_pred cccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH-HCCCcEEEeecCCCC--CCCCcccHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI-ADGVDIITISLGGQN--TLNFTQDVIAIGSFH 309 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~gvdVIn~SlG~~~--~~~~~~~~~~~a~~~ 309 (753)
. .+ .....|+||+|+|+.+|++.. .+....+++++|++++ +.+++|||||||... ......+.+..+.+.
T Consensus 61 ~-~~-----~~~~~Gva~~a~l~~~~i~~~-~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 133 (282)
T PF00082_consen 61 G-NN-----GPGINGVAPNAKLYSYKIFDN-SGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDY 133 (282)
T ss_dssp S-SS-----SSSETCSSTTSEEEEEECSST-TSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHH
T ss_pred c-cc-----ccccccccccccccccccccc-cccccccccchhhhhhhccCCcccccccccccccccccccccccccccc
Confidence 2 21 222399999999999999877 5578888999999999 899999999999831 112233445666778
Q ss_pred HhhCCcEEEEecCCCCCCCCC---ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCC
Q 044745 310 AMAKGVLTLHSAGNSGPFIGS---TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS 386 (753)
Q Consensus 310 a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~ 386 (753)
+.++|+++|+||||+|..... .+...+++|+||+++.+
T Consensus 134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------------- 174 (282)
T PF00082_consen 134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------------- 174 (282)
T ss_dssp HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------------
T ss_pred ccccCcceeeccccccccccccccccccccccccccccccc---------------------------------------
Confidence 889999999999999876643 44556888999875422
Q ss_pred CCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHH
Q 044745 387 RPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 387 ~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 466 (753)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeecc
Q 044745 467 YLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSG 546 (753)
Q Consensus 467 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 546 (753)
+.++.||++|+.. .++++||||+|||.++++.++... ...|..++|
T Consensus 175 -----------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp -----------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred -----------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCc
Confidence 3457899997653 488999999999999988886541 035788999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 547 TSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 547 TSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
||||||+|||++|||+|++|+|++++||.+|++||.++........+..||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999998832211136788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=342.49 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=119.3
Q ss_pred CCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC----CCCCCCCCCCCCcchhhc
Q 044745 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD----ISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 150 G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~----~~~~~~~D~~gHGThVAG 225 (753)
+++|+|||||||||++||+|.++ +...+.|..+. .......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999853 11222231110 011223578999999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCC------CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCC--C
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL------GCAETAILGAFDDAIADGVDIITISLGGQNTL--N 297 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~--~ 297 (753)
|| .|+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 58 iI------------------~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MI------------------CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HH------------------HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 99 3679999999999987622 24677899999999999999999999987311 1
Q ss_pred CcccHHHHHHHHHhhCCcEEEEecCCCCCCCC-Cc--cCCCCceEEeecccCc
Q 044745 298 FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-ST--VSVAPWLMSVAASNTD 347 (753)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVga~~~~ 347 (753)
.....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~ 172 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED 172 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC
Confidence 13567888888999999999999999998754 22 3467899999986543
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=350.40 Aligned_cols=251 Identities=19% Similarity=0.191 Sum_probs=182.8
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCC--C
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTA--R 214 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~--~ 214 (753)
++++ .+|+.+++|+||+|+|||||||++||+|.+.-.. ...++|.....+ ..+ .
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------------------~~~~~~~~~~~~-~~~~~~ 81 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------------------EASYDFNDNDPD-PTPRYD 81 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------------------cccccccCCCCC-CCCccc
Confidence 4555 8999999999999999999999999999864110 011222111111 122 2
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|..+|||||||||+|...+.. ...||||+|+|+.+|++.. . .....+..++.++.+ .++|||||||...
T Consensus 82 ~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~ 150 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDG-D-VTDVVEAESLGLNPD-YIDIYSNSWGPDD 150 (297)
T ss_pred cccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCC-c-cccHHHHHHHhcccC-CceEEECCCCCCC
Confidence 788999999999999853210 2389999999999999876 3 344455566665554 4699999999763
Q ss_pred CCC---CcccHHHHHHHHHhh-----CCcEEEEecCCCCCCCCC----ccCCCCceEEeecccCccceeeeEEeCCCeEE
Q 044745 295 TLN---FTQDVIAIGSFHAMA-----KGVLTLHSAGNSGPFIGS----TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTL 362 (753)
Q Consensus 295 ~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~ 362 (753)
... .....+..++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~--------------- 215 (297)
T cd04059 151 DGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN--------------- 215 (297)
T ss_pred CCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC---------------
Confidence 221 112233444444443 799999999999973321 12356889999875432
Q ss_pred eeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCc
Q 044745 363 VGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEF 442 (753)
Q Consensus 363 ~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 442 (753)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCcc----
Q 044745 443 NKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVD---- 518 (753)
Q Consensus 443 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~---- 518 (753)
+.++.||++|+.. ++.|||..
T Consensus 216 -----------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 216 -----------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred -----------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 4567899999987 89999987
Q ss_pred ---EEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 519 ---ILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 519 ---I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 241 ~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665442 0136788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=328.63 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=173.7
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
||+|||||||||++||+|.+.-.. ...+. . .....+.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~------~----~~~~~~~~~~~d~~gHGT~vAgiia~~- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI------D----LEIIVVSAEGGDKDGHGTACAGIIKKY- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc------c----cccccCCCCCCCCCCcHHHHHHHHHcc-
Confidence 799999999999999999864110 00000 0 000111244567899999999999754
Q ss_pred ccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHh
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAM 311 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~ 311 (753)
+|+++|+.+|+++....+..+++++||+|+++++++|||||||... ......+..++.++.
T Consensus 58 -----------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~ 118 (222)
T cd07492 58 -----------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAY 118 (222)
T ss_pred -----------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHH
Confidence 5999999999998723388899999999999999999999999872 223356677788888
Q ss_pred hCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCC
Q 044745 312 AKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCES 391 (753)
Q Consensus 312 ~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~ 391 (753)
++|+++|+||||++.... .+...|++|+|++...++
T Consensus 119 ~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------- 154 (222)
T cd07492 119 KAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------- 154 (222)
T ss_pred HCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------------------
Confidence 999999999999987543 356778899998754221
Q ss_pred CCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcC
Q 044745 392 DFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKST 471 (753)
Q Consensus 392 ~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 471 (753)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchh
Q 044745 472 KKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551 (753)
Q Consensus 472 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 551 (753)
.. +.+++ ++|+.|||.+|+++.+.+ .|..++||||||
T Consensus 155 -------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aa 191 (222)
T cd07492 155 -------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAA 191 (222)
T ss_pred -------------------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHH
Confidence 00 11233 349999999999987663 689999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 552 P~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
|+|||++|||+|++|+|+++|||++|+.||+
T Consensus 192 p~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 192 PHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=342.31 Aligned_cols=250 Identities=26% Similarity=0.349 Sum_probs=175.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCC----CCCCCCCCCCCCCCcchhhccc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTT----DDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g----~~~~~~~~~D~~gHGThVAGii 227 (753)
.|+|||||||||++||+|.+.-... . +.+.....+.. +..+.....|..||||||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii 63 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----S-------------KNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI 63 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----c-------------cccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence 4899999999999999999531100 0 00000000100 0111234567899999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCC-------c
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNF-------T 299 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~-------~ 299 (753)
+|+... .||||+|+|+.+|+++. .+ ....+++++|++|++++++|||||||....... .
T Consensus 64 a~~~~~------------~GvAp~a~i~~~~v~~~-~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~ 130 (294)
T cd07482 64 AANGNI------------KGVAPGIGIVSYRVFGS-CGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVE 130 (294)
T ss_pred hcCCCC------------ceeCCCCEEEEEEeecC-CCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhh
Confidence 987421 59999999999999987 55 488999999999999999999999997632211 1
Q ss_pred ccHHHHHHHHHhhCCcEEEEecCCCCCCCCC----------------------ccCCCCceEEeecccCccceeeeEEeC
Q 044745 300 QDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS----------------------TVSVAPWLMSVAASNTDRLFVDKVVLG 357 (753)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~ 357 (753)
.+.+..++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 131 ~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~------------ 198 (294)
T cd07482 131 YNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD------------ 198 (294)
T ss_pred hHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC------------
Confidence 2346667777889999999999999965411 112233444444322
Q ss_pred CCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEe
Q 044745 358 SGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSL 437 (753)
Q Consensus 358 ~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~ 437 (753)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc
Q 044745 438 NDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~ 517 (753)
..+.++.||++|+. ++|++|||.
T Consensus 199 --------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~ 221 (294)
T cd07482 199 --------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGG 221 (294)
T ss_pred --------------------------------------------------CCCCcCccccCCCC-------cceEECCCC
Confidence 23567789999875 359999999
Q ss_pred cEEeccCCCCCC--CCC-------CCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 044745 518 DILAAFSPLGAV--SDD-------PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP-SAIKSAIMTT 580 (753)
Q Consensus 518 ~I~sa~~~~~~~--~~~-------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~-~~ik~~L~~T 580 (753)
++.......... ... ......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 222 DFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 885322211100 000 00123367899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=332.09 Aligned_cols=243 Identities=27% Similarity=0.357 Sum_probs=186.8
Q ss_pred CCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCCCCCCCCcchhhccc
Q 044745 149 VESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTARDIQGHGTHTASTA 227 (753)
Q Consensus 149 ~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~~D~~gHGThVAGii 227 (753)
+|+||+|+|||+||+++||+|.+..... ..+ ...........|..+|||||||+|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~HGT~vagii 56 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA------------------------SYYVAVNDAGYASNGDGDSHGTHVAGVI 56 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc------------------------ccccccccccCCCCCCCCChHHHHHHHH
Confidence 6999999999999999999998652110 001 000001134567899999999999
Q ss_pred ccCcccccccccccccceeecccccceeccccccCCC-CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCC---------
Q 044745 228 SGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-GCAETAILGAFDDAIADGVDIITISLGGQNTLN--------- 297 (753)
Q Consensus 228 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~--------- 297 (753)
+|...+ ..+.|+||+|+|+.+|+++... .+....+.++++++++.+++|||||||......
T Consensus 57 ag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 127 (267)
T cd04848 57 AAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGS 127 (267)
T ss_pred hcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhh
Confidence 998632 3348999999999999998722 366778899999999999999999999874222
Q ss_pred --CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc---------cCCCCceEEeecccCccceeeeEEeCCCeEEeeEE
Q 044745 298 --FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST---------VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366 (753)
Q Consensus 298 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s 366 (753)
.....+...+..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------------------- 188 (267)
T cd04848 128 AATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------------------- 188 (267)
T ss_pred ccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------------------
Confidence 1455667777888999999999999998654332 2245788888876543
Q ss_pred eccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccc
Q 044745 367 INSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVS 446 (753)
Q Consensus 367 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 446 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceec--ccCCCCCCCCCCCCCCceeeCCccEEeccC
Q 044745 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVAD--FSSRGPNEIVPDILKPDISAPGVDILAAFS 524 (753)
Q Consensus 447 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~GP~~~~~~~~KPDI~APG~~I~sa~~ 524 (753)
+.... ||++|+.. ..+++.|||.+|+++.+
T Consensus 189 -------------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~ 220 (267)
T cd04848 189 -------------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDP 220 (267)
T ss_pred -------------------------------------------CCcccccccccchhh-----hhheeecCcCceeeccc
Confidence 11222 47887643 23479999999999876
Q ss_pred CCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044745 525 PLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 582 (753)
Q Consensus 525 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~ 582 (753)
... ..|..++|||||||+|||++||++|++|+|++++||++|++||+
T Consensus 221 ~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 421 46889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=328.55 Aligned_cols=352 Identities=23% Similarity=0.332 Sum_probs=266.6
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCC-------ccceEEEEecceeeEEEEEeCH-----HHHHHhhcCCC
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSS-------VENVLVRSYKRSFNGFAAKLTD-----HERQKLASMEG 116 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~v~~~y~~~~~g~s~~~~~-----~~~~~L~~~p~ 116 (753)
.+.+|||+|+.... ...++.++++-++... .+......|-.-|.-+-++-.. -++++|+.+|.
T Consensus 48 ve~EyIv~F~~y~~-----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKP-----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred ecceeEEEeccccc-----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 34679999998543 4457777777664111 1222333454555555554432 25789999999
Q ss_pred eEEEEeCceeccccC-----------------------------------CCc----------cccccccccccCCCCCC
Q 044745 117 VVSVFPSRTLQLHTT-----------------------------------RSW----------DFMGLNQSITRKRSVES 151 (753)
Q Consensus 117 V~~v~~~~~~~~~~~-----------------------------------~s~----------~~~g~~~~~~~~~~~G~ 151 (753)
|+.|.|.+.+..-.. .+. ..++++ -+|+.|++|+
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa 201 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGA 201 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCC
Confidence 999999876542100 000 123344 7899999999
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
+|+|||.|||+.-+||.|+.- ..-.++... ....|.-||||.|||+|||..
T Consensus 202 ~VkvAiFDTGl~~~HPHFrnv-------------------------KERTNWTNE----~tLdD~lgHGTFVAGvia~~~ 252 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRNV-------------------------KERTNWTNE----DTLDDNLGHGTFVAGVIAGRN 252 (1033)
T ss_pred ceEEEEeecccccCCccccch-------------------------hhhcCCcCc----cccccCcccceeEeeeeccch
Confidence 999999999999999999832 001112111 345578999999999999874
Q ss_pred ccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHh
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAM 311 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~ 311 (753)
.-.|.||+++|+++|||-+..-.+.+.+++|+.||+...+||+|+|+|++ ++.+.|+-.-+....
T Consensus 253 ------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwElt 317 (1033)
T KOG4266|consen 253 ------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELT 317 (1033)
T ss_pred ------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhc
Confidence 12899999999999999872338889999999999999999999999998 567788877777888
Q ss_pred hCCcEEEEecCCCCCCCCCccCCCC--ceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCC
Q 044745 312 AKGVLTLHSAGNSGPFIGSTVSVAP--WLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPC 389 (753)
Q Consensus 312 ~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~ 389 (753)
.+.|++|.|+||+||-.++..|.+. .||.||..+
T Consensus 318 AnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGId-------------------------------------------- 353 (1033)
T KOG4266|consen 318 ANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID-------------------------------------------- 353 (1033)
T ss_pred cCcEEEEEecCCCCcceeecCCcccccceeeecccc--------------------------------------------
Confidence 9999999999999998877766442 344444221
Q ss_pred CCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHh
Q 044745 390 ESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLK 469 (753)
Q Consensus 390 ~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 469 (753)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEccceeecCCCCCceecccCCCCCC----CCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeec
Q 044745 470 STKKPEANILSTEAVKDSEAPVVADFSSRGPNE----IVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS 545 (753)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 545 (753)
-.+.+|.|||||-+. ...||+||||++-|.+|...... .+...+|
T Consensus 354 ------------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LS 402 (1033)
T KOG4266|consen 354 ------------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLS 402 (1033)
T ss_pred ------------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhcc
Confidence 236789999999764 26899999999999999866544 3678899
Q ss_pred cccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 044745 546 GTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 546 GTSmAaP~VAG~aALl~~----~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 609 (753)
|||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++... -+.||+|++|+.++.+-
T Consensus 403 GTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 403 GTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKLDLLESYQI 466 (1033)
T ss_pred CCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcchhHHHHHHH
Confidence 999999999999999977 2345699999999999999998873 58999999999998873
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=288.40 Aligned_cols=194 Identities=22% Similarity=0.234 Sum_probs=143.2
Q ss_pred CCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHH--HHCCCcEEEeec
Q 044745 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDA--IADGVDIITISL 290 (753)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~gvdVIn~Sl 290 (753)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457999999999999997 45679999998665221 223356677787 667999999999
Q ss_pred CCCCCCC-----CcccHHHHHHHHHhhC-CcEEEEecCCCCCCCC-----CccCCCCceEEeecccCccceeeeEEeCCC
Q 044745 291 GGQNTLN-----FTQDVIAIGSFHAMAK-GVLTLHSAGNSGPFIG-----STVSVAPWLMSVAASNTDRLFVDKVVLGSG 359 (753)
Q Consensus 291 G~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVga~~~~~~~~~~~~~~~~ 359 (753)
|...... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9873332 1234567777776666 9999999999998532 23446788999998654310
Q ss_pred eEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEecc
Q 044745 360 QTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLND 439 (753)
Q Consensus 360 ~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~ 439 (753)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCC--CCCCCCCCCCCCceeeCCc
Q 044745 440 VEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSR--GPNEIVPDILKPDISAPGV 517 (753)
Q Consensus 440 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~--GP~~~~~~~~KPDI~APG~ 517 (753)
....+.||++ +|+. ++..||||+|||+
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~APG~ 192 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVAPGS 192 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCC--CCCceeEEEEeee
Confidence 0123455664 4543 7889999999999
Q ss_pred cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhcC
Q 044745 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP------SAIKSAIMTTA 581 (753)
Q Consensus 518 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~------~~ik~~L~~TA 581 (753)
+|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|++|+
T Consensus 193 ~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 193 NYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 9998 22 35889999999999999999999999877764 45677776653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=306.82 Aligned_cols=240 Identities=28% Similarity=0.364 Sum_probs=185.2
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
...|||||||||+|+..+ .....||||+|+|+.+++.+..-| .+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 356999999999999754 334489999999999999765333 5667789999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccC---CCCceEEeecccCccceeeeEEeCCCeEEeeEEeccC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS---VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSF 370 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~ 370 (753)
..-+.....++..-..+.++|+++|+||||+||.-.+++. ..-.+|.|||.-......+.
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~----------------- 443 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE----------------- 443 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-----------------
Confidence 5444455566655555668999999999999998877654 44578888874322110000
Q ss_pred CCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccc
Q 044745 371 SSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVS 450 (753)
Q Consensus 371 ~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 450 (753)
| + ++.
T Consensus 444 ------y-------------------------------------------------------~---~~e----------- 448 (1304)
T KOG1114|consen 444 ------Y-------------------------------------------------------S---VRE----------- 448 (1304)
T ss_pred ------h-------------------------------------------------------h---hhc-----------
Confidence 0 0 000
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCC
Q 044745 451 LPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS 530 (753)
Q Consensus 451 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 530 (753)
.-....-.+|||||+. ||-+-..|.|||+.|.+.-...
T Consensus 449 ------------------------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t---- 486 (1304)
T KOG1114|consen 449 ------------------------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT---- 486 (1304)
T ss_pred ------------------------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh----
Confidence 0113456789999998 9999999999999986532221
Q ss_pred CCCCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCcccc
Q 044745 531 DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606 (753)
Q Consensus 531 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~A 606 (753)
...-..|.|||||+|+++|.+|||++. +-.|||..||.+|++||+++++. .++.+|.|+|++++|
T Consensus 487 -------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 487 -------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKA 555 (1304)
T ss_pred -------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHH
Confidence 135689999999999999999998764 67899999999999999999987 379999999999999
Q ss_pred CC
Q 044745 607 VN 608 (753)
Q Consensus 607 l~ 608 (753)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=274.69 Aligned_cols=234 Identities=33% Similarity=0.490 Sum_probs=176.9
Q ss_pred cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcc
Q 044745 153 IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEV 232 (753)
Q Consensus 153 V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~ 232 (753)
|+|+|||+|++++||+|... ..... ...++...........+..+||||||++|++...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 68999999999999987211 00000 0111111101112455788999999999999863
Q ss_pred cccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHH-HCCCcEEEeecCCCCCCCCcccHHHHHHHHH
Q 044745 233 KDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAI-ADGVDIITISLGGQNTLNFTQDVIAIGSFHA 310 (753)
Q Consensus 233 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~-~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a 310 (753)
. ....|+||+++|+.+|+... .+ .....+++++++++ +.+++|||||||..... ....+...+..+
T Consensus 60 ~---------~~~~g~a~~a~i~~~~~~~~-~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~ 127 (241)
T cd00306 60 N---------GGGVGVAPGAKLIPVKVLDG-DGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYA 127 (241)
T ss_pred C---------CCCEEeCCCCEEEEEEEecC-CCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHH
Confidence 2 11289999999999999877 44 67888999999999 89999999999988322 345667777777
Q ss_pred hhC-CcEEEEecCCCCCCCC---CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCC
Q 044745 311 MAK-GVLTLHSAGNSGPFIG---STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS 386 (753)
Q Consensus 311 ~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~ 386 (753)
.++ |+++|+||||++.... ..+...|++|+||+.+.+.
T Consensus 128 ~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------------------------------- 169 (241)
T cd00306 128 LAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------------------------------- 169 (241)
T ss_pred HHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------------------------------
Confidence 777 9999999999998776 4667889999999865431
Q ss_pred CCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHH
Q 044745 387 RPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 387 ~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 466 (753)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEccceeecCCCCCcee-cccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeec
Q 044745 467 YLKSTKKPEANILSTEAVKDSEAPVVA-DFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS 545 (753)
Q Consensus 467 ~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 545 (753)
... .++++|+ |||+.|||.++...... ....+..++
T Consensus 170 ------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~ 206 (241)
T cd00306 170 ------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLS 206 (241)
T ss_pred ------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeec
Confidence 111 3444444 56999999999875111 124789999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044745 546 GTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 580 (753)
Q Consensus 546 GTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~T 580 (753)
|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 207 GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 207 GTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=241.47 Aligned_cols=269 Identities=28% Similarity=0.398 Sum_probs=197.3
Q ss_pred ccccC--CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCCCCCCC
Q 044745 142 SITRK--RSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTARDIQG 218 (753)
Q Consensus 142 ~~~~~--~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~~D~~g 218 (753)
..|.. +.+|+||+|+|||+||+..||+|.+... ..++| .+... ....|..+
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~d~~~ 184 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV------------------------AGGDFVDGDPE--PPFLDDNG 184 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc------------------------cccccccCCCC--CCCCCCCC
Confidence 67887 8999999999999999999999986521 00222 11100 02468999
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCC--CcEEEeecCCCCC
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADG--VDIITISLGGQNT 295 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g--vdVIn~SlG~~~~ 295 (753)
|||||+|++++.... ......|+||+++++.+|++....| ...++++++|++++..+ +++||||+|.. .
T Consensus 185 hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 185 HGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred Ccceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 999999999984211 1122489999999999999987224 66777899999999999 99999999985 2
Q ss_pred CCCcccHHHHHHHHHhhCC-cEEEEecCCCCCCCCC----ccCCC--CceEEeecccCccceeeeEEeCCCeEEeeEEec
Q 044745 296 LNFTQDVIAIGSFHAMAKG-VLTLHSAGNSGPFIGS----TVSVA--PWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~ 368 (753)
.......+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 3334455666667777777 9999999999976521 11111 24555554321
Q ss_pred cCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccc
Q 044745 369 SFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSV 448 (753)
Q Consensus 369 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 448 (753)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEe-----cc
Q 044745 449 VSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILA-----AF 523 (753)
Q Consensus 449 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~s-----a~ 523 (753)
.+.++.||++|+. -..+++|||.+|.+ .+
T Consensus 315 ----------------------------------------~~~~~~~s~~g~~------~~~~~~apg~~i~~~~~~~~~ 348 (508)
T COG1404 315 ----------------------------------------SDTVASFSNDGSP------TGVDIAAPGVNILSLSAVNTL 348 (508)
T ss_pred ----------------------------------------CCccccccccCCC------CCcceeCCCccccccccceee
Confidence 1567789999974 12299999999987 33
Q ss_pred CCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCCC--CCCCCCCCCCCccCCCC
Q 044745 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMTTAWP--MNSSKNKDAEFAFGSGH 600 (753)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~ls~~~ik~~L~~TA~~--~~~~~~~~~~~~~G~G~ 600 (753)
++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....++.|.
T Consensus 349 ~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 412 (508)
T COG1404 349 PGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDNLVGGGL 412 (508)
T ss_pred eCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----cccccccCc
Confidence 3321 2499999999999999999999999999 89999999999988874 222 246677776
Q ss_pred CCccccCC
Q 044745 601 INPVEAVN 608 (753)
Q Consensus 601 in~~~Al~ 608 (753)
.+...+..
T Consensus 413 ~~~~~~~~ 420 (508)
T COG1404 413 ANLDAAAT 420 (508)
T ss_pred cccccccc
Confidence 66665554
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=210.66 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=102.8
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecC-CCCCCCCCCCC--CCC
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT-TDDISGNTARD--IQG 218 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~-g~~~~~~~~~D--~~g 218 (753)
.+|..+++|++|++||+|.||||-||+++.. ..--..++|. .++.+++-..| .+.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssndpfpyprytddwfns 209 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSNDPFPYPRYTDDWFNS 209 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccCCCCCCCcccchhhhc
Confidence 7899999999999999999999999999842 1112334452 22222222233 589
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCCCCCCC
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGGQNTLN 297 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~~ 297 (753)
|||.|||-+++...++ +.| .|||.+.++..+|+++. -+..|+++|--..-+ ..++|.+-|||......
T Consensus 210 hgtrcagev~aardng--icg------vgvaydskvagirmldq---pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 210 HGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred cCccccceeeeeccCC--cee------eeeeeccccceeeecCC---chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 9999999887765432 222 89999999999999876 556666665322211 24689999999875444
Q ss_pred CcccHH---HHHHHHHh-----hCCcEEEEecCCCCCC
Q 044745 298 FTQDVI---AIGSFHAM-----AKGVLTLHSAGNSGPF 327 (753)
Q Consensus 298 ~~~~~~---~~a~~~a~-----~~Gi~vV~AAGN~G~~ 327 (753)
..+.|- .+++-+-+ ..|-+.|.|.|..|.+
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 444443 22222323 2466889999887754
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=181.17 Aligned_cols=103 Identities=23% Similarity=0.196 Sum_probs=81.4
Q ss_pred ccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHC---CCcEEEeecCCCCCCC--CcccHHHHHHHHHhhCCcE
Q 044745 242 QGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIAD---GVDIITISLGGQNTLN--FTQDVIAIGSFHAMAKGVL 316 (753)
Q Consensus 242 ~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~ 316 (753)
...+.||||+|+|+.|+++++ ....++.++.+++.+ +++|||+|||...... ...+.+..++.+|..+||.
T Consensus 80 v~~~~gvAP~a~i~~~~~~~~----~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 80 VEYAGAIAPGANITLYFAPGT----VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHHhccCCCeEEEEEECCc----CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 344699999999999999654 245677888888887 9999999999873211 1235677788889999999
Q ss_pred EEEecCCCCCCCC-----------CccCCCCceEEeecccCcc
Q 044745 317 TLHSAGNSGPFIG-----------STVSVAPWLMSVAASNTDR 348 (753)
Q Consensus 317 vV~AAGN~G~~~~-----------~~~~~~p~vitVga~~~~~ 348 (753)
||+|+||+|.... ..+...|||++||+++...
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999997653 2456889999999987653
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=96.27 Aligned_cols=115 Identities=37% Similarity=0.574 Sum_probs=90.4
Q ss_pred EEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee------cchhHHHH
Q 044745 354 VVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS------FDGFNEVH 427 (753)
Q Consensus 354 ~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~------~~k~~~~~ 427 (753)
++++||+.+.|+++++... ..+++++..... .......|.+ ..+...+++||||+|+| .+|..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~--~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLP--GSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCC--CCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6889999999999997655 467887743321 2234478987 76777899999999987 35788999
Q ss_pred hcCceEEEEeccCCcccc---cccccccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 428 KAGAEGSVSLNDVEFNKV---SSVVSLPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 428 ~~Ga~g~i~~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
++||.|+| ++++..... .....+|.+.+..++|+.|++|++++.+++++
T Consensus 74 ~~GA~gvI-~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMI-LANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEE-EEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999 887765433 23468999999999999999999998777665
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-09 Score=89.86 Aligned_cols=76 Identities=34% Similarity=0.461 Sum_probs=57.0
Q ss_pred eEEEEecccCCCCCcc-hhhHHHHHHHHhCC-----CCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCce
Q 044745 52 VHIVYLGSLFRGEYET-SSQHQSILQEVIGD-----SSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRT 125 (753)
Q Consensus 52 ~yIV~l~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~ 125 (753)
+|||+|++... ... ...+.+++.+++.. .....++.+.|+..||||+++++++++++|+++|+|++|+||..
T Consensus 1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999865 333 55666666654331 35678999999889999999999999999999999999999999
Q ss_pred eccc
Q 044745 126 LQLH 129 (753)
Q Consensus 126 ~~~~ 129 (753)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=97.51 Aligned_cols=107 Identities=28% Similarity=0.417 Sum_probs=82.0
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV--- 445 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~--- 445 (753)
....+++|.+... . ..+...+++|||+||+| .+|..+++++||.|+| ++|+.....
T Consensus 25 ~~~~~lv~~g~g~-------------~--~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvI-i~n~~~~~~~~~ 88 (143)
T cd02133 25 GKTYELVDAGLGT-------------P--EDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVI-IYNNVDGLIPGT 88 (143)
T ss_pred CcEEEEEEccCCc-------------h--hccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEE-EeecCCCccccc
Confidence 4678899876532 2 34455679999999987 5789999999999999 888775433
Q ss_pred -cccccccEEEeehhhHHHHHHHHhcCCCCeEEE-ccceeecCCCCCceecccCCCCC
Q 044745 446 -SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI-LSTEAVKDSEAPVVADFSSRGPN 501 (753)
Q Consensus 446 -~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~ 501 (753)
.....+|.++++..+|+.|.+|+++ ++++ +..+.. ..+++.++.||||||+
T Consensus 89 ~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 89 LGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 1124689999999999999999988 4445 333333 4567889999999996
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=98.96 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=100.7
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCC---CCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDI---SGNTA 213 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~---~~~~~ 213 (753)
+.+. ..|..+++|.++.|+|.|+|+...||+..+. ....+..++..... .-.+.
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~----------------------~~~~~s~d~~~~~~~p~~~~~~ 76 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN----------------------YDPLGSYDVNRHDNDPEPRCDG 76 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc----------------------cCcceeEeeecCCCCcccccCC
Confidence 4455 8999999999999999999999999999843 12233444422211 11222
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH-HCCCcEEEeecCC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI-ADGVDIITISLGG 292 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~gvdVIn~SlG~ 292 (753)
.....|||-||+-.+....+. --..|+++++++..++++.. +. ++...+..... ...+++-+.|||-
T Consensus 77 ~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~---~v-~~~~~~~~~~~~~~~~di~scsw~p 144 (431)
T KOG3525|consen 77 TNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAG---CV-SDAVEAPSLGFGPCHIDIYSCSWGP 144 (431)
T ss_pred CCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeee---ec-ccceecccccCCCCCceeecCcCCc
Confidence 235889999999999885221 11289999999999998643 11 12222222222 2346888999997
Q ss_pred CCCCCCccc---HHHHHHHHH-----hhCCcEEEEecCCCCCCC
Q 044745 293 QNTLNFTQD---VIAIGSFHA-----MAKGVLTLHSAGNSGPFI 328 (753)
Q Consensus 293 ~~~~~~~~~---~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 328 (753)
......... ....+..+. ..+|-+.+++.||.|...
T Consensus 145 ddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 145 DDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred ccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 743222222 223333332 367889999999988654
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.8e-06 Score=98.19 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=89.4
Q ss_pred ccccCCCCCCCcEEEEEe-cCCCCCCCCcc--CCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCC
Q 044745 142 SITRKRSVESDIIVGVID-SGIWPESESFS--DEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQG 218 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVID-tGid~~Hp~f~--d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~g 218 (753)
.+++.+.+|+|++||||| -|-.+...++. |.-++-++ ....++. +.+ -..+
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~Fd~~~Gip~-------------~~~~~V~----~ig---------~g~~ 272 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYSFDQQYGIPN-------------PILSRVT----YIG---------PGIG 272 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHHHHHhhCCCC-------------CCceEEE----EeC---------CCCC
Confidence 466678899999999999 56544433332 11000000 0001110 111 2456
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCC-cEEEeecCCCC--C
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGV-DIITISLGGQN--T 295 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~ 295 (753)
|+||=+. . .-++..-..-+||+|+|..|-.- ......+..|+.+-...=+ -++-.||+... .
T Consensus 273 ~~~~g~~----E-------~sLDVE~s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~ 337 (1174)
T COG4934 273 SGTGGAE----E-------TSLDVEWSHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQG 337 (1174)
T ss_pred CCCCccc----c-------ceeehhhhhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhcc
Confidence 7776553 1 11233344778999999998772 2222223333333222211 23335666431 1
Q ss_pred CCC--cccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--------ccCCCCceEEeec
Q 044745 296 LNF--TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--------TVSVAPWLMSVAA 343 (753)
Q Consensus 296 ~~~--~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVga 343 (753)
..+ .-+.++...+.|..+|+.+++|+|.+|....+ .+..+|++++||.
T Consensus 338 ~~~~~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 338 PISPGYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred CCChHHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 222 33445566667889999999999999876643 3457899999997
|
|
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=72.19 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=56.7
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec--------CCce---------E-EEEEEcCeEEEeeCCcEEEEEEEEEecc---C
Q 044745 671 FTINFPRTVTNVGLANSTYKAKILQ--------NSKI---------V-SIKVVPESLSFKSLNEKKSFSVTVTGKG---L 729 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~~--------~~g~---------~-~v~v~p~~~~~~~~~~~~~~~vt~~~~~---~ 729 (753)
...+++.||+|.|+.+.+|+++... ..|. . .++..|..+++ ++|++++|+|+++++. .
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 3578889999999999999998661 0110 1 57777889999 8999999999999964 2
Q ss_pred CCCCeEEEEEEEEC-CCe-EEEccc
Q 044745 730 PNGAIVSTSLMWSD-GNH-RVRSPI 752 (753)
Q Consensus 730 ~~~~~~~G~~~~~~-~~~-~v~~p~ 752 (753)
..+.+++|+|.+++ ..+ .+++|+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy 111 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPY 111 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeee
Confidence 45789999999986 444 899997
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.8e-06 Score=74.96 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc----
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---- 445 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---- 445 (753)
..-++++.... ....|.+ ..+...+++|||++|+| .+|..+++++||.++| ++|+.....
T Consensus 17 i~~~lv~~~~~--------~~~gC~~--~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avI-i~n~~~~~~~~~~ 85 (122)
T cd04816 17 VTAPLVPLDPE--------RPAGCDA--SDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVI-VVNNSDGGGTAGT 85 (122)
T ss_pred cEEEEEEcCCC--------CccCCCc--cccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEeCCCCcccccc
Confidence 34566664421 2367987 66667789999999998 5789999999999999 888765321
Q ss_pred ---c-ccccccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 446 ---S-SVVSLPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 446 ---~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
. ....+|.++|+..+|+.|++++..+.+.+++
T Consensus 86 ~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 86 LGAPNIDLKVPVGVITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred ccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence 1 3456999999999999999999988766554
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-05 Score=70.06 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=62.1
Q ss_pred CCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc-ccc------cccccccEEEeehhhHHH
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF-NKV------SSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~-~~~------~~~~~~p~~~i~~~~g~~ 463 (753)
..|.+ ..+ +.+++|||+|++| .+|..+++++||.++| +||+.. ... .+...+|.+.|+.++|+.
T Consensus 32 ~gC~~--~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vI-v~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~ 107 (122)
T cd02130 32 LGCDA--ADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAI-IYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107 (122)
T ss_pred CCCCc--ccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence 45775 333 3579999999998 6899999999999999 888763 211 234579999999999999
Q ss_pred HHHHHhcCCCCeEE
Q 044745 464 IYSYLKSTKKPEAN 477 (753)
Q Consensus 464 l~~~~~~~~~~~~~ 477 (753)
|++.+.++++.+++
T Consensus 108 L~~~l~~g~~v~~~ 121 (122)
T cd02130 108 LVAALANGGEVSAN 121 (122)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999998776654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.1e-06 Score=71.97 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=55.3
Q ss_pred CCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcc-------cccccccccEEEeehhhHHH
Q 044745 396 QLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFN-------KVSSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 396 ~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~~p~~~i~~~~g~~ 463 (753)
..|.+ ......+++||||||+| .+|..+++++||.|+| ++|.... .......+|+++|+..+|+.
