Citrus Sinensis ID: 044757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN
cccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHccHHEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEHHHHHccHHHHHHHccccHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHccEEEEccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
meieqkqaPLIEQFVKQAstlngpgpALVKLIVEAtshpslfafseilsvpnllqlqgteSSVYIDLLRLFAHgtwtdyksnaahlpqlvpdqavKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN
meieqkqaPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKmevkshlqdvkksvhskvn
MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN
**************V****TLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMC**************************
**************************ALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKI*********************************
MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEE************************
*******APLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVH****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
Q94JU3260 COP9 signalosome complex no no 0.982 0.857 0.684 3e-86
Q55BD5259 COP9 signalosome complex yes no 0.779 0.683 0.427 3e-36
Q9H9Q2264 COP9 signalosome complex yes no 0.973 0.837 0.355 1e-33
Q2KI56264 COP9 signalosome complex yes no 0.973 0.837 0.355 1e-33
Q8BV13264 COP9 signalosome complex yes no 0.973 0.837 0.355 2e-33
Q9V4S8278 COP9 signalosome complex yes no 0.889 0.726 0.349 1e-29
Q9CZ04275 COP9 signalosome complex no no 0.916 0.756 0.341 2e-28
Q5R762275 COP9 signalosome complex no no 0.916 0.756 0.336 5e-28
Q9UBW8275 COP9 signalosome complex no no 0.916 0.756 0.336 5e-28
Q7SGS1 417 COP9 signalosome complex N/A no 0.735 0.400 0.329 6e-20
>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1 Back     alignment and function desciption
 Score =  318 bits (814), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/225 (68%), Positives = 185/225 (82%), Gaps = 2/225 (0%)

Query: 1   MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTE 60
           M+IEQKQA +I+Q VK+AST      AL  LI+EATSHPSLFAFSEIL++PN+ QL+GT 
Sbjct: 1   MDIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTT 58

Query: 61  SSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKE 120
            SVY+DLLRLFAHGTW DYK NA  LP L PDQ +KLKQL+VLTLAE NKVL YD L+ E
Sbjct: 59  DSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVE 118

Query: 121 LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180
           L+V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL NM+ +L+NWL
Sbjct: 119 LDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWL 178

Query: 181 DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSK 225
           +TS+N+L  IQDKIKWA+ M E DKKH+ E +  +++VKKS+  K
Sbjct: 179 NTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMK 223
Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q55BD5|CSN7_DICDI COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum GN=csn7 PE=1 SV=1 Back     alignment and function description
>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1 Back     alignment and function description
>sp|Q2KI56|CSN7B_BOVIN COP9 signalosome complex subunit 7b OS=Bos taurus GN=COPS7B PE=2 SV=1 Back     alignment and function description
>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b OS=Mus musculus GN=Cops7b PE=1 SV=1 Back     alignment and function description
>sp|Q9V4S8|CSN7_DROME COP9 signalosome complex subunit 7 OS=Drosophila melanogaster GN=CSN7 PE=1 SV=2 Back     alignment and function description
>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a OS=Mus musculus GN=Cops7a PE=1 SV=2 Back     alignment and function description
>sp|Q5R762|CSN7A_PONAB COP9 signalosome complex subunit 7a OS=Pongo abelii GN=COPS7A PE=2 SV=1 Back     alignment and function description
>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1 SV=1 Back     alignment and function description
>sp|Q7SGS1|CSN7A_NEUCR COP9 signalosome complex subunit 7a OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-7a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
224067485225 predicted protein [Populus trichocarpa] 0.991 1.0 0.731 1e-92
329025154247 COP9 complex subunit 7a [Solanum chacoen 0.982 0.902 0.724 8e-90
224136466223 predicted protein [Populus trichocarpa] 0.982 1.0 0.711 2e-88
118485804259 unknown [Populus trichocarpa] 0.991 0.868 0.704 3e-88
449445513259 PREDICTED: COP9 signalosome complex subu 0.991 0.868 0.678 5e-88
307136429225 cop9 complex subunit 7a [Cucumis melo su 0.991 1.0 0.674 1e-87
359489202247 PREDICTED: COP9 signalosome complex subu 0.903 0.829 0.753 2e-87
147788695225 hypothetical protein VITISV_024935 [Viti 0.903 0.911 0.753 3e-87
255541046275 cop9 complex subunit 7a, putative [Ricin 0.986 0.814 0.690 4e-87
225453392259 PREDICTED: COP9 signalosome complex subu 0.903 0.791 0.753 4e-87
>gi|224067485|ref|XP_002302493.1| predicted protein [Populus trichocarpa] gi|222844219|gb|EEE81766.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 197/227 (86%), Gaps = 2/227 (0%)