T Consensus 20 ~~~~~--~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvI-i~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~ 96 (101)
T PF02225_consen 20 GDCCP--SDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVI-IYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEA 96 (101)
T ss_dssp CHHHH--HHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEE-EE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHH
T ss_pred ccccc--cccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEE-EEeCCccccCcccccCCCCcEEEEEEeCHHHHhh
Confidence 34555 67778899999999988 6899999999999999 8882111 11556789999999999999
Q ss_pred HHHHH
Q 044745 464 IYSYL 468 (753)
Q Consensus 464 l~~~~ 468 (753)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.2e-05 Score=70.77 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred CCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc-------cccccccEEEeehhhH
Q 044745 394 DPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV-------SSVVSLPAVALNEDNF 461 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~~p~~~i~~~~g 461 (753)
+...|.+ .... .+++|||++|+| .+|..+++++||.|+| ++|+..... .....+|.+.++..+|
T Consensus 26 ~~~~C~~--~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvI-i~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g 101 (118)
T cd04818 26 NTDGCTA--FTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVI-VANNVAGGAPITMGGDDPDITIPAVMISQADG 101 (118)
T ss_pred cccccCC--CCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEE-EEECCCCCcceeccCCCCCCEEeEEEecHHHH
Confidence 4567987 5553 459999999987 4788999999999999 887765422 1235799999999999
Q ss_pred HHHHHHHhcCCCCeEE
Q 044745 462 NSIYSYLKSTKKPEAN 477 (753)
Q Consensus 462 ~~l~~~~~~~~~~~~~ 477 (753)
+.|+.|++.+...+++
T Consensus 102 ~~l~~~l~~g~~v~v~ 117 (118)
T cd04818 102 DALKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHHHhcCCcEEEe
Confidence 9999999988765554
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=71.29 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=66.3
Q ss_pred CCCCcCCCCCCC--ccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCc-cc-c-----cccccccEEEeehh
Q 044745 394 DPQLCTDGQGCI--DSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEF-NK-V-----SSVVSLPAVALNED 459 (753)
Q Consensus 394 ~~~~C~~~~~~~--~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~-~~-~-----~~~~~~p~~~i~~~ 459 (753)
..+.|.+ ... ++.++.|+|+|++| .+|..+++.+||.++| +||+.. .. . .....+|.++|+..
T Consensus 43 ~~~gC~~--~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVI-Iyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 43 DHYGCDP--DTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVV-IYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CcCCCCC--CccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 4578987 444 45679999999999 7899999999999999 888875 21 1 22347899999999
Q ss_pred hHHHHHHHHhcCCCCeEEE
Q 044745 460 NFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 460 ~g~~l~~~~~~~~~~~~~i 478 (753)
+|+.|++++..+.+.+++|
T Consensus 120 ~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 120 KGMEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHHHcCCcEEEeC
Confidence 9999999999887766653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.5e-05 Score=69.81 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCcCCCCCC--CccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc--c--c-----ccccccEEEee
Q 044745 394 DPQLCTDGQGC--IDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK--V--S-----SVVSLPAVALN 457 (753)
Q Consensus 394 ~~~~C~~~~~~--~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~--~--~-----~~~~~p~~~i~ 457 (753)
....|.+ +. +...+++||||+|.| .+|..+++++||.|+| ++++.... . . ....+|.+.++
T Consensus 29 ~~~~C~~--~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvi-i~~~~~~~~~~~~~~~~~~~~~~iP~~~is 105 (126)
T cd00538 29 PLVGCGY--GTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVI-IYNNGDDPGPQMGSVGLESTDPSIPTVGIS 105 (126)
T ss_pred ceEEEec--CcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEE-EEECCCCcccccccccCCCCCCcEeEEEeC
Confidence 4456776 54 567789999999987 5789999999999999 88776532 1 1 34579999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 044745 458 EDNFNSIYSYLKSTKKPEA 476 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~ 476 (753)
..+|+.|..|+.++.+.++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 106 YADGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHHHhcCCceEE
Confidence 9999999999998765544
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=66.44 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=63.8
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc----c-------cccccccEEEeeh
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK----V-------SSVVSLPAVALNE 458 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~----~-------~~~~~~p~~~i~~ 458 (753)
.+.|.+ .. ...+++|||+|++| .+|..+++++||.++| +||+.... + .....||+++++.
T Consensus 21 ~~gC~~--~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avI-I~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEE--LR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVI-ITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCC--CC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 467986 22 24578999999999 7899999999999999 88875431 1 1234799999999
Q ss_pred hhHHHHHHHHhcCCCCeEEE
Q 044745 459 DNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 459 ~~g~~l~~~~~~~~~~~~~i 478 (753)
.+|+.|++.+..+..+++.|
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=66.93 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred CCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc-------cccccccEEEeehhhH
Q 044745 394 DPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV-------SSVVSLPAVALNEDNF 461 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~~~p~~~i~~~~g 461 (753)
+...|.+ ..+.+.+++|||+|++| .+|..+++++||.++| ++|+..... .....||+++|+..+|
T Consensus 29 ~~~gC~~--~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVI-I~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG 105 (120)
T cd02129 29 SSVLCSA--SDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLL-IVSRERLVPPSGNRSEYEKIDIPVALLSYKDM 105 (120)
T ss_pred CcCCCCc--cccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence 4567988 66666789999999999 7899999999999999 888775311 2445789999999999
Q ss_pred HHHHHHHhc
Q 044745 462 NSIYSYLKS 470 (753)
Q Consensus 462 ~~l~~~~~~ 470 (753)
+.|.+.+..
T Consensus 106 ~~i~~~l~~ 114 (120)
T cd02129 106 LDIQQTFGD 114 (120)
T ss_pred HHHHHHhcc
Confidence 999988864
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=67.59 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=61.3
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc------c------c---ccccccEE
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK------V------S---SVVSLPAV 454 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~------~------~---~~~~~p~~ 454 (753)
...|.+ .. .+.+++|||+|++| .+|..+++++||.++| ++|+.... . . +...||++
T Consensus 27 ~~gC~~--~~-~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avI-I~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSE--IT-NAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGI-VIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccC--CC-CccccCceEEEEECCCCcHHHHHHHHHHCCCcEEE-EEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467986 32 35578999999999 7899999999999999 88655431 1 1 24578999
Q ss_pred EeehhhHHHHHHHHhcCCCCeE
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEA 476 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~ 476 (753)
+++..+|+.|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999988765544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=66.53 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=61.4
Q ss_pred CCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc----cccccccEEEeehhhHHH
Q 044745 393 FDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV----SSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 463 (753)
...+.|.+ ...+..+++|||+|++| .+|..+++++||.++| +||+..... .+...+|.+.+ ..+|+.
T Consensus 39 ~~~~gC~~--~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~avi-iyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~ 114 (129)
T cd02124 39 VADDACQP--LPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVL-IYNNGSGPTDQVGSDADSIIAAVT-PEDGEA 114 (129)
T ss_pred CCcccCcC--CCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEE-EEECCCCcccccCCCCcceeeEEe-HHHHHH
Confidence 35578987 44444579999999999 6899999999999999 888765432 23334555555 999999
Q ss_pred HHHHHhcCCCCeEE
Q 044745 464 IYSYLKSTKKPEAN 477 (753)
Q Consensus 464 l~~~~~~~~~~~~~ 477 (753)
|++.+..+...+++
T Consensus 115 l~~~l~~G~~vtv~ 128 (129)
T cd02124 115 WIDALAAGSNVTVD 128 (129)
T ss_pred HHHHHhcCCeEEEe
Confidence 99999887665554
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00026 Score=65.41 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCCcCCCCCCCccc----cccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc--------------ccccc
Q 044745 394 DPQLCTDGQGCIDSR----LAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV--------------SSVVS 450 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~----~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~--------------~~~~~ 450 (753)
+.+.|.+......+. ...++|+|++| .+|..+++++||.++| ++|+..... .....
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avI-I~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVL-VADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEE-EEECCCCccccccCcccccccccCCCce
Confidence 346788722211122 36789999999 6899999999999999 888765422 12336
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCCeEE
Q 044745 451 LPAVALNEDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 451 ~p~~~i~~~~g~~l~~~~~~~~~~~~~ 477 (753)
||+++|+..+|+.|+..+..+...+++
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 899999999999999999988776654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=66.56 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---------cccccccEEEeehhh
Q 044745 395 PQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---------SSVVSLPAVALNEDN 460 (753)
Q Consensus 395 ~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~~p~~~i~~~~ 460 (753)
.+.|.+ .. .+++|||+|++| .+|..+++++||.++| +||+..... .....||+++|+..+
T Consensus 48 ~~gC~~--~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avI-v~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~ 121 (139)
T cd02132 48 LDCCSP--ST---SKLSGSIALVERGECAFTEKAKIAEAGGASALL-IINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121 (139)
T ss_pred ccccCC--CC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEE-EEECCCcccccccCCCCCCCCCcEeEEEecHHH
Confidence 467986 32 378999999999 7899999999999999 888764321 113579999999999
Q ss_pred HHHHHHHHhcCCCCeEE
Q 044745 461 FNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 461 g~~l~~~~~~~~~~~~~ 477 (753)
|+.|++++..+...+++
T Consensus 122 G~~L~~~l~~g~~Vtv~ 138 (139)
T cd02132 122 GDALNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 99999999988765543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=64.75 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=52.4
Q ss_pred ccccccccEEEEee---c-------chhHHHHhcCceEEEEeccCC--cccc----c---ccccccEEEeehhhHHHHHH
Q 044745 406 DSRLAKGKIVICQS---F-------DGFNEVHKAGAEGSVSLNDVE--FNKV----S---SVVSLPAVALNEDNFNSIYS 466 (753)
Q Consensus 406 ~~~~~~gkiv~~~~---~-------~k~~~~~~~Ga~g~i~~~~~~--~~~~----~---~~~~~p~~~i~~~~g~~l~~ 466 (753)
.+.+++|||+|++| . +|..+++++||.++| +||+. .... . ....||++.+++.+|++|+.
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avI-IyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAI-VYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEE-EEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 34578999999988 2 678999999999999 99987 3211 1 14589999999999999999
Q ss_pred HHhcC
Q 044745 467 YLKST 471 (753)
Q Consensus 467 ~~~~~ 471 (753)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00035 Score=63.58 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=59.4
Q ss_pred CCCCCcCCCCCCCccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc-c--------cccccccEEEeeh
Q 044745 393 FDPQLCTDGQGCIDSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK-V--------SSVVSLPAVALNE 458 (753)
Q Consensus 393 ~~~~~C~~~~~~~~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~-~--------~~~~~~p~~~i~~ 458 (753)
.+.+.|.+ . +..+++|||+|++| .+|..+++++||.++| ++|+.... . .....+|+++++.
T Consensus 25 ~p~~gC~~--~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avI-I~n~~~~~~~~~m~~~~~~~~v~IPav~Is~ 99 (117)
T cd04813 25 SPTDACSL--Q--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVI-VGDDEPGRGLITMFSNGDTDNVTIPAMFTSR 99 (117)
T ss_pred CCCCCCCC--C--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEE-EEECCCcccceecccCCCCCCcEEEEEEEcH
Confidence 35578976 3 56789999999999 7899999999999999 88776532 1 2344799999999
Q ss_pred hhHHHHHHHHhcC
Q 044745 459 DNFNSIYSYLKST 471 (753)
Q Consensus 459 ~~g~~l~~~~~~~ 471 (753)
.++++|..++...
T Consensus 100 ~~g~~L~~l~~~~ 112 (117)
T cd04813 100 TSYHLLSSLLPKS 112 (117)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=60.19 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=62.9
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-------cchhHHHHhcCceEEEEeccCCcccc-
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-------FDGFNEVHKAGAEGSVSLNDVEFNKV- 445 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-------~~k~~~~~~~Ga~g~i~~~~~~~~~~- 445 (753)
....++++.+.... ..+...+++||||++++ .+|..++.++||.|+| ++|+.....
T Consensus 22 ~~~~~lV~~g~G~~---------------~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi-~~~~~~g~~~ 85 (127)
T cd04819 22 EAKGEPVDAGYGLP---------------KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFV-VVNTVPGVLP 85 (127)
T ss_pred CeeEEEEEeCCCCH---------------HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEE-EEeCCCCcCc
Confidence 45778888775421 22334579999999988 2478899999999999 887654422
Q ss_pred ---------cccccccEEEeehhhHHHHHHHHhcCCC
Q 044745 446 ---------SSVVSLPAVALNEDNFNSIYSYLKSTKK 473 (753)
Q Consensus 446 ---------~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 473 (753)
.....+|++.|+.++|+.|...++.+..
T Consensus 86 ~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 86 ATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 1235699999999999999999987543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00079 Score=64.47 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCcCCCCCCC---ccccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc------c---ccccccEEEee
Q 044745 395 PQLCTDGQGCI---DSRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV------S---SVVSLPAVALN 457 (753)
Q Consensus 395 ~~~C~~~~~~~---~~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~------~---~~~~~p~~~i~ 457 (753)
.+.|.+ ... +..++.|+|+|++| .+|..+++++||.++| ++|+..... . ....||+++++
T Consensus 50 ~~gC~~--~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI-I~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSP--IENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI-VYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCC--CcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE-EEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 467986 333 33788999999999 7899999999999999 888765432 1 24589999999
Q ss_pred hhhHHHHHHHHhcCCC
Q 044745 458 EDNFNSIYSYLKSTKK 473 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~ 473 (753)
..+|+.|..++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987754
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.17 Score=44.70 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=57.0
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEECCCeEEEcc
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSP 751 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~p 751 (753)
..+.+.+++|.|.....|++....... ..++++|..-.+ ++|++.+++|+|.+.. . .+.+.+.|.....+..+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~-~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLS-SFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCC-CCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-CceEEEEEEEEECCeEEEEE
Confidence 556667899999999999987644223 456677776666 7899999999999654 2 34568888887666677776
Q ss_pred c
Q 044745 752 I 752 (753)
Q Consensus 752 ~ 752 (753)
+
T Consensus 97 v 97 (102)
T PF14874_consen 97 V 97 (102)
T ss_pred E
Confidence 5
|
|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.052 Score=50.76 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=53.0
Q ss_pred cccccccEEEEeec-----------ch-------hHHHHhcCceEEEEeccCCc-------ccc----cccccccEEEee
Q 044745 407 SRLAKGKIVICQSF-----------DG-------FNEVHKAGAEGSVSLNDVEF-------NKV----SSVVSLPAVALN 457 (753)
Q Consensus 407 ~~~~~gkiv~~~~~-----------~k-------~~~~~~~Ga~g~i~~~~~~~-------~~~----~~~~~~p~~~i~ 457 (753)
..+++||||++.+. .| ...++++||.++| ++|... .+. .....+|++.++
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI-v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL-IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE-EEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 46799999999772 23 5889999999999 877531 111 123469999999
Q ss_pred hhhHHHHHHHHhcCCCCeEE
Q 044745 458 EDNFNSIYSYLKSTKKPEAN 477 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~ 477 (753)
.+++..|...++.+....++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999887655443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.14 Score=42.84 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=39.1
Q ss_pred eeEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc-CCCCCe
Q 044745 671 FTINFPRTVTNVGLAN-STYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG-LPNGAI 734 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~-~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~ 734 (753)
.+.+++.+|+|.|... ...++++..|.| -++...|..+.--++|++++++++|+++. ...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~G-W~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEG-WTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TT-SE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCC-ccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4778999999999654 568888899998 88878888765338999999999999976 344444
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.26 Score=48.33 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=48.4
Q ss_pred cccccccEEEEee-----cchhHHHHhcCceEEEEeccCCccc--------------------c-------c--------
Q 044745 407 SRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNK--------------------V-------S-------- 446 (753)
Q Consensus 407 ~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~--------------------~-------~-------- 446 (753)
..+++|||+|+++ .+|..+++++||+|+| +|++.... + .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvI-iy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVL-IYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEE-EecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 4578999999987 6899999999999999 87763110 0 0
Q ss_pred --ccccccEEEeehhhHHHHHHHHhc
Q 044745 447 --SVVSLPAVALNEDNFNSIYSYLKS 470 (753)
Q Consensus 447 --~~~~~p~~~i~~~~g~~l~~~~~~ 470 (753)
.--.||+.-|+..+++.|+..+.-
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488899999999999998854
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.58 Score=43.73 Aligned_cols=59 Identities=24% Similarity=0.023 Sum_probs=43.1
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----------------cchhHHHHhcCceEEEE
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----------------FDGFNEVHKAGAEGSVS 436 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----------------~~k~~~~~~~Ga~g~i~ 436 (753)
...-++||.+... ....|.. ..+...+++||||++.+ ..|..++.++||.|+|
T Consensus 21 ~v~gelVfvGyG~-------~~~~~~~--~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI- 90 (137)
T cd04820 21 SVEAPLVFVGYGL-------VAPELGH--DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMI- 90 (137)
T ss_pred CceEeEEEecCCc-------CccCcCH--hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEE-
Confidence 3467888887543 2244654 55557799999999986 1488999999999999
Q ss_pred eccCCc
Q 044745 437 LNDVEF 442 (753)
Q Consensus 437 ~~~~~~ 442 (753)
++++..
T Consensus 91 i~~d~~ 96 (137)
T cd04820 91 TLTTPR 96 (137)
T ss_pred EEeCCc
Confidence 776543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.68 Score=44.08 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=43.0
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeec-----------------------chhHHHHhcCc
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSF-----------------------DGFNEVHKAGA 431 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~-----------------------~k~~~~~~~Ga 431 (753)
.+-++||.+.+. ....|.. ..+...+++||||++.+. .|..++...||
T Consensus 20 vtg~lVfvGyGi-------~~~~~~~--~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYGI-------TAPELGY--DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA 90 (151)
T ss_pred ceEeEEEecCCc-------Cccccch--hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC
Confidence 456888877543 2234544 455567899999999652 47889999999
Q ss_pred eEEEEeccCCccc
Q 044745 432 EGSVSLNDVEFNK 444 (753)
Q Consensus 432 ~g~i~~~~~~~~~ 444 (753)
+|+| ++++....
T Consensus 91 ~aVI-v~~d~~~~ 102 (151)
T cd04822 91 AAVI-VVNGPNSH 102 (151)
T ss_pred eEEE-EEeCCccc
Confidence 9999 88776543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.7 Score=39.50 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccC
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGL 729 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 729 (753)
.-.++..++|.+..+.+|+++++.+++ +++......+++ ++|++.++.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~-~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPG-AELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS--EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCC-eEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 335777999999999999999999888 898654478899 89999999999999863
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.74 Score=50.77 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc---------cccccccEEEeehhhHHHHHHHHhcCC
Q 044745 407 SRLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV---------SSVVSLPAVALNEDNFNSIYSYLKSTK 472 (753)
Q Consensus 407 ~~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 472 (753)
...++||+++..| .+|...++++||.+++ +.|+...-. ..+..||+++++.++++.+.....++.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLl-iin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALL-IINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEE-EEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 4568899999998 7999999999999999 777643211 345689999999999999999888777
Q ss_pred CCeEEE
Q 044745 473 KPEANI 478 (753)
Q Consensus 473 ~~~~~i 478 (753)
+.++.+
T Consensus 170 ~V~~~l 175 (541)
T KOG2442|consen 170 NVELAL 175 (541)
T ss_pred eEEEEE
Confidence 777766
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.63 Score=43.80 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=43.1
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-----------------------cchhHHHHhcC
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS-----------------------FDGFNEVHKAG 430 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~-----------------------~~k~~~~~~~G 430 (753)
....|+|+.+.+. ....|.. ..+...|++||||++.+ ..|...++++|
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~--dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSW--DDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc-------CCCCCCh--hhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 3567888887543 2234654 56667799999999854 24888999999
Q ss_pred ceEEEEeccCCc
Q 044745 431 AEGSVSLNDVEF 442 (753)
Q Consensus 431 a~g~i~~~~~~~ 442 (753)
|.|+| ++++..
T Consensus 90 A~gvI-ii~~~~ 100 (142)
T cd04814 90 AAGVL-IVHELA 100 (142)
T ss_pred CcEEE-EEeCCC
Confidence 99999 776644
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=89.77 E-value=8.5 Score=35.24 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred eeEEEEEEEEecCCCCeeEEEEEec----CCceEE-------------------EEEEcCeEEEeeCCcEEEEEEEEEec
Q 044745 671 FTINFPRTVTNVGLANSTYKAKILQ----NSKIVS-------------------IKVVPESLSFKSLNEKKSFSVTVTGK 727 (753)
Q Consensus 671 ~~~~~~rtvtn~~~~~~~y~~~~~~----~~g~~~-------------------v~v~p~~~~~~~~~~~~~~~vt~~~~ 727 (753)
.+.+++.+|+|.++.+.+|.+.+.. ..|.+. |++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 4778999999999999999997522 122111 111 445788 899999999999998
Q ss_pred cCCCCCeEEEEEEEE
Q 044745 728 GLPNGAIVSTSLMWS 742 (753)
Q Consensus 728 ~~~~~~~~~G~~~~~ 742 (753)
...-.+.+-|-|.++
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 866667778878775
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.73 E-value=0.98 Score=53.54 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCCCCcEEEEEecCCCCCCCCcc
Q 044745 147 RSVESDIIVGVIDSGIWPESESFS 170 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~Hp~f~ 170 (753)
.++|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 679999999999999999999886
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=81.71 E-value=1.5 Score=41.39 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=29.0
Q ss_pred ccccccEEEEee-----cchhHHHHhcCceEEEEeccCC
Q 044745 408 RLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVE 441 (753)
Q Consensus 408 ~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~ 441 (753)
-+++|||+|+.. ..|..+++..||.|+| +|.+.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~Gvi-IYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVL-LYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEE-EecCh
Confidence 579999999985 7899999999999999 77754
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 753 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-168 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-104 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 3e-12 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 1e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-07 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 3e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 4e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 4e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 4e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 6e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 9e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 1e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 3e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 3e-06 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 3e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 7e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 7e-06 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 1e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 1e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 1e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 3e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 1e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 1e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 1e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 1e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-04 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 1e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 1e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 1e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 1e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 1e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 2e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 2e-04 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 3e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 3e-04 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 3e-04 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 4e-04 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 4e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 4e-04 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 5e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 8e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 668 bits (1724), Expect = 0.0
Identities = 307/628 (48%), Positives = 408/628 (64%), Gaps = 16/628 (2%)
Query: 130 TTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGR 189
TTRSWDF+G ++ R+ VES+I+VGV+D+GIWPES SF DEGF P P KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 190 NFTCNNKIIGARYYTTDDISG----NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTA 245
NF CN KIIGAR Y N RD GHGTHTASTA+G V A+ +G+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 246 RGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAI 305
RGGVP ARIAAYKVC + GC++T IL A+DDAIADGVDII++S+GG N ++ D IAI
Sbjct: 121 RGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAI 179
Query: 306 GSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGY 365
GSFHA+ +G+LT +SAGN GP +T S++PWL+SVAAS DR FV +V +G+GQ+ G
Sbjct: 180 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGV 239
Query: 366 SINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNE 425
SIN+F + +PLV G D+ + CTD ++ L KGKIV+C++ G +E
Sbjct: 240 SINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDK--SVNPNLLKGKIVVCEASFGPHE 295
Query: 426 VHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVK 485
K+ + L + LP+ L+ ++ + Y+ S + P A I + +
Sbjct: 296 FFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 355
Query: 486 DSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVS 545
++ APVV FSSRGPN D++KPDIS PGV+ILAA+ + V +R FN++S
Sbjct: 356 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RRNTLFNIIS 412
Query: 546 GTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVE 605
GTSMSCPH G+A YVK+++P WSP+AIKSA+MTTA PMN+ N AEFA+GSGH+NP++
Sbjct: 413 GTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLK 472
Query: 606 AVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQV 665
AV PGLVY+ E DY+ LC GY+ + + +I+G+ S C G+ DLNYPS V
Sbjct: 473 AVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN-TGRVWDLNYPSFGLSV 531
Query: 666 SPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVT 725
SP ++F F RT+T+V STY+A I + ++I V P LSF L ++KSF++TV
Sbjct: 532 SPSQTFNQYFNRTLTSVAPQASTYRAMI-SAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590
Query: 726 GKGLPNGAIVSTSLMWSDGNHRVRSPIV 753
G G +VS SL+WSDG H VRSPI
Sbjct: 591 GS--IKGFVVSASLVWSDGVHYVRSPIT 616
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 627 bits (1619), Expect = 0.0
Identities = 252/657 (38%), Positives = 365/657 (55%), Gaps = 49/657 (7%)
Query: 130 TTRSWDFMGLNQS--ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKG 187
TT + DF+ LN S + + D+IV V+DSGIWPES SF D+G PK+WKG CK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 188 GRNFT---CNNKIIGARYYT--------TDDISGNTARDIQGHGTHTASTASGNEVKDAS 236
G F CN K+IGA Y+ T +I+ N+ARD GHGTH AS +GN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 237 FFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296
FG GTARG P AR+A YK E G + ++ A D A+ADGVD+I+IS G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISYGY-RFI 178
Query: 297 NFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVL 356
+D I+I SF AM KGVL SAGN GP IGS + +PW++ VA+ +TDR F + L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVI 416
G+G + G+S+ + + P++ +S C+ + + IVI
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSD----------CSSEELLSQVENPENTIVI 288
Query: 417 CQSFDGFNE----VHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTK 472
C F++ + +A + ++ +++ S+ P V +N+ + +Y+K++
Sbjct: 289 CDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSV 348
Query: 473 KPEANILSTEAVKDSE-APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSD 531
P A I E D++ APVVA S+RGP+ I KPDI APGV ILAA+ P +
Sbjct: 349 TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATS 408
Query: 532 DPED-KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNK 590
+ + + SGTSM+ PHAAG+AA +K+ HP+WSPSAI+SA+MTTA P+++++
Sbjct: 409 IGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468
Query: 591 DAE---------FAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNI 641
+ G+GH++P A++PGLVY+ QDY+ +LCS+ + E I+ +
Sbjct: 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS 528
Query: 642 STCPKGSDKATPKDLNYPSMAAQVSPGKSFTIN---FPRTVTNVGLANSTYKAKILQNSK 698
++ DLNYPS A S +FT+ F RTVTNVG +TYKAK+ + K
Sbjct: 529 ASHNC---SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKL-KAPK 584
Query: 699 IVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMW--SDGNHRVRSPIV 753
+I V P+ L FK+ NEK+S+++T+ G + S+ W +GNH VRSPIV
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 424 bits (1091), Expect = e-136
Identities = 115/605 (19%), Positives = 203/605 (33%), Gaps = 74/605 (12%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT-------CNNKIIGARYY 203
+ +V VID+G E++ A + K + + N+K+ Y
Sbjct: 17 AGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDY 76
Query: 204 TTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPE 263
+ D Q HGTH + SGN A G +P A++ +V
Sbjct: 77 SKDG----KTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVN 128
Query: 264 -LGCAETAILGAFDDAIADGVDIITISLGGQNT-LNFTQDVIAIGSFHAMAKGVLTLHSA 321
L A DAI G +I +S G D +A +KGV + SA
Sbjct: 129 GLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 188
Query: 322 GNSGP---FIGSTVSVAPWLMSVAASNT-DRLFVDKVVLGSGQTLVGYSINSFSSKGKTF 377
GN ++ P V D Q + + + K
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEM 248
Query: 378 PLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQ-----SFDGFNEVHKAGAE 432
P++ +D G D + KGKI + + D + KAGA
Sbjct: 249 PVLSTNRFEPN--KAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAV 306
Query: 433 GSVSLNDVEFN---KVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA 489
G + ++ + ++ +V +PA ++ + + + T A + + + +
Sbjct: 307 GVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNA---TPKVLPTASG 363
Query: 490 PVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549
++ FSS G +KPDI+APG DIL++ + K+ +SGTSM
Sbjct: 364 TKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSM 408
Query: 550 SCPHAAGVAAYVKSFHPDWSPSA--------IKSAIMTTAWPMNSSKNKDAE--FAFGSG 599
S P AG+ ++ + P K +M++A + K G+G
Sbjct: 409 SAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAG 468
Query: 600 HINPVEAVNPGLVYETFEQDYIIMLCSMGY--DERNIGKISGNISTCPKGSDKATPKDLN 657
++ +A + ++D + D+ + N S P++L
Sbjct: 469 AVDAKKASAATMYV--TDKDNTSSKVHLNNVSDKFEVTVNVHNKSDK--------PQELY 518
Query: 658 YPSMAAQVSPGKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEK 717
Y + P+ + T A +SK V++ + S L +
Sbjct: 519 YQATVQTDKVDGKHFALAPKVLYETSWQKITIPAN---SSKQVTVPIDASRFSKDLLAQM 575
Query: 718 KSFSV 722
K+
Sbjct: 576 KNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 84/479 (17%), Positives = 144/479 (30%), Gaps = 95/479 (19%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ + +IDSG G N + +
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGTG-------------NW 56
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
+ HGTH A T A N GV G +A I KV +
Sbjct: 57 YQPGNNNAHGTHVAGTIAAIANNE------GVV-GVMPN--QNANIHIVKVFNEAGWGYS 107
Query: 269 TAILGAFDDAI-ADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
++++ A D + + G +++T+SLGG + ++ + GVL + +AGN+G
Sbjct: 108 SSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGDS 163
Query: 328 IGSTVSVAPWLMSVAASN-TDRL--------FVDKVVLGSG---QTLVGYSINSFSSKGK 375
S + +MSVAA + V+ G VG + + G
Sbjct: 164 SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGG 223
Query: 376 T---FPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAE 432
V + P + + P +
Sbjct: 224 QSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVG 283
Query: 433 ---GSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA 489
S + ++ V N +L + + +V A
Sbjct: 284 NQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDIT--VPSVSV--DRA 339
Query: 490 PVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSM 549
+A + G + +S G + +GTSM
Sbjct: 340 TGLALKAKLGQS--------TTVSNQGNQ---------------------DYEYYNGTSM 370
Query: 550 SCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
+ PH +GVA V S+HP+ S S +++A+ TA ++ + + G G IN V A
Sbjct: 371 ATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN---QTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+ DFSSRGP + LKP++ APG I+AA + ++ D + GT+M+
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGL 611
PH AG+AA + HP W+P +K+A++ TA + + D A+G+G +N +A
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIAD--IAYGAGRVNAYKAAYYDN 420
Query: 612 VYETFEQDY 620
+ Y
Sbjct: 421 YAKLTFTGY 429
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 65/327 (19%), Positives = 113/327 (34%), Gaps = 84/327 (25%)
Query: 88 LVRSYKRSFNGFAAKLTDHERQKLASME-----------GVVSVFPSRTLQLHTTRSWDF 136
+ +Y A K+ + +A + GV + +++
Sbjct: 62 IKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETE--- 117
Query: 137 MGLNQSITRKRSVE--------SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGG 188
GL++S + + S I +G+ID+GI +G G
Sbjct: 118 -GLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDL------------QGKVIGW 164
Query: 189 RNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGG 248
+F T D GHGTH AS A+G G +G
Sbjct: 165 VDFVNGK---------------TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGM 202
Query: 249 VPSARIAAYKVCSPELGCAETAILG----AFDDAIADGVDIITISLGGQNTLNFTQDVI- 303
P A++ KV + + + + I+ A + G+ +I +SLG + + T +
Sbjct: 203 APGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQ 262
Query: 304 AIGSFHAMAKGVLTLHSAGNSGPFIGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQT 361
A+ + A G++ + +AGNSGP + S A +++V A +
Sbjct: 263 AVNN--AWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYD------------- 307
Query: 362 LVGYSINSFSSKGKTFPLVDGMDVSRP 388
I FSS+G T +V P
Sbjct: 308 ----VITDFSSRGPTADNRLKPEVVAP 330
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FSS GP + D+ APGV I + K+ +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTL-------------PGNKYGAYNGTSMAS 224
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
PH AG AA + S HP+W+ + ++S++ T + S F +G G IN A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 58/238 (24%), Positives = 86/238 (36%), Gaps = 71/238 (29%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S++ V VIDSGI GG + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV--------------AGGASMVPSE--------------T 55
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
N +D HGTH A T A N G GV PSA + A KV +
Sbjct: 56 NPFQDNNSHGTHVAGTVAALNN----------SIGVL--GVAPSASLYAVKVLGADGSGQ 103
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
+ I+ + AIA+ +D+I +SLGG + + + A+A GV+ + +AGN G
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTS 159
Query: 328 IGSTV----SVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381
S+ P +++V A ++ SFSS G P +D
Sbjct: 160 GSSSTVGYPGKYPSVIAVGAVDSSN-----------------QRASFSSVG---PELD 197
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FSS G + ++ APG + + + + ++GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTY-------------PTNTYATLNGTSMAS 223
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
PH AG AA + S HP+ S S +++ + +TA + SS F +G G IN A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 74/239 (30%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+++ V V+D+GI + GG +F
Sbjct: 24 ANVKVAVLDTGIQASHPDLNV--------------VGGASFVAGE--------------- 54
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
D GHGTH A T A N G GV PS + A KV + +
Sbjct: 55 AYNTDGNGHGTHVAGTVAALDN----------TTGVL--GVAPSVSLYAVKVLNSSGSGS 102
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
+ I+ + A +G+D+I +SLGG + + + +A A+GV+ + +AGNSG
Sbjct: 103 YSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNS 158
Query: 328 IGSTVSV-----APWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381
GST ++ +++V A +++ + SFSS G ++
Sbjct: 159 -GSTNTIGYPAKYDSVIAVGAVDSNS-----------------NRASFSSVG---AELE 196
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 9e-22
Identities = 42/246 (17%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
V ++SR P + APG I + + K +++GTSM+
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASVPQFTMS-----------KSQLMNGTSMAA 465
Query: 552 PHAAGVAA----YVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
PH AG A +K + ++SP +IK AI TA + FA G G +N +A
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDP----FAQGHGLLNVEKAF 521
Query: 608 NPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSP 667
+ + + + ++ + + + +
Sbjct: 522 EHLTEHRQSKDNM----------------LRFSVRVGNNADKGIHLRQGVQRN-SIDYNV 564
Query: 668 GKSFTINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGK 727
+ N + ++ + V L +S +V V
Sbjct: 565 YIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQ---CGAFLD--LSYGTRSIAVRVDPT 619
Query: 728 GLPNGA 733
GL G
Sbjct: 620 GLQPGV 625
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 4e-20
Identities = 40/203 (19%), Positives = 78/203 (38%), Gaps = 24/203 (11%)
Query: 198 IGARYYTTDDISG-NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAA 256
+ D+ + HGTH +S ASGN + G P+A+I +
Sbjct: 250 LSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVS 300
Query: 257 YKVCSPELGCAET--AILGAFDDAI-----ADGVDIITISLGGQNTLNFTQDVIAIGSFH 309
+ LG ET A++ A + +D+I +S G + + + + +
Sbjct: 301 MTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEV 360
Query: 310 AMAKGVLTLHSAGNSGPFIGSTVSVA----PWLMSVAASNTDRLFVDKVVLGSGQTLVGY 365
GV+ + SAGN GP + + + P L+ V A + + + + +
Sbjct: 361 VNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQ---MMEAEYAMREKLPG 417
Query: 366 SINSFSSKGKTFPLVDGMDVSRP 388
++ +++S+ G+ V P
Sbjct: 418 NVYTWTSRDPCIDGGQGVTVCAP 440
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FS G DI APGV++ + + + + ++GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTY-------------PGSTYASLNGTSMAT 218
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
PH AG AA VK +P WS I++ + TA + S+ +GSG +N A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN------LYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 69/234 (29%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + V V+D+GI + + +GG +F
Sbjct: 24 SGVKVAVLDTGISTHPD-LNI--------------RGGASFVPGE--------------- 53
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
+ +D GHGTH A T A N G GV PSA + A KV +
Sbjct: 54 PSTQDGNGHGTHVAGTIAALNN----------SIGVL--GVAPSAELYAVKVLGASGSGS 101
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
++I + A +G+ + +SLG + + + A ++GVL + ++GNSG
Sbjct: 102 VSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAG 157
Query: 328 IGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381
S + M+V A++ + + SFS G +D
Sbjct: 158 SISYPARYANAMAVGATDQNN-----------------NRASFSQYG---AGLD 191
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 480 STEAVKDSEAPVVADFSSRGP----NEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535
+ E V+ + VAD+SSRG + V +ISAPG + + +
Sbjct: 191 ALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY----------- 239
Query: 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDA--- 592
+N +SGTSM+ PH +G+AA + + +P S + ++S + A ++ A
Sbjct: 240 --NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG 297
Query: 593 -EFAFGSGHIN 602
++A G G
Sbjct: 298 DDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 55/243 (22%), Positives = 81/243 (33%), Gaps = 57/243 (23%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S I + V+D+G+ + ++FT
Sbjct: 26 SGINIAVLDTGVNTSHPDL------------VNNVEQCKDFTGA-----------TTPIN 62
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCAET 269
N+ D GHGTH A TA + D G GV P A + AYKV
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSD------QAGIY--GVAPDADLWAYKVLLDSGSGYSD 114
Query: 270 AILGAFDDAIADGV-----DIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
I A A II++SLG + + +A +KGVL + +AGNS
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNS 170
Query: 325 GPFIGSTVS---VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVD 381
G T+ P ++VAA + Y + +SS+G D
Sbjct: 171 GYS-QGTIGYPGALPNAIAVAALENVQ------------QNGTYRVADYSSRGYISTAGD 217
Query: 382 GMD 384
+
Sbjct: 218 YVI 220
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 94.0 bits (233), Expect = 4e-20
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 491 VVADFSSRGPNEIVPDILKPDISAPGVDILAAF-----SPLGAVSDDPEDKRQAKFNVVS 545
VA FSSR + APGV IL+ +++ ++
Sbjct: 327 RVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 546 GTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVE 605
GTSM+ PH GV A + P+ P I+ + TA+ N + G G +
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDH---DTGYGLVKLDA 435
Query: 606 AVN 608
A+
Sbjct: 436 ALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 50/206 (24%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
++IIV V+D+G+ +G G + + +G
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDE----------ELPAG 191
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
+ GTH A T A + G+G G P A+I +
Sbjct: 192 TDSSYGGSAGTHVAGTIAAKKD----------GKGIV-GVAPGAKIMPIVIFDDPALVGG 240
Query: 269 T------AILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAG 322
+ A G ++ S GG ++ +AM GV+ + SAG
Sbjct: 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAG 296
Query: 323 NSGPFIGSTVSV---APWLMSVAASN 345
N+ S P ++ VAA +
Sbjct: 297 NNTS--DSHHQYPAGYPGVIQVAALD 320
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
FS+ G N K I APG +IL P + + +GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEIL---------GAQPCTEEPVRL---TGTSMAA 295
Query: 552 PHAAGVAAYVKSFH----PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
P G++A + S A+++A++ TA P + ++ E G +N A+
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPER-CLRGFVNIPGAM 354
Query: 608 N 608
Sbjct: 355 K 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 35/253 (13%), Positives = 65/253 (25%), Gaps = 54/253 (21%)
Query: 150 ESDIIVGVIDSGIWPESESFSDEGFGPAPKKWK--GACKGGRNFTCNNKIIGARYYTTDD 207
+ I + +ID F W ++ I +
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEK 107
Query: 208 ISG--------NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYK 258
+ H H ST G E G+ P+ R+
Sbjct: 108 EEALEAVIPDTKDRIVLNDHACHVTSTIVGQE---------HSPVF--GIAPNCRVINMP 156
Query: 259 VCSPELG-----CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVI--AIGSFHAM 311
+ G + + A D A+ G +II + + ++++ AI
Sbjct: 157 QDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKK--CQ 214
Query: 312 AKGVLTLHSAGNSGPFIGSTVSV---APWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368
VL + GN+ + + P ++V A+ D +
Sbjct: 215 DNNVLIVSPTGNNS---NESWCLPAVLPGTLAVGAAKVDG-----------------TPC 254
Query: 369 SFSSKGKTFPLVD 381
FS+ G
Sbjct: 255 HFSNWGGNNTKEG 267
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 4e-19
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 31/151 (20%)
Query: 465 YSYLKSTKKPEANILS-------TEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517
Y + S K + ++ + S G N + DI+APG
Sbjct: 202 YHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQ 254
Query: 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAI 577
+I P+ K SGTS + +GV A + S +P + + +K +
Sbjct: 255 NIT---------FLRPDAK----TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTL 301
Query: 578 MTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
+ +A S +K +N +A++
Sbjct: 302 LESADKYPSLVDKV----TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 41/255 (16%), Positives = 70/255 (27%), Gaps = 74/255 (29%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ ++V V+DSG+ + +FT +
Sbjct: 44 TPVVVSVVDSGV----AFIGG---------LSDSEFAKFSFTQDG----------SPFPV 80
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVC----SPELGC 266
+ + HGT AS + G+ G P A I++ +V
Sbjct: 81 KKSEALYIHGTAMASLIASRY-------GIY-----GVYPHALISSRRVIPDGVQDSWIR 128
Query: 267 AETAILGAFDDAIADGVDIITISLGGQNT---LNFTQDVIAIGSFHAMAKGVLTLHSAGN 323
A +I+ II IS G + +T+ + L + + GN
Sbjct: 129 AIESIMS-NVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGN 183
Query: 324 SG-----------------PFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYS 366
G + S ++ VAA R V+ G
Sbjct: 184 DGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHG--------G 235
Query: 367 INSFSSKGKTFPLVD 381
+ S G + VD
Sbjct: 236 GITGSRFGNNW--VD 248
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 6e-19
Identities = 52/243 (21%), Positives = 77/243 (31%), Gaps = 46/243 (18%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
IV V D+G+ +D A + KI +
Sbjct: 22 QGQIVAVADTGLDTGR---NDSSMHEAFR---------------GKITALYALGRTN--- 60
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA-- 267
A D GHGTH A + GN G+ G+ P A + + G
Sbjct: 61 -NANDTNGHGTHVAGSVLGN------------GSTNKGMAPQANLVFQSIMDSGGGLGGL 107
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
+ + F A + G I T S G +T D + + + L +AGN GP
Sbjct: 108 PSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPN 166
Query: 328 IGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDV 385
G+ + A ++V A+ R + FSS+G T DV
Sbjct: 167 GGTISAPGTAKNAITVGATENLRPSFGSYADNINH------VAQFSSRGPTKDGRIKPDV 220
Query: 386 SRP 388
P
Sbjct: 221 MAP 223
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-17
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
VA FSSRGP + +KPD+ APG IL+A S L S + +K+ + GTSM+
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANH-DSKYAYMGGTSMAT 258
Query: 552 PHAAGVAAYVKSFHPDW-----SPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
P AG A ++ PS +K+A++ A + G G + ++
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN---GNQGWGRVTLDKS 315
Query: 607 VNPGLVYET 615
+N V E+
Sbjct: 316 LNVAYVNES 324
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-18
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQA---------KFN 542
+++FS+ G N DI+APG + + ++
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 543 VVSGTSMSCPHAAGVAAYVKS-FHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHI 601
+GT+++ P +G A + +H + P + N+ +G G +
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR----YGHGEL 457
Query: 602 NPVEAVN 608
+ +A+N
Sbjct: 458 DVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 46/212 (21%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
++ + +ID+G+ + +N N G T D+
Sbjct: 146 ANTKIAIIDTGVMKNHDDL-------KNNFS----TDSKNLVPLNGFRGTEPEETGDVHD 194
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV----PSARIAAYKVCSPELGC 266
D +GHGT + S N G + P+ + Y+V +
Sbjct: 195 --VNDRKGHGTMVSGQTSAN----------------GKLIGVAPNNKFTMYRVFGSK-KT 235
Query: 267 AETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSF------------HAMAKG 314
+ A A DG +I IS+G L+ +A K
Sbjct: 236 ELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK 295
Query: 315 VLTLHSAGNSGPFIGSTVSVAPWLMSVAASNT 346
+ + +AGN G + +
Sbjct: 296 SIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV 327
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
++DF++ + DI APGV I + + + + +SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTY-------------LDSGYAELSGTAMAA 253
Query: 552 PHAAGVAAYVKSFHPD-----WSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEA 606
PH AG A + + D S + I + ++ A P+ + + G ++ VE
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE---GNGFLTLDLVER 310
Query: 607 V 607
+
Sbjct: 311 I 311
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 50/243 (20%), Positives = 76/243 (31%), Gaps = 69/243 (28%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ I+GVID+G + GG N T T
Sbjct: 41 AGQIIGVIDTGCQVDHPDL------------AERIIGGVNLT-----------TDYGGDE 77
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCAET 269
D GHGTH A T + G G GV P A + K S +
Sbjct: 78 TNFSDNNGHGTHVAGTVAAA--------ETGSGVV--GVAPKADLFIIKALSGDGSGEMG 127
Query: 270 AILGAFDDAI------ADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGN 323
I A A+ + + IIT+SLGG D + +A++ V + +AGN
Sbjct: 128 WIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGN 183
Query: 324 SGPFIGSTVSV-----APWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFP 378
G T +++V A + D ++ F++
Sbjct: 184 EGDGREDTNEFAYPAAYNEVIAVGAVDFDL-----------------RLSDFTNTN---E 223
Query: 379 LVD 381
+D
Sbjct: 224 EID 226
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 45/229 (19%), Positives = 73/229 (31%), Gaps = 62/229 (27%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + VID+G+ G G +F N+
Sbjct: 31 SGQEIAVIDTGVDYTHPDL------------DGKVIKGYDFVDND--------------- 63
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
D+ HGTH A A N G A G+ P+ RI A +
Sbjct: 64 YDPMDLNNHGTHVAGIAAAETNN---------ATGIA--GMAPNTRILAVRALDRNGSGT 112
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
+ I A A G ++I +SLG ++ + +A KG + + +AGN+G
Sbjct: 113 LSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSS 168
Query: 328 IGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKT 376
+ +++V A + + SFS+ G
Sbjct: 169 TTFEPASYENVIAVGAVDQYD-----------------RLASFSNYGTW 200
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 28/117 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+ G D+ APGVDI+ S ++ + +SGTSM+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIV---------STITGNR----YAYMSGTSMAS 229
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
PH AG+AA + S + I+ AI TA ++ + F G IN AV
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGT-----YFKYGRINSYNAVT 279
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 28/117 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+ FS+ G D++APG I S P + +SGTSM+
Sbjct: 190 KSSFSTYGSW--------VDVAAPGSSIY---------STYPTST----YASLSGTSMAT 228
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
PH AGVA + S S S I++AI TA ++ + + G +N +AV
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 45/200 (22%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + ++D+G+ G GG +F N+
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFVDND--------------- 62
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-PSARIAAYKVCSPELGCA 267
+T ++ GHGTH A A N G A G P A I A +V
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNN---------STGIA--GTAPKASILAVRVLDNSGSGT 111
Query: 268 ETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF 327
TA+ A G +I++SLGG + Q + +A KG + + +AGN+G
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNT 167
Query: 328 IGSTVSVAPWLMSVAASNTD 347
+ + ++VA+++ +
Sbjct: 168 APNYPAYYSNAIAVASTDQN 187
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 39/130 (30%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R P ++SAPGVDIL S P+D + + GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDIL---------STYPDDS----YETLMGTAMAT 249
Query: 552 PHAAGVAAYVKSFH-------------PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGS 598
PH +GV A +++ + D S + ++ + TA + + +G
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGY 306
Query: 599 GHINPVEAVN 608
G + AV
Sbjct: 307 GVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 59/219 (26%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S I V V+D+G+ + +
Sbjct: 29 SVIQVAVLDTGVDYDHPDL------------AANIAWCVSTLRGK----------VSTKL 66
Query: 211 NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268
D GHGTH T A N G G P +I + +V +
Sbjct: 67 RDCADQNGHGTHVIGTIAALNN----------DIGVV-GVAPGVQIYSVRVLDARGSGSY 115
Query: 269 TAILGAFDDAIAD--------------------GVDIITISLGGQNTLNFTQDVIAIGSF 308
+ I + AI ++I++SLGG ++ D+I
Sbjct: 116 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII---- 171
Query: 309 HAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
A G++ + ++GN G S + P +++V A +++
Sbjct: 172 QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 210
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 22/120 (18%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FS+ G + D++APG DIL+ V ++ ++GTSM+ P
Sbjct: 235 ASFSNYGVD--------VDLAAPGQDILST------VDSGTRRPVSDAYSFMAGTSMATP 280
Query: 553 HAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
H +GVAA V S + + +P+ +K +++T P N ++ A GSG ++ AVN
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 41/230 (17%), Positives = 69/230 (30%), Gaps = 63/230 (27%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+++V V+D+GI + G +F N++I D
Sbjct: 32 QNVVVAVVDTGILHHRD-------------LNANVLPGYDFISNSQISLDGDGRDADPFD 78
Query: 211 -----------------NTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV-P 250
D HG+H A T A N G A GV
Sbjct: 79 EGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNN---------RIGVA--GVAY 127
Query: 251 SARIAAYKVCSPELGCAETAILG---------AFDDAIADGVDIITISLGGQNTLNFT-Q 300
A++ + G G A + +I +SLG ++ Q
Sbjct: 128 GAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQ 187
Query: 301 DVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSV---APWLMSVAASNTD 347
+I A G L + +AGN ++ + ++SV A+ +
Sbjct: 188 TMID----RATRLGALVVVAAGNEN--QNASNTWPTSCNNVLSVGATTSR 231
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 39/130 (30%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+A FS+R P ++SAPGVDIL S P+D + + GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDIL---------STYPDDS----YETLMGTAMAT 324
Query: 552 PHAAGVAAYVKSFH-------------PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGS 598
PH +GV A +++ + D S + ++ + TA + + +G
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGY 381
Query: 599 GHINPVEAVN 608
G + AV
Sbjct: 382 GVVRAALAVQ 391
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 51/299 (17%), Positives = 87/299 (29%), Gaps = 78/299 (26%)
Query: 88 LVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQLHTTRSWDF----------- 136
+V +K + + KL M GV V L SW
Sbjct: 26 IVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIP 84
Query: 137 -----MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNF 191
+ + S I V V+D+G+ + +
Sbjct: 85 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL------------AANIAWCVST 132
Query: 192 TCNNKIIGARYYTTDDISGNTARDIQGHGTHTAST--ASGNEVKDASFFGVGQGTARGGV 249
D GHGTH T A N G GV
Sbjct: 133 LRGK----------VSTKLRDCADQNGHGTHVIGTIAALNN----------DIGVV--GV 170
Query: 250 -PSARIAAYKVCSPELGCAETAILGAFDDAIAD--------------------GVDIITI 288
P +I + +V + + I + AI ++I++
Sbjct: 171 APGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISM 230
Query: 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTD 347
SLGG ++ D+I A G++ + ++GN G S + P +++V A +++
Sbjct: 231 SLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 285
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
+ FS+ G + DI APG I ++ S+ N +SGTSM+ P
Sbjct: 188 SSFSNYGT--CL------DIYAPGSSITSS----WYTSNS-------ATNTISGTSMASP 228
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AGVAA +P+ SP+ + + + T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 51/201 (25%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + VID+G+ F G G +F N
Sbjct: 31 SGVTAFVIDTGVLNTHNEFG------------GRASSGYDFIDN---------------D 63
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
A D GHGTH A T G+ +GV + + +V + + +
Sbjct: 64 YDATDCNGHGTHVAGTIGGST------YGVA--------KNVNVVGVRVLNCSGSGSNSG 109
Query: 271 ILGAFDDAIADGV--DIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
++ + + + +SLGG + V A A+A G+ + +AGN
Sbjct: 110 VIAGINWVKNNASGPAVANMSLGGGASQATDDAVNA-----AVAAGITFVVAAGNDNSN- 163
Query: 329 GSTVSVA--PWLMSVAASNTD 347
S A ++V ++ ++
Sbjct: 164 ACNYSPARAADAITVGSTTSN 184
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
+ FS+ G V D+ APG I +A G +SGTSM+ P
Sbjct: 186 SSFSNWGS--CV------DLFAPGSQIKSA-WYDGGY------------KTISGTSMATP 224
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AGVAA + +P + + + A
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 51/201 (25%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ VID+G+ E F G G +F N
Sbjct: 29 FGVTAYVIDTGVNNNHEEFG------------GRSVSGYDFVDN---------------D 61
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
+ D GHGTH A T G++ +GV + I +V S +
Sbjct: 62 ADSSDCNGHGTHVAGTIGGSQ------YGVA--------KNVNIVGVRVLSCSGSGTTSG 107
Query: 271 ILGAFDDAIADGV--DIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328
++ D + + +SLGG + V A+ GV + +AGNS
Sbjct: 108 VISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQG-----AIQSGVSFMLAAGNSNAD- 161
Query: 329 GSTVS--VAPWLMSVAASNTD 347
S P ++V ++ +
Sbjct: 162 ACNTSPARVPSGVTVGSTTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
A FS+ G V D+ APG I +A SD ++GTSM+ P
Sbjct: 186 ASFSNYGS--CV------DLFAPGASIPSA----WYTSDT-------ATQTLNGTSMATP 226
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AGVAA +P +P+++ SAI+ A
Sbjct: 227 HVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 24/145 (16%)
Query: 207 DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGC 266
D G +D GHGTH A T G +GV + + A +V
Sbjct: 58 DALGGNGQDCNGHGTHVAGTIGGVT------YGVA--------KAVNLYAVRVLDCNGSG 103
Query: 267 AETAILGAFDDAIADGVD--IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
+ + ++ D + + +SLGG + V ++A GV+ +AGN
Sbjct: 104 STSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVKN-----SIAAGVVYAVAAGND 158
Query: 325 GPFIGSTVS--VAPWLMSVAASNTD 347
S ++V A+ +
Sbjct: 159 NAN-ACNYSPARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 7e-14
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 493 ADFSSRGPN--EIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMS 550
+ G N V D+ APG DI+ A + F SGTS +
Sbjct: 194 VTLGTLGTNFGRCV------DLFAPGEDIIGA----SSDCST-------CFVSQSGTSQA 236
Query: 551 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AG+AA + S P+ + + ++ ++ +
Sbjct: 237 AAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 48/205 (23%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + V ++D+ I + GR + + + T
Sbjct: 26 SLVEVYLLDTSIQSDHREI-----------------EGRVMVTDFENVPEEDGTRFH--- 65
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
A HGTH A SG + GV A+G A + + +V + + +
Sbjct: 66 RQASKCDSHGTHLAGVVSGRD------AGV----AKG----ASMRSLRVLNCQGKGTVSG 111
Query: 271 ILGAFDDAIAD------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNS 324
L + G ++ + L G + GV+ + +AGN
Sbjct: 112 TLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQR-----LARAGVVLVTAAGNF 166
Query: 325 GPFIGSTVSVA--PWLMSVAASNTD 347
S A P +++V A+N
Sbjct: 167 RDD-ACLYSPASAPEVITVGATNAQ 190
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-13
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
D+ APG DI+ A + F SGTS + H AG+AA + S P+ +
Sbjct: 360 DLFAPGEDIIGA----SSDCST-------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 571 SAIKSAIMTTA 581
+ ++ ++ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-12
Identities = 44/298 (14%), Positives = 88/298 (29%), Gaps = 60/298 (20%)
Query: 66 ETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRT 125
S + LQ ++ + GF K++ + + V + +
Sbjct: 89 SQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 148
Query: 126 LQLHTTRSWDFMGLNQSITRKRSVE--------SDIIVGVIDSGIWPESESFSDEGFGPA 177
+ + W L + + + S + V ++D+ I +
Sbjct: 149 VFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI-------- 196
Query: 178 PKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASF 237
GR + + + T A HGTH A SG +
Sbjct: 197 ---------EGRVMVTDFENVPEEDGTRFH---RQASKCDSHGTHLAGVVSGRD------ 238
Query: 238 FGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVD------IITISLG 291
GV A+G A + + +V + + + L + + ++ + L
Sbjct: 239 AGV----AKG----ASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA 290
Query: 292 GQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS--VAPWLMSVAASNTD 347
G + GV+ + +AGN S AP +++V A+N
Sbjct: 291 GGYSRVLNAACQR-----LARAGVVLVTAAGNFRDD-ACLYSPASAPEVITVGATNAQ 342
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 22/89 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
+ FS+ G +V DI APG I + + + N +SGTSM+ P
Sbjct: 191 STFSNYGR--VV------DIFAPGTSITSTWI-------------GGRTNTISGTSMATP 229
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AG+AAY+ S A+ I T +
Sbjct: 230 HIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 26/123 (21%)
Query: 210 GNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAET 269
+TARD GHGTH A T +GV I KV + +
Sbjct: 61 ASTARDGHGHGTHCAGTIGSKT------WGVA--------KKVSIFGVKVLDDSGSGSLS 106
Query: 270 AILGAFDDAIADGVD-------IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAG 322
I+ D +D + ++SLGG + Q + GV +AG
Sbjct: 107 NIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAAR-----LQSSGVFVAVAAG 161
Query: 323 NSG 325
N
Sbjct: 162 NDN 164
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 493 ADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCP 552
+ FS+ G ++ DI PG DIL+ G+ +SGTSM+ P
Sbjct: 190 SSFSNYGS--VL------DIFGPGTDILST-WIGGST------------RSISGTSMATP 228
Query: 553 HAAGVAAYVKSFHPDWSPSAIKSAIMTTA 581
H AG+AAY+ + + ++ I TA
Sbjct: 229 HVAGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 26/122 (21%)
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
++RD GHGTH A T +GV ++ KV +
Sbjct: 61 YSSRDGNGHGTHCAGTVGSRT------YGVA--------KKTQLFGVKVLDDNGSGQYST 106
Query: 271 ILGAFDDAIADGVD-------IITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGN 323
I+ D +D + + ++SLGG + + + GV+ +AGN
Sbjct: 107 IIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAAR-----LQSSGVMVAVAAGN 161
Query: 324 SG 325
+
Sbjct: 162 NN 163
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 4e-07
Identities = 77/588 (13%), Positives = 164/588 (27%), Gaps = 188/588 (31%)
Query: 69 SQHQSILQEVIGDSSVENV--LVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTL 126
S+ + ++Q+ + + N L+ K + + Q+ + VF
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFA---- 127
Query: 127 QLHTTRSWDFMGLNQSITRKRSVESDIIV-GVIDSGIWPESESFSDEGFGPAPKKW--KG 183
+ + +R ++ L Q++ R ++++ GV+ G G K W
Sbjct: 128 KYNVSRLQPYLKLRQALLELRP-AKNVLIDGVL--------------GSG---KTWVALD 169
Query: 184 ACKGGRNFTC--NNKI--IGARYYTTDD----ISGNTARDIQGHGTHTASTASG-----N 230
C + C + KI + + + + + I + T + +S +
Sbjct: 170 VCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 231 EVKDA--SFFGVGQGTARGGVPSARIAAYK--------VCSPELGCAETAILGAFD---- 276
++ + Y+ V + + AF+
Sbjct: 229 SIQAELRRLL--------------KSKPYENCLLVLLNVQNAK-------AWNAFNLSCK 267
Query: 277 ------DA-IADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLT--LHSAGNSGPF 327
+ D L T + + D ++ K +L L P
Sbjct: 268 ILLTTRFKQVTD-------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 328 IGSTVSVAPWLMS-VAAS---------NTDRLFVDKVVLGSGQTLVGYSINSFSSKGK-- 375
++ P +S +A S N + DK+ T++ S+N
Sbjct: 320 -REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-----TTIIESSLNVLEPAEYRK 373
Query: 376 ------TFPLVDGMDVSRP------CESDF-DPQLCTDGQGCIDSRLAKGKIVICQSFDG 422
FP + + D + + ++L K +V Q +
Sbjct: 374 MFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMV-------VVNKLHKYSLVEKQPKES 424
Query: 423 FNEVH------KAGAEGSVSLNDVEFNKVSSVVSLP---AVALNEDNFNSIYSY----LK 469
+ K E +L+ + + + + D + YS+ LK
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLK 482
Query: 470 STKKPEANILSTEAVKD-------------------SEAPVVADF---------SSRGPN 501
+ + PE L D S + +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 502 EIVPDILK--PD-----ISAPGVDIL--AAFSPLGAVSDDPEDKRQAK 540
+V IL P I + D+L A + A+ ++ +Q +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH--KQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 36/276 (13%), Positives = 74/276 (26%), Gaps = 72/276 (26%)
Query: 484 VKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVD-ILAAFSPLGAVSDDPEDKRQAKFN 542
+ E V +F + V D+ K +S +D I+ S D F
Sbjct: 22 LSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIM--------SKDAVSGTLRLFW 69
Query: 543 VV--SGTSMSCPHAAGVAAYVKSFH-PD--WSPSAIKSAIMTTAWPM---NSSKNK---D 591
+ V +V+ + + S IK+ + +++ D
Sbjct: 70 TLLSKQEE-------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 592 AEFAFGSGHIN---PVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGS 648
+ F +++ P + L E ++ + + GK T
Sbjct: 123 NQ-VFAKYNVSRLQPYLKLRQAL-LELRPAKNVL-IDGVL----GSGK------TW---- 165
Query: 649 DKATPKDLNYPSMAAQVSPGKSFTINFPRTV--TNVGLANSTYKA-KILQN------SKI 699
+A V + N+ NS ++LQ
Sbjct: 166 ------------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 700 VSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIV 735
S ++ + + + + K N +V
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
+S + S G I S D + GTS +
Sbjct: 232 HPPYSEGCSAVMAV----TYSSGSGEYI---------HSSDINGRCSNSH---GGTSAAA 275
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN---------KDAEFAFGSGHIN 602
P AAGV + +P+ + ++ + +A + + + K +G G I+
Sbjct: 276 PLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKID 335
Query: 603 PVEAVNPGLVYET 615
+ + +E
Sbjct: 336 AHKLIEMSKTWEN 348
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 6e-06
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 511 DISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570
+ + V+ D K +GTS S P AAG+ A + + +
Sbjct: 230 LATTYSSGNQ---NEKQIVTTDLRQKCTESH---TGTSASAPLAAGIIALTLEANKNLTW 283
Query: 571 SAIKSAIMTTAWPMNSSK--------NKDAEFAFGSGHINPVEAVNPGLVYET 615
++ ++ T+ P + + + ++G G ++ V + T
Sbjct: 284 RDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTT 336
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 753 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.01 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.92 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.91 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.79 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.61 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.57 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.47 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.9 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 91.56 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 90.05 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 89.49 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 82.99 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 81.08 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-121 Score=1059.70 Aligned_cols=603 Identities=40% Similarity=0.648 Sum_probs=542.6
Q ss_pred cCCCcccccccc--ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccc---cCcceeeeeecC
Q 044745 130 TTRSWDFMGLNQ--SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT---CNNKIIGARYYT 204 (753)
Q Consensus 130 ~~~s~~~~g~~~--~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~---~n~kl~g~~~~~ 204 (753)
++++|+|+|+++ .+|..+.+|+||+|||||||||++||+|.+.+++|+|++|+|.|+.+.+|. ||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 478999999984 699999999999999999999999999999999999999999999999884 999999999994
Q ss_pred -CC-------CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHH
Q 044745 205 -TD-------DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFD 276 (753)
Q Consensus 205 -g~-------~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~ 276 (753)
+. ..+..+++|..||||||||||||+.+++.+++|++.|.+.||||+|+|++||+|+. .||..+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~~i~~Ai~ 159 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN-EGTFTSDLIAAMD 159 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEET-TEECHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCC-CCCCHHHHHHHHH
Confidence 21 23456788999999999999999999999999999999999999999999999998 7799999999999
Q ss_pred HHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEe
Q 044745 277 DAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVL 356 (753)
Q Consensus 277 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~ 356 (753)
||+++|+||||||||.. ...+..+++++++++|.++|++||+||||+|+...++.+.+||+|+|||++.||.|...+.+
T Consensus 160 ~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 160 QAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEe
Confidence 99999999999999987 46778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccc--cccEEEEee-----cchhHHHHhc
Q 044745 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLA--KGKIVICQS-----FDGFNEVHKA 429 (753)
Q Consensus 357 ~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~--~gkiv~~~~-----~~k~~~~~~~ 429 (753)
++++.+.|.+++........+|++|.. ....|.+ ..+++.++ +||||+|.| .+|..+++++
T Consensus 239 gng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~--~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~ 306 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSS--EELLSQVENPENTIVICDDNGDFSDQMRIITRAR 306 (649)
T ss_dssp TTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCC--HHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHT
T ss_pred CCCcEEeeeecccCcccCcceeeEecc----------ccccccc--ccccccccccCCcEEEEeCCCccHHHHHHHHHhc
Confidence 999999999999887667789999976 3467988 78888877 999999998 6789999999
Q ss_pred CceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEE-ccceeecCCCCCceecccCCCCCCCCCCCC
Q 044745 430 GAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI-LSTEAVKDSEAPVVADFSSRGPNEIVPDIL 508 (753)
Q Consensus 430 Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~ 508 (753)
|+.|+| ++|+......+.+.+|.++++..+|+.|++|++++.+++++| +..+..+..+.+.++.||||||+...++++
T Consensus 307 Ga~g~i-~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~il 385 (649)
T 3i6s_A 307 LKAAIF-ISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGIS 385 (649)
T ss_dssp CSEEEE-ECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSC
T ss_pred CceEEE-EecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCcc
Confidence 999999 999884444778999999999999999999999999999999 888888888899999999999998778999
Q ss_pred CCceeeCCccEEeccCCCCCCCCCCCCc-ccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 509 KPDISAPGVDILAAFSPLGAVSDDPEDK-RQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 509 KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
||||+|||++|+++++....+.....+. +...|..+||||||||||||++|||||+||+|||++||++||+||++++..
T Consensus 386 KPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~ 465 (649)
T 3i6s_A 386 KPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNT 465 (649)
T ss_dssp SCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTT
T ss_pred CCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCC
Confidence 9999999999999998865443333332 446899999999999999999999999999999999999999999998775
Q ss_pred CCCC---------CCCccCCCCCCccccCCCCeeeeCChhhHHHHHhcCCCCccccceecCCCcc--cCCCCCCCCCCCC
Q 044745 588 KNKD---------AEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNIST--CPKGSDKATPKDL 656 (753)
Q Consensus 588 ~~~~---------~~~~~G~G~in~~~Al~~glv~~~~~~~~~~~lc~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~~l 656 (753)
+.+. ++++||+|+||+.+|++||||||++.+||++|||++||+.++|+.|++.+++ |++ .+.+|
T Consensus 466 g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~-----~~~~l 540 (649)
T 3i6s_A 466 RKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN-----PSADL 540 (649)
T ss_dssp SSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC-----CCCCC
T ss_pred CCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC-----chhhc
Confidence 4432 4689999999999999999999999999999999999999999999998888 975 36799
Q ss_pred CCCcEEeee-CCCCcee--EEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCC
Q 044745 657 NYPSMAAQV-SPGKSFT--INFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGA 733 (753)
Q Consensus 657 n~ps~~~~~-~~~~~~~--~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~ 733 (753)
|||||++.+ +...... ++|+|||||||+.+++|++++++|.| ++|+|+|++|+|++.+|+++|+|||+......+.
T Consensus 541 NyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g-~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~ 619 (649)
T 3i6s_A 541 NYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKN-STISVSPQILVFKNKNEKQSYTLTIRYIGDEGQS 619 (649)
T ss_dssp CCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTT-EEEEEESSEEEECC-CCEEEEEEEEEECCC---C
T ss_pred CCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCC-CEEEEECCEEEEecCCCEEEEEEEEEecccCCCc
Confidence 999999987 4421112 89999999999989999999999999 9999999999998899999999999988656678
Q ss_pred eEEEEEEEEC--CCeEEEcccC
Q 044745 734 IVSTSLMWSD--GNHRVRSPIV 753 (753)
Q Consensus 734 ~~~G~~~~~~--~~~~v~~p~~ 753 (753)
|.||+|+|+| ++|.|||||+
T Consensus 620 ~~fg~l~w~~~~~~h~vrsPi~ 641 (649)
T 3i6s_A 620 RNVGSITWVEQNGNHSVRSPIV 641 (649)
T ss_dssp CCEEEEEEEETTSCCEEEEEEE
T ss_pred eEEEEEEEEcCCCCeEEEEeEE
Confidence 9999999998 9999999985
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-116 Score=1019.11 Aligned_cols=610 Identities=50% Similarity=0.871 Sum_probs=523.5
Q ss_pred cCCCccccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecC-CC--
Q 044745 130 TTRSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT-TD-- 206 (753)
Q Consensus 130 ~~~s~~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~-g~-- 206 (753)
++++|+|+|+++.+|.+..+|+||+|||||||||++||+|.|.++++++.+|+|.|+.+.+|.||+|++++++|. ++
T Consensus 1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~~~ 80 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPI 80 (621)
T ss_dssp CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSSSC
T ss_pred CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCCcc
Confidence 578999999987889999999999999999999999999999999999999999999999999999999999993 33
Q ss_pred -CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcE
Q 044745 207 -DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDI 285 (753)
Q Consensus 207 -~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdV 285 (753)
..+..+++|++||||||||||||+..++.+.+|++.|.++||||+|+|++||+|++ .||..+++++||++|+++|+||
T Consensus 81 ~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~di~~a~~~a~~~g~dV 159 (621)
T 3vta_A 81 SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTDILAAYDDAIADGVDI 159 (621)
T ss_dssp CTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEET-TEECHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecC-CCCCHHHHHHHHHHHHHhCCCE
Confidence 24456789999999999999999999888888988899999999999999999999 8899999999999999999999
Q ss_pred EEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeE
Q 044745 286 ITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGY 365 (753)
Q Consensus 286 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~ 365 (753)
||||||+..+.++..+++++++++|.++|++||+||||+|+...++++.+||+++|++++.+|.+...+.++++..+.+.
T Consensus 160 in~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~ 239 (621)
T 3vta_A 160 ISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGV 239 (621)
T ss_dssp EEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEEB
T ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeeee
Confidence 99999988666778899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee--cchhHHHHhcCceEEEEeccCCcc
Q 044745 366 SINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS--FDGFNEVHKAGAEGSVSLNDVEFN 443 (753)
Q Consensus 366 s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~--~~k~~~~~~~Ga~g~i~~~~~~~~ 443 (753)
+++.. ....+++++..+.............|.+ ..+++.+++|||++|.+ ..+..+....|+.+++ ++++..
T Consensus 240 s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi-~~~~~~- 313 (621)
T 3vta_A 240 SINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTD--KSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVL-MTSNTR- 313 (621)
T ss_dssp CCCCS--CCEEECEEETTTSCCTTCCHHHHTTTCT--TCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEE-EECSCC-
T ss_pred ecccC--CCcccccccccccccccccccccccccc--cccccccccceEEEEecCCChhHHhhhhcceeEEE-EEecCC-
Confidence 77654 3567888888776554444455677888 88999999999999988 5677788889999999 777644
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEecc
Q 044745 444 KVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523 (753)
Q Consensus 444 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 523 (753)
+..+.+.+|...++..++..+..|+..+..+.+++...+.......+.++.||||||+...++++||||+|||++|++++
T Consensus 314 ~~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~ 393 (621)
T 3vta_A 314 DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 393 (621)
T ss_dssp SSCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEEC
T ss_pred CcccccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCCcceEeec
Confidence 33567889999999999999999999999999999555556667789999999999998789999999999999999999
Q ss_pred CCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCc
Q 044745 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINP 603 (753)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~ 603 (753)
+...... .......|..+||||||||||||++|||||+||+|||++||++||+||++++..+.+..+++||+|+||+
T Consensus 394 ~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~~ 470 (621)
T 3vta_A 394 PSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNP 470 (621)
T ss_dssp CSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCCH
T ss_pred Ccccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhcCCCccCH
Confidence 8654222 1233467999999999999999999999999999999999999999999998887776789999999999
Q ss_pred cccCCCCeeeeCChhhHHHHHhcCCCCccccceecCCCcccCCCCCCCCCCCCCCCcEEeeeCCCCceeEEEEEEEEecC
Q 044745 604 VEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVG 683 (753)
Q Consensus 604 ~~Al~~glv~~~~~~~~~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtn~~ 683 (753)
.+|++||||||++.+||+.|||++||+.++++.+++....|+.. ......+||||||++....+...+++|+|||||||
T Consensus 471 ~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg 549 (621)
T 3vta_A 471 LKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVA 549 (621)
T ss_dssp HHHSCCSEECCCCGGGCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECS
T ss_pred HHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCC-CcCcccccccccEEEEccCCCceEEEEEEEEEccC
Confidence 99999999999999999999999999999999999998889875 45567899999999986655557899999999999
Q ss_pred CCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEECCCeEEEcccC
Q 044745 684 LANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSDGNHRVRSPIV 753 (753)
Q Consensus 684 ~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~p~~ 753 (753)
....+|++++++|.| ++|+|+|++|+|++.+|+++|+|||+.. ..+.|+||+|+|+|++|.|||||+
T Consensus 550 ~~~~ty~~~v~~p~g-v~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~ 616 (621)
T 3vta_A 550 PQASTYRAMISAPQG-LTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPIT 616 (621)
T ss_dssp SSCEEEEEEEECCSS-EEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEE
T ss_pred CCCeEEEEEEECCCC-cEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEE
Confidence 999999999999999 9999999999999889999999999864 568899999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-81 Score=756.64 Aligned_cols=525 Identities=22% Similarity=0.269 Sum_probs=416.6
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCc-------------cccCcceeeee
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRN-------------FTCNNKIIGAR 201 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~-------------f~~n~kl~g~~ 201 (753)
++++++ .+|..+.+|+||+|||||||||++||+|.+. ..|++.|..+.. .+||+|+++++
T Consensus 2 d~i~~~-~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~ 74 (926)
T 1xf1_A 2 DPSQVK-TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH 74 (926)
T ss_dssp CTTCCH-HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred CccccH-HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceee
Confidence 457888 8999999999999999999999999999843 467777754322 26999999999
Q ss_pred ecCCCCCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHH
Q 044745 202 YYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAI 279 (753)
Q Consensus 202 ~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~ 279 (753)
+|... ....|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|+. .+ +..+++++||+||+
T Consensus 75 ~~~~~----~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~-~g~~~~~~~i~~Ai~~Ai 145 (926)
T 1xf1_A 75 DYSKD----GKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIV-NGLADYARNYAQAIRDAI 145 (926)
T ss_dssp ESCCC----SCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCC-SCHHHHHHHHHHHHHHHH
T ss_pred ccccC----CCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecC-CCCCCcHHHHHHHHHHHH
Confidence 99543 122389999999999999997554332 245699999999999999987 55 56678999999999
Q ss_pred HCCCcEEEeecCCCCC-CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-------------CCccC--CCCceEEeec
Q 044745 280 ADGVDIITISLGGQNT-LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-------------GSTVS--VAPWLMSVAA 343 (753)
Q Consensus 280 ~~gvdVIn~SlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------------~~~~~--~~p~vitVga 343 (753)
++|+||||||||+... .....++++.++++|.++|++||+||||+|+.. .++.+ .+||+|+|||
T Consensus 146 ~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA 225 (926)
T 1xf1_A 146 NLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVAS 225 (926)
T ss_dssp HTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEE
T ss_pred HhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEec
Confidence 9999999999998632 344567889999999999999999999999632 22333 4799999999
Q ss_pred ccCccceeeeEEe-CCCeEEeeEEeccCC--CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEee-
Q 044745 344 SNTDRLFVDKVVL-GSGQTLVGYSINSFS--SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQS- 419 (753)
Q Consensus 344 ~~~~~~~~~~~~~-~~~~~~~g~s~~~~~--~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~- 419 (753)
++.++.+...+.+ +++....+.+++... ..+..+|+++... .|.+ ..+ .+++||||+|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~--~~~--~~v~Gkivl~~rg 289 (926)
T 1xf1_A 226 YSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKE--DDF--KDVKGKIALIERG 289 (926)
T ss_dssp EBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCST--TTT--TTCTTSEEEEECC
T ss_pred cccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCc--cch--hhcCCeEEEEECC
Confidence 9999999988887 555444444443321 2367899999754 3654 444 589999999998
Q ss_pred ----cchhHHHHhcCceEEEEeccCCcccc----cccccccEEEeehhhHHHHHHHHhcCCCCeEEE-ccceeecCCCCC
Q 044745 420 ----FDGFNEVHKAGAEGSVSLNDVEFNKV----SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI-LSTEAVKDSEAP 490 (753)
Q Consensus 420 ----~~k~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~ 490 (753)
.+|..+++++|+.|+| ++|+..... .....+|...++..++..|.+ .+..++++ ...........+
T Consensus 290 ~~~~~~k~~~~~~~Ga~gvi-~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~ 364 (926)
T 1xf1_A 290 DIDFKDKIAKAKKAGAVGVL-IYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGT 364 (926)
T ss_dssp SSCHHHHHHHHHHTTCSEEE-EECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCS
T ss_pred CCCHHHHHHHHHhCCCcEEE-EEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcc
Confidence 6788999999999999 888765432 456789999999999988874 45556665 233345566678
Q ss_pred ceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHh----hCC
Q 044745 491 VVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKS----FHP 566 (753)
Q Consensus 491 ~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P 566 (753)
.++.||||||+. ++++||||+|||++|+++++.+ .|..+||||||||||||++|||+| .||
T Consensus 365 ~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P 429 (926)
T 1xf1_A 365 KLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYP 429 (926)
T ss_dssp BCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred eeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCC
Confidence 999999999986 9999999999999999999763 799999999999999999999964 599
Q ss_pred CCCHHH----HHHHHHhcCCCCCCCCC--CCCCCccCCCCCCccccCCCCeeeeCChhhHHHHHhcCCCCccccceecCC
Q 044745 567 DWSPSA----IKSAIMTTAWPMNSSKN--KDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDERNIGKISGN 640 (753)
Q Consensus 567 ~ls~~~----ik~~L~~TA~~~~~~~~--~~~~~~~G~G~in~~~Al~~glv~~~~~~~~~~~lc~~~~~~~~~~~~~~~ 640 (753)
+|+|+| ||++||+||+++...+. ..++++||+|+||+.+|++|.+ |||..++++.