Query: 1   MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTE 60
           M+IEQKQA LI+ FV QASTL     AL  LI+EATSHPSLFAFSEILSVP + +LQGTE
Sbjct: 1   MDIEQKQAELIDHFVNQASTLKAS--ALWPLIIEATSHPSLFAFSEILSVPTVSELQGTE 58

Query: 61  SSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKE 120
           +S+Y+D+LRLFAHGTWTDYK+NA HLPQLVPDQ +KLKQL+VLTLAEMNKVL YDQL++E
Sbjct: 59  NSLYLDVLRLFAHGTWTDYKNNAGHLPQLVPDQVLKLKQLTVLTLAEMNKVLPYDQLMQE 118

Query: 121 LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180
           L+V NVRELEDFLINECMY GIV+GKL+QLRRCFEVQFAAGRDLR GQL NM+Q+L+NWL
Sbjct: 119 LDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGNMLQTLSNWL 178

Query: 181 DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSKVN 227
            TSDN+L  IQ+KIKWA++M E DKKH+ +V   +++VKKS+  KV+
Sbjct: 179 ATSDNLLVSIQEKIKWADSMSELDKKHRKDVDDRVEEVKKSLSLKVS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|329025154|gb|AEB71560.1| COP9 complex subunit 7a [Solanum chacoense] Back     alignment and taxonomy information
>gi|224136466|ref|XP_002326867.1| predicted protein [Populus trichocarpa] gi|222835182|gb|EEE73617.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118485804|gb|ABK94750.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445513|ref|XP_004140517.1| PREDICTED: COP9 signalosome complex subunit 7-like [Cucumis sativus] gi|449514708|ref|XP_004164457.1| PREDICTED: COP9 signalosome complex subunit 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136429|gb|ADN34236.1| cop9 complex subunit 7a [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|359489202|ref|XP_003633896.1| PREDICTED: COP9 signalosome complex subunit 7 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788695|emb|CAN69751.1| hypothetical protein VITISV_024935 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541046|ref|XP_002511587.1| cop9 complex subunit 7a, putative [Ricinus communis] gi|223548767|gb|EEF50256.1| cop9 complex subunit 7a, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225453392|ref|XP_002273686.1| PREDICTED: COP9 signalosome complex subunit 7 isoform 1 [Vitis vinifera] gi|297734611|emb|CBI16662.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
TAIR|locus:2205593260 FUS5 "FUSCA 5" [Arabidopsis th 0.982 0.857 0.684 1.8e-78
DICTYBASE|DDB_G0271282259 csn7 "proteasome component reg 0.907 0.795 0.397 2.4e-37
UNIPROTKB|Q2KI56264 COPS7B "COP9 signalosome compl 0.951 0.818 0.359 5.8e-34
UNIPROTKB|E2R501264 COPS7B "Uncharacterized protei 0.951 0.818 0.359 5.8e-34
UNIPROTKB|Q9H9Q2264 COPS7B "COP9 signalosome compl 0.951 0.818 0.359 5.8e-34
MGI|MGI:1349388264 Cops7b "COP9 (constitutive pho 0.951 0.818 0.359 7.4e-34
RGD|1306918322 Cops7b "COP9 signalosome subun 0.951 0.670 0.354 1.5e-33
UNIPROTKB|E1C3R1267 COPS7B "Uncharacterized protei 0.951 0.808 0.345 6e-32
UNIPROTKB|F1NGK0275 COPS7A "Uncharacterized protei 0.916 0.756 0.350 5.4e-31
FB|FBgn0028836278 CSN7 "COP9 complex homolog sub 0.973 0.794 0.337 6.2e-30
TAIR|locus:2205593 FUS5 "FUSCA 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 154/225 (68%), Positives = 185/225 (82%)

Query:     1 MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTE 60
             M+IEQKQA +I+Q VK+AST      AL  LI+EATSHPSLFAFSEIL++PN+ QL+GT 
Sbjct:     1 MDIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTT 58

Query:    61 SSVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKE 120
              SVY+DLLRLFAHGTW DYK NA  LP L PDQ +KLKQL+VLTLAE NKVL YD L+ E
Sbjct:    59 DSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVE 118

Query:   121 LEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLENMMQSLTNWL 180
             L+V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL NM+ +L+NWL
Sbjct:   119 LDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWL 178

Query:   181 DTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSK 225
             +TS+N+L  IQDKIKWA+ M E DKKH+ E +  +++VKKS+  K
Sbjct:   179 NTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMK 223
GO:0005737 "cytoplasm" evidence=ISM
GO:0004708 "MAP kinase kinase activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=ISS
GO:0008180 "signalosome" evidence=TAS;IPI
GO:0009640 "photomorphogenesis" evidence=RCA;TAS
GO:0010387 "signalosome assembly" evidence=IMP
GO:0010388 "cullin deneddylation" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
DICTYBASE|DDB_G0271282 csn7 "proteasome component region PCI (PINT) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KI56 COPS7B "COP9 signalosome complex subunit 7b" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R501 COPS7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9Q2 COPS7B "COP9 signalosome complex subunit 7b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1349388 Cops7b "COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306918 Cops7b "COP9 signalosome subunit 7B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3R1 COPS7B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGK0 COPS7A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0028836 CSN7 "COP9 complex homolog subunit 7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BV13CSN7B_MOUSENo assigned EC number0.35550.97350.8371yesno
Q2KI56CSN7B_BOVINNo assigned EC number0.35550.97350.8371yesno
Q9H9Q2CSN7B_HUMANNo assigned EC number0.35550.97350.8371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_II000624
hypothetical protein (225 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0012044601
SubName- Full=Putative uncharacterized protein; (398 aa)
    • • 0.543
eugene3.01400002
SubName- Full=Putative uncharacterized protein; (306 aa)
    • • 0.464

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam01399100 pfam01399, PCI, PCI domain 7e-11
smart0075388 smart00753, PAM, PCI/PINT associated module 3e-08
smart0008888 smart00088, PINT, motif in proteasome subunits, In 3e-08
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information 
 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 64  YIDLLRLFAHGTWTDYKSNAA---------HLPQLVPDQAVKLKQLSVLTLAEMNKVLSY 114
           Y DLLR F  G  +D++   A          L +L+ D   K+++L++  LA+    +S 
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 115 DQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEV 156
             L K L + +V E+E  L    +  G ++GK++Q+      
Sbjct: 61  SDLAKLLGL-SVDEVEKILSK-LIRDGRIRGKIDQVNGIVVF 100

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
KOG3250258 consensus COP9 signalosome, subunit CSN7 [Posttran 100.0
KOG2753378 consensus Uncharacterized conserved protein, conta 100.0
KOG2908380 consensus 26S proteasome regulatory complex, subun 100.0
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.59
smart0075388 PAM PCI/PINT associated module. 99.57
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.57
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 99.04
KOG2581493 consensus 26S proteasome regulatory complex, subun 98.26
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 96.91
KOG1498439 consensus 26S proteasome regulatory complex, subun 96.85
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 96.67
KOG2758432 consensus Translation initiation factor 3, subunit 96.6
COG5071439 RPN5 26S proteasome regulatory complex component [ 96.03
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 95.98
KOG2688394 consensus Transcription-associated recombination p 95.54
KOG1463411 consensus 26S proteasome regulatory complex, subun 95.18
COG5600413 Transcription-associated recombination protein [DN 94.31
KOG0687393 consensus 26S proteasome regulatory complex, subun 93.05
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 92.91
KOG2072 988 consensus Translation initiation factor 3, subunit 92.2
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 92.16
COG5159421 RPN6 26S proteasome regulatory complex component [ 91.81
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 91.12
COG3355126 Predicted transcriptional regulator [Transcription 90.85
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 87.26
KOG3054299 consensus Uncharacterized conserved protein [Funct 85.65
KOG1076843 consensus Translation initiation factor 3, subunit 84.02
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 83.97
PRK11179153 DNA-binding transcriptional regulator AsnC; Provis 82.39
smart00344108 HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto 82.37
PRK01919169 tatB sec-independent translocase; Provisional 81.48
TIGR02010135 IscR iron-sulfur cluster assembly transcription fa 81.04
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-50  Score=338.47  Aligned_cols=222  Identities=42%  Similarity=0.652  Sum_probs=218.4