T Consensus 430 ~~sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~-------- 490 (926)
T 1xf1_A 430 DMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS-------- 490 (926)
T ss_dssp SSHHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS--------
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc--------
Confidence 999997 99999999998865321 1146899999999999999865 6787665432
Q ss_pred CcccCCCCCCCCCCCCCCCcEEeeeCCCCceeEEEEEEEEecCCCC--eeEEEEEec--CCceEEEEEEcCeEEEe----
Q 044745 641 ISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVGLAN--STYKAKILQ--NSKIVSIKVVPESLSFK---- 712 (753)
Q Consensus 641 ~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtn~~~~~--~~y~~~~~~--~~g~~~v~v~p~~~~~~---- 712 (753)
+|.+..+. .+.+++|||||+|..+ .+|++.+.. |.+ ..++|+|..|.|.
T Consensus 491 -------------------~i~l~~~~---~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~-~~~~v~p~~l~~~~~~~ 547 (926)
T 1xf1_A 491 -------------------KVHLNNVS---DKFEVTVNVHNKSDKPQELYYQATVQTDKVDG-KHFALAPKVLYETSWQK 547 (926)
T ss_dssp -------------------CEEEEEEC---SEEEEEEEEEECSSSCEEEEEEEEEEEEEEET-TEEEEEEEEEEECCCEE
T ss_pred -------------------eeeccccC---ccEEEEEEEEEeCCCceeEEEEEEEEeccCCC-ceEEeccceeEeccCCe
Confidence 23333332 3678999999999754 578887765 556 7888888776655
Q ss_pred ---eCCcEEEEEEEEEecc--------CCCCCeEEEEEEEE--CCCeE-EEcccC
Q 044745 713 ---SLNEKKSFSVTVTGKG--------LPNGAIVSTSLMWS--DGNHR-VRSPIV 753 (753)
Q Consensus 713 ---~~~~~~~~~vt~~~~~--------~~~~~~~~G~~~~~--~~~~~-v~~p~~ 753 (753)
++||+++|+|||++.. .+++.|+||+|+|+ ++.|. ||+||+
T Consensus 548 vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~ 602 (926)
T 1xf1_A 548 ITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYI 602 (926)
T ss_dssp EEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEE
T ss_pred EEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeE
Confidence 4599999999999862 34677999999998 56675 999984
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=551.54 Aligned_cols=362 Identities=27% Similarity=0.413 Sum_probs=292.6
Q ss_pred CceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHh-----------hcCCCeE
Q 044745 50 LMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKL-----------ASMEGVV 118 (753)
Q Consensus 50 ~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L-----------~~~p~V~ 118 (753)
.-.|||.|++... .+...++++.+ ..+++++| ..|+||+++++.+++++| +++|+|+
T Consensus 35 ~~~~iV~~~~~~~-----~~~~~~~~~~~------g~~v~~~~-~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~ 102 (539)
T 3afg_A 35 EVSTIIMFDNQAD-----KEKAVEILDFL------GAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQ 102 (539)
T ss_dssp EEEEEEEESSHHH-----HHHHHHHHHHH------TCEEEEEC-SSSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEE
T ss_pred ceEEEEEECCCCC-----HHHHHHHHHhc------CCeEEEEe-eeeeEEEEEeCHHHHHHHHhhccccccccccCCCee
Confidence 4579999997543 12223344433 36899999 479999999999999999 8999999
Q ss_pred EEEeCceeccccC-----CCccccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCcccc
Q 044745 119 SVFPSRTLQLHTT-----RSWDFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTC 193 (753)
Q Consensus 119 ~v~~~~~~~~~~~-----~s~~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~ 193 (753)
+|++++.+++... .....++++ .+|..+++|+||+|||||||||++||+|.+
T Consensus 103 ~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~gv~VaViDtGid~~Hpdl~~---------------------- 159 (539)
T 3afg_A 103 FIQEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDASHPDLQG---------------------- 159 (539)
T ss_dssp EEEECCEEECC-----------CCBCS-CCBCCSCCCTTCEEEEEESBCCTTSGGGTT----------------------
T ss_pred EEEecccccccCccccCCccccccCcH-hHHhcCCCCCCcEEEEEecCCCCCChHHhC----------------------
Confidence 9999999887542 223345666 899999999999999999999999999974
Q ss_pred CcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHH
Q 044745 194 NNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAIL 272 (753)
Q Consensus 194 n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~ 272 (753)
++++.++|.+. ...+.|++||||||||||+|+... ..|.+.||||+|+|+.+|++++ .| +..++++
T Consensus 160 --~i~~~~d~~~~---~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~-~g~~~~~~i~ 226 (539)
T 3afg_A 160 --KVIGWVDFVNG---KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNG-QGSGSISDII 226 (539)
T ss_dssp --TEEEEEETTTC---CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCT-TSEEEHHHHH
T ss_pred --CEeeeEECCCC---CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecC-CCCcCHHHHH
Confidence 35566677432 145678999999999999998532 2344589999999999999988 55 7889999
Q ss_pred HHHHHHHHC----CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccC
Q 044745 273 GAFDDAIAD----GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNT 346 (753)
Q Consensus 273 ~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~ 346 (753)
+||+||+++ |++|||||||... .....+++..+++++.++|++||+||||+|+...+ .+...+++|+|||++.
T Consensus 227 ~ai~~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~ 305 (539)
T 3afg_A 227 NGVDWAVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305 (539)
T ss_dssp HHHHHHHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT
T ss_pred HHHHHHHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC
Confidence 999999975 8999999999873 34456889999999999999999999999986543 4557899999998542
Q ss_pred ccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHH
Q 044745 347 DRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEV 426 (753)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~ 426 (753)
+
T Consensus 306 ~------------------------------------------------------------------------------- 306 (539)
T 3afg_A 306 Y------------------------------------------------------------------------------- 306 (539)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCC
Q 044745 427 HKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPD 506 (753)
Q Consensus 427 ~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~ 506 (753)
+.++.||||||+. ++
T Consensus 307 ---------------------------------------------------------------~~~a~fSs~Gp~~--~~ 321 (539)
T 3afg_A 307 ---------------------------------------------------------------DVITDFSSRGPTA--DN 321 (539)
T ss_dssp ---------------------------------------------------------------SCBCSSSCCCCCT--TC
T ss_pred ---------------------------------------------------------------cccccccCCCCCC--CC
Confidence 4578999999987 89
Q ss_pred CCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCC
Q 044745 507 ILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNS 586 (753)
Q Consensus 507 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~ 586 (753)
++||||+|||++|+++++..... .......|..++|||||||||||++|||+|++|+|++++||++|++||+++..
T Consensus 322 ~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~ 397 (539)
T 3afg_A 322 RLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKP 397 (539)
T ss_dssp BCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSG
T ss_pred CCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC
Confidence 99999999999999998654211 11112369999999999999999999999999999999999999999998864
Q ss_pred CCCCCCCCccCCCCCCccccCCCC
Q 044745 587 SKNKDAEFAFGSGHINPVEAVNPG 610 (753)
Q Consensus 587 ~~~~~~~~~~G~G~in~~~Al~~g 610 (753)
.+. .+..||+|+||+.+|++..
T Consensus 398 ~~~--~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 398 DEI--ADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp GGC--SBTTTBTCBCCHHHHHTGG
T ss_pred CCC--CccCccCCccCHHHHhhhc
Confidence 332 2688999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=512.49 Aligned_cols=337 Identities=24% Similarity=0.320 Sum_probs=276.4
Q ss_pred CceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceeccc
Q 044745 50 LMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQLH 129 (753)
Q Consensus 50 ~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 129 (753)
+.+|||+|++... .++++++. ..+++++|. .+++|+++++.+++++|+++|+|++|++++.++++
T Consensus 2 ~~~~iV~~~~~~~--------~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 66 (395)
T 2z2z_A 2 TIRVIVSVDKAKF--------NPHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66 (395)
T ss_dssp EEEEEEEECTTTC--------CHHHHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred cEEEEEEECCCcc--------HHHHHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence 3689999998753 22344333 468999995 69999999999999999999999999999998764
Q ss_pred cC--------------CCcc--ccccccccccCCCCCCC--cEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCcc
Q 044745 130 TT--------------RSWD--FMGLNQSITRKRSVESD--IIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNF 191 (753)
Q Consensus 130 ~~--------------~s~~--~~g~~~~~~~~~~~G~G--V~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f 191 (753)
.. ..|. .++++ .+|..+ +|+| |+|||||||||++||+|.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~w~~~~i~~~-~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------------- 125 (395)
T 2z2z_A 67 GKPSWLGGGSTQPAQTIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------------- 125 (395)
T ss_dssp CEECC------CCSCCCCHHHHHTTCG-GGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG-------------------
T ss_pred CCCCcccccccCccccCCcchhhcCHH-HHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc-------------------
Confidence 32 1221 23445 889998 9999 99999999999999999853
Q ss_pred ccCcceeeeeecC-CCCC-CCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCH
Q 044745 192 TCNNKIIGARYYT-TDDI-SGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAE 268 (753)
Q Consensus 192 ~~n~kl~g~~~~~-g~~~-~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~ 268 (753)
+...++|. +... +..++.|+.||||||||||+|..+ + .| +.||||+|+|+.+|++++ .| +..
T Consensus 126 -----~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~n-~---~g-----~~GvAp~a~l~~~kv~~~-~g~~~~ 190 (395)
T 2z2z_A 126 -----IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALNN-D---IG-----VVGVAPGVQIYSVRVLDA-RGSGSY 190 (395)
T ss_dssp -----EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCCS-S---SS-----CCCSSTTCEEEEEECSCT-TSEEEH
T ss_pred -----cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeecC-C---Cc-----eEEECCCCEEEEEEEecC-CCCccH
Confidence 33334442 2100 011246899999999999999731 1 12 389999999999999988 55 788
Q ss_pred HHHHHHHHHHHHC--------------------CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC
Q 044745 269 TAILGAFDDAIAD--------------------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI 328 (753)
Q Consensus 269 ~~i~~ai~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 328 (753)
+++++||+||+++ +++|||||||.... ...+..++.++.++|++||+||||+|...
T Consensus 191 ~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~ 266 (395)
T 2z2z_A 191 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD----DSYLYDMIIQAYNAGIVIVAASGNEGAPS 266 (395)
T ss_dssp HHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC----CHHHHHHHHHHHHTTCEEEEECCSSCCSS
T ss_pred HHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC----CHHHHHHHHHHHHCCCEEEEECCCCCCCC
Confidence 9999999999998 99999999998732 35677788889999999999999999887
Q ss_pred CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccc
Q 044745 329 GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSR 408 (753)
Q Consensus 329 ~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 408 (753)
..++...|++|+|||++.+
T Consensus 267 ~~~Pa~~~~vi~Vga~~~~------------------------------------------------------------- 285 (395)
T 2z2z_A 267 PSYPAAYPEVIAVGAIDSN------------------------------------------------------------- 285 (395)
T ss_dssp CCBTTTSTTEEEEEEECTT-------------------------------------------------------------
T ss_pred CCCccCCCCEEEEEEecCC-------------------------------------------------------------
Confidence 7788889999999986432
Q ss_pred cccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCC
Q 044745 409 LAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSE 488 (753)
Q Consensus 409 ~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 488 (753)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCC--
Q 044745 489 APVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP-- 566 (753)
Q Consensus 489 ~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-- 566 (753)
+.++.||+||| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++|
T Consensus 286 -~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP~VaG~aAll~~~~p~~ 341 (395)
T 2z2z_A 286 -DNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQK 341 (395)
T ss_dssp -SCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCcccCCCC----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHHHHHHHHHHHHHhCccc
Confidence 46788999998 6799999999998764 799999999999999999999999999
Q ss_pred -----------CCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 044745 567 -----------DWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 567 -----------~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 609 (753)
.|++.+||++|++||+++...+ .+..||+|+||+.+|++.
T Consensus 342 ~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g---~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 342 YGKILPVGTFDDISKNTVRGILHITADDLGPTG---WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS---SBTTTBTCBCCHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHHHhhccccCCCC---CCCCccCceeCHHHHHHH
Confidence 9999999999999999987554 368899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=501.44 Aligned_cols=351 Identities=17% Similarity=0.246 Sum_probs=276.6
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhc-CCCeEEEEeCceec
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLAS-MEGVVSVFPSRTLQ 127 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~-~p~V~~v~~~~~~~ 127 (753)
..+.|||++++.. ...+++++. +.++.+.| ..+++|+++++.+++++|++ +|+|++|++++.++
T Consensus 43 ~~~~yiv~~~~~~--------~~~~~~~~~------g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~ 107 (471)
T 3t41_A 43 EELYYSVEYKNTA--------TFNKLVKKK------SLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTC 107 (471)
T ss_dssp CCEEEEEEESCHH--------HHHHHHHHH------TCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSC
T ss_pred CceEEEEEcCCHH--------HHHHHHHhC------CCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceec
Confidence 3467999887633 234444443 45788888 56999999999999999999 99999999998887
Q ss_pred cccCC-------------Ccccccccc--ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccc
Q 044745 128 LHTTR-------------SWDFMGLNQ--SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT 192 (753)
Q Consensus 128 ~~~~~-------------s~~~~g~~~--~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~ 192 (753)
+.... .|.+..+.. .+|..+.+|+||+|||||||||++||+|.+.- |.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~-------- 172 (471)
T 3t41_A 108 ITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS-------- 172 (471)
T ss_dssp BCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC--------
T ss_pred cccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC--------
Confidence 65432 233333322 58999999999999999999999999998641 1110
Q ss_pred cCcceeeeeecCCC----CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCH
Q 044745 193 CNNKIIGARYYTTD----DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAE 268 (753)
Q Consensus 193 ~n~kl~g~~~~~g~----~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~ 268 (753)
..++....|.+. ..+...+.|+.||||||||||+|++. +.||||+|+|+.+|++++ .++..
T Consensus 173 --~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~-~~~~~ 237 (471)
T 3t41_A 173 --KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGS-KKTEL 237 (471)
T ss_dssp --EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSS-SCCCH
T ss_pred --cccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEEEeccC-CCCcH
Confidence 011111112111 11224567899999999999998641 389999999999999988 67899
Q ss_pred HHHHHHHHHHHHCCCcEEEeecCCCCCCC------------CcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC------
Q 044745 269 TAILGAFDDAIADGVDIITISLGGQNTLN------------FTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS------ 330 (753)
Q Consensus 269 ~~i~~ai~~a~~~gvdVIn~SlG~~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------ 330 (753)
+++++||+||++++++|||||||...... ...+.+..++..+.++|++||+||||+|.....
T Consensus 238 ~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~ 317 (471)
T 3t41_A 238 LWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKL 317 (471)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCccccccc
Confidence 99999999999999999999999731111 224567888888999999999999999986532
Q ss_pred ------------ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCc
Q 044745 331 ------------TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLC 398 (753)
Q Consensus 331 ------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C 398 (753)
.+...|++|+|||++.+
T Consensus 318 ~~~~~~~~~~~~~Pa~~~~vitVgA~~~~--------------------------------------------------- 346 (471)
T 3t41_A 318 QREYQGNGEVKDVPASMDNVVTVGSTDQK--------------------------------------------------- 346 (471)
T ss_dssp TTTCCSSSEEEEETTTSTTEEEEEEECTT---------------------------------------------------
T ss_pred ccccccCCceeeccccCCCeEEEEeeCCC---------------------------------------------------
Confidence 55677899999986432
Q ss_pred CCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEE
Q 044745 399 TDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 399 ~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 478 (753)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCcc----------------------EEeccCCCCCCCCCCCCc
Q 044745 479 LSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVD----------------------ILAAFSPLGAVSDDPEDK 536 (753)
Q Consensus 479 ~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~ 536 (753)
+.++.||++||+. |||+|||++ |+++++.+
T Consensus 347 -----------~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~---------- 398 (471)
T 3t41_A 347 -----------SNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG---------- 398 (471)
T ss_dssp -----------SSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS----------
T ss_pred -----------CCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC----------
Confidence 4678899999963 599999987 88888664
Q ss_pred ccccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCC
Q 044745 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPG 610 (753)
Q Consensus 537 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~g 610 (753)
.|..++|||||||||||++|||+|++| .|+|++||++|++||.+.... .+..||+|+||+.+|++..
T Consensus 399 ---~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~~----~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 399 ---RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNK----PFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp ---SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSCC----CHHHHTTCBBCHHHHTTTT
T ss_pred ---CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCC----CcCccccChhCHHHHHHHH
Confidence 699999999999999999999999999 899999999999999987662 3689999999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-58 Score=526.86 Aligned_cols=335 Identities=19% Similarity=0.213 Sum_probs=60.2
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQL 128 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (753)
.+++|||+||+... ......+.+.+.....+.....++++.|++.|+||+++++.+++++|+++|+|++||+++.+..
T Consensus 74 ipg~YIV~lk~~~~--~~~~~~~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~ 151 (692)
T 2p4e_P 74 LPGTYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151 (692)
T ss_dssp EEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCcEEEEECCCCC--HHHHHHHHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence 46799999998775 2233333344443332233456899999999999999999999999999999999999998865
Q ss_pred ccCCCcccccccc-----ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec
Q 044745 129 HTTRSWDFMGLNQ-----SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY 203 (753)
Q Consensus 129 ~~~~s~~~~g~~~-----~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~ 203 (753)
+ ...|.+-.+.. ..|..+.+|+||+|||||||||++||+|.++.. |.+ | ..+
T Consensus 152 ~-~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~-------~---------~~~ 208 (692)
T 2p4e_P 152 Q-SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD-------F---------ENV 208 (692)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc-------c---------ccc
Confidence 2 23344333321 368888999999999999999999999986411 100 0 001
Q ss_pred CCCC--CCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHH
Q 044745 204 TTDD--ISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIA 280 (753)
Q Consensus 204 ~g~~--~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~ 280 (753)
.+.+ .....+.|++||||||||||+|+. .||||+|+|+.+|++++ .| ++.+++++||+|+++
T Consensus 209 ~d~dg~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~-~G~g~~s~ii~aI~~a~~ 273 (692)
T 2p4e_P 209 PEEDGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNC-QGKGTVSGTLIGLEFIRK 273 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecC-CCCCCHHHHHHHHHHHHh
Confidence 0000 001346789999999999999874 79999999999999987 55 788899999999998
Q ss_pred C------CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC-ccCCCCceEEeecccCccceeee
Q 044745 281 D------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS-TVSVAPWLMSVAASNTDRLFVDK 353 (753)
Q Consensus 281 ~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~~~ 353 (753)
+ +++|||||||+. ....+..++.++.++|++||+||||+|.+... .+...|++|+|||++.+...
T Consensus 274 ~~~~~~~g~~VINmSlGg~-----~s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~--- 345 (692)
T 2p4e_P 274 SQLVQPVGPLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcccCCceEEEecCCCC-----CcHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc---
Confidence 6 899999999976 23456667778899999999999999986543 36678999999997643100
Q ss_pred EEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceE
Q 044745 354 VVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEG 433 (753)
Q Consensus 354 ~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g 433 (753)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCcee
Q 044745 434 SVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDIS 513 (753)
Q Consensus 434 ~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~ 513 (753)
...-+.||+|||. |||+
T Consensus 346 -------------------------------------------------------a~~ss~fSn~G~~--------vDI~ 362 (692)
T 2p4e_P 346 -------------------------------------------------------VTLGTLGTNFGRC--------VDLF 362 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------cccccccCCCCCc--------eeEE
Confidence 0001238999984 5999
Q ss_pred eCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCC
Q 044745 514 APGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMN 585 (753)
Q Consensus 514 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~ 585 (753)
|||++|+++++... ..|..++|||||||||||++|||++++|+|+|+|||++|++||.+..
T Consensus 363 APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 363 APGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 99999999987642 46899999999999999999999999999999999999999997643
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=500.82 Aligned_cols=369 Identities=22% Similarity=0.261 Sum_probs=275.0
Q ss_pred ccCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCH----HHHHHhhc--CCCeEEEE
Q 044745 48 NFLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTD----HERQKLAS--MEGVVSVF 121 (753)
Q Consensus 48 ~~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~----~~~~~L~~--~p~V~~v~ 121 (753)
..+++|||+|++... .+++++.+ +.++.+.+ ..+++++++++. +.+++|++ +|+|++||
T Consensus 29 ~~~~~~IV~~k~~~~--------~~~~~~~~------g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~ve 93 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVE 93 (671)
T ss_dssp BCTTEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEE
T ss_pred cCCccEEEEECCCcC--------HHHHHHhc------CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEe
Confidence 357999999997532 23344433 34677777 678999999864 34566764 89999999
Q ss_pred eCceecccc----C--------------------------CCcc--cccccccc-ccCCCCCCCcEEEEEecCCCCCCCC
Q 044745 122 PSRTLQLHT----T--------------------------RSWD--FMGLNQSI-TRKRSVESDIIVGVIDSGIWPESES 168 (753)
Q Consensus 122 ~~~~~~~~~----~--------------------------~s~~--~~g~~~~~-~~~~~~G~GV~VaVIDtGid~~Hp~ 168 (753)
|+..+++.. . ..|. .++++ .+ |+. .+|+||+|||||||||++||+
T Consensus 94 pd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~-~a~w~~-~tG~gV~VAVIDTGVd~~Hpd 171 (671)
T 1r6v_A 94 PSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEE-ASGTNIIVAVVDTGVDGTHPD 171 (671)
T ss_dssp CCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHH-CSCTTCEEEEEESCCBTTSGG
T ss_pred cCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCc-hhhhhc-cCCCCCEEEEEeCCCCCCCcc
Confidence 997654321 0 0111 13333 56 888 899999999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC-CCCCCCCCCCCCcchhhcccccCcccccccccccccceee
Q 044745 169 FSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD-ISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARG 247 (753)
Q Consensus 169 f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~-~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~G 247 (753)
|.++ .+. +...+.+.. ....+..|.+||||||||||||..+ + .| +.|
T Consensus 172 L~~~-------~~~----------------g~~~~~~~~~p~~~d~~d~~gHGThVAGiIAa~~n-g---~g-----v~G 219 (671)
T 1r6v_A 172 LEGQ-------VIA----------------GYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD-G---KG-----IVG 219 (671)
T ss_dssp GTTT-------BCC----------------EEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS-S---SS-----CCC
T ss_pred cccc-------EEe----------------cccccCCCcCCCCCCCccCCCcchhhhhhhhccCC-C---Cc-----eEE
Confidence 9864 111 111111110 0112345678999999999999741 1 12 389
Q ss_pred cccccceeccccccC-----CCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEec
Q 044745 248 GVPSARIAAYKVCSP-----ELG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSA 321 (753)
Q Consensus 248 vAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 321 (753)
|||+|+|+.+|+++. ..+ ...+.+++||+||+++|++|||||||+.. ....+..++.+|.++|++||+||
T Consensus 220 VAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAA 295 (671)
T 1r6v_A 220 VAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSA 295 (671)
T ss_dssp SCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEEC
T ss_pred ECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeC
Confidence 999999999999875 123 45677999999999999999999999862 24577888889999999999999
Q ss_pred CCCCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCC
Q 044745 322 GNSGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTD 400 (753)
Q Consensus 322 GN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~ 400 (753)
||+|... ..++...|++|+|||++.+.
T Consensus 296 GN~g~~~~~~yPA~~~~VItVgA~d~~g---------------------------------------------------- 323 (671)
T 1r6v_A 296 GNNTSDSHHQYPAGYPGVIQVAALDYYG---------------------------------------------------- 323 (671)
T ss_dssp CSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------------------------------
T ss_pred CCCCCCCCccCcccCCCeEEEEEEcCCC----------------------------------------------------
Confidence 9999865 45667889999999865331
Q ss_pred CCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEcc
Q 044745 401 GQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILS 480 (753)
Q Consensus 401 ~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 480 (753)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC-----CCCcccccceeeccccchhHHHH
Q 044745 481 TEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD-----PEDKRQAKFNVVSGTSMSCPHAA 555 (753)
Q Consensus 481 ~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VA 555 (753)
....++.||++||.. ||+|||++|+++++........ ......+.|..++||||||||||
T Consensus 324 -------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VA 388 (671)
T 1r6v_A 324 -------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVT 388 (671)
T ss_dssp -------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHH
T ss_pred -------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHH
Confidence 002378899999976 9999999999998764211000 00112347999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCCeeeeCChhh
Q 044745 556 GVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQD 619 (753)
Q Consensus 556 G~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~glv~~~~~~~ 619 (753)
|++|||+|++|+|++++||++|++||+++...+. +..+|+|+||+.+|++..|..+....+
T Consensus 389 GvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~---d~~~G~G~vna~~Al~~~l~~~~~~~~ 449 (671)
T 1r6v_A 389 GVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPLPTQGGVEE 449 (671)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCCCSSSEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC---CCCcccceeCHHHHhhhhcCCCCCccc
Confidence 9999999999999999999999999998876542 678999999999999987776554433
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=483.19 Aligned_cols=378 Identities=22% Similarity=0.284 Sum_probs=273.5
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|..+ |+||+|||||||||++||+|.+. ++..+++.+. .+...+.|+
T Consensus 11 i~~~-~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~------------------------~~~~~~~~~~-~~~~~~~d~ 62 (441)
T 1y9z_A 11 VGAT-VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGT-GNWYQPGNN 62 (441)
T ss_dssp TTCS-SSCCTT--GGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTS-CCTTCCCSS
T ss_pred cChh-hhhhcC--CCCcEEEEEcCCCCCCChhHhcC------------------------cccCcccCCC-CCCCCCCCC
Confidence 4555 889865 77999999999999999999853 1112222111 112356788
Q ss_pred CCCcchhhcccccCcccccccccccccceeeccccc--ceeccccccCCCC-CCHHHHHHHHHHHHHC-CCcEEEeecCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSA--RIAAYKVCSPELG-CAETAILGAFDDAIAD-GVDIITISLGG 292 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-gvdVIn~SlG~ 292 (753)
.||||||||||+|..+. .| +.||||+| +|+.+|+++. .| +..+++++||+||+++ |++|||||||.
T Consensus 63 ~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~-~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~ 132 (441)
T 1y9z_A 63 NAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNE-AGWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (441)
T ss_dssp CCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEET-TEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred CCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCC-CCCcCHHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 99999999999997521 12 49999995 8999999988 56 7888999999999999 99999999998
Q ss_pred CCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeC---------------
Q 044745 293 QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLG--------------- 357 (753)
Q Consensus 293 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~--------------- 357 (753)
... ...+..++.++.++|++||+||||+|.....++...|++|+|||++.+.....+...+
T Consensus 133 ~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~ 208 (441)
T 1y9z_A 133 SGS----TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (441)
T ss_dssp SCC----BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEE
T ss_pred CCC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeecc
Confidence 722 3456778888999999999999999988777888899999999998775433222222
Q ss_pred ----CCe----EEeeEEeccCCCC--Cceee--EEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeec-----
Q 044745 358 ----SGQ----TLVGYSINSFSSK--GKTFP--LVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSF----- 420 (753)
Q Consensus 358 ----~~~----~~~g~s~~~~~~~--~~~~~--lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~----- 420 (753)
++. .+.|.+++..... ...++ +.|...... .........|......+++.+++|||++|+|.
T Consensus 209 ~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~ 287 (441)
T 1y9z_A 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN-ASATGALAECTVNGTSFSCGNMANKICLVERVGNQGS 287 (441)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCC-CEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSS
T ss_pred ccCCCcccceeecccccccccccCcccccccCCccccccccc-cccccchhccccccccccCCCccccEEEEeccccCcc
Confidence 111 2223333221100 00000 111110000 00011224576533466788999999999883
Q ss_pred -----chhHHHHhcCceEEEEeccCCcc-cc--------cccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecC
Q 044745 421 -----DGFNEVHKAGAEGSVSLNDVEFN-KV--------SSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKD 486 (753)
Q Consensus 421 -----~k~~~~~~~Ga~g~i~~~~~~~~-~~--------~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 486 (753)
+|..+++++|+.|+| ++++... +. ...+.+|.+.++..+|+.|+.|+.+. +
T Consensus 288 ~~~~~~~~~~~~~aGa~gvi-i~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~---------- 352 (441)
T 1y9z_A 288 SYPEINSTKACKTAGAKGII-VYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T---------- 352 (441)
T ss_dssp SCTHHHHHHHHHHTTCSEEE-EECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E----------
T ss_pred cccHHHHHHHHHhcCCeEEE-EEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c----------
Confidence 578899999999999 8887542 11 34567999999999999998876321 0
Q ss_pred CCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCC
Q 044745 487 SEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHP 566 (753)
Q Consensus 487 ~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P 566 (753)
.+ ++.. ...|..+||||||||||||++|||+|+||
T Consensus 353 ------------------------t~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl~~~~p 387 (441)
T 1y9z_A 353 ------------------------TV--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLVWSYHP 387 (441)
T ss_dssp ------------------------EE--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred ------------------------cc--------cccc-------------CCCceeecccccCCcccchHHHHHHHHCC
Confidence 11 1111 14799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCCeeeeCChhhHHHHHhcCCCCc
Q 044745 567 DWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCSMGYDE 631 (753)
Q Consensus 567 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~glv~~~~~~~~~~~lc~~~~~~ 631 (753)
+|+|++||++||+||++++..+. +.+||+|+||+.+|+ ||+.|||.+++.+
T Consensus 388 ~~sp~~ik~~L~~TA~~~~~~g~---~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~~ 438 (441)
T 1y9z_A 388 ECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAK-----------AYLDESCTGPTDP 438 (441)
T ss_dssp TSCHHHHHHHHHHHSBCCSSSSC---BTTTBTCBCCHHHHH-----------HHHHHCTTCC---
T ss_pred CCCHHHHHHHHHhhchhhccCCC---cccccccccCHHHHH-----------HHHHhhhcCCCCC
Confidence 99999999999999999877653 678999999999995 5999999988643
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=465.54 Aligned_cols=302 Identities=20% Similarity=0.216 Sum_probs=203.7
Q ss_pred ccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccc--cCccee----eeeec-CC---
Q 044745 136 FMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFT--CNNKII----GARYY-TT--- 205 (753)
Q Consensus 136 ~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~--~n~kl~----g~~~~-~g--- 205 (753)
..|++ ++|..+..|+||+|||||||||++||+|++....+....|...++...... .+..+. ....+ ..
T Consensus 17 ipG~~-~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (357)
T 4h6x_A 17 IPGLA-DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEA 95 (357)
T ss_dssp STTHH-HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred ccCHH-HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccccc
Confidence 45777 899999999999999999999999999998766666667776555432110 000000 00000 00
Q ss_pred CCCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-----CCHHHHHHHHHHHHH
Q 044745 206 DDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-----CAETAILGAFDDAIA 280 (753)
Q Consensus 206 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a~~ 280 (753)
...+..++.|.+||||||||||+|+.. ..+.||||+|+|+.+|++....+ +...+++++|+||++
T Consensus 96 ~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~ 165 (357)
T 4h6x_A 96 VIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALE 165 (357)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHH
Confidence 001123456788999999999999742 12489999999999999754211 344578899999999
Q ss_pred CCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCe
Q 044745 281 DGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQ 360 (753)
Q Consensus 281 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 360 (753)
.|++|||||||.........+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 166 ~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 232 (357)
T 4h6x_A 166 LGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD------------- 232 (357)
T ss_dssp TTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-------------
T ss_pred cCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-------------
Confidence 9999999999987545556778888999999999999999999998877788888999999986532
Q ss_pred EEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccC
Q 044745 361 TLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDV 440 (753)
Q Consensus 361 ~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~ 440 (753)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEE
Q 044745 441 EFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDIL 520 (753)
Q Consensus 441 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~ 520 (753)
+.++.|||||+.. .||||+|||++|+
T Consensus 233 -------------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~ 258 (357)
T 4h6x_A 233 -------------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEIL 258 (357)
T ss_dssp -------------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEE
T ss_pred -------------------------------------------------CcccccccCCCCC-----CccceeecCCCeE
Confidence 5678899999753 5899999999999
Q ss_pred eccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 044745 521 AAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAF 596 (753)
Q Consensus 521 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~ 596 (753)
++++.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..... .+.+|
T Consensus 259 s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~~~-~~~~~ 325 (357)
T 4h6x_A 259 GAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE-EPERC 325 (357)
T ss_dssp ECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------C
T ss_pred eccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCCCC-Ccccc
Confidence 998775 36788999999999999999999964 57899999999999999988654322 36789
Q ss_pred CCCCCCccccCC
Q 044745 597 GSGHINPVEAVN 608 (753)
Q Consensus 597 G~G~in~~~Al~ 608 (753)
|+|+||+.+|++
T Consensus 326 G~G~vn~~~A~~ 337 (357)
T 4h6x_A 326 LRGFVNIPGAMK 337 (357)
T ss_dssp TTCBCCHHHHHH
T ss_pred eeEEecHHHHHH
Confidence 999999999987
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=434.38 Aligned_cols=261 Identities=28% Similarity=0.352 Sum_probs=215.3
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|+.+..|+||+|||||||||++||+|.++ ++..++|.++. .++.|.
T Consensus 18 i~~~-~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~------------------------~~~~~~~~~~~---~~~~d~ 69 (280)
T 1dbi_A 18 TYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDND---YDPMDL 69 (280)
T ss_dssp GTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTTB---SCCCCS
T ss_pred cCcH-HHHhhcCCCCCCEEEEEeCCcCCCChhhccC------------------------cccceeccCCC---CCCCCC
Confidence 4445 8999998888999999999999999999843 44555663321 346789
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.+|||||||||+|...++. | +.||||+|+|+.+|+++. .+ +..+++++||+||+++|++|||||||...
T Consensus 70 ~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~-~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~- 139 (280)
T 1dbi_A 70 NNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDR-NGSGTLSDIADAIIYAADSGAEVINLSLGCDC- 139 (280)
T ss_dssp SSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred CCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECC-CCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 9999999999999854321 2 389999999999999987 55 78899999999999999999999999872
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
....+..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 140 ---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 188 (280)
T 1dbi_A 140 ---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY---------------------------- 188 (280)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC----------------------------
Confidence 2356788888899999999999999998776777888999999986432
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 189 ----------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~~--------- 217 (280)
T 1dbi_A 189 ----------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITGN--------- 217 (280)
T ss_dssp ----------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETTT---------
T ss_pred ----------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecCCC---------
Confidence 4578899999865 9999999999998753
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||||||++|||++ |++++++||++|++||+++... ...||+|+||+.+|++
T Consensus 218 ----~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~-----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 218 ----RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT-----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp ----EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB-----TTTBSSEECCHHHHHT
T ss_pred ----CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC-----CCcccCCEECHHHHhc
Confidence 799999999999999999999987 8999999999999999998754 4679999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-52 Score=435.57 Aligned_cols=259 Identities=28% Similarity=0.441 Sum_probs=218.3
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|..+++|+||+|+|||||||++||+|+ +...++|.... ..+.|.
T Consensus 11 i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~--------------------------~~~g~~~~~~~---~~~~d~ 60 (274)
T 1r0r_E 11 IKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLN--------------------------VVGGASFVAGE---AYNTDG 60 (274)
T ss_dssp TTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCC--------------------------EEEEEECSTTC---CTTCCS
T ss_pred cCCH-HHHhcCCCCCCCEEEEEcCCCCCCCHhHc--------------------------CCCCccccCCC---CCCCCC
Confidence 4555 89999999999999999999999999995 12233442211 235688
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.||||||||||+|..+ ...+.||||+|+|+.+|+++. .+ +..++++++|+|+++++++|||||||...
T Consensus 61 ~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~~-~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~- 129 (274)
T 1r0r_E 61 NGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNS-SGSGSYSGIVSGIEWATTNGMDVINMSLGGAS- 129 (274)
T ss_dssp SSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCT-TSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-
T ss_pred CCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEECC-CCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC-
Confidence 9999999999999731 112389999999999999987 55 78889999999999999999999999873
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC----CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCC
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI----GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFS 371 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 371 (753)
....+..+++++.++|++||+||||+|... ..++...|++|+||+++.+
T Consensus 130 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------ 182 (274)
T 1r0r_E 130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------------------------ 182 (274)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT------------------------
T ss_pred ---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC------------------------
Confidence 245778888899999999999999999763 3445677899999986422
Q ss_pred CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccc
Q 044745 372 SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSL 451 (753)
Q Consensus 372 ~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 451 (753)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCC
Q 044745 452 PAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSD 531 (753)
Q Consensus 452 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 531 (753)
+.++.||++||.. ||+|||.+|+++++.+
T Consensus 183 --------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~----- 211 (274)
T 1r0r_E 183 --------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYPTN----- 211 (274)
T ss_dssp --------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT-----
T ss_pred --------------------------------------CCcCccCCCCCCc--------eEEeCCCCeEeecCCC-----
Confidence 4578899999954 9999999999998764
Q ss_pred CCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 532 DPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 532 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++.. +..||+|+||+.+|++
T Consensus 212 --------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g~------~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 212 --------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCHHHHTC
T ss_pred --------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCC------CCCcccCccCHHHHhC
Confidence 69999999999999999999999999999999999999999998852 6789999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=432.28 Aligned_cols=258 Identities=29% Similarity=0.417 Sum_probs=220.1
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|..+++|+||+|+|||||| .+||+|+ +...++|... ...+.|.
T Consensus 11 i~~~-~a~~~g~~G~gv~VaViDtGi-~~h~~l~--------------------------~~~~~~~~~~---~~~~~d~ 59 (269)
T 1gci_A 11 VQAP-AAHNRGLTGSGVKVAVLDTGI-STHPDLN--------------------------IRGGASFVPG---EPSTQDG 59 (269)
T ss_dssp TTHH-HHHHTTCSCTTCEEEEEESCC-CCCTTCC--------------------------EEEEEECSTT---CCSCSCS
T ss_pred cCcH-HHHhcCCCCCCCEEEEECCCC-CCCHhhc--------------------------ccCCcccCCC---CCCCCCC
Confidence 4455 899999999999999999999 8999995 1233344221 1335789
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.||||||||||+|..+ ...+.||||+|+|+.+|+++. .+ +..+++++||+|+++++++|||||||...
T Consensus 60 ~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~~-~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~- 128 (269)
T 1gci_A 60 NGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGA-SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS- 128 (269)
T ss_dssp SSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCT-TSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred CCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeECC-CCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC-
Confidence 9999999999999731 112389999999999999987 44 78889999999999999999999999873
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
....+..+++++.++|++||+||||+|.....++...|++|+||+++.+
T Consensus 129 ---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 177 (269)
T 1gci_A 129 ---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN---------------------------- 177 (269)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC----------------------------
Confidence 2356788888899999999999999998877778888999999986432
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 178 ----------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~--------- 206 (269)
T 1gci_A 178 ----------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPGS--------- 206 (269)
T ss_dssp ----------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT---------
T ss_pred ----------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecCCC---------
Confidence 4578899999975 9999999999998763
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+++.. +..||+|+||+.+|++
T Consensus 207 ----~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g~------~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 207 ----TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp ----EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred ----CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCC------CCCcccCccCHHHHcC
Confidence 78999999999999999999999999999999999999999998852 6789999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=432.95 Aligned_cols=261 Identities=31% Similarity=0.439 Sum_probs=218.9
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|..+++|+||+|||||||||++||+|+. ...++|.... .....|.
T Consensus 11 i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~--------------------------~~g~~~~~~~--~~~~~d~ 61 (281)
T 1to2_E 11 IKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV--------------------------AGGASMVPSE--TNPFQDN 61 (281)
T ss_dssp TTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------------------EEEEECCTTC--CCTTCCS
T ss_pred cChH-HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC--------------------------cCCccccCCC--CCCCCCC
Confidence 4455 899999999999999999999999999952 1233342111 1223688
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.+|||||||||+|..+ ...+.||||+|+|+.+|+++. .+ +..++++++|+|+++++++|||||||...
T Consensus 62 ~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~-~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~- 130 (281)
T 1to2_E 62 NSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLGGPS- 130 (281)
T ss_dssp SSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCT-TSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-
T ss_pred CCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeCC-CCCccHHHHHHHHHHHHHCCCcEEEECCcCCC-
Confidence 9999999999999731 112389999999999999987 55 78899999999999999999999999873
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC----CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCC
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI----GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFS 371 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 371 (753)
....+..+++++.++|++||+||||+|... ..++...|++|+|||++.+
T Consensus 131 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------ 183 (281)
T 1to2_E 131 ---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------------------------ 183 (281)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC------------------------
Confidence 245778888899999999999999999763 3456677899999985422
Q ss_pred CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccc
Q 044745 372 SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSL 451 (753)
Q Consensus 372 ~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 451 (753)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCC
Q 044745 452 PAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSD 531 (753)
Q Consensus 452 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 531 (753)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 184 --------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~~~----- 212 (281)
T 1to2_E 184 --------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPGN----- 212 (281)
T ss_dssp --------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETTT-----
T ss_pred --------------------------------------CCcCCcCCCCCCc--------eEEecCCCeEeecCCC-----
Confidence 4578899999965 9999999999998764
Q ss_pred CCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 044745 532 DPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 532 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 609 (753)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++.. +..||+|+||+.+|+++
T Consensus 213 --------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g~------~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 213 --------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTSS
T ss_pred --------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCC------CCCcccceecHHHHhhh
Confidence 68999999999999999999999999999999999999999998852 68899999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=442.77 Aligned_cols=265 Identities=27% Similarity=0.342 Sum_probs=217.0
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC-CCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD-DISGNTARD 215 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~-~~~~~~~~D 215 (753)
++++ .+|..+++|+||+|||||||||++||+|.++ ++..++|..+ ..+.....|
T Consensus 28 i~~~-~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d 82 (327)
T 2x8j_A 28 VEAP-AVWRASAKGAGQIIGVIDTGCQVDHPDLAER------------------------IIGGVNLTTDYGGDETNFSD 82 (327)
T ss_dssp TTHH-HHHHHHGGGTTCEEEEEESCCCTTCTTTGGG------------------------EEEEEECSSGGGGCTTCCCC
T ss_pred cChH-HHHhcCCCCCCCEEEEEcCCCCCCChhHhhc------------------------ccCCccccCCCCCCCCCCCC
Confidence 4555 8999999999999999999999999999843 4445555322 111234578
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHH------CCCcEEEe
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIA------DGVDIITI 288 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~------~gvdVIn~ 288 (753)
+.||||||||||+|..+ ...+.||||+|+|+.+|+++. .| +..+++++||+||++ .+++||||
T Consensus 83 ~~gHGT~VAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~-~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~ 152 (327)
T 2x8j_A 83 NNGHGTHVAGTVAAAET---------GSGVVGVAPKADLFIIKALSG-DGSGEMGWIAKAIRYAVDWRGPKGEQMRIITM 152 (327)
T ss_dssp SSSHHHHHHHHHHCCCC---------SSBCCCSSTTCEEEEEECSCT-TSEECHHHHHHHHHHHHHCCCTTSCCCSEEEE
T ss_pred CCCchHHHHHHHhccCC---------CCCcEeeCCCCEEEEEEeECC-CCCcCHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 99999999999999842 112399999999999999987 55 788999999999999 89999999
Q ss_pred ecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC-----CCccCCCCceEEeecccCccceeeeEEeCCCeEEe
Q 044745 289 SLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI-----GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLV 363 (753)
Q Consensus 289 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 363 (753)
|||... ....+..++.++.++|++||+||||+|... ..++...|++|+|||++.+
T Consensus 153 S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~---------------- 212 (327)
T 2x8j_A 153 SLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD---------------- 212 (327)
T ss_dssp CEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT----------------
T ss_pred CCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC----------------
Confidence 999873 235677888889999999999999999752 3456677999999986532
Q ss_pred eEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcc
Q 044745 364 GYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFN 443 (753)
Q Consensus 364 g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 443 (753)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEecc
Q 044745 444 KVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAF 523 (753)
Q Consensus 444 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~ 523 (753)
+.++.||++||. |||+|||++|++++
T Consensus 213 ----------------------------------------------~~~~~fS~~G~~--------~di~APG~~i~s~~ 238 (327)
T 2x8j_A 213 ----------------------------------------------LRLSDFTNTNEE--------IDIVAPGVGIKSTY 238 (327)
T ss_dssp ----------------------------------------------CCBSCC---CCC--------CSEEEECSSEEEEC
T ss_pred ----------------------------------------------CCCCCccCCCCC--------ceEecCcCceEeec
Confidence 457889999985 49999999999998
Q ss_pred CCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCC
Q 044745 524 SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF-----HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGS 598 (753)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~ 598 (753)
+.+ .|..++|||||||||||++|||+|+ +|.|++.+||++|++||++++.. +..+|+
T Consensus 239 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~~-----~~~~G~ 300 (327)
T 2x8j_A 239 LDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFT-----AQAEGN 300 (327)
T ss_dssp STT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSSC-----HHHHTT
T ss_pred CCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCCC-----CCceee
Confidence 764 6899999999999999999999999 99999999999999999988642 688999
Q ss_pred CCCCccccCC
Q 044745 599 GHINPVEAVN 608 (753)
Q Consensus 599 G~in~~~Al~ 608 (753)
|++|+.+|++
T Consensus 301 G~vd~~~A~~ 310 (327)
T 2x8j_A 301 GFLTLDLVER 310 (327)
T ss_dssp CEECTTHHHH
T ss_pred eEECHHHHHH
Confidence 9999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-51 Score=428.14 Aligned_cols=260 Identities=27% Similarity=0.393 Sum_probs=221.3
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|+.. +|+||+|||||||||++||+|.++ ++..++|...+ ..+.|.
T Consensus 18 i~~~-~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~~---~~~~d~ 68 (279)
T 1thm_A 18 IQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDND---STPQNG 68 (279)
T ss_dssp TTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTTB---SCCCCS
T ss_pred CChH-HHHhcC-CCCCCEEEEEccCCCCCCcchhcC------------------------ccccccccCCC---CCCCCC
Confidence 4455 899887 799999999999999999999853 44555663321 345789
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~ 295 (753)
.+|||||||||+|...++. | +.||||+|+|+.+|+++. .+ ++.+++++||+||+++|++|||||||...
T Consensus 69 ~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~-~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~- 138 (279)
T 1thm_A 69 NGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDN-SGSGTWTAVANGITYAADQGAKVISLSLGGTV- 138 (279)
T ss_dssp SSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred CCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCC-CCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-
Confidence 9999999999999864321 2 389999999999999987 45 78889999999999999999999999873
Q ss_pred CCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCc
Q 044745 296 LNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGK 375 (753)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 375 (753)
..+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 139 ---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 187 (279)
T 1thm_A 139 ---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN---------------------------- 187 (279)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC----------------------------
Confidence 2457788888999999999999999998777778888999999986432
Q ss_pred eeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEE
Q 044745 376 TFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVA 455 (753)
Q Consensus 376 ~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 455 (753)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCC
Q 044745 456 LNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPED 535 (753)
Q Consensus 456 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 535 (753)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 188 ----------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~~--------- 216 (279)
T 1thm_A 188 ----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS--------- 216 (279)
T ss_dssp ----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETTT---------
T ss_pred ----------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCCC---------
Confidence 4578899999865 9999999999998764
Q ss_pred cccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 536 KRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|+||+.+|++
T Consensus 217 ----~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-----~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 217 ----TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ----EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHHH
T ss_pred ----CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-----CccccCCeeCHHHHhc
Confidence 6999999999999999999999 579999999999999999998765 3579999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=431.32 Aligned_cols=265 Identities=22% Similarity=0.247 Sum_probs=212.9
Q ss_pred CCCC-CCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCCCCCCCCcchhh
Q 044745 147 RSVE-SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTARDIQGHGTHTA 224 (753)
Q Consensus 147 ~~~G-~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~~D~~gHGThVA 224 (753)
.++| +||+|||||||||++||+|.+. .+..+++ ... ......|.+|||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~------------------------~~~~~~~~~~~--~~~~d~~~~gHGT~VA 56 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA------------------------DLTVLPTLAPT--AARSDGFMSAHGTHVA 56 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC------------------------EEEECCCSSCC--CCCTTCHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC------------------------eeecCcCCCCC--CCCCCCCCCCccccee
Confidence 3578 6999999999999999999854 1111222 111 1122335679999999
Q ss_pred cccccCcccccccccccccceeecccccceeccccccCCC-CCCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHH
Q 044745 225 STASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPEL-GCAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVI 303 (753)
Q Consensus 225 Giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~ 303 (753)
|||+|+.. ..+.||||+|+|+.+|++.+.. +....+++++|+||++++++|||||||...........+
T Consensus 57 Giiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~ 126 (282)
T 3zxy_A 57 SIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWL 126 (282)
T ss_dssp HHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHH
T ss_pred ehhhccCC----------ceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHH
Confidence 99999752 1238999999999999986522 377888999999999999999999999764344455677
Q ss_pred HHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCC
Q 044745 304 AIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGM 383 (753)
Q Consensus 304 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~ 383 (753)
..++..+.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 127 ~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 170 (282)
T 3zxy_A 127 ENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------------------------ 170 (282)
T ss_dssp HHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT------------------------------------
T ss_pred HHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC------------------------------------
Confidence 88888999999999999999998877778888999999986432
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHH
Q 044745 384 DVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNS 463 (753)
Q Consensus 384 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 463 (753)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCccccccee
Q 044745 464 IYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNV 543 (753)
Q Consensus 464 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 543 (753)
+.++.||+||+. ..||||+|||.+|+++.+.+ .|..
T Consensus 171 --------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~-------------~~~~ 206 (282)
T 3zxy_A 171 --------------------------GHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG-------------GTER 206 (282)
T ss_dssp --------------------------SCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS-------------CEEE
T ss_pred --------------------------CccccccCCCCC-----ccccceeccCcceeeecCCC-------------ceee
Confidence 456789999875 36889999999999998764 6899
Q ss_pred eccccchhHHHHHHHHHHHhhC----CCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 544 VSGTSMSCPHAAGVAAYVKSFH----PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~----P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
++|||||||||||++|||++++ |.++|+|||++|++||++++..... ....+|+|+||+.+|++
T Consensus 207 ~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~~~-~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 207 LSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDAPE-QARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------CGGGTTCBCCHHHHHH
T ss_pred cCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCCCC-ccCceeeeEeCHHHHHH
Confidence 9999999999999999999875 8899999999999999987654221 35789999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-50 Score=428.68 Aligned_cols=278 Identities=28% Similarity=0.352 Sum_probs=223.1
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC-CCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD-ISGNTARD 215 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~-~~~~~~~D 215 (753)
++++ .+|..+++|+||+|||||||||++||+|.+. +...++|.+.. .......|
T Consensus 13 i~~~-~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~------------------------~~~~~~~~~~~~~~~~~~~d 67 (310)
T 2ixt_A 13 IYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------------------VEQCKDFTGATTPINNSCTD 67 (310)
T ss_dssp HHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEESSSSSSCEETCCCC
T ss_pred cCch-hhhhccCCCCCcEEEEEecCCCCCCHHHhhc------------------------ccccccccCCCCCCCCCCCC
Confidence 4555 8999999999999999999999999999853 33445553321 11233568
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCC-----cEEEee
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGV-----DIITIS 289 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gv-----dVIn~S 289 (753)
..||||||||||+|.... ....+.||||+|+|+.+|++++ .+ +..++++++|+|++++++ +|||||
T Consensus 68 ~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~-~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S 139 (310)
T 2ixt_A 68 RNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLD-SGSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (310)
T ss_dssp SSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCT-TSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcC-CCCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence 899999999999987521 1122489999999999999987 55 688999999999999888 999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCC--CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEe
Q 044745 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFI--GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSI 367 (753)
Q Consensus 290 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~ 367 (753)
||... ....+..++.++.++|++||+||||+|... ..++...|++|+|||++...
T Consensus 140 ~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~------------------- 196 (310)
T 2ixt_A 140 LGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ------------------- 196 (310)
T ss_dssp CCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-------------------
T ss_pred CCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-------------------
Confidence 99873 245677888889999999999999999763 44566789999999865210
Q ss_pred ccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccc
Q 044745 368 NSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSS 447 (753)
Q Consensus 368 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 447 (753)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCC--ceecccCCCCCCCC----CCCCCCceeeCCccEEe
Q 044745 448 VVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAP--VVADFSSRGPNEIV----PDILKPDISAPGVDILA 521 (753)
Q Consensus 448 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~--~~a~fSs~GP~~~~----~~~~KPDI~APG~~I~s 521 (753)
..+ .++.||++||.... .++.||||+|||++|++
T Consensus 197 ----------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s 236 (310)
T 2ixt_A 197 ----------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYS 236 (310)
T ss_dssp ----------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEE
T ss_pred ----------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEee
Confidence 002 57889999995321 12359999999999999
Q ss_pred ccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCC----CCCCCccC
Q 044745 522 AFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN----KDAEFAFG 597 (753)
Q Consensus 522 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~----~~~~~~~G 597 (753)
+++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||++.+..+. +..+..+|
T Consensus 237 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~a~~g~d~~~G 303 (310)
T 2ixt_A 237 TWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASG 303 (310)
T ss_dssp ECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTB
T ss_pred ecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccccCCccccc
Confidence 98753 68999999999999999999999999999999999999999998875321 11578999
Q ss_pred CCCCCc
Q 044745 598 SGHINP 603 (753)
Q Consensus 598 ~G~in~ 603 (753)
||++|+
T Consensus 304 ~G~~~v 309 (310)
T 2ixt_A 304 FGFARV 309 (310)
T ss_dssp TCBCCC
T ss_pred cceeec
Confidence 999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=436.45 Aligned_cols=276 Identities=24% Similarity=0.299 Sum_probs=224.3
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeec-CCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYY-TTDDISGNTA 213 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~-~g~~~~~~~~ 213 (753)
++.|++ ++|+....++||+|||||||||++||+|.+. .+....++ .++ ....
T Consensus 6 ~i~G~~-~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~~---~~~~ 58 (306)
T 4h6w_A 6 NIPGLK-KLWSETRGDPKICVAVLDGIVDQNHPCFIGA-----------------------DLTRLPSLVSGE---ANAN 58 (306)
T ss_dssp -CTTHH-HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-----------------------EEEECC-------------
T ss_pred CCcCHH-HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-----------------------cccCCCcccCCC---CCCC
Confidence 345778 8999988889999999999999999999854 12222233 211 1234
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGG 292 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~ 292 (753)
.|..||||||||||+|+.. +.+.||||+|+|+.+|++.+..+ +....++++|+||++++++|||+|||.
T Consensus 59 ~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~ 128 (306)
T 4h6w_A 59 GSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQ 128 (306)
T ss_dssp CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCE
T ss_pred CCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccc
Confidence 4678999999999999742 22489999999999999866333 788889999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCC
Q 044745 293 QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS 372 (753)
Q Consensus 293 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 372 (753)
..........+..++..+.++|++||++|||+|.....++...+++|+|||++.+
T Consensus 129 ~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------------------------- 183 (306)
T 4h6w_A 129 LTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------------------------- 183 (306)
T ss_dssp EESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-------------------------
T ss_pred cccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-------------------------
Confidence 6434445667888888999999999999999998877777888999999986432
Q ss_pred CCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccccc
Q 044745 373 KGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLP 452 (753)
Q Consensus 373 ~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 452 (753)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC
Q 044745 453 AVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532 (753)
Q Consensus 453 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 532 (753)
+.++.||++|+. ..||||+|||++|+++.+.+
T Consensus 184 -------------------------------------~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~~------ 215 (306)
T 4h6w_A 184 -------------------------------------GKPVDFSNWGDA-----YQKQGILAPGKDILGAKPNG------ 215 (306)
T ss_dssp -------------------------------------SCBCSSSCBCHH-----HHHHEEEEECSSEEEECTTS------
T ss_pred -------------------------------------CCccccccccCC-----cCcceeecCCcCcccccCCC------
Confidence 456778999864 35889999999999998764
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF----HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+.. ....||+|+||+.+|++
T Consensus 216 -------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~~-~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 216 -------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTD-DQSRCLMGKLNILDAIE 287 (306)
T ss_dssp -------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTCS-CGGGGTTCBCCHHHHHH
T ss_pred -------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCCC-CCCCcceeecCHHHHHH
Confidence 6999999999999999999999865 69999999999999999998776432 24579999999999987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=433.96 Aligned_cols=265 Identities=25% Similarity=0.357 Sum_probs=221.1
Q ss_pred cccccccccCCCCCC--CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC--CCCCC
Q 044745 137 MGLNQSITRKRSVES--DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD--ISGNT 212 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~--GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~--~~~~~ 212 (753)
++++ .+|+.+ +|+ ||+|||||||||++||+|.++ +...++|.... .....
T Consensus 15 i~~~-~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~~ 68 (320)
T 2z30_A 15 VKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------------------IAWCVSTLRGKVSTKLRD 68 (320)
T ss_dssp TTCG-GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG------------------------EEEEEECGGGCCBCCHHH
T ss_pred cChH-HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc------------------------cccCccccCCccCCCCCC
Confidence 5556 899988 999 999999999999999999853 33334442111 01112
Q ss_pred CCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC----------
Q 044745 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD---------- 281 (753)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~---------- 281 (753)
..|..||||||||||+|..+ ...+.||||+|+|+.+|+++. .| +..++++++|+||+++
T Consensus 69 ~~d~~gHGT~vAgiia~~~n---------~~g~~GvAp~a~l~~~~v~~~-~g~~~~~~i~~ai~~a~~~~~~~~~~~~~ 138 (320)
T 2z30_A 69 CADQNGHGTHVIGTIAALNN---------DIGVVGVAPGVQIYSVRVLDA-RGSGSYSDIAIGIEQAILGPDGVADKDGD 138 (320)
T ss_dssp HBCSSSHHHHHHHHHHCCSS---------SBSCCCSSTTCEEEEEECSCT-TSEEEHHHHHHHHHHHHHTTTTCSCTTSS
T ss_pred CCCCCCCHHHHHHHHHcccC---------CCceEeeCCCCEEEEEEeeCC-CCCccHHHHHHHHHHHHhCcccccccccc
Confidence 36789999999999999731 112389999999999999987 55 7889999999999987
Q ss_pred ----------CCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCcccee
Q 044745 282 ----------GVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFV 351 (753)
Q Consensus 282 ----------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~ 351 (753)
+++|||||||... ....+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 139 ~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---- 210 (320)
T 2z30_A 139 GIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN---- 210 (320)
T ss_dssp SCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----
T ss_pred cccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC----
Confidence 9999999999873 2456777788899999999999999998877788889999999986432
Q ss_pred eeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCc
Q 044745 352 DKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGA 431 (753)
Q Consensus 352 ~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga 431 (753)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCc
Q 044745 432 EGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPD 511 (753)
Q Consensus 432 ~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPD 511 (753)
+.++.||++|| +
T Consensus 211 ----------------------------------------------------------~~~~~~S~~g~----------~ 222 (320)
T 2z30_A 211 ----------------------------------------------------------DNIASFSNRQP----------E 222 (320)
T ss_dssp ----------------------------------------------------------SCBCTTSCSSC----------S
T ss_pred ----------------------------------------------------------CCcCcccCCCC----------C
Confidence 45788999998 7
Q ss_pred eeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHH
Q 044745 512 ISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH-------------PDWSPSAIKSAIM 578 (753)
Q Consensus 512 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------P~ls~~~ik~~L~ 578 (753)
|+|||++|+++++.+ .|..++|||||||||||++|||+|++ |+|++.+||++|+
T Consensus 223 v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~ 289 (320)
T 2z30_A 223 VSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILH 289 (320)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHH
T ss_pred EEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHH
Confidence 899999999998764 68999999999999999999999999 9999999999999
Q ss_pred hcCCCCCCCCCCCCCCccCCCCCCccccCCC
Q 044745 579 TTAWPMNSSKNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 579 ~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 609 (753)
+||+++...+ .+..||+|+||+.+|++.
T Consensus 290 ~ta~~~~~~g---~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 290 ITADDLGPTG---WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHSBCCSSSS---SBTTTBTCBCCHHHHHHH
T ss_pred hhCccCCCCC---CCCCcCCceeCHHHHHHH
Confidence 9999986654 267899999999999863
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=438.55 Aligned_cols=271 Identities=23% Similarity=0.193 Sum_probs=221.2
Q ss_pred cccccccccCCCCCC--CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC--CCCCCC
Q 044745 137 MGLNQSITRKRSVES--DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD--DISGNT 212 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~--GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~--~~~~~~ 212 (753)
++++ .+|+. .+|+ ||+||||||||| +||+|.++ ++..++|..+ +.....
T Consensus 30 i~~~-~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~~ 82 (347)
T 2iy9_A 30 IGLT-ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS------------------------EFAKFSFTQDGSPFPVKK 82 (347)
T ss_dssp HTCC-HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC------------------------EEEEEECBTTCCSSCCSS
T ss_pred CChH-HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC------------------------cccCCcccCCCCCCCCCC
Confidence 5566 89988 8999 999999999999 99999853 3344555322 122235
Q ss_pred CCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHC------CCcEE
Q 044745 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIAD------GVDII 286 (753)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~------gvdVI 286 (753)
+.|..||||||||||+|. .|+ .||||+|+|+.+|++++ .+.. ++++||+||+++ +++||
T Consensus 83 ~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~-~~~~--~~~~ai~~a~~~~~~~~~~~~Vi 147 (347)
T 2iy9_A 83 SEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPD-GVQD--SWIRAIESIMSNVFLAPGEEKII 147 (347)
T ss_dssp SHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSS-BCTT--HHHHHHHHHHTCTTSCTTEEEEE
T ss_pred CCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecC-CCHH--HHHHHHHHHHhhhhcccCCceEE
Confidence 678899999999999997 122 99999999999999877 4433 999999999999 99999
Q ss_pred EeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCC-------CCCccCCCC----------ceEEeecccC--c
Q 044745 287 TISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPF-------IGSTVSVAP----------WLMSVAASNT--D 347 (753)
Q Consensus 287 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~~~~~~~~p----------~vitVga~~~--~ 347 (753)
|||||... .......+..++..+.++|++||+||||+|.. ...++...| ++|+|||++. +
T Consensus 148 n~S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~ 226 (347)
T 2iy9_A 148 NISGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRK 226 (347)
T ss_dssp EESSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCT
T ss_pred EeccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCC
Confidence 99999762 23456778888899999999999999999975 345566777 9999998764 2
Q ss_pred cceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHH
Q 044745 348 RLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVH 427 (753)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~ 427 (753)
... .
T Consensus 227 g~~-------------------------------------------------------~--------------------- 230 (347)
T 2iy9_A 227 GET-------------------------------------------------------P--------------------- 230 (347)
T ss_dssp TSC-------------------------------------------------------C---------------------
T ss_pred Cce-------------------------------------------------------e---------------------
Confidence 100 0
Q ss_pred hcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCC
Q 044745 428 KAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDI 507 (753)
Q Consensus 428 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~ 507 (753)
......+.||++||+
T Consensus 231 -----------------------------------------------------------~~~~~~~~fS~~G~~------ 245 (347)
T 2iy9_A 231 -----------------------------------------------------------VLHGGGITGSRFGNN------ 245 (347)
T ss_dssp -----------------------------------------------------------CBCCCSSSCBCBCTT------
T ss_pred -----------------------------------------------------------cccCCCCCCCCCCCC------
Confidence 001345789999994
Q ss_pred CCCceeeCCccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 508 LKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 508 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 246 -~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 311 (347)
T 2iy9_A 246 -WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL 311 (347)
T ss_dssp -TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG
T ss_pred -CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC
Confidence 679999999999998754 689999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCccCCCCCCccccCCC
Q 044745 588 KNKDAEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 588 ~~~~~~~~~G~G~in~~~Al~~ 609 (753)
. +..+|+|+||+.+|++.
T Consensus 312 ~----~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 312 V----DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp T----TTSGGGEECCHHHHHHH
T ss_pred C----CccccCCEecHHHHHHH
Confidence 3 46899999999999984
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=431.49 Aligned_cols=295 Identities=22% Similarity=0.305 Sum_probs=223.6
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCc----ceeeeeec-----CCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNN----KIIGARYY-----TTDD 207 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~----kl~g~~~~-----~g~~ 207 (753)
++++ .+|+.+++|+||+||||||||+ +||+|.++-.. .|+-..........+. ......++ .+.+
T Consensus 19 i~~~-~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 3lpc_A 19 VKAD-KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRP 92 (340)
T ss_dssp CCHH-HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTT
T ss_pred CCHH-HHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCC
Confidence 5666 8999999999999999999998 99999854111 1100000000000000 00000011 1111
Q ss_pred CCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH-------
Q 044745 208 ISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA------- 280 (753)
Q Consensus 208 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------- 280 (753)
.+.....|..||||||||||+|...++. | +.||||+|+|+.+|+++. .++..++++++|+||++
T Consensus 93 ~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~-~~~~~~~~~~ai~~a~~~~~~~~~ 163 (340)
T 3lpc_A 93 DPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGR-CGGYDSDISDGLYWAAGGRIAGIP 163 (340)
T ss_dssp CGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBT-TBCCHHHHHHHHHHHHTCCCTTSC
T ss_pred CcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecC-CCCcHHHHHHHHHHHhcccccccc
Confidence 2223457889999999999999864322 2 389999999999999988 66889999999999998
Q ss_pred ---CCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEe
Q 044745 281 ---DGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVL 356 (753)
Q Consensus 281 ---~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~ 356 (753)
.+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 164 ~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------- 231 (340)
T 3lpc_A 164 ENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--------- 231 (340)
T ss_dssp CCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT---------
T ss_pred cccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC---------
Confidence 89999999999762 23456777788899999999999999997653 356678999999986432
Q ss_pred CCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEE
Q 044745 357 GSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVS 436 (753)
Q Consensus 357 ~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~ 436 (753)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCC
Q 044745 437 LNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPG 516 (753)
Q Consensus 437 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG 516 (753)
+.++.||++|| ||||+|||
T Consensus 232 -----------------------------------------------------~~~~~~S~~g~--------~~di~ApG 250 (340)
T 3lpc_A 232 -----------------------------------------------------GIRASFSNYGV--------DVDLAAPG 250 (340)
T ss_dssp -----------------------------------------------------SSBCTTCCBST--------TCCEEEEC
T ss_pred -----------------------------------------------------CCcCCCCCCCC--------CceEEecC
Confidence 45788999998 45999999
Q ss_pred ccEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhcCCCCCCCCCCCC
Q 044745 517 VDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSF-H---PDWSPSAIKSAIMTTAWPMNSSKNKDA 592 (753)
Q Consensus 517 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~ls~~~ik~~L~~TA~~~~~~~~~~~ 592 (753)
++|+++++.+... .....|..++|||||||||||++|||+|+ + |.|++++||++|++||+++... .
T Consensus 251 ~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~~----~ 320 (340)
T 3lpc_A 251 QDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----L 320 (340)
T ss_dssp SSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSSC----C
T ss_pred CCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCCC----C
Confidence 9999998765311 11246999999999999999999999998 5 9999999999999999988643 3
Q ss_pred CCccCCCCCCccccCCC
Q 044745 593 EFAFGSGHINPVEAVNP 609 (753)
Q Consensus 593 ~~~~G~G~in~~~Al~~ 609 (753)
+..+|+|+||+.+|++.
T Consensus 321 ~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 321 DRALGSGIVDAEAAVNS 337 (340)
T ss_dssp SSCCCSSBCCHHHHHHH
T ss_pred CCCcccceecHHHHHHH
Confidence 67899999999999874
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-49 Score=438.86 Aligned_cols=297 Identities=27% Similarity=0.309 Sum_probs=230.7
Q ss_pred cccccccccccc-CCCCCCCcEEEEEecCCCC------CCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC
Q 044745 134 WDFMGLNQSITR-KRSVESDIIVGVIDSGIWP------ESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD 206 (753)
Q Consensus 134 ~~~~g~~~~~~~-~~~~G~GV~VaVIDtGid~------~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~ 206 (753)
.+.++++ .+|. .+++|+||+|||||||||+ +||+|.++ +...++|.+.
T Consensus 5 ~~~i~~~-~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~------------------------i~~~~~~~~~ 59 (434)
T 1wmd_A 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK------------------------ITALYALGRT 59 (434)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC------------------------EEEEEETTTT
T ss_pred hhhhCch-hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC------------------------EeeeccccCC
Confidence 4567888 8998 7999999999999999999 79999743 4444555332
Q ss_pred CCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCC---CHHHHHHHHHHHHHCCC
Q 044745 207 DISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGC---AETAILGAFDDAIADGV 283 (753)
Q Consensus 207 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~---~~~~i~~ai~~a~~~gv 283 (753)
..+.|..||||||||||+|++. + +.||||+|+|+.+|+++. .|. ..+++.++|++|+++|+
T Consensus 60 ----~~~~d~~gHGT~VAgiiag~g~----------~-~~GvAp~a~l~~~~v~~~-~g~~~~~~~~~~~ai~~a~~~g~ 123 (434)
T 1wmd_A 60 ----NNANDTNGHGTHVAGSVLGNGS----------T-NKGMAPQANLVFQSIMDS-GGGLGGLPSNLQTLFSQAYSAGA 123 (434)
T ss_dssp ----TCCCCSSSHHHHHHHHHHCCSS----------S-SCCSSTTSEEEEEECCCT-TSSCTTSCSSHHHHHHHHHHTTC
T ss_pred ----CCCCCCCCcHHHHHHHHHcCCC----------C-ceeeCCCCEEEEEEeecC-CCccccccHHHHHHHHHHHhcCC
Confidence 3567899999999999998641 1 389999999999999987 553 45678999999999999
Q ss_pred cEEEeecCCCCCCCCcccHHHHHHHHH-hhCCcEEEEecCCCCCCCC--CccCCCCceEEeecccCccceeeeEEeCCCe
Q 044745 284 DIITISLGGQNTLNFTQDVIAIGSFHA-MAKGVLTLHSAGNSGPFIG--STVSVAPWLMSVAASNTDRLFVDKVVLGSGQ 360 (753)
Q Consensus 284 dVIn~SlG~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 360 (753)
+|||||||...... .++...+++++ .++|++||+||||+|.... ..+..++++|+|||++..+...