Q ss_pred             ChhhhchhhhHHHHHHHhccCCCchHHHHHHHHHHhcCCCceechhhhcChhhhhccCCCchHHHHHHHHHhcCCHhhHH
Q 044757            1 MEIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYK   80 (227)
Q Consensus         1 ~~~~~~~~~~~e~f~~l~~~~~~~~~~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~dy~   80 (227)
                      |.|||++++-+|+|+.+||+.+  |.+...+|.+||.+|++|.|||||.+|+|..|.++.++.+++||++|++|||.||.
T Consensus         1 m~~ek~~~~~~eqfvllak~~k--g~al~~lIsqale~P~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~   78 (258)
T KOG3250|consen    1 MDIEKKQAEIIEQFVLLAKTCK--GEALEELISQALEAPGVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYS   78 (258)
T ss_pred             CCcchhhHHHHHHHHHHHhccc--hhHHHHHHHHHhcCCCeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhh
Confidence            8899999999999999999999  99999999999999999999999999999999998899999999999999999999


Q ss_pred             hhhhcCCCcchHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeec
Q 044757           81 SNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAA  160 (227)
Q Consensus        81 ~~~~~~~~l~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~  160 (227)
                      ...-.+|.|+.+++.||+.++++++++..++|+|..+.+.+.+.+..+||++|| +||+++++.|||||.+|+++|.|+.
T Consensus        79 aea~rlp~Ls~~q~~kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~ii-eamya~IlrGkldqr~q~leV~fai  157 (258)
T KOG3250|consen   79 AEALRLPKLSLAQLNKLKHLTVVSLASFEKCLPYLVLLRLLPSRNVRELEDLII-EAMYADILRGKLDQRNQTLEVDFAI  157 (258)
T ss_pred             hhhhcCCCCCHHHHHhhhcceehhhhhhchhhhHHHHHhhccCCchhHHHHHHH-HHHHHHHHHhhHHhhcceEeechhh
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Q 044757          161 GRDLRHGQLENMMQSLTNWLDTSDNILSVIQDKIKWAETMCEEDKKHKMEVKSHLQDVKKSVHSK  225 (227)
Q Consensus       161 ~R~~~~~q~~~l~~~L~~W~~~~~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (227)
                      +|++++.++.+|...|.+|++.|++++-.|++++.+|++.++.+.+++++.+..+.++||++|..
T Consensus       158 gRdlr~k~i~nm~~TL~~w~~~cenvL~~ie~qv~~anq~~e~~~r~~qq~e~ev~~~kKtlk~~  222 (258)
T KOG3250|consen  158 GRDLRSKDIDNMKYTLDEWCEGCENVLFGIEAQVPRANQSKERASRMSQQDEIEVMNFKKTLKPT  222 (258)
T ss_pred             cccccHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHhhhhhhhhhHHhhhcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999874

>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional Back     alignment and domain information
>smart00344 HTH_ASNC helix_turn_helix ASNC type Back     alignment and domain information
>PRK01919 tatB sec-independent translocase; Provisional Back     alignment and domain information
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3chm_A169 Crystal Structure Of Pci Domain From A. Thaliana Co 4e-68
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9 Signalosome Subunit 7 (Csn7) Length = 169 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 142/170 (83%), Gaps = 2/170 (1%)
Query: 2   EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTES 61
           +IEQKQA +I+Q VK+AST      AL  LI+EATSHPSLFAFSEIL++PN+ QL+GT  
Sbjct: 2   DIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTD 59
Query: 62  SVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKEL 121
           SVY+DLLRLFAHGTW DYK NA  LP L PDQ +KLKQL+VLTLAE NKVL YD L+ EL
Sbjct: 60  SVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVEL 119
Query: 122 EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLEN 171
           +V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL N
Sbjct: 120 DVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 6e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169 Back     alignment and structure
 Score =  172 bits (437), Expect = 6e-55
 Identities = 124/170 (72%), Positives = 142/170 (83%), Gaps = 2/170 (1%)

Query: 2   EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTES 61
           +IEQKQA +I+Q VK+AST      AL  LI+EATSHPSLFAFSEIL++PN+ QL+GT  
Sbjct: 2   DIEQKQAEIIDQLVKRASTCKSE--ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTD 59

Query: 62  SVYIDLLRLFAHGTWTDYKSNAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKEL 121
           SVY+DLLRLFAHGTW DYK NA  LP L PDQ +KLKQL+VLTLAE NKVL YD L+ EL
Sbjct: 60  SVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVEL 119