T Consensus 124 ~Vin~S~G~~~~~~--~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~--------- 192 (434)
T 1wmd_A 124 RIHTNSWGAAVNGA--YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF--------- 192 (434)
T ss_dssp SEEEECCCBCCTTC--CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG---------
T ss_pred eEEEecCCCCcCCc--CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc---------
Confidence 99999999873222 23455555555 5899999999999998643 4456789999999976542000
Q ss_pred EEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccC
Q 044745 361 TLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDV 440 (753)
Q Consensus 361 ~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~ 440 (753)
+ .+
T Consensus 193 ------------------------------------------~---------------------------------~~-- 195 (434)
T 1wmd_A 193 ------------------------------------------G---------------------------------SY-- 195 (434)
T ss_dssp ------------------------------------------C---------------------------------GG--
T ss_pred ------------------------------------------C---------------------------------cc--
Confidence 0 00
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEE
Q 044745 441 EFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDIL 520 (753)
Q Consensus 441 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~ 520 (753)
....+.++.||++||+. ++++||||+|||++|+
T Consensus 196 ---------------------------------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~ 228 (434)
T 1wmd_A 196 ---------------------------------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFIL 228 (434)
T ss_dssp ---------------------------------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEE
T ss_pred ---------------------------------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCeE
Confidence 01136789999999987 8999999999999999
Q ss_pred eccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 044745 521 AAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDW-----SPSAIKSAIMTTAWPMNSSKNKDAEFA 595 (753)
Q Consensus 521 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~l-----s~~~ik~~L~~TA~~~~~~~~~~~~~~ 595 (753)
++.+........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.... .+..
T Consensus 229 s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~~---~~~~ 304 (434)
T 1wmd_A 229 SARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY---PNGN 304 (434)
T ss_dssp EECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCS---SCTT
T ss_pred ecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCCC---CCcc
Confidence 998653210000 00113579999999999999999999999999876 99999999999999864322 3689
Q ss_pred cCCCCCCccccCCCC
Q 044745 596 FGSGHINPVEAVNPG 610 (753)
Q Consensus 596 ~G~G~in~~~Al~~g 610 (753)
+|||++|+.+|++..
T Consensus 305 ~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 305 QGWGRVTLDKSLNVA 319 (434)
T ss_dssp TTTCBCCHHHHHTCE
T ss_pred CCcCeEeHHHhcccc
Confidence 999999999999754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=462.69 Aligned_cols=408 Identities=20% Similarity=0.234 Sum_probs=266.0
Q ss_pred CcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhcccccCc
Q 044745 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTASTASGNE 231 (753)
Q Consensus 152 GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAGiiag~~ 231 (753)
+|+|||||||+|.+|++..-. ..|+...+.+ .| .+.+-+..++.++........|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg-~F--~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~ 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETR-NV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCC-EE--SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC
T ss_pred CEEEEEEeCCCCCCccccccc------cccccccccc-cc--ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC
Confidence 699999999998777664310 0111111100 01 11222222221111111123578999999999999986
Q ss_pred ccccccccccccceeecccccceeccccccCCCC--CCHHHHHHHHHHHHH-----CCCcEEEeecCCCCCCCCcccHHH
Q 044745 232 VKDASFFGVGQGTARGGVPSARIAAYKVCSPELG--CAETAILGAFDDAIA-----DGVDIITISLGGQNTLNFTQDVIA 304 (753)
Q Consensus 232 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~-----~gvdVIn~SlG~~~~~~~~~~~~~ 304 (753)
++ ..+.||||+|+|+.+|+++...+ +....++.+|.+|++ .|++|||||||... .....+.+.
T Consensus 285 -N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~~l~ 354 (1354)
T 3lxu_X 285 -SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSGRIG 354 (1354)
T ss_dssp -SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCCHHH
T ss_pred -CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccHHHH
Confidence 21 22399999999999999876322 366788888888887 79999999999983 223456777
Q ss_pred HHHHHHh-hCCcEEEEecCCCCCCCCCc--cC--CCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeE
Q 044745 305 IGSFHAM-AKGVLTLHSAGNSGPFIGST--VS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPL 379 (753)
Q Consensus 305 ~a~~~a~-~~Gi~vV~AAGN~G~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~l 379 (753)
.++.++. ++|++||+||||+|....++ +. ..+++|+|||++...........
T Consensus 355 ~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----------------------- 411 (1354)
T 3lxu_X 355 ELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----------------------- 411 (1354)
T ss_dssp HHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------------------------
T ss_pred HHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-----------------------
Confidence 7788876 89999999999999865443 34 37999999997654211000000
Q ss_pred EeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehh
Q 044745 380 VDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNED 459 (753)
Q Consensus 380 v~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~ 459 (753)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcccc
Q 044745 460 NFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQA 539 (753)
Q Consensus 460 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 539 (753)
.....+.++.|||+||+. ++++||||+|||++|+++..... +
T Consensus 412 -------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-----------~ 453 (1354)
T 3lxu_X 412 -------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-----------S 453 (1354)
T ss_dssp -------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-----------------------
T ss_pred -------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-----------C
Confidence 000125789999999987 89999999999999998755432 4
Q ss_pred cceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCCeeeeC
Q 044745 540 KFNVVSGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYET 615 (753)
Q Consensus 540 ~y~~~sGTSmAaP~VAG~aALl~~----~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~glv~~~ 615 (753)
.|..++|||||||||||++|||++ .+|+|++++||++|++||++++.. .++.||+|+||+.+|++..+.|+.
T Consensus 454 ~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~----~~~~~G~GlLDa~~AV~~a~~~~~ 529 (1354)
T 3lxu_X 454 KSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQGHGLLNVEKAFEHLTEHRQ 529 (1354)
T ss_dssp ---CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS----CTTTSSSSBCCHHHHHHHHHTTTT
T ss_pred ceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC----CcccccCCEeCHHHHHHHHHhcCC
Confidence 789999999999999999999987 799999999999999999998764 367899999999999999999999
Q ss_pred ChhhHHHHHhcCCCCccccceecCCCcccCCCCCCCCCCCCCCCcEEeeeCCCCceeEEEEEEEEecC---CCCe---eE
Q 044745 616 FEQDYIIMLCSMGYDERNIGKISGNISTCPKGSDKATPKDLNYPSMAAQVSPGKSFTINFPRTVTNVG---LANS---TY 689 (753)
Q Consensus 616 ~~~~~~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtn~~---~~~~---~y 689 (753)
.+.+|+.|+|..++.... .+....+ .| +. .....++|+-++.|.. .... .-
T Consensus 530 ~p~~~v~f~~~v~~~~~r-gIylR~~-~~--------------~~-------~~~~tv~V~p~f~~~~~~~~~~~i~f~~ 586 (1354)
T 3lxu_X 530 SKDNMLRFSVRVGNNADK-GIHLRQG-VQ--------------RN-------SIDYNVYIEPIFYNDKEADPKDKFNFNV 586 (1354)
T ss_dssp CGGGGEEEEEEETTTTBS-SEEECSS-CC--------------CS-------CEEEEEEEEEEESSCSCSSSTTCSCCCC
T ss_pred CCccceEEEEEecCCCCC-ceEEecc-cc--------------CC-------ceEEEEEEeeeecCcccCChhhccceEE
Confidence 999999999998853321 1111111 00 00 0002223333332211 1111 12
Q ss_pred EEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEEC-----CCeEEEccc
Q 044745 690 KAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWSD-----GNHRVRSPI 752 (753)
Q Consensus 690 ~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~-----~~~~v~~p~ 752 (753)
++.+....- -|.+ |..|.+ .++.++|.|+++++.. ..+..++.|...| .+...|+||
T Consensus 587 ~l~L~~t~~--wv~~-p~~l~l--~~~~r~~~v~vDp~~L-~~G~h~~~v~~~D~~~~~~gp~f~ipv 648 (1354)
T 3lxu_X 587 RLNLIASQP--WVQC-GAFLDL--SYGTRSIAVRVDPTGL-QPGVHSAVIRAYDTDCVQKGSLFEIPV 648 (1354)
T ss_dssp EEEEEESST--TEEE-CSCEEC--TTSCEEEEEEECGGGC-CSEEEEEEEEEEESSCTTSCCSEEEEE
T ss_pred EEEEecCCC--ceec-ccceee--cCCCceEEEEECCCCC-CCcceeEEEEEEEcCCcccCceEEeeE
Confidence 222222211 2333 888877 5788999999999974 5567899998765 246788886
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=404.22 Aligned_cols=236 Identities=25% Similarity=0.348 Sum_probs=202.7
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcc
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGT 221 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGT 221 (753)
.+|..+++|+||+|||||||||++||+|.++ ++..++|.... ..+.|..||||
T Consensus 20 ~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~~---~~~~d~~gHGT 72 (284)
T 1sh7_A 20 RNYNANFDGFGVTAYVIDTGVNNNHEEFGGR------------------------SVSGYDFVDND---ADSSDCNGHGT 72 (284)
T ss_dssp SBCCCSCCCTTCEEEEEESCCCTTCTTTTTC------------------------EEEEEETTTTB---SCCCCSSSHHH
T ss_pred hhhhcCCCCCCCEEEEEcCCCCCCChhHcCC------------------------ccccccccCCC---CCCCCCCCcHH
Confidence 6899999999999999999999999999853 33455563321 34678999999
Q ss_pred hhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC--CCcEEEeecCCCCCCCC
Q 044745 222 HTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD--GVDIITISLGGQNTLNF 298 (753)
Q Consensus 222 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~--gvdVIn~SlG~~~~~~~ 298 (753)
||||||+|.. .||||+|+|+.+|+++. .+ +..+++++||+|++++ +++|||||||..
T Consensus 73 ~vAgiia~~~--------------~GvAp~a~l~~~kv~~~-~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~----- 132 (284)
T 1sh7_A 73 HVAGTIGGSQ--------------YGVAKNVNIVGVRVLSC-SGSGTTSGVISGVDWVAQNASGPSVANMSLGGG----- 132 (284)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECBCT-TSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS-----
T ss_pred HHHHHHhccc--------------CCcCCCCEEEEEEeeCC-CCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC-----
Confidence 9999999874 79999999999999987 55 7889999999999984 799999999987
Q ss_pred cccHHHHHHHHHhhCCcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCcee
Q 044745 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTF 377 (753)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 377 (753)
....+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 133 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 182 (284)
T 1sh7_A 133 QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS------------------------------ 182 (284)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC------------------------------
Confidence 2467788888999999999999999997642 446678999999986432
Q ss_pred eEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEee
Q 044745 378 PLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALN 457 (753)
Q Consensus 378 ~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 457 (753)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcc
Q 044745 458 EDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR 537 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 537 (753)
+.++.||++||+. ||+|||++|+++++.+
T Consensus 183 --------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~----------- 211 (284)
T 1sh7_A 183 --------------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG----------- 211 (284)
T ss_dssp --------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-----------
T ss_pred --------------------------------CCcCcccCCCCcc--------EEEeccCCeEEecCCC-----------
Confidence 4578899999975 9999999999988764
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 538 QAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 538 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
.|..++|||||||||||++|||+|++|+|+++|||++|++||++....
T Consensus 212 --~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 259 (284)
T 1sh7_A 212 --GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVS 259 (284)
T ss_dssp --SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred --CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCcc
Confidence 689999999999999999999999999999999999999999876553
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=399.81 Aligned_cols=237 Identities=25% Similarity=0.347 Sum_probs=201.8
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcc
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGT 221 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGT 221 (753)
.+|..+++|+||+|+|||||||++||+|.++ +...++|.++. .++.|+.+|||
T Consensus 22 ~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~------------------------~~~~~d~~~~~---~~~~d~~gHGT 74 (278)
T 2b6n_A 22 NNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR------------------------ASSGYDFIDND---YDATDCNGHGT 74 (278)
T ss_dssp SEEECSCCCTTCEEEEEESCCCTTCGGGTTC------------------------EEEEEETTTTB---SCCCCSSSHHH
T ss_pred hhcccCCCCCCCEEEEEeCCCCCCChhHhcc------------------------cccCeecCCCC---CCCCCCCCcHH
Confidence 6899999999999999999999999999853 33445553321 34678999999
Q ss_pred hhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHH--CCCcEEEeecCCCCCCCC
Q 044745 222 HTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIA--DGVDIITISLGGQNTLNF 298 (753)
Q Consensus 222 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~--~gvdVIn~SlG~~~~~~~ 298 (753)
||||||+|.. .||||+|+|+.+|++++ .+ +..++++++|+|+++ .+++|||||||...
T Consensus 75 ~vAgiia~~~--------------~GvAp~a~i~~~~v~~~-~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~---- 135 (278)
T 2b6n_A 75 HVAGTIGGST--------------YGVAKNVNVVGVRVLNC-SGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA---- 135 (278)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC----
T ss_pred HHHHHHHCCC--------------cCCCCCCeEEEEEEECC-CCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc----
Confidence 9999999873 79999999999999987 55 788999999999998 59999999999872
Q ss_pred cccHHHHHHHHHhhCCcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCcee
Q 044745 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTF 377 (753)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 377 (753)
...+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 136 -~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 184 (278)
T 2b6n_A 136 -SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN------------------------------ 184 (278)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------------------------
T ss_pred -CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC------------------------------
Confidence 457778888899999999999999997653 346678999999986432
Q ss_pred eEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEee
Q 044745 378 PLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALN 457 (753)
Q Consensus 378 ~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 457 (753)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcc
Q 044745 458 EDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR 537 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 537 (753)
+.++.||++||.. ||+|||++|++++....
T Consensus 185 --------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~---------- 214 (278)
T 2b6n_A 185 --------------------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN---------- 214 (278)
T ss_dssp --------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTST----------
T ss_pred --------------------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCCC----------
Confidence 4578899999965 99999999999886532
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCC
Q 044745 538 QAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNS 586 (753)
Q Consensus 538 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~ 586 (753)
..|..++|||||||||||++|||+|++|+|+++|||++|++||++...
T Consensus 215 -~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 262 (278)
T 2b6n_A 215 -SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKV 262 (278)
T ss_dssp -TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred -CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCc
Confidence 478999999999999999999999999999999999999999986543
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-47 Score=397.95 Aligned_cols=240 Identities=26% Similarity=0.324 Sum_probs=205.5
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
+++. .+|..+.+|+||+|+|||||||++||+|.++ +...++|.+ ..+.|.
T Consensus 18 ~~~~-~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~-----~~~~d~ 67 (276)
T 4dzt_A 18 LPLS-NSYTYTATGRGVNVYVIDTGIRTTHREFGGR------------------------ARVGYDALG-----GNGQDC 67 (276)
T ss_dssp SSCC-SCEECSCCCTTCEEEEEESCCCTTCGGGTTC------------------------EEEEEETTS-----SCSCCS
T ss_pred CCcc-cceecCCCCCCcEEEEEccCCCCCChhHccC------------------------eeccccCCC-----CCCCCC
Confidence 3444 7899999999999999999999999999853 333444432 345678
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC--CCcEEEeecCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD--GVDIITISLGGQ 293 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~--gvdVIn~SlG~~ 293 (753)
.||||||||||+|.. .||||+|+|+.+|++++ .+ +..++++++++|+++. +++|||||||..
T Consensus 68 ~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~-~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~ 132 (276)
T 4dzt_A 68 NGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDC-NGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGG 132 (276)
T ss_dssp SSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEE
T ss_pred CCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCC-CCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCC
Confidence 999999999999874 79999999999999987 44 8899999999999987 899999999986
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc-cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST-VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS 372 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 372 (753)
....+..++.++.++|+++|+||||+|...... +...|++|+|||++.+
T Consensus 133 -----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 182 (276)
T 4dzt_A 133 -----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS------------------------- 182 (276)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------
T ss_pred -----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-------------------------
Confidence 246788888899999999999999999765433 6678999999985432
Q ss_pred CCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccccc
Q 044745 373 KGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLP 452 (753)
Q Consensus 373 ~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 452 (753)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC
Q 044745 453 AVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532 (753)
Q Consensus 453 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 532 (753)
+.++.||++||+. ||+|||++|++++....
T Consensus 183 -------------------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~----- 212 (276)
T 4dzt_A 183 -------------------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTSD----- 212 (276)
T ss_dssp -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-----
T ss_pred -------------------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-----
Confidence 5678899999976 99999999999987653
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....
T Consensus 213 ------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 213 ------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp ------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred ------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 4789999999999999999999999999999999999999999987654
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=399.02 Aligned_cols=240 Identities=28% Similarity=0.332 Sum_probs=203.8
Q ss_pred cccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcch
Q 044745 143 ITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTH 222 (753)
Q Consensus 143 ~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGTh 222 (753)
.|. ..+|+||+|+|||||||++||+|.++ +...++|.+ .+.|..|||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~------------------------~~~~~~~~~------~~~d~~gHGT~ 72 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR------------------------AQMVKTYYY------SSRDGNGHGTH 72 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEESSS------CSSCSSSHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc------------------------cccccCCCC------CCCCCCCCHHH
Confidence 444 37899999999999999999999853 333445542 35678999999
Q ss_pred hhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCC-------cEEEeecCCCC
Q 044745 223 TASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGV-------DIITISLGGQN 294 (753)
Q Consensus 223 VAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gv-------dVIn~SlG~~~ 294 (753)
|||||+|.. .||||+|+|+.+|++++ .+ +..++++++|+|++++++ +|||||||..
T Consensus 73 vAgiia~~~--------------~GvAp~a~i~~~~v~~~-~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~- 136 (279)
T 2pwa_A 73 CAGTVGSRT--------------YGVAKKTQLFGVKVLDD-NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG- 136 (279)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-
T ss_pred HHHHHHhcc--------------cccCCCCEEEEEEeEcC-CCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC-
Confidence 999999873 89999999999999988 55 889999999999999887 9999999976
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSK 373 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 373 (753)
..+.+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 137 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 186 (279)
T 2pwa_A 137 ----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------------------- 186 (279)
T ss_dssp ----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC--------------------------
Confidence 2467788888999999999999999998653 346678999999986532
Q ss_pred CceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccE
Q 044745 374 GKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPA 453 (753)
Q Consensus 374 ~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 453 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCC
Q 044745 454 VALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDP 533 (753)
Q Consensus 454 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 533 (753)
+.++.||++||+. ||+|||++|+++++.+
T Consensus 187 ------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~------- 215 (279)
T 2pwa_A 187 ------------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIGG------- 215 (279)
T ss_dssp ------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------
T ss_pred ------------------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeecCC-------
Confidence 4678899999965 9999999999998764
Q ss_pred CCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCcc
Q 044745 534 EDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPV 604 (753)
Q Consensus 534 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~ 604 (753)
.|..++|||||||||||++|||+|+ |+++++|||++|++||++.... .+|+|..|+.
T Consensus 216 ------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~~-------~~~~g~~n~l 272 (279)
T 2pwa_A 216 ------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDLS-------NIPFGTVNLL 272 (279)
T ss_dssp ------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCCB-------SCCTTSCCEE
T ss_pred ------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccccC-------CCCCCCccEe
Confidence 6899999999999999999999999 9999999999999999886432 3678887763
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=421.23 Aligned_cols=278 Identities=15% Similarity=0.175 Sum_probs=216.2
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
++++ .+|..+++|+||+|||||||||++||+|.+.- + ..+.++|..+..+.....|.
T Consensus 41 i~~~-~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~---------------~~~~~d~~~~~~~~~p~~d~ 97 (503)
T 2id4_A 41 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C---------------AEGSWDFNDNTNLPKPRLSD 97 (503)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C---------------GGGCEETTTTBSCCCCCSTT
T ss_pred cChH-HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c---------------ccCcccCCCCCCCCCCCCCC
Confidence 5555 89999999999999999999999999998641 0 01234553332222233578
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~ 296 (753)
.||||||||||+|...++. | +.||||+|+|+.+|+++. .++..++++||+|+++++ +|||||||.....
T Consensus 98 ~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~ 166 (503)
T 2id4_A 98 DYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN-DIYSCSWGPADDG 166 (503)
T ss_dssp TTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-SEEEECEESCCSS
T ss_pred CChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-CEEEeCCCcCCCC
Confidence 9999999999999753321 1 389999999999999865 367889999999999988 9999999986322
Q ss_pred CC---cccHHHHHHHHHh-----hCCcEEEEecCCCCCCCC--Ccc--CCCCceEEeecccCccceeeeEEeCCCeEEee
Q 044745 297 NF---TQDVIAIGSFHAM-----AKGVLTLHSAGNSGPFIG--STV--SVAPWLMSVAASNTDRLFVDKVVLGSGQTLVG 364 (753)
Q Consensus 297 ~~---~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~--~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g 364 (753)
.. ....+..++.++. .+|++||+||||+|.... .++ ..++++|+|||++.+
T Consensus 167 ~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~----------------- 229 (503)
T 2id4_A 167 RHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK----------------- 229 (503)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT-----------------
T ss_pred ccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC-----------------
Confidence 11 2234566666665 479999999999997542 222 256789999986532
Q ss_pred EEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccc
Q 044745 365 YSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNK 444 (753)
Q Consensus 365 ~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 444 (753)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceee----CCccEE
Q 044745 445 VSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISA----PGVDIL 520 (753)
Q Consensus 445 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~A----PG~~I~ 520 (753)
+.++.||++||.. |++| ||..|+
T Consensus 230 ---------------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG~~I~ 256 (503)
T 2id4_A 230 ---------------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSGEYIH 256 (503)
T ss_dssp ---------------------------------------------SCCCTTCCCCTTE--------EEEEECSBTTBCEE
T ss_pred ---------------------------------------------CCcCCcCCCCCcc--------eEeecCCCCCCceE
Confidence 4568899999987 8887 899999
Q ss_pred eccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC-CCC--------C
Q 044745 521 AAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS-KNK--------D 591 (753)
Q Consensus 521 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~-~~~--------~ 591 (753)
++.... ..|..++|||||||||||++|||+|++|+|++++||++|+.||+++... ... .
T Consensus 257 st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~ 324 (503)
T 2id4_A 257 SSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 324 (503)
T ss_dssp EECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSE
T ss_pred eecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCc
Confidence 985443 4799999999999999999999999999999999999999999988754 100 0
Q ss_pred CCCccCCCCCCccccCCCC
Q 044745 592 AEFAFGSGHINPVEAVNPG 610 (753)
Q Consensus 592 ~~~~~G~G~in~~~Al~~g 610 (753)
.+..||+|+||+.+|++..
T Consensus 325 ~~~~~G~G~vda~~Av~~a 343 (503)
T 2id4_A 325 YSHRYGFGKIDAHKLIEMS 343 (503)
T ss_dssp EBTTTBTCBCCHHHHHHHH
T ss_pred cCcccCCcEecHHHHHHHH
Confidence 2568999999999999843
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=419.63 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=215.7
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC---CCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD---ISGNTA 213 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~---~~~~~~ 213 (753)
++++ .+|..+++|+||+|||||||||++||+|.+.-. ....++|.++. .+...+
T Consensus 25 i~~~-~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~----------------------~~~~~d~~~~~~~p~~~~~~ 81 (471)
T 1p8j_A 25 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD----------------------PGASFDVNDQDPDPQPRYTQ 81 (471)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC----------------------GGGCEETTTTBSCCCCCCCT
T ss_pred CChH-HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC----------------------ccCcccccCCCCCCCCccCC
Confidence 5666 899999999999999999999999999985310 01133442221 111245
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGG 292 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~ 292 (753)
.|..+|||||||||+|...++. .+.||||+|+|+.+|+++. ..+++++|++++++ ++++|||||||.
T Consensus 82 ~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~g----~~~~~~~ai~~a~~~~~~~Vin~S~G~ 149 (471)
T 1p8j_A 82 MNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG----EVTDAVEARSLGLNPNHIHIYSASWGP 149 (471)
T ss_dssp TCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS----CCCHHHHHHHHTSCTTTCCEEEECCBS
T ss_pred CCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccCC----chhHHHHHHHhhhccCCCeEEEeccCc
Confidence 6889999999999999754321 1389999999999999753 35679999999999 999999999998
Q ss_pred CCCCCC---cccHHHHHHHHHh-----hCCcEEEEecCCCCCCCCC----ccCCCCceEEeecccCccceeeeEEeCCCe
Q 044745 293 QNTLNF---TQDVIAIGSFHAM-----AKGVLTLHSAGNSGPFIGS----TVSVAPWLMSVAASNTDRLFVDKVVLGSGQ 360 (753)
Q Consensus 293 ~~~~~~---~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~ 360 (753)
...... ....+..++.++. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 150 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~------------- 216 (471)
T 1p8j_A 150 EDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF------------- 216 (471)
T ss_dssp CCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-------------
T ss_pred CCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-------------
Confidence 632111 1233445555554 3699999999999975322 12345889999986532
Q ss_pred EEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccC
Q 044745 361 TLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDV 440 (753)
Q Consensus 361 ~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~ 440 (753)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEE
Q 044745 441 EFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDIL 520 (753)
Q Consensus 441 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~ 520 (753)
+.++.||++||.. ....+|+..+||.+|+
T Consensus 217 -------------------------------------------------g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~ 245 (471)
T 1p8j_A 217 -------------------------------------------------GNVPWYSEACSST--LATTYSSGNQNEKQIV 245 (471)
T ss_dssp -------------------------------------------------SCCCTTCCBCTTC--CEEEECCCSTTSCCEE
T ss_pred -------------------------------------------------CCcccccCCCCcc--eEEeCCCCCCCCCCEE
Confidence 4578899999986 4455666666778999
Q ss_pred eccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCC--------C
Q 044745 521 AAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKD--------A 592 (753)
Q Consensus 521 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~--------~ 592 (753)
++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++||++++...... .
T Consensus 246 st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~ 313 (471)
T 1p8j_A 246 TTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313 (471)
T ss_dssp EEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEE
T ss_pred EeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCccc
Confidence 987654 46899999999999999999999999999999999999999999886542110 2
Q ss_pred CCccCCCCCCccccCCCC
Q 044745 593 EFAFGSGHINPVEAVNPG 610 (753)
Q Consensus 593 ~~~~G~G~in~~~Al~~g 610 (753)
+..||+|+||+.+|++..
T Consensus 314 ~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 314 SHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp BTTTBTCBCCHHHHHHHH
T ss_pred CCCCCCEEEcHhHHHHHh
Confidence 578999999999999843
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=412.78 Aligned_cols=243 Identities=22% Similarity=0.242 Sum_probs=189.2
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeee-cCCCC-CC-CCCCCCCCC
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARY-YTTDD-IS-GNTARDIQG 218 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~-~~g~~-~~-~~~~~D~~g 218 (753)
..|..+.+|+||+|+|||||||++||+|.++- ....+. +...+ .. ...+.|..|
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-----------------------~~~~~~~v~~~dg~~f~~~~~D~~G 73 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-----------------------MVTDFENVPEEDGTRFHRQASKCDS 73 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE-----------------------EEEEEECCCCCC-------CTTTTH
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc-----------------------cccCcccccCCCCccccCCCCCCCC
Confidence 37888999999999999999999999998641 111111 11110 00 134568999
Q ss_pred CcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC------CCcEEEeecC
Q 044745 219 HGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD------GVDIITISLG 291 (753)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~------gvdVIn~SlG 291 (753)
|||||||||+|.. .||||+|+|+.+|++++ .| ++.+++++||+|+++. +++|||||||
T Consensus 74 HGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~-~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlG 138 (546)
T 2qtw_B 74 HGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNC-QGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA 138 (546)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCT-TSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEE
T ss_pred hHHHHHHHHhccC--------------CCcCCCCEEEEEEEECC-CCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCC
Confidence 9999999999874 79999999999999987 55 7889999999999984 8999999999
Q ss_pred CCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC-CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccC
Q 044745 292 GQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG-STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSF 370 (753)
Q Consensus 292 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~ 370 (753)
+. ....+..++.++.++|++||+||||+|.+.. ..+...|++|+|||++.+...
T Consensus 139 g~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-------------------- 193 (546)
T 2qtw_B 139 GG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-------------------- 193 (546)
T ss_dssp EE-----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB--------------------
T ss_pred CC-----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc--------------------
Confidence 76 2457788888999999999999999997653 346678999999997643100
Q ss_pred CCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccc
Q 044745 371 SSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVS 450 (753)
Q Consensus 371 ~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 450 (753)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCC
Q 044745 451 LPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVS 530 (753)
Q Consensus 451 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 530 (753)
...-..||++||. |||+|||++|+++++...
T Consensus 194 --------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~--- 224 (546)
T 2qtw_B 194 --------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS--- 224 (546)
T ss_dssp --------------------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTST---
T ss_pred --------------------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCCC---
Confidence 0000128999984 499999999999987642
Q ss_pred CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCC
Q 044745 531 DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPM 584 (753)
Q Consensus 531 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~ 584 (753)
..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.
T Consensus 225 --------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 225 --------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp --------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred --------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 4689999999999999999999999999999999999999999754
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=386.76 Aligned_cols=231 Identities=28% Similarity=0.358 Sum_probs=197.1
Q ss_pred ccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcc
Q 044745 142 SITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGT 221 (753)
Q Consensus 142 ~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGT 221 (753)
..|... +|+||+|||||||||++||+|.+. +...++|... ..|..||||
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~------~~d~~gHGT 72 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR------------------------AKQIKSYAST------ARDGHGHGT 72 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEECSSS------SSCSSSHHH
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc------------------------cccccCCCCC------CCCCCCcHH
Confidence 456655 999999999999999999999853 3444455322 237899999
Q ss_pred hhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCC-------CcEEEeecCCC
Q 044745 222 HTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADG-------VDIITISLGGQ 293 (753)
Q Consensus 222 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g-------vdVIn~SlG~~ 293 (753)
||||||+|+. .||||+|+|+.+|+++. .+ +..++++++|+|+++++ ++|||||||..
T Consensus 73 ~vAgii~~~~--------------~GvAp~a~l~~~~v~~~-~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~ 137 (279)
T 3f7m_A 73 HCAGTIGSKT--------------WGVAKKVSIFGVKVLDD-SGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG 137 (279)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE
T ss_pred HHHHHHhcCc--------------cccCCCCEEEEEEeeCC-CCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC
Confidence 9999999873 79999999999999987 44 88999999999999886 89999999976
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCc-cCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCC
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGST-VSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSS 372 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 372 (753)
....+..++.++.++|++||+||||+|...... +...|++|+|||++.+
T Consensus 138 -----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 187 (279)
T 3f7m_A 138 -----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN------------------------- 187 (279)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------
T ss_pred -----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC-------------------------
Confidence 346788888899999999999999999765433 6678999999985432
Q ss_pred CCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccccccc
Q 044745 373 KGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLP 452 (753)
Q Consensus 373 ~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 452 (753)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCC
Q 044745 453 AVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDD 532 (753)
Q Consensus 453 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 532 (753)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 188 -------------------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~~~~------ 216 (279)
T 3f7m_A 188 -------------------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTWIGG------ 216 (279)
T ss_dssp -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECGGG------
T ss_pred -------------------------------------CCCCCCCCCCCCC--------eEEECCCCeEeecCCC------
Confidence 4678899999965 9999999999998764
Q ss_pred CCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 533 PEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 533 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
.|..++|||||||+|||++|||+|++|+ ++++||++|++||++....
T Consensus 217 -------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 217 -------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLT 263 (279)
T ss_dssp -------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCCB
T ss_pred -------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccccc
Confidence 6899999999999999999999999999 9999999999999875443
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=409.84 Aligned_cols=312 Identities=18% Similarity=0.193 Sum_probs=199.8
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
+++. .+|..+++|+||+|||||||||++||||.++ ...+.++|.....+.....|.
T Consensus 57 inv~-~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-----------------------~~~~~~~~~~~~~dp~p~~~~ 112 (600)
T 3hjr_A 57 LNLW-WAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-----------------------VRPGSKNVVTGSDDPTPTDPD 112 (600)
T ss_dssp CCCH-HHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-----------------------BCSCCBCTTTSSSCCCCCSTT
T ss_pred cCHH-HHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-----------------------cccCcceeecCCCCCCCCCCC
Confidence 3444 7999999999999999999999999999853 111223342221222334467
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHH-HHHHHCCCcEEEeecCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAF-DDAIADGVDIITISLGGQNT 295 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai-~~a~~~gvdVIn~SlG~~~~ 295 (753)
++|||||||||||..+ -.| +.||||+|+|+.+|++++...+..++++.++ +++..++++|||+|||....
T Consensus 113 ~gHGThVAGiIAa~~n----~~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~ 183 (600)
T 3hjr_A 113 TAHGTSVSGIIAAVDN----AIG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVV 183 (600)
T ss_dssp CCHHHHHHHHHHCCSS----SSS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCS
T ss_pred CChHHHHHHHHhEeCC----CCC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCcccc
Confidence 8999999999998631 112 2899999999999999883336777877776 67788899999999997632
Q ss_pred CCCcccH-----HHHHHHH--HhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEec
Q 044745 296 LNFTQDV-----IAIGSFH--AMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368 (753)
Q Consensus 296 ~~~~~~~-----~~~a~~~--a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~ 368 (753)
.....+. +..++.. ...+|+++|+||||.+....... +.+.+. +++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~------------g~~~-------- 237 (600)
T 3hjr_A 184 DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRT------------GNGP-------- 237 (600)
T ss_dssp SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEE------------SSCC--------
T ss_pred CCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccC------------CCCC--------
Confidence 2222221 2222222 23689999999999764310000 000000 0000
Q ss_pred cCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccc
Q 044745 369 SFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSV 448 (753)
Q Consensus 369 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 448 (753)
.+ ......|.+ +......| +++.+
T Consensus 238 -------~~--------------~~~~~~~d~------~~~~~~~I----------------sVgA~------------- 261 (600)
T 3hjr_A 238 -------KL--------------PFENSNLDP------SNSNFWNL----------------VVSAL------------- 261 (600)
T ss_dssp -------CC--------------CSSBTTSSG------GGGSSSEE----------------EEEEE-------------
T ss_pred -------CC--------------CcccccccC------ccccCcce----------------EEeee-------------
Confidence 00 000000110 00000111 11111
Q ss_pred ccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccE--------E
Q 044745 449 VSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDI--------L 520 (753)
Q Consensus 449 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I--------~ 520 (753)
...+.++.||++|+.. +++|||.++ .
T Consensus 262 --------------------------------------~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt 295 (600)
T 3hjr_A 262 --------------------------------------NADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVT 295 (600)
T ss_dssp --------------------------------------CTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEE
T ss_pred --------------------------------------cCCCCEeecccCCcce--------eeccCCCCCCCCCcceee
Confidence 2346788999999987 899998763 2
Q ss_pred eccCCCCCCC-------------CCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCC
Q 044745 521 AAFSPLGAVS-------------DDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 587 (753)
Q Consensus 521 sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~ 587 (753)
...++..... ..........|..++|||||||||||++|||+|++|+||++|||++|++||++++..
T Consensus 296 ~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~ 375 (600)
T 3hjr_A 296 TDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAK 375 (600)
T ss_dssp ECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTT
T ss_pred ecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC
Confidence 2222211000 000112235688999999999999999999999999999999999999999998765
Q ss_pred CCCC----------------------------CCCccCCCCCCccccCCC
Q 044745 588 KNKD----------------------------AEFAFGSGHINPVEAVNP 609 (753)
Q Consensus 588 ~~~~----------------------------~~~~~G~G~in~~~Al~~ 609 (753)
..+. ....||+|+||+.+|++.
T Consensus 376 ~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~ 425 (600)
T 3hjr_A 376 HQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL 425 (600)
T ss_dssp CCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred CCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHH
Confidence 4320 245789999999999874
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-25 Score=250.95 Aligned_cols=99 Identities=24% Similarity=0.315 Sum_probs=78.1
Q ss_pred ceeecccccceeccccccCCCCCCHHHHHHHHHHHHH---CCCcEEEeecCCCCCCC--CcccHHHHHHHHHhhCCcEEE
Q 044745 244 TARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA---DGVDIITISLGGQNTLN--FTQDVIAIGSFHAMAKGVLTL 318 (753)
Q Consensus 244 ~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~---~gvdVIn~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV 318 (753)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||...... .....+..++.+|..+||+||
T Consensus 273 ~~~gvAp~a~i~~~~~~-----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP-----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHHCTTSEEEEEECC-----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccCCCCeEEEEEcC-----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 45899999999999973 246789999999998 79999999999872111 112456677778889999999
Q ss_pred EecCCCCCCC--------CCccCCCCceEEeecccCc
Q 044745 319 HSAGNSGPFI--------GSTVSVAPWLMSVAASNTD 347 (753)
Q Consensus 319 ~AAGN~G~~~--------~~~~~~~p~vitVga~~~~ 347 (753)
+||||+|... ..++...|+|++||+++..
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 9999999653 2445688999999998653
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-21 Score=210.36 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=80.6
Q ss_pred eecccccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCCCCCC---CCcccHHHHHHHHHhhCCcEEEEec
Q 044745 246 RGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGGQNTL---NFTQDVIAIGSFHAMAKGVLTLHSA 321 (753)
Q Consensus 246 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AA 321 (753)
..+||+++++.|++.+. .++..++++++|+||++ ++++|||||||..... ....+.+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~-~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCCC-CCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 45789999999999765 45778899999999998 8999999999986211 1123466777778889999999999
Q ss_pred CCCCCCCC-------------CccCCCCceEEeecccCc
Q 044745 322 GNSGPFIG-------------STVSVAPWLMSVAASNTD 347 (753)
Q Consensus 322 GN~G~~~~-------------~~~~~~p~vitVga~~~~ 347 (753)
||+|...+ ..+...|+|++||+++..
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99997532 345678999999998754
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-10 Score=101.30 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=67.3
Q ss_pred ccCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceec
Q 044745 48 NFLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQ 127 (753)
Q Consensus 48 ~~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~ 127 (753)
..+++|||+|++... ......|.+|+.+++.......++.|+|++.|+||+++++++++++|+++|+|.+||+|+.++
T Consensus 35 ~ip~~YIV~lk~~~~--~~~~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~ 112 (114)
T 2w2n_P 35 RLPGTYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 112 (114)
T ss_dssp EEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCCCcEEEEECCCCC--HHHHHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEe
Confidence 457899999998764 445567888998877544456799999999999999999999999999999999999999876
Q ss_pred c
Q 044745 128 L 128 (753)
Q Consensus 128 ~ 128 (753)
.
T Consensus 113 ~ 113 (114)
T 2w2n_P 113 A 113 (114)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=122.03 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred eecccccceeccccccCCCCCCHHHHHHHHHHHH--HCCCcEEEeecCCCCCC--CCcccHHHHHHHHHhhCCcEEEEec
Q 044745 246 RGGVPSARIAAYKVCSPELGCAETAILGAFDDAI--ADGVDIITISLGGQNTL--NFTQDVIAIGSFHAMAKGVLTLHSA 321 (753)
Q Consensus 246 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~--~~gvdVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AA 321 (753)
.+++++..++.|-.... ....+.++..+++.. .+-++|||+|||..... ..+...+...+..+..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g~--~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR--HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCSC--CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCCc--ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34444555544543211 112233444444433 34578999999987211 1122344556667889999999999
Q ss_pred CCCCCCC----------CCccCCCCceEEeecccC
Q 044745 322 GNSGPFI----------GSTVSVAPWLMSVAASNT 346 (753)
Q Consensus 322 GN~G~~~----------~~~~~~~p~vitVga~~~ 346 (753)
||+|... ...+...|||++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999753 234568899999999864
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-09 Score=88.68 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=57.3
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQL 128 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (753)
.+++|||.|++... . ...+..+++ ..+.++.++|++ |+||+++++++++++|+++|+|.+||++..+++
T Consensus 7 i~~~YIV~~k~~~~--~--~~~~~~~~~------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~ 75 (80)
T 3cnq_P 7 GEKKYIVGFKQGFK--S--CAKKEDVIS------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRA 75 (80)
T ss_dssp -CCEEEEEECTTCC--S--HHHHHHHHH------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEE
T ss_pred CCCCEEEEECCCCC--h--HHHHHHHHH------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEE
Confidence 46899999998765 1 111222222 235689999988 999999999999999999999999999999998
Q ss_pred ccCC
Q 044745 129 HTTR 132 (753)
Q Consensus 129 ~~~~ 132 (753)
+++.
T Consensus 76 ~tt~ 79 (80)
T 3cnq_P 76 LSAT 79 (80)
T ss_dssp CCC-
T ss_pred eeec
Confidence 7654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-09 Score=94.35 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=62.8
Q ss_pred cccCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCcee
Q 044745 47 LNFLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTL 126 (753)
Q Consensus 47 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~ 126 (753)
...+++|||.||+... ......+.+++.++.++.....++.++|++.|+||+++++.++++.|+++|+|.+|++++.+
T Consensus 44 ~~Ip~~YIV~~K~~~~--~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v 121 (124)
T 2qtw_A 44 WRLPGTYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 121 (124)
T ss_dssp GEEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred cCCCCCEEEEECCCCC--HHHHHHHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence 3468999999998765 33334444555554432234578999999999999999999999999999999999999987
Q ss_pred cc
Q 044745 127 QL 128 (753)
Q Consensus 127 ~~ 128 (753)
+.
T Consensus 122 ~a 123 (124)
T 2qtw_A 122 FA 123 (124)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=78.71 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=57.6
Q ss_pred ceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEec-ceeeEEEEEeCHHHHHHhhcC--CCeEEEEeCceec
Q 044745 51 MVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYK-RSFNGFAAKLTDHERQKLASM--EGVVSVFPSRTLQ 127 (753)
Q Consensus 51 ~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~-~~~~g~s~~~~~~~~~~L~~~--p~V~~v~~~~~~~ 127 (753)
++|||.||++.. ......+.++++.. ..++.+.|+ ..|+||+++++++.+++|+++ |.|.+||+|..++
T Consensus 3 ~sYIV~lk~~~~--~~~~~~~~~~~~~~------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~ 74 (76)
T 1v5i_B 3 GKFIVIFKNDVS--EDKIRETKDEVIAE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAH 74 (76)
T ss_dssp EEEEEEECTTCC--HHHHHHHHHHHHHH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEE
T ss_pred ceEEEEECCCCC--HHHHHHHHHHHHhh------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEe
Confidence 789999998765 33444566666654 247899994 899999999999999999999 8899999999876
Q ss_pred c
Q 044745 128 L 128 (753)
Q Consensus 128 ~ 128 (753)
.
T Consensus 75 ~ 75 (76)
T 1v5i_B 75 A 75 (76)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=69.02 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCCcCCCCCCCccc-------cccccEEEEee------cchhHHHHhcCceEEEEeccCCcc--cc-----cccccccE
Q 044745 394 DPQLCTDGQGCIDSR-------LAKGKIVICQS------FDGFNEVHKAGAEGSVSLNDVEFN--KV-----SSVVSLPA 453 (753)
Q Consensus 394 ~~~~C~~~~~~~~~~-------~~~gkiv~~~~------~~k~~~~~~~Ga~g~i~~~~~~~~--~~-----~~~~~~p~ 453 (753)
+...|.+ ...... ..+|||+|++| .+|..+++++||.++| +||+... .. .....||+
T Consensus 82 ~~~GC~~--~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avI-IyNn~~~g~~~~~m~~~~~~~IPs 158 (194)
T 3icu_A 82 ALNACNP--HTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAV-IFNFPGTRNEVIPMSHPGAVDIVA 158 (194)
T ss_dssp CTTCCST--TCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEE-EECCTTCTTCCCCCCCTTCCSSEE
T ss_pred CcCCCCC--CccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEE-EEeCCCCCCceeeecCCCCCceeE
Confidence 4578987 332211 25789999999 3699999999999999 9997421 11 23357999
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEE
Q 044745 454 VALNEDNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 454 ~~i~~~~g~~l~~~~~~~~~~~~~i 478 (753)
++|+..+|+.|++++..+...+++|
T Consensus 159 v~Is~~~G~~L~~~L~~G~~Vtvti 183 (194)
T 3icu_A 159 IMIGNLKGTKILQSIQRGIQVTMVI 183 (194)
T ss_dssp EEECHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECHHHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999999998888887
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=57.55 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=50.6
Q ss_pred ceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceec
Q 044745 51 MVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQ 127 (753)
Q Consensus 51 ~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~ 127 (753)
.+|||.|++... ..+.+ ...+.++.++| ..+++++++++.+.++.|+++|+|++|++|...+
T Consensus 2 ~~~IV~f~~~~~--------~~~~i------~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKF--------NPHEV------LGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGC--------CGGGG------GGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcch--------hHHHH------HHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 589999987522 11112 44578999999 8899999999999999999999999999998764
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.15 Score=45.52 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=50.1
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEE-CCCeEEEc
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWS-DGNHRVRS 750 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~-~~~~~v~~ 750 (753)
+.+.+.+++|+|..+..|+..... - ++ |+|..-++ ++|+++.++|+|.+.. .+.+.+.|... ++...+.+
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~--~-F~--i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v 112 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR--P-FS--IEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFV 112 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT--T-EE--EESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECC
T ss_pred eEEEEEEEEECCCCCEEEEEecCC--C-eE--EECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEE
Confidence 556667899999988888776533 3 55 58999999 7999999999999985 33345555553 54444433
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.48 Score=51.76 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=50.2
Q ss_pred ccccccEEEEee-----cchhHHHHhcCceEEEEeccCCcccc------cccccccEEEeehhhHHHHHHHHh
Q 044745 408 RLAKGKIVICQS-----FDGFNEVHKAGAEGSVSLNDVEFNKV------SSVVSLPAVALNEDNFNSIYSYLK 469 (753)
Q Consensus 408 ~~~~gkiv~~~~-----~~k~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l~~~~~ 469 (753)
.+++||||++.+ ..|..+++++||.|+| ++++..... .....+|...++..+++.|...+.
T Consensus 111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvI-i~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVI-IYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEE-EECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEE-EEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 479999999986 5788999999999999 888753222 134578999999999999999984
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.05 E-value=0.22 Score=61.20 Aligned_cols=25 Identities=20% Similarity=0.435 Sum_probs=23.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCCccC
Q 044745 147 RSVESDIIVGVIDSGIWPESESFSD 171 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~Hp~f~d 171 (753)
.++|+||+|||+|||||+.+|.|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 6899999999999999999999973
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.74 Score=50.66 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=53.6
Q ss_pred cccccccEEEEeecc--------------h----hHHHHhcCceEEEEeccCCccc--------c---cccccccEEEee
Q 044745 407 SRLAKGKIVICQSFD--------------G----FNEVHKAGAEGSVSLNDVEFNK--------V---SSVVSLPAVALN 457 (753)
Q Consensus 407 ~~~~~gkiv~~~~~~--------------k----~~~~~~~Ga~g~i~~~~~~~~~--------~---~~~~~~p~~~i~ 457 (753)
+.+++||||++.+.. | ..++.++||+|+| ++++.... . .....+|++.++
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avI-i~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is 202 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGII-IRSIGTDHDRMAHTGMMRYEEGVTAIPAAAIS 202 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEE-EECSCSCCSSCCCCCBCCCCTTSCCCCEEEEC
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEE-EEccCCcccccccCCccccCCCCCCCCeEEec
Confidence 468999999998721 2 2358899999999 88754321 1 123579999999
Q ss_pred hhhHHHHHHHHhcCCCCeEEE
Q 044745 458 EDNFNSIYSYLKSTKKPEANI 478 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~i 478 (753)
.++++.|...+..+...++++
T Consensus 203 ~~da~~L~~~l~~g~~~~v~l 223 (444)
T 3iib_A 203 NPDADLINAMLKRDKEVVISL 223 (444)
T ss_dssp HHHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEE
Confidence 999999999998876666666
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=0.69 Score=50.86 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCC
Q 044745 488 EAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPL 526 (753)
Q Consensus 488 ~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~ 526 (753)
..+.++.||++||.. ||+|||++|+++++.+
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 347799999999966 9999999999998754
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.08 E-value=1.9 Score=37.20 Aligned_cols=66 Identities=6% Similarity=0.095 Sum_probs=47.6
Q ss_pred eEEEEEEEEecCCCCeeEEEEEecCC-ceEEEEEEcCeEEEeeCCcEEEEEEEEEeccCCCCCeEEEEEEEE
Q 044745 672 TINFPRTVTNVGLANSTYKAKILQNS-KIVSIKVVPESLSFKSLNEKKSFSVTVTGKGLPNGAIVSTSLMWS 742 (753)
Q Consensus 672 ~~~~~rtvtn~~~~~~~y~~~~~~~~-g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 742 (753)
..+.+.+++|.|+.+..|+....... + ...+++|..-.+ ++|++++++|+|.+.. .+. +.-.|++.
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~-~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~g~-f~~~i~v~ 93 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALG-ACFVFSPKEGII-EPSGVQAIQISFSSII--LGN-FEEEFLVN 93 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHH-HHCEEESSEEEE-CTTBCCEEEEEECCCC--CEE-EEEEECEE
T ss_pred EEEEEEEEEECCcceEEEEEecCCcccc-CcEEEECCcCEE-CCCCEEEEEEEEECCC--cce-EEEEEEEE
Confidence 45556789999999999998432111 1 246778999999 7899999999999975 233 44556664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 753 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 5e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-13 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 4e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.004 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-07 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 8e-04 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 6e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.001 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 150 bits (380), Expect = 5e-40
Identities = 89/468 (19%), Positives = 163/468 (34%), Gaps = 75/468 (16%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+ + +IDSG + N + G T +
Sbjct: 22 GNRTICIIDSGYDRSHNDLNA-----------------------NNVTGTNNSGTGN--W 56
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
+ HGTH A T + + GV +A I KV + ++
Sbjct: 57 YQPGNNNAHGTHVAGTIAAI-ANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSS 109
Query: 271 ILGAFDDAIADG-VDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG 329
++ A D + G +++T+SLGG + ++ + + + L + +AGN+G
Sbjct: 110 LVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGV----LLIAAAGNAGDSSY 165
Query: 330 STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPC 389
S + +MSVAA +++ +FS + +
Sbjct: 166 SYPASYDSVMSVAAVDSNL-----------------DHAAFSQYTDQVEISGPGEAILST 208
Query: 390 ESDFDPQLCT---DGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVS 446
+ + +L GQ + + + A A G+++ V S
Sbjct: 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFS 268
Query: 447 SVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEA-PVVADFSSRGPNEIVP 505
N N + + + I ST+A K + A ++ +S P P
Sbjct: 269 CG--------NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP 320
Query: 506 DIL--KPDISAPGVDILAAF----SPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAA 559
++ DI+ P V + A S ++ + +GTSM+ PH +GVA
Sbjct: 321 FLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVAT 380
Query: 560 YVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
V S+HP+ S S +++A+ TA ++ + + G G IN V A
Sbjct: 381 LVWSYHPECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAK 425
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 79.7 bits (195), Expect = 5e-16
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 510 PDISAPGVDILAAFSPLGAVSDDPEDKRQA-----KFNVVSGTSMSCPHAAGVAAYVKSF 564
+ APGV IL+ ++ + ++ ++ GTSM+ PH GV A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 565 HPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYE 614
P+ P I+ + TA+ N + + G G + A+ L +
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGN---GWDHDTGYGLVKLDAALQGPLPTQ 444
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 52/323 (16%), Positives = 99/323 (30%), Gaps = 76/323 (23%)
Query: 64 EYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPS 123
Y S+ I++ V G +E ++ NG K ++ K +++G+ V PS
Sbjct: 37 GYNDRSEVDKIVKAVNGKVVLELPQIKVVSIKLNGMTVKQAY-DKIKALALKGIRYVEPS 95
Query: 124 RTLQLHTTRSW--------------------------------DFMGLNQSITRKRSVES 151
+L + +G+ Q + + + +
Sbjct: 96 YKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGT 154
Query: 152 DIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGN 211
+IIV V+D+G+ +G G + + +G
Sbjct: 155 NIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDE----------ELPAGT 192
Query: 212 TARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGC----- 266
+ GTH A T + + G P A+I +
Sbjct: 193 DSSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGY 243
Query: 267 -AETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSG 325
+ + A G ++ S GG ++ +AM GV+ + SAGN+
Sbjct: 244 VGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAF----DYAMEHGVVMVVSAGNNT 299
Query: 326 PFIGSTV-SVAPWLMSVAASNTD 347
+ P ++ VAA +
Sbjct: 300 SDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 68.8 bits (167), Expect = 2e-13
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 398 CTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALN 457
S + G + + GA GS ++ N + V + A A N
Sbjct: 95 LNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGN 154
Query: 458 EDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV 517
N S + K ++++ AV + A FSS G + ++ APG
Sbjct: 155 SGNSGSTNTIGYPAKYD--SVIAVGAVDSNSNR--ASFSSVGA--------ELEVMAPG- 201
Query: 518 DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAI 577
+ + ++GTSM+ PH AG AA + S HP+ S S +++ +
Sbjct: 202 ------------AGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRL 249
Query: 578 MTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
+TA + SS F +G G IN A
Sbjct: 250 SSTATYLGSS------FYYGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
+++ V V+D+GI + GG +F Y TD
Sbjct: 24 ANVKVAVLDTGIQASHPDLNV--------------VGGASFVAGE------AYNTDGNGH 63
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
T G PS + A KV + + +
Sbjct: 64 GTHVAGTVAALDN------------------TTGVLGVAPSVSLYAVKVLNSSGSGSYSG 105
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
I+ + A +G+D+I + + +A A+GV+ + +AGNSG +
Sbjct: 106 IVSGIEWATTNGMDVINM----SLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGST 161
Query: 331 TVSVAPW----LMSVAASNTD 347
P +++V A +++
Sbjct: 162 NTIGYPAKYDSVIAVGAVDSN 182
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 68.0 bits (165), Expect = 4e-13
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 27/116 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FS G DI APGV++ + + S ++GTSM+
Sbjct: 180 RASFSQYGAG--------LDIVAPGVNVQSTYPGSTYAS-------------LNGTSMAT 218
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
PH AG AA VK +P WS I++ + TA + S+ +GSG +N A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN------LYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 37.2 bits (85), Expect = 0.004
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 43/218 (19%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + V V+D+GI + + +GG +F
Sbjct: 24 SGVKVAVLDTGISTHPD-LNI--------------RGGASFVPGE--------------- 53
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
+ +D GHGTH A T G PSA + A KV + ++
Sbjct: 54 PSTQDGNGHGTHVAGT---------IAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSS 104
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
I + A +G+ + +SLG + + + A ++GVL + ++GNSG S
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSIS 160
Query: 331 TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368
+ M+V A++ + G+G +V +N
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVN 198
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 509 KPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDW 568
+ISAPG + + + G +N +SGTSM+ PH +G+AA + + +P
Sbjct: 224 DIEISAPGSSVYSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 569 SPSAIKSAIMTTAWPMNSSKNKDA----EFAFGSGHIN 602
S + ++S + A ++ A ++A G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 492 VADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSC 551
A FSS GP + D+ APGV I S P +K + +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMAS 224
Query: 552 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAV 607
PH AG AA + S HP+W+ + ++S++ T + S F +G G IN A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLINVQAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 50.3 bits (119), Expect = 3e-07
Identities = 52/243 (21%), Positives = 89/243 (36%), Gaps = 46/243 (18%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S++ V VIDSGI GG + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV--------------AGGASMVPSE--------------T 55
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N +D HGTH A T G PSA + A KV + +
Sbjct: 56 NPFQDNNSHGTHVAGT---------VAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSW 106
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
I+ + AIA+ +D+I +SLGG + + + A+A GV+ + +AGN G S
Sbjct: 107 IINGIEWAIANNMDVINMSLGGPSGSAALKAAV----DKAVASGVVVVAAAGNEGTSGSS 162
Query: 331 TV----SVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSK-GKTFPLVDGMDV 385
+ P +++V A ++ +G ++ ++ S+ G + +G +
Sbjct: 163 STVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSM 222
Query: 386 SRP 388
+ P
Sbjct: 223 ASP 225
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 62.6 bits (150), Expect = 5e-11
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 508 LKPDISAPGVDILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD 567
+KPD+ APG IL+A S L S + K+ + GTSM+ P AG A ++
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 568 -----WSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608
PS +K+A++ A + G G + +++N
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYPN---GNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 39.9 bits (91), Expect = 8e-04
Identities = 30/161 (18%), Positives = 42/161 (26%), Gaps = 31/161 (19%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
IV V D+G+ S + KI
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM------------------HEAFRGKITALYALGRT---- 59
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
N A D GHGTH A + +G A + LG +
Sbjct: 60 NNANDTNGHGTHVAGS-------VLGNGSTNKGMAPQANLVFQSIMD--SGGGLGGLPSN 110
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAM 311
+ F A + G I T S G +T D + +
Sbjct: 111 LQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRK 151
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 4e-10
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 537 RQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSK-------- 588
RQ +GTS S P AAG+ A + + + ++ ++ T+ P + +
Sbjct: 249 RQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGV 308
Query: 589 NKDAEFAFGSGHINPVEAVN 608
+ ++G G ++ V
Sbjct: 309 GRKVSHSYGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.9 bits (133), Expect = 7e-09
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 545 SGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAE---------FA 595
GTS + P AAGV + +P+ + ++ + +A + + + D
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 596 FGSGHINPVEAVNPGLVYE 614
+G G I+ + + +E
Sbjct: 321 YGFGKIDAHKLIEMSKTWE 339
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 54.3 bits (129), Expect = 2e-08
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 545 SGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGS 598
SGTSM+ PH AG+AAY+ + + SA + I TA +K + FG+
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA-----NKGDLSNIPFGT 268
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 53.4 bits (127), Expect = 3e-08
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 491 VVADFSSRGPNEIVPDILKPDI----SAPGVDILAAFSPLGAVSDDP-------EDKRQA 539
VVA + G + ++ + D LA+FS G D
Sbjct: 158 VVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGN 217
Query: 540 KFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSG 599
++ +SGTSM+ PH AG+AA + S + I+ AI TA ++ + F G
Sbjct: 218 RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGTY-----FKYG 270
Query: 600 HINPVEAVN 608
IN AV
Sbjct: 271 RINSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 39/195 (20%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + VID+G+ + K+I + +D
Sbjct: 31 SGQEIAVIDTGVDYTHPDL------------------------DGKVIKGYDFVDND--- 63
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
D+ HGTH A A+ G+ RI A + +
Sbjct: 64 YDPMDLNNHGTHVAGIAAAETNNATGIAGMAPN--------TRILAVRALDRNGSGTLSD 115
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
I A A G ++I +SLG ++ + +A KG + + +AGN+G
Sbjct: 116 IADAIIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNKGSVVVAAAGNNGSSTTF 171
Query: 331 TVSVAPWLMSVAASN 345
+ +++V A +
Sbjct: 172 EPASYENVIAVGAVD 186
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 48.9 bits (115), Expect = 1e-06
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 545 SGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPV 604
SGTSM+ PH AGVA + S S S I++AI TA ++ + + G +N
Sbjct: 222 SGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGRVNAY 274
Query: 605 EAV 607
+AV
Sbjct: 275 KAV 277
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 39/197 (19%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
S + ++D+G+ + K++G + +D +
Sbjct: 30 SGAKIAIVDTGVQSNHPDLAG------------------------KVVGGWDFVDNDSTP 65
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
H A+ + N G P A I A +V TA
Sbjct: 66 QNGNGHGTHCAGIAAAVTNNS-----------TGIAGTAPKASILAVRVLDNSGSGTWTA 114
Query: 271 ILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS 330
+ A G +I++SLGG + Q + +A KG + + +AGN+G +
Sbjct: 115 VANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPN 170
Query: 331 TVSVAPWLMSVAASNTD 347
+ ++VA+++ +
Sbjct: 171 YPAYYSNAIAVASTDQN 187
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 39.6 bits (91), Expect = 0.001
Identities = 30/250 (12%), Positives = 66/250 (26%), Gaps = 36/250 (14%)
Query: 151 SDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISG 210
++ VG+I G ++ + G T I
Sbjct: 25 ANTTVGIITIGGVSQTLQDLQQFT---------------------SANGLASVNTQTI-- 61
Query: 211 NTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETA 270
T + + + + G A + + T
Sbjct: 62 QTGSSNGDYSDDQQGQGEWD---------LDSQSIVGSAGGAVQQLLFYMADQSASGNTG 112
Query: 271 ILGAFDDAIAD-GVDIITISLG---GQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGP 326
+ AF+ A++D +I +SLG + T A A+G S+G+ G
Sbjct: 113 LTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGV 172
Query: 327 FIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVS 386
+ + + V V + T + ++ + + + +
Sbjct: 173 YECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWAT 232
Query: 387 RPCESDFDPQ 396
S ++ +
Sbjct: 233 GGGYSVYESK 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 753 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.77 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.59 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.7 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=4.8e-53 Score=493.60 Aligned_cols=361 Identities=22% Similarity=0.250 Sum_probs=268.2
Q ss_pred cCceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHH----HHH--hhcCCCeEEEEe
Q 044745 49 FLMVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHE----RQK--LASMEGVVSVFP 122 (753)
Q Consensus 49 ~~~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~----~~~--L~~~p~V~~v~~ 122 (753)
.+++|||+||+... .+++++++ ..++++.+ ..++.+.++++... .+. +..+|+|++|||
T Consensus 30 ~~~~~iV~~k~~~~--------~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep 94 (671)
T d1r6va_ 30 TEGKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEP 94 (671)
T ss_dssp CTTEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEEC
T ss_pred CCCeEEEEECCccC--------HHHHHHhc------CCEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECc
Confidence 57899999997543 44455544 34677777 56777888876432 222 335799999999
Q ss_pred CceeccccC---------------------------CCcccccccc----ccccCCCCCCCcEEEEEecCCCCCCCCccC
Q 044745 123 SRTLQLHTT---------------------------RSWDFMGLNQ----SITRKRSVESDIIVGVIDSGIWPESESFSD 171 (753)
Q Consensus 123 ~~~~~~~~~---------------------------~s~~~~g~~~----~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d 171 (753)
+...++... .....|+++. +.|....+|+||+|||||||||++||+|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~ 174 (671)
T d1r6va_ 95 SYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEG 174 (671)
T ss_dssp CBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTT
T ss_pred ceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcC
Confidence 865443210 0001123321 344445699999999999999999999985
Q ss_pred CCCCCCCccccccccCCCccccCcceeeeeecC--CCCCCCCCCCCCCCCcchhhcccccCcccccccccccccceeecc
Q 044745 172 EGFGPAPKKWKGACKGGRNFTCNNKIIGARYYT--TDDISGNTARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGV 249 (753)
Q Consensus 172 ~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~--g~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvA 249 (753)
+ ++..+++. .+.....++.|..||||||||||+|... ...+.|||
T Consensus 175 ~------------------------~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~---------~~g~~GvA 221 (671)
T d1r6va_ 175 Q------------------------VIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD---------GKGIVGVA 221 (671)
T ss_dssp T------------------------BCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS---------SSSCCCSC
T ss_pred C------------------------cccCccccccCCCCCCCcCcccCCCCccccceeeeecc---------ccceeeec
Confidence 4 12222221 1111224456788999999999999752 12238999
Q ss_pred cccceeccccccCC-----CC-CCHHHHHHHHHHHHHCCCcEEEeecCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCC
Q 044745 250 PSARIAAYKVCSPE-----LG-CAETAILGAFDDAIADGVDIITISLGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGN 323 (753)
Q Consensus 250 P~A~l~~~kv~~~~-----~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 323 (753)
|+|+|+++|++++. .+ ...+.+++||+||+++|++|||||||+.. ....+..++..+.++|+++|+||||
T Consensus 222 p~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~----~~~~~~~ai~~a~~~gv~vV~aAGN 297 (671)
T d1r6va_ 222 PGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGN 297 (671)
T ss_dssp TTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc----CChHHHHHHHHHHhccCcEEEEEec
Confidence 99999999998641 23 66788999999999999999999999862 3456777788899999999999999
Q ss_pred CCCCC-CCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCC
Q 044745 324 SGPFI-GSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQ 402 (753)
Q Consensus 324 ~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~ 402 (753)
++.+. ...+...|++|+|||++.+.
T Consensus 298 ~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------------------------ 323 (671)
T d1r6va_ 298 NTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------------------ 323 (671)
T ss_dssp CSSSCCCCBTTTSTTCEEEEEEEEET------------------------------------------------------
T ss_pred CCCCccccCCccCCceEEEEEecCCC------------------------------------------------------
Confidence 98764 45567889999999865321
Q ss_pred CCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccce
Q 044745 403 GCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTE 482 (753)
Q Consensus 403 ~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 482 (753)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCC-----CCcccccceeeccccchhHHHHHH
Q 044745 483 AVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDP-----EDKRQAKFNVVSGTSMSCPHAAGV 557 (753)
Q Consensus 483 ~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~-----~~~~~~~y~~~sGTSmAaP~VAG~ 557 (753)
....++.||+|||.. ||+|||++|+++++......... .....+.|..++|||||||||||+
T Consensus 324 -----~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~ 390 (671)
T d1r6va_ 324 -----GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGV 390 (671)
T ss_dssp -----TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHH
T ss_pred -----CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHH
Confidence 013578899999986 99999999999987543221111 112246799999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCCe
Q 044745 558 AAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGL 611 (753)
Q Consensus 558 aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~gl 611 (753)
+|||+|++|+|++.|||++|++||++++..+. +..||||+||+.+|++..+
T Consensus 391 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 391 VAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC---CCCcccChhCHHHHhhCcC
Confidence 99999999999999999999999998877653 6899999999999998544
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=5.6e-49 Score=412.88 Aligned_cols=264 Identities=26% Similarity=0.316 Sum_probs=215.2
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|+++.+|+||+|||||||||++||+|.++ ++..++|.+. ...+.
T Consensus 16 ~~i~~~-~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~------------------------~~~~~~~~~~---~~~~~ 67 (280)
T d1dbia_ 16 QNTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDN---DYDPM 67 (280)
T ss_dssp GGGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTT---BSCCC
T ss_pred hhCCHH-HHHhccCCCCCeEEEEEccCcCCCChhhcCC------------------------eeecccccCC---CCccc
Confidence 445666 9999999999999999999999999999843 4455555332 14567
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|..+|||||||+|+|...+ .+.+.||||+|+|+.+|+++....+...++++||+|++++|++|||+|||...
T Consensus 68 d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~ 139 (280)
T d1dbia_ 68 DLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC 139 (280)
T ss_dssp CSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC
T ss_pred cccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc
Confidence 8999999999999987532 23358999999999999998723388999999999999999999999999872
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
..+....+...+.++|+++|+||||+|......+...|++|+|||.+.+
T Consensus 140 ----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 188 (280)
T d1dbia_ 140 ----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--------------------------- 188 (280)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---------------------------
T ss_pred ----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC---------------------------
Confidence 2344556667888999999999999998777777888999999985422
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
++++.||++||.. |++|||.+|++.....
T Consensus 189 -----------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~~~-------- 217 (280)
T d1dbia_ 189 -----------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITGN-------- 217 (280)
T ss_dssp -----------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETTT--------
T ss_pred -----------------------------------CCcCCcCCCCCcc--------cccCCccceeccccCc--------
Confidence 5678899999976 9999999999987664
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||+|||++|||++. .+++.+||++|++||+++... +..||+|+||+++||+
T Consensus 218 -----~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~~-----~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 218 -----RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISGT-----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTTB-----TTTBSSEECCHHHHHT
T ss_pred -----ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCCC-----CCcCCCCeEcHHHHcC
Confidence 7899999999999999999999995 568999999999999987754 5789999999999986
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=3.9e-49 Score=440.40 Aligned_cols=379 Identities=22% Similarity=0.253 Sum_probs=239.3
Q ss_pred ccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCC
Q 044745 136 FMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARD 215 (753)
Q Consensus 136 ~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D 215 (753)
.++.+ .+|. .+|+||+|||||||||++||+|.++ ++..+++... .+...+.|
T Consensus 10 ~i~a~-~~~~--~~G~gv~VaviDtGid~~Hp~~~~~------------------------~~~~~~~~~~-~~~~~~~d 61 (435)
T d1v6ca_ 10 FVGAT-VLSD--SQAGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGT-GNWYQPGN 61 (435)
T ss_dssp HTTGG-GSCC--TTGGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTS-CCTTCCCS
T ss_pred hcCcc-hhhh--cCCCCcEEEEEcCCCCCCChhhccC------------------------eeeeeccCCC-CCCCCCCC
Confidence 35555 5665 4899999999999999999999853 3333334221 12345778
Q ss_pred CCCCcchhhcccccCcccccccccccccceeeccc--ccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVP--SARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGG 292 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~ 292 (753)
++||||||||||||+..+ ..+.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|||.
T Consensus 62 ~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~ 132 (435)
T d1v6ca_ 62 NNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (435)
T ss_dssp SCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred CCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCC
Confidence 999999999999998521 22389999 899999999887223677789999999986 599999999998
Q ss_pred CCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEe--eEEeccC
Q 044745 293 QNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLV--GYSINSF 370 (753)
Q Consensus 293 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~--g~s~~~~ 370 (753)
.. ....+..++.++.++|+++|+||||+|+...++++..+++|+||+++.+.....+...+....+. |..+...
T Consensus 133 ~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st 208 (435)
T d1v6ca_ 133 SG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (435)
T ss_dssp SC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEE
T ss_pred CC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeee
Confidence 73 23456667778899999999999999998888888999999999987765433222222111110 0000000
Q ss_pred CCC-Cceee-EEeCCCCCCCCC-------CCCCCCCcCC---------------CCCCCccccccccEEEEee-------
Q 044745 371 SSK-GKTFP-LVDGMDVSRPCE-------SDFDPQLCTD---------------GQGCIDSRLAKGKIVICQS------- 419 (753)
Q Consensus 371 ~~~-~~~~~-lv~~~~~~~~~~-------~~~~~~~C~~---------------~~~~~~~~~~~gkiv~~~~------- 419 (753)
... ...+. ............ .......|.. ........++.+++.++.+
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (435)
T d1v6ca_ 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSS 288 (435)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSS
T ss_pred eecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCcccc
Confidence 000 00000 000000000000 0000000000 0011112233444444433
Q ss_pred ---cchhHHHHhcCceEEEEeccCCcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceeccc
Q 044745 420 ---FDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFS 496 (753)
Q Consensus 420 ---~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS 496 (753)
..+.......++.+++ ..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~---------------------------------------------------------~~~~ 311 (435)
T d1v6ca_ 289 YPEINSTKACKTAGAKGII---------------------------------------------------------VYSN 311 (435)
T ss_dssp CTHHHHHHHHHHTTCSEEE---------------------------------------------------------EECC
T ss_pred ceeeeeceeecccCCcceE---------------------------------------------------------Eecc
Confidence 1111222223333322 3344
Q ss_pred CCCCCCC--CCCCCCCceeeCCccEEeccCCCCC----CCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCH
Q 044745 497 SRGPNEI--VPDILKPDISAPGVDILAAFSPLGA----VSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSP 570 (753)
Q Consensus 497 s~GP~~~--~~~~~KPDI~APG~~I~sa~~~~~~----~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~ 570 (753)
+.+|... ..+..||||.+||..|.++...... ............|..|||||||||||||++|||+|+||+|++
T Consensus 312 ~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~ 391 (435)
T d1v6ca_ 312 SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391 (435)
T ss_dssp SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4444332 1345799999999988765321100 000000112357999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCCCCeeeeCChhhHHHHHhc
Q 044745 571 SAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVNPGLVYETFEQDYIIMLCS 626 (753)
Q Consensus 571 ~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~glv~~~~~~~~~~~lc~ 626 (753)
+|||++||+||+++.... .++.||+|+||+.+|++ ||...|.
T Consensus 392 ~~vk~~L~~TA~~~~~~~---~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 392 SQVRAALNATADDLSVAG---RDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp HHHHHHHHHHSBCCSSSS---CBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred HHHHHHHHhhCcccCCCC---CCCCcccceecHHHHHH-----------HHHhcCC
Confidence 999999999999886654 37899999999999954 8887774
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.8e-48 Score=408.12 Aligned_cols=261 Identities=28% Similarity=0.434 Sum_probs=217.4
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|..+++|+||+|||||||||++||+|+. ...++|... ...+.
T Consensus 9 ~~i~~~-~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~--------------------------~~~~~~~~~---~~~~~ 58 (274)
T d1r0re_ 9 PLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLNV--------------------------VGGASFVAG---EAYNT 58 (274)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------------------EEEEECSTT---CCTTC
T ss_pred hhcChH-HHHHcCCCCCCeEEEEECCCCCCCChhhcc--------------------------cCCccccCC---CCCCC
Confidence 456777 899999999999999999999999999962 233444221 14456
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
|.++|||||||||++.... ..+.|+||+|+|+.+|+++. .+ +..++++++++++.+++++|+|+|||..
T Consensus 59 d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~-~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~ 128 (274)
T d1r0re_ 59 DGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNS-SGSGSYSGIVSGIEWATTNGMDVINMSLGGA 128 (274)
T ss_dssp CSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCT-TSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred Ccccccccccccccccccc---------ccccccCCCcEEEEEEEeCC-CCCcCHHHHHHHHHHHHhcCCceeccccccc
Confidence 7899999999999987532 12389999999999999988 55 7789999999999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC----CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEecc
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG----STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINS 369 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~ 369 (753)
. ..........++.++++++|+||||+|.... ..+...+++|+|||.+.+
T Consensus 129 ~----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------- 182 (274)
T d1r0re_ 129 S----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---------------------- 182 (274)
T ss_dssp S----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred c----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC----------------------
Confidence 3 2234455567788999999999999986542 334567889999985432
Q ss_pred CCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccc
Q 044745 370 FSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVV 449 (753)
Q Consensus 370 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 449 (753)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCC
Q 044745 450 SLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAV 529 (753)
Q Consensus 450 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 529 (753)
+.++.||++||. |||+|||.+|+++.+.+
T Consensus 183 ----------------------------------------~~~~~~s~~g~~--------~di~APG~~i~~~~~~~--- 211 (274)
T d1r0re_ 183 ----------------------------------------SNRASFSSVGAE--------LEVMAPGAGVYSTYPTN--- 211 (274)
T ss_dssp ----------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETTT---
T ss_pred ----------------------------------------CCcccccCCCCC--------EEEEecCCCcccccCCC---
Confidence 457889999985 49999999999988764
Q ss_pred CCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..+|+|+||+.+|++
T Consensus 212 ----------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 212 ----------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ----------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCHHHHTC
T ss_pred ----------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCceEcCeecHHHhcC
Confidence 68999999999999999999999999999999999999999988743 5789999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=3.5e-48 Score=406.87 Aligned_cols=261 Identities=26% Similarity=0.371 Sum_probs=222.2
Q ss_pred ccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCC
Q 044745 136 FMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARD 215 (753)
Q Consensus 136 ~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D 215 (753)
.++++ .+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++ ...+.|
T Consensus 17 ~i~a~-~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~------------------------~~~~~~~~~~---~~~~~d 67 (279)
T d1thma_ 17 KIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDN---DSTPQN 67 (279)
T ss_dssp HTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTT---BSCCCC
T ss_pred hCCHH-HHHhcc-CCCCcEEEEEcCCCCCCChhhcCC------------------------eecccccccc---Cccccc
Confidence 45666 899987 999999999999999999999853 4455566332 145678
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
..+|||||||+|++...+ ...+.|+||+|+|+.+|++.. .+ +...+++++|+++++.+++|+|+|||...
T Consensus 68 ~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~-~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~ 138 (279)
T d1thma_ 68 GNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDN-SGSGTWTAVANGITYAADQGAKVISLSLGGTV 138 (279)
T ss_dssp SSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCT-TSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred ccccccccceeeeeccCC--------CccccccCCcceEEEEEEEec-CCCCcHHHHHHHHHHHhhcCCceeccccCccc
Confidence 899999999999998532 233489999999999999987 44 88899999999999999999999999873
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
.......+...+.++|+++|+|+||+|......+...|++++|||++.+
T Consensus 139 ----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~--------------------------- 187 (279)
T d1thma_ 139 ----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------------------- 187 (279)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------------------
T ss_pred ----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC---------------------------
Confidence 3345566777888999999999999998887778888999999986432
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+.++.||++|++. ||.|||.+|+++.+.+
T Consensus 188 -----------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~-------- 216 (279)
T d1thma_ 188 -----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------- 216 (279)
T ss_dssp -----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETTT--------
T ss_pred -----------------------------------CCCccccCCCceE--------EEeeeeeccccccCcc--------
Confidence 4678899999987 9999999999998774
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++... +..||+|+||+.+|++
T Consensus 217 -----~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g~-----~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 217 -----TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHHH
T ss_pred -----cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCCC-----CCcceeeeEcHHHhhC
Confidence 689999999999999999999999665 7999999999999987654 6789999999999975
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=8.6e-48 Score=401.73 Aligned_cols=261 Identities=28% Similarity=0.387 Sum_probs=220.1
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|..+++|+||+||||||||+ +||+|... ..++|... ...+.
T Consensus 9 ~~i~~~-~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~--------------------------~~~~~~~~---~~~~~ 57 (269)
T d1gcia_ 9 SRVQAP-AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR--------------------------GGASFVPG---EPSTQ 57 (269)
T ss_dssp HHTTHH-HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE--------------------------EEEECSTT---CCSCS
T ss_pred hHhCcH-HHHhCCCCCCCeEEEEECCCCC-CCcccCcc--------------------------ccccccCC---CCCcc
Confidence 346777 9999999999999999999998 89999632 23334211 14566
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQN 294 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~ 294 (753)
|.++|||||||||++... .....|+||+|+|+.+|++..........+.++++++..+++++||+|||...
T Consensus 58 d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~ 128 (269)
T d1gcia_ 58 DGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS 128 (269)
T ss_dssp CSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred ccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc
Confidence 889999999999998752 23348999999999999998733378889999999999999999999999872
Q ss_pred CCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCC
Q 044745 295 TLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKG 374 (753)
Q Consensus 295 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 374 (753)
.......+...+.++|++||+||||+|.....++...|++|+||+++.+
T Consensus 129 ----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 177 (269)
T d1gcia_ 129 ----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------------------- 177 (269)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------------------
T ss_pred ----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC---------------------------
Confidence 2234455667889999999999999998877788888999999986432
Q ss_pred ceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEE
Q 044745 375 KTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAV 454 (753)
Q Consensus 375 ~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 454 (753)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCC
Q 044745 455 ALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPE 534 (753)
Q Consensus 455 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 534 (753)
+.++.||++||.. ||+|||.++.++.+..
T Consensus 178 -----------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~-------- 206 (269)
T d1gcia_ 178 -----------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------- 206 (269)
T ss_dssp -----------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT--------
T ss_pred -----------------------------------CCcccccCCCCCc--------eEEEeeecceeccCCC--------
Confidence 4578899999976 9999999999988764
Q ss_pred CcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 535 DKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+++|++
T Consensus 207 -----~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 207 -----TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred -----ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCeEcHHHhcC
Confidence 78999999999999999999999999999999999999999988754 5679999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=8.1e-48 Score=404.54 Aligned_cols=262 Identities=31% Similarity=0.442 Sum_probs=217.8
Q ss_pred cccccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCC
Q 044745 135 DFMGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTAR 214 (753)
Q Consensus 135 ~~~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~ 214 (753)
+.++++ .+|+.+++|+||+|||||||||++||+|+.. ..+++..++ .....
T Consensus 9 ~~i~a~-~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~--------------------------~~~~~~~~~--~~~~~ 59 (281)
T d1to2e_ 9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA--------------------------GGASMVPSE--TNPFQ 59 (281)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--------------------------EEEECCTTC--CCTTC
T ss_pred HHhCcH-HHHHCCCCCCCeEEEEECCCCCCCChhhhhc--------------------------CCccccCCC--CCCCc
Confidence 346666 9999999999999999999999999999632 222332111 12223
Q ss_pred CCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHCCCcEEEeecCCC
Q 044745 215 DIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIADGVDIITISLGGQ 293 (753)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 293 (753)
+..+|||||||||+|... .....|+||+|+|+.+|++.. .+ ...++++++|+|+++.+++|+|+|||..
T Consensus 60 ~~~~HGT~vAgiiag~~~---------~~~~~giAp~a~l~~~kv~~~-~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~ 129 (281)
T d1to2e_ 60 DNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLGGP 129 (281)
T ss_dssp CSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCT-TSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred CcCCCCceeecccccCCC---------CCCcceeecccEEEEEEEeCC-CCCcCHHHHHHHHHHHHhccccccccccCCC
Confidence 467999999999999752 122389999999999999987 55 7888999999999999999999999986
Q ss_pred CCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCC----CccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEecc
Q 044745 294 NTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIG----STVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINS 369 (753)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~ 369 (753)
. ....+..+++.+.++|+++|+||||+|.... ..+...+++|+||+.+.+
T Consensus 130 ~----~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------- 183 (281)
T d1to2e_ 130 S----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------------------- 183 (281)
T ss_dssp C----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred c----chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC----------------------
Confidence 2 3456777788899999999999999987542 345577899999985432
Q ss_pred CCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccc
Q 044745 370 FSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVV 449 (753)
Q Consensus 370 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 449 (753)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCC
Q 044745 450 SLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAV 529 (753)
Q Consensus 450 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 529 (753)
++++.||++||.. |+.|||.+|+++.+.+
T Consensus 184 ----------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~--- 212 (281)
T d1to2e_ 184 ----------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPGN--- 212 (281)
T ss_dssp ----------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETTT---
T ss_pred ----------------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCCC---
Confidence 4578899999976 9999999999988764
Q ss_pred CCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCccccCC
Q 044745 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINPVEAVN 608 (753)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 608 (753)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+.+|++
T Consensus 213 ----------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 213 ----------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp ----------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTS
T ss_pred ----------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCcccHHHHHh
Confidence 68999999999999999999999999999999999999999998753 5679999999999998
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=5.4e-43 Score=372.35 Aligned_cols=285 Identities=26% Similarity=0.315 Sum_probs=216.0
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCC-CCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDD-ISGNTARD 215 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~-~~~~~~~D 215 (753)
++++ .+|..+++|+||+|+|||||||++||+|.++ +...++|.+.. .......|
T Consensus 13 i~~~-~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~------------------------~~~~~~~~~~~~~~~~~~~d 67 (309)
T d2ixta1 13 IYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------------------VEQCKDFTGATTPINNSCTD 67 (309)
T ss_dssp HHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEESSSSSSCEETCCCC
T ss_pred cCCh-hhhccCCCCCCeEEEEEccCCCCCChhHhcc------------------------ccccccccCCCCCCCCCccc
Confidence 4555 8999999999999999999999999999853 44455564332 22244567
Q ss_pred CCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCC-----CcEEEeec
Q 044745 216 IQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADG-----VDIITISL 290 (753)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-----vdVIn~Sl 290 (753)
..+|||||||||+|...+ ....+.||||+|+|+.+|++.....+..++++.+++++++.+ ..|+|+|+
T Consensus 68 ~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~ 140 (309)
T d2ixta1 68 RNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSL 140 (309)
T ss_dssp SSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccc
Confidence 899999999999987532 223348999999999999988733378889999999988653 46899999
Q ss_pred CCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEec
Q 044745 291 GGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSIN 368 (753)
Q Consensus 291 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~ 368 (753)
+... .......+...+.++|+++|+||||++..... .+...+++++|++..........
T Consensus 141 ~~~~----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~--------------- 201 (309)
T d2ixta1 141 GSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY--------------- 201 (309)
T ss_dssp CBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE---------------
T ss_pred cccc----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc---------------
Confidence 8762 23455566677889999999999999876543 34456888888875432100000
Q ss_pred cCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccccccc
Q 044745 369 SFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSV 448 (753)
Q Consensus 369 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 448 (753)
..
T Consensus 202 -----------------------------------------------------------------~~------------- 203 (309)
T d2ixta1 202 -----------------------------------------------------------------RV------------- 203 (309)
T ss_dssp -----------------------------------------------------------------EE-------------
T ss_pred -----------------------------------------------------------------cc-------------
Confidence 00
Q ss_pred ccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCC
Q 044745 449 VSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGA 528 (753)
Q Consensus 449 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~ 528 (753)
........++++|+.. ....||||+|||.+++++.+..
T Consensus 204 --------------------------------------~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~~-- 241 (309)
T d2ixta1 204 --------------------------------------ADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYNG-- 241 (309)
T ss_dssp --------------------------------------CTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTTS--
T ss_pred --------------------------------------cccccccccccccccc--cCCCcceeecCCCceeeecCCC--
Confidence 0012334567777765 6668999999999999987764
Q ss_pred CCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCC----CCCCccCCCCCCc
Q 044745 529 VSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNK----DAEFAFGSGHINP 603 (753)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~----~~~~~~G~G~in~ 603 (753)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+.. ..++.+|+|++|+
T Consensus 242 -----------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 242 -----------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFARV 309 (309)
T ss_dssp -----------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred -----------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcCCccCCCcccCCCEecC
Confidence 689999999999999999999999999999999999999999988664321 1567889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.5e-42 Score=362.10 Aligned_cols=238 Identities=28% Similarity=0.332 Sum_probs=194.2
Q ss_pred CCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhc
Q 044745 146 KRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 146 ~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAG 225 (753)
...+|+||+|+|||||||++||+|.++ +.....+. ..+.|.++|||||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~------------------------~~~~~~~~------~~~~d~~gHGT~VAg 75 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR------------------------AQMVKTYY------YSSRDGNGHGTHCAG 75 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEESS------SCSSCSSSHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC------------------------ceeccCCC------CCcccccCccccccc
Confidence 455899999999999999999999853 11111121 235678899999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCC-------CcEEEeecCCCCCCCC
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADG-------VDIITISLGGQNTLNF 298 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-------vdVIn~SlG~~~~~~~ 298 (753)
||+|.. .|+||+|+|+.+|++........+.+..+++++.... ++|+|+|||..
T Consensus 76 iia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----- 136 (279)
T d2pwaa1 76 TVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----- 136 (279)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----
T ss_pred cccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-----
Confidence 999874 7999999999999988733478888999999988653 45999999976
Q ss_pred cccHHHHHHHHHhhCCcEEEEecCCCCCCCCC-ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCCCCCcee
Q 044745 299 TQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS-TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFSSKGKTF 377 (753)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 377 (753)
..+.+..++.++.++|+++|+||||++.+... .+...|++|+|||++.+
T Consensus 137 ~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~------------------------------ 186 (279)
T d2pwaa1 137 YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------------------------ 186 (279)
T ss_dssp CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------------------------
T ss_pred cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec------------------------------
Confidence 34567777788899999999999999876533 45577899999985432
Q ss_pred eEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccccEEEee
Q 044745 378 PLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSLPAVALN 457 (753)
Q Consensus 378 ~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 457 (753)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCCCCCCCCCCcc
Q 044745 458 EDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLGAVSDDPEDKR 537 (753)
Q Consensus 458 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 537 (753)
+.++.||++||.. ||+|||.+|+++.+.+
T Consensus 187 --------------------------------g~~~~~S~~G~~~--------dv~APG~~i~s~~~~~----------- 215 (279)
T d2pwaa1 187 --------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIGG----------- 215 (279)
T ss_dssp --------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETTT-----------
T ss_pred --------------------------------CCCccccCCCCcc--------ccccccccccccccCC-----------
Confidence 5678899999976 9999999999998764
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCCc
Q 044745 538 QAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHINP 603 (753)
Q Consensus 538 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~ 603 (753)
.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ....|+|++|.
T Consensus 216 --~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-------~~~~g~g~~n~ 271 (279)
T d2pwaa1 216 --STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-------LSNIPFGTVNL 271 (279)
T ss_dssp --EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-------CBSCCTTSCCE
T ss_pred --cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-------CCCCCCCChhh
Confidence 799999999999999999999999999999887775 677886532 35689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.4e-41 Score=362.70 Aligned_cols=302 Identities=26% Similarity=0.285 Sum_probs=225.0
Q ss_pred ccccccccccccC-CCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCC
Q 044745 134 WDFMGLNQSITRK-RSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNT 212 (753)
Q Consensus 134 ~~~~g~~~~~~~~-~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~ 212 (753)
.+++|++ .+|.. |++|+||+|||||||||++||+|.... .| ..++...+.+... ..
T Consensus 5 ~~~~~~~-~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~------------~~~~~~~~~~~~~----~~ 61 (318)
T d1wmda2 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF------------RGKITALYALGRT----NN 61 (318)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT------------TTCEEEEEETTTT----TC
T ss_pred hcccCch-hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc------------CCcEEeecCCCCC----CC
Confidence 3567888 88885 999999999999999999999997431 11 2344444444322 45
Q ss_pred CCCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCC---CCHHHHHHHHHHHHHCCCcEEEee
Q 044745 213 ARDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG---CAETAILGAFDDAIADGVDIITIS 289 (753)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~gvdVIn~S 289 (753)
+.|..||||||||||+|+... ..||||+|+|+.+|+++. .+ .....+..+++++...+++|+|+|
T Consensus 62 ~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 129 (318)
T d1wmda2 62 ANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDS-GGGLGGLPSNLQTLFSQAYSAGARIHTNS 129 (318)
T ss_dssp CCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCT-TSSCTTSCSSHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeee-cccccccchhhHHHHHHHHhcCCceeecc
Confidence 668899999999999997421 289999999999999887 43 344557789999999999999999
Q ss_pred cCCCCCCCCcccHHHHHHHHHhhCCcEEEEecCCCCCCCCCccC--CCCceEEeecccCccceeeeEEeCCCeEEeeEEe
Q 044745 290 LGGQNTLNFTQDVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSI 367 (753)
Q Consensus 290 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~ 367 (753)
||.... .........+...+.++++++|+|+||.|........ ..++++++.+........
T Consensus 130 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------- 192 (318)
T d1wmda2 130 WGAAVN-GAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF---------------- 192 (318)
T ss_dssp CCBCCT-TCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------------
T ss_pred cccccc-cccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc----------------
Confidence 998733 3334455556666789999999999999977655433 456777776643221000
Q ss_pred ccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccc
Q 044745 368 NSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSS 447 (753)
Q Consensus 368 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 447 (753)
. .
T Consensus 193 ------------------------------~--------------------------------------~---------- 194 (318)
T d1wmda2 193 ------------------------------G--------------------------------------S---------- 194 (318)
T ss_dssp ------------------------------C--------------------------------------G----------
T ss_pred ------------------------------c--------------------------------------c----------
Confidence 0 0
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccCCCC
Q 044745 448 VVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFSPLG 527 (753)
Q Consensus 448 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~~~~ 527 (753)
.......+..+|++||.. ....|||+.|||.+|+++.....
T Consensus 195 -------------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~ 235 (318)
T d1wmda2 195 -------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLA 235 (318)
T ss_dssp -------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTC
T ss_pred -------------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEecccccc
Confidence 001124567789999976 77899999999999999876643
Q ss_pred CCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhcCCCCCCCCCCCCCCccCCCCCC
Q 044745 528 AVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFH-----PDWSPSAIKSAIMTTAWPMNSSKNKDAEFAFGSGHIN 602 (753)
Q Consensus 528 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in 602 (753)
..... .......|..++|||||||+|||++|||+|++ +.|++.+||++|++||+++.... .+..||||+||
T Consensus 236 ~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~---~~~~~G~G~ld 311 (318)
T d1wmda2 236 PDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY---PNGNQGWGRVT 311 (318)
T ss_dssp CGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCS---SCTTTTTCBCC
T ss_pred ccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCCC---CCCCeeeceec
Confidence 21111 11223568889999999999999999999974 56899999999999999886654 26789999999
Q ss_pred ccccCC
Q 044745 603 PVEAVN 608 (753)
Q Consensus 603 ~~~Al~ 608 (753)
+.+||+
T Consensus 312 ~~~Al~ 317 (318)
T d1wmda2 312 LDKSLN 317 (318)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999986
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-39 Score=347.57 Aligned_cols=280 Identities=15% Similarity=0.149 Sum_probs=202.3
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDI 216 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~ 216 (753)
+++. .+|..+++|+||+|||||||||++||+|.++-. ..+.++|.++........++
T Consensus 33 in~~-~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 89 (339)
T d2id4a2 33 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC----------------------AEGSWDFNDNTNLPKPRLSD 89 (339)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC----------------------GGGCEETTTTBSCCCCCSTT
T ss_pred cCHH-HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc----------------------cccccccccCCCccCCCccc
Confidence 5555 899999999999999999999999999986411 01123443332233445678
Q ss_pred CCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHHCCCcEEEeecCCCCCC
Q 044745 217 QGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIADGVDIITISLGGQNTL 296 (753)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~ 296 (753)
.+|||||||+|+|....+ ..+.|+||+|+|+.+++... .....++..++.++++. .+|+|+|+|.....
T Consensus 90 ~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~ 158 (339)
T d2id4a2 90 DYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDV-NDIYSCSWGPADDG 158 (339)
T ss_dssp TTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTT-CSEEEECEESCCSS
T ss_pred ccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHHHHhh-CCEEeccCCCCCCc
Confidence 899999999999875332 22389999999999999754 36777788888887665 59999999875221
Q ss_pred CCc-------ccH-HHHHHHHHhhCCcEEEEecCCCCCCCCCcc--C--CCCceEEeecccCccceeeeEEeCCCeEEee
Q 044745 297 NFT-------QDV-IAIGSFHAMAKGVLTLHSAGNSGPFIGSTV--S--VAPWLMSVAASNTDRLFVDKVVLGSGQTLVG 364 (753)
Q Consensus 297 ~~~-------~~~-~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g 364 (753)
... ... ...+...+..+|+++|+||||++....... . ..+.+++|++++.
T Consensus 159 ~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 220 (339)
T d2id4a2 159 RHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------------------ 220 (339)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT------------------
T ss_pred ccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc------------------
Confidence 111 111 223334556799999999999875432221 1 2233444443221
Q ss_pred EEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCccc
Q 044745 365 YSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNK 444 (753)
Q Consensus 365 ~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 444 (753)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEEeccC
Q 044745 445 VSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDILAAFS 524 (753)
Q Consensus 445 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~sa~~ 524 (753)
.+..+.||++|+.. ...++..+||..+.+...
T Consensus 221 --------------------------------------------~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~ 252 (339)
T d2id4a2 221 --------------------------------------------KDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDI 252 (339)
T ss_dssp --------------------------------------------TSCCCTTCCCCTTE----EEEEECSBTTBCEEEECS
T ss_pred --------------------------------------------cccccccccccCcc----ceeeeeeccccccceecc
Confidence 24456667777643 345578889999988766
Q ss_pred CCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCC---------CCCCc
Q 044745 525 PLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNK---------DAEFA 595 (753)
Q Consensus 525 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~---------~~~~~ 595 (753)
.+ ..|..++|||||||||||++|||+|++|+|++.|||.+|+.||++++..... ..+..
T Consensus 253 ~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~ 320 (339)
T d2id4a2 253 NG------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320 (339)
T ss_dssp TT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTT
T ss_pred CC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCC
Confidence 55 4788999999999999999999999999999999999999999987654211 13567
Q ss_pred cCCCCCCccccCC
Q 044745 596 FGSGHINPVEAVN 608 (753)
Q Consensus 596 ~G~G~in~~~Al~ 608 (753)
||||+||+.+||+
T Consensus 321 ~G~G~ln~~~Av~ 333 (339)
T d2id4a2 321 YGFGKIDAHKLIE 333 (339)
T ss_dssp TBTCBCCHHHHHH
T ss_pred ccchhhCHHHHHH
Confidence 9999999999987
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-38 Score=340.49 Aligned_cols=276 Identities=17% Similarity=0.168 Sum_probs=187.3
Q ss_pred cccccccccCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCC---CCCCCCC
Q 044745 137 MGLNQSITRKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTD---DISGNTA 213 (753)
Q Consensus 137 ~g~~~~~~~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~---~~~~~~~ 213 (753)
++++ .+|..+.+|+||+|||||||||++||+|.++-. .+..| .+.+. .......
T Consensus 24 in~~-~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~----------~~~~~~~~~~~~~~~ 80 (334)
T d1p8ja2 24 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF----------DVNDQDPDPQPRYTQ 80 (334)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE----------ETTTTBSCCCCCCCT
T ss_pred CCHH-HHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc----------cccCCCCcccccccc
Confidence 4555 899999999999999999999999999985410 01111 11111 1122345
Q ss_pred CCCCCCcchhhcccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHHH-CCCcEEEeecCC
Q 044745 214 RDIQGHGTHTASTASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAIA-DGVDIITISLGG 292 (753)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~gvdVIn~SlG~ 292 (753)
.|..+|||||||||++...++. ...|+||+++++.+|+... ...+.+.++.++++ ++++++|+|||.
T Consensus 81 ~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~n~S~g~ 148 (334)
T d1p8ja2 81 MNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG----EVTDAVEARSLGLNPNHIHIYSASWGP 148 (334)
T ss_dssp TCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS----CCCHHHHHHHHTSCTTTCCEEEECCBS
T ss_pred ccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc----cccchHHHHHHHhhhcCCcEEeCCCCC
Confidence 5789999999999999864321 1289999999999998654 23445567777665 689999999997
Q ss_pred CCCCCCcc--------cHHHHHHHHHhhCCcEEEEecCCCCCCCCCccC----CCCceEEeecccCccceeeeEEeCCCe
Q 044745 293 QNTLNFTQ--------DVIAIGSFHAMAKGVLTLHSAGNSGPFIGSTVS----VAPWLMSVAASNTDRLFVDKVVLGSGQ 360 (753)
Q Consensus 293 ~~~~~~~~--------~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVga~~~~~~~~~~~~~~~~~ 360 (753)
........ ..+..+...+..+|+++|+||||++........ ..+.+++|++...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------- 215 (334)
T d1p8ja2 149 EDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF------------- 215 (334)
T ss_dssp CCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-------------
T ss_pred CCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC-------------
Confidence 63222221 112233344568999999999998765432221 23445555543322
Q ss_pred EEeeEEeccCCCCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccC
Q 044745 361 TLVGYSINSFSSKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDV 440 (753)
Q Consensus 361 ~~~g~s~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~ 440 (753)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCc---
Q 044745 441 EFNKVSSVVSLPAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGV--- 517 (753)
Q Consensus 441 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~--- 517 (753)
+..+.||++|+.. ..+..+||.
T Consensus 216 -------------------------------------------------g~~~~~s~~~~~~------~~~~~~~~~~~~ 240 (334)
T d1p8ja2 216 -------------------------------------------------GNVPWYSEACSST------LATTYSSGNQNE 240 (334)
T ss_dssp -------------------------------------------------SCCCTTCCBCTTC------CEEEECCCSTTS
T ss_pred -------------------------------------------------CceeeecccCCcc------cccccccccccc
Confidence 3344555555543 112333332
Q ss_pred --cEEeccCCCCCCCCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCCCCC----
Q 044745 518 --DILAAFSPLGAVSDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNKD---- 591 (753)
Q Consensus 518 --~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls~~~ik~~L~~TA~~~~~~~~~~---- 591 (753)
.+.+... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||++........
T Consensus 241 ~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~ 307 (334)
T d1p8ja2 241 KQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG 307 (334)
T ss_dssp CCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT
T ss_pred ccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccC
Confidence 2222221 146889999999999999999999999999999999999999998775533211
Q ss_pred ----CCCccCCCCCCccccCC
Q 044745 592 ----AEFAFGSGHINPVEAVN 608 (753)
Q Consensus 592 ----~~~~~G~G~in~~~Al~ 608 (753)
.+..||+|+||+.+||+
T Consensus 308 ~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 308 VGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp TSCEEBTTTBTCBCCHHHHHH
T ss_pred CCcccCCCCcceEeCHHHHHH
Confidence 24578999999999987
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=2.2e-31 Score=287.48 Aligned_cols=306 Identities=15% Similarity=0.128 Sum_probs=184.6
Q ss_pred cCCCCCCCcEEEEEecCCCCCCCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhh
Q 044745 145 RKRSVESDIIVGVIDSGIWPESESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTA 224 (753)
Q Consensus 145 ~~~~~G~GV~VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVA 224 (753)
.++++|+||+|||||||||++||+|.+. |+. + +.......+.|..+|+||++
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------------------~-~~~~~~~~~~~~~g~~~~~~ 69 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------------------L-GVSAPQVVSVSVDGATNQPT 69 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------------------T-TCCCCCEEEEESTTCCCCCC
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------------------c-CCCCCCCceeCCCCCCCCCC
Confidence 3689999999999999999999999742 100 0 00000123446789999999
Q ss_pred cccccCcccccccccccccceeecccccceeccccccCCCCCCHHHHHHHHHHHH---HCCCcEEEeecCCCCCCC--Cc
Q 044745 225 STASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELGCAETAILGAFDDAI---ADGVDIITISLGGQNTLN--FT 299 (753)
Q Consensus 225 Giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~---~~gvdVIn~SlG~~~~~~--~~ 299 (753)
+++++...... .....+.||||+|+|+.+|+... ...++.++++++ +.+++|||+|||...... ..
T Consensus 70 g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~ 140 (357)
T d1t1ga_ 70 GDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT-----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPAS 140 (357)
T ss_dssp SCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS-----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHH
T ss_pred Ccccccccccc----CCcccceeecccCeEEEEecccC-----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccch
Confidence 99876542211 01123489999999999999654 234455566555 468999999999762111 12
Q ss_pred ccHHHHHHHHHhhCCcEEEEecCCCCCCCCC--------ccCCCCceEEeecccCccceeeeEEeCCCeEEeeEEeccCC
Q 044745 300 QDVIAIGSFHAMAKGVLTLHSAGNSGPFIGS--------TVSVAPWLMSVAASNTDRLFVDKVVLGSGQTLVGYSINSFS 371 (753)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 371 (753)
...+......+..+|+++|+|+||+|..... .....+++++|++....... +... ..+
T Consensus 141 ~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~-~~~----- 206 (357)
T d1t1ga_ 141 IAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GRIE-RET----- 206 (357)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SCEE-EEE-----
T ss_pred HHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cccc-cce-----
Confidence 3345566667788999999999999854322 22356788888875432100 0000 000
Q ss_pred CCCceeeEEeCCCCCCCCCCCCCCCCcCCCCCCCccccccccEEEEeecchhHHHHhcCceEEEEeccCCcccccccccc
Q 044745 372 SKGKTFPLVDGMDVSRPCESDFDPQLCTDGQGCIDSRLAKGKIVICQSFDGFNEVHKAGAEGSVSLNDVEFNKVSSVVSL 451 (753)
Q Consensus 372 ~~~~~~~lv~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~gkiv~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 451 (753)
..... .. .. ....+.- ...
T Consensus 207 ---------~~~~~-------------------~~-------------------~~-~~~~g~s-~~~------------ 225 (357)
T d1t1ga_ 207 ---------VWNDG-------------------PD-------------------GG-STGGGVS-RIF------------ 225 (357)
T ss_dssp ---------ECBCH-------------------HH-------------------HC-BCCCEEC-SSS------------
T ss_pred ---------ecccc-------------------cc-------------------cc-cccCCcc-ccc------------
Confidence 00000 00 00 0000000 000
Q ss_pred cEEEeehhhHHHHHHHHhcCCCCeEEEccceeecCCCCCceecccCCCCCCCCCCCCCCceeeCCccEE--eccCCCCCC
Q 044745 452 PAVALNEDNFNSIYSYLKSTKKPEANILSTEAVKDSEAPVVADFSSRGPNEIVPDILKPDISAPGVDIL--AAFSPLGAV 529 (753)
Q Consensus 452 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~~KPDI~APG~~I~--sa~~~~~~~ 529 (753)
............+++.+++. .++.|||+.+++.... +....
T Consensus 226 -------------------------------~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~---- 268 (357)
T d1t1ga_ 226 -------------------------------PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID---- 268 (357)
T ss_dssp -------------------------------CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET----
T ss_pred -------------------------------ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC----
Confidence 00001123456677777765 8999999999976544 33333
Q ss_pred CCCCCCcccccceeeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHhcCCCCCCCC------------CCCCCC
Q 044745 530 SDDPEDKRQAKFNVVSGTSMSCPHAAGVAAYVKSFHPD---WSPSAIKSAIMTTAWPMNSSK------------NKDAEF 594 (753)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---ls~~~ik~~L~~TA~~~~~~~------------~~~~~~ 594 (753)
+.|..++|||||||||||++|||+|+++. +...+++++...+.+++.... .+.++.
T Consensus 269 ---------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~ 339 (357)
T d1t1ga_ 269 ---------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDP 339 (357)
T ss_dssp ---------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBT
T ss_pred ---------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCC
Confidence 47999999999999999999999998643 334445444333333321100 111467
Q ss_pred ccCCCCCCccccCC
Q 044745 595 AFGSGHINPVEAVN 608 (753)
Q Consensus 595 ~~G~G~in~~~Al~ 608 (753)
.+|+|++|+.++++
T Consensus 340 ~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 340 CTGLGSPIGIRLLQ 353 (357)
T ss_dssp TTBTCEECHHHHHH
T ss_pred CccCchhhHHHHHH
Confidence 89999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=4.3e-29 Score=271.31 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=115.4
Q ss_pred CCCCCCcEEEEEecCCCCC-CCCccCCCCCCCCccccccccCCCccccCcceeeeeecCCCCCCCCCCCCCCCCcchhhc
Q 044745 147 RSVESDIIVGVIDSGIWPE-SESFSDEGFGPAPKKWKGACKGGRNFTCNNKIIGARYYTTDDISGNTARDIQGHGTHTAS 225 (753)
Q Consensus 147 ~~~G~GV~VaVIDtGid~~-Hp~f~d~g~~~~~~~w~g~~~~~~~f~~n~kl~g~~~~~g~~~~~~~~~D~~gHGThVAG 225 (753)
..+|+||+|||||+|.++. |+||..- |+ ...+.... . .......+..+||||+++
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f--------~~-----------~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 76 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQF--------TS-----------ANGLASVN-T----QTIQTGSSNGDYSDDQQG 76 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHH--------HH-----------HTTCCCCC-E----EEEECSCTTSCCCBCHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHH--------HH-----------hcCCCCCC-C----CeecCCCCCCCCCCCCCc
Confidence 4589999999999998764 6666410 00 00000000 0 000122346789999999
Q ss_pred ccccCcccccccccccccceeecccccceeccccccCCCC-CCHHHHHHHHHHHHHC-CCcEEEeecCCCCC---CCCcc
Q 044745 226 TASGNEVKDASFFGVGQGTARGGVPSARIAAYKVCSPELG-CAETAILGAFDDAIAD-GVDIITISLGGQNT---LNFTQ 300 (753)
Q Consensus 226 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~-gvdVIn~SlG~~~~---~~~~~ 300 (753)
++.+.. ....+.||||+|+|+.+|++.+ .+ ...++++++|+||+++ +++|||+|||.... .....
T Consensus 77 ~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~-~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~ 146 (369)
T d1ga6a_ 77 QGEWDL---------DSQSIVGSAGGAVQQLLFYMAD-QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTL 146 (369)
T ss_dssp HHHHHH---------HHHHHHHHTTSCEEEEEEEEEC-TTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHH
T ss_pred ceeecc---------ccccccccccCceEEEEEEeCC-CCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHH
Confidence 987653 2223489999999999999887 44 7778999999999964 79999999997521 12334
Q ss_pred cHHHHHHHHHhhCCcEEEEecCCCCCCCC-------------CccCCCCceEEeecccC
Q 044745 301 DVIAIGSFHAMAKGVLTLHSAGNSGPFIG-------------STVSVAPWLMSVAASNT 346 (753)
Q Consensus 301 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~~p~vitVga~~~ 346 (753)
+.+..++.++.++|++||+||||+|.... ..+...|++++|+++..
T Consensus 147 ~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 147 QAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 55677778888999999999999986432 12335689999998653
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1.3e-08 Score=80.68 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=55.8
Q ss_pred ceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEeCceecc
Q 044745 51 MVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYKRSFNGFAAKLTDHERQKLASMEGVVSVFPSRTLQL 128 (753)
Q Consensus 51 ~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (753)
++|||.||+... ......+..+++ ..+.++.+.|+ .||||+++|++++++.|+++|+|.+||+|..++.
T Consensus 2 ~~YIV~fK~~~~--~~~~~~~~~~v~------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 2 KKYIVGFKQTMS--AMSSAKKKDVIS------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp EEEEEEECSSSS--CCSHHHHHHHHH------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CcEEEEECCCCC--hHHHHHHHHHHH------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 689999999865 333444444443 33568999995 7999999999999999999999999999998753
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.59 E-value=5.2e-08 Score=77.36 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=50.6
Q ss_pred ceEEEEecccCCCCCcchhhHHHHHHHHhCCCCccceEEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eEEEEeCc
Q 044745 51 MVHIVYLGSLFRGEYETSSQHQSILQEVIGDSSVENVLVRSYK-RSFNGFAAKLTDHERQKLASMEG--VVSVFPSR 124 (753)
Q Consensus 51 ~~yIV~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~-~~~~g~s~~~~~~~~~~L~~~p~--V~~v~~~~ 124 (753)
++|||.||+... ......+..++... ..++.+.|. ..|+||+++++++.++.|+++|+ |.+||+|.
T Consensus 3 G~YIVvlK~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 3 GKFIVIFKNDVS--EDKIRETKDEVIAE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp EEEEEEECTTCC--HHHHHHHHHHHHHH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred ccEEEEECCCCC--HHHHHHHHHHHHhc------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 899999999764 22333344444443 346777786 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.70 E-value=0.022 Score=47.22 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=57.2
Q ss_pred CCCCcEEeeeCCCCceeEEEEEEEEecCCCCe-eEEEEEecCCceEEEEEEcCeEEEeeCCcEEEEEEEEEecc-CCCCC
Q 044745 656 LNYPSMAAQVSPGKSFTINFPRTVTNVGLANS-TYKAKILQNSKIVSIKVVPESLSFKSLNEKKSFSVTVTGKG-LPNGA 733 (753)
Q Consensus 656 ln~ps~~~~~~~~~~~~~~~~rtvtn~~~~~~-~y~~~~~~~~g~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~ 733 (753)
|..|++.+.-. ...+++.+|+|.|.... .-++.+..|.| =+++ +....+ ++|++++++++|+++. ...+.
T Consensus 6 ~t~p~~~v~pG----~~~~~~vtVtN~g~~~~~~~~~~~~~P~G-W~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEPG----QQVTVPVAVTNQSGIAVPKPSLQLDASPD-WQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGR 77 (103)
T ss_dssp EECCCEEECTT----CEEEEEEEEECCSSSCBSSCEEEEECCTT-SEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEE
T ss_pred ccCcceeeCCC----CeEEEEEEEEeCCCCceeeeeEEEcCCCC-cccc--Ccceee-CCCCcEEEEEEEECCCCCCCce
Confidence 45577766432 48889999999997654 35677888998 6654 555556 7999999999999976 44566
Q ss_pred eEEEEEEEECCC
Q 044745 734 IVSTSLMWSDGN 745 (753)
Q Consensus 734 ~~~G~~~~~~~~ 745 (753)
|... ++.+++.
T Consensus 78 Y~i~-~~a~~~~ 88 (103)
T d1w8oa1 78 YRVG-ATLRTSA 88 (103)
T ss_dssp EEEE-EEEEETT
T ss_pred EEEE-EEEEeCC
Confidence 6554 5555433
|