Query: 122 EVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAGRDLRHGQLEN 171
           +V+NVRELEDFLINECMY GIV+GKL+QL+RCFEV FAAGRDLR GQL N
Sbjct: 120 DVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 100.0
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.49
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.13
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 98.96
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 98.8
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.56
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 98.51
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 98.23
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 97.95
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 95.58
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 94.4
2hzt_A107 Putative HTH-type transcriptional regulator YTCD; 90.43
3r0a_A123 Putative transcriptional regulator; structural gen 89.25
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 89.09
1qbj_A81 Protein (double-stranded RNA specific adenosine D 88.57
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 88.0
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 87.79
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 87.01
2gxg_A146 146AA long hypothetical transcriptional regulator; 86.82
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 86.41
1i1g_A141 Transcriptional regulator LRPA; helix-turn-helix, 86.3
3df8_A111 Possible HXLR family transcriptional factor; APC89 86.04
1z7u_A112 Hypothetical protein EF0647; winged-helix-turn-hel 85.09
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 84.84
1sfx_A109 Conserved hypothetical protein AF2008; structural 84.56
4aik_A151 Transcriptional regulator SLYA; transcription, tra 84.39
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 84.21
4b4t_T274 26S proteasome regulatory subunit RPN12; hydrolase 84.13
4a5n_A131 Uncharacterized HTH-type transcriptional regulato; 83.86
1yyv_A131 Putative transcriptional regulator; reductive meth 82.85
3s2w_A159 Transcriptional regulator, MARR family; structural 82.78
2fsw_A107 PG_0823 protein; alpha-beta structure, helix-turn- 82.67
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 82.49
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 82.14
2dbb_A151 Putative HTH-type transcriptional regulator PH006; 81.96
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 81.64
3lwf_A159 LIN1550 protein, putative transcriptional regulato 81.59
3bja_A139 Transcriptional regulator, MARR family, putative; 81.51
2cfx_A144 HTH-type transcriptional regulator LRPC; transcrip 81.5
3t8r_A143 Staphylococcus aureus CYMR; transcriptional regula 81.49
2p5v_A162 Transcriptional regulator, LRP/ASNC family; NMB057 81.29
2kko_A108 Possible transcriptional regulatory protein (possi 81.21
2cg4_A152 Regulatory protein ASNC; DNA binding, FFRP, LRP fa 81.21
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 80.7
2ia0_A171 Putative HTH-type transcriptional regulator PF086; 80.35
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 80.16
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 80.09
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=8.3e-50  Score=328.55  Aligned_cols=167  Identities=74%  Similarity=1.126  Sum_probs=157.9

Q ss_pred             hhhhchhhhHHHHHHHhccCCCchHHHHHHHHHHhcCCCceechhhhcChhhhhccCCCchHHHHHHHHHhcCCHhhHHh
Q 044757            2 EIEQKQAPLIEQFVKQASTLNGPGPALVKLIVEATSHPSLFAFSEILSVPNLLQLQGTESSVYIDLLRLFAHGTWTDYKS   81 (227)
Q Consensus         2 ~~~~~~~~~~e~f~~l~~~~~~~~~~a~~li~~aL~~p~if~F~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~dy~~   81 (227)
                      +++|++.++||||++|+|+++  +.+|+++|+.||.+|++|+|||||.+|+|++|++++++|+++||++|++||+.+|.+
T Consensus         2 ~~~~~~~~~l~~f~~la~~~~--~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~   79 (169)
T 3chm_A            2 DIEQKQAEIIDQLVKRASTCK--SEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKC   79 (169)
T ss_dssp             --CCCHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHH
Confidence            468999999999999999999  999999999999999999999999999999999989999999999999999999999


Q ss_pred             hhhcCCCcchHHHHHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEeecC
Q 044757           82 NAAHLPQLVPDQAVKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFAAG  161 (227)
Q Consensus        82 ~~~~~~~l~~~~~~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~~~  161 (227)
                      +.+.+|.|++.+.+|||+|||++||..++++||++|+++|+|++.++||+|||++||+.|||+|||||++++|+|+|++|
T Consensus        80 ~~~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~  159 (169)
T 3chm_A           80 NATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAG  159 (169)
T ss_dssp             HGGGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECC
T ss_pred             hHHhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecC
Confidence            99999999999999999999999999999999999999999998899999999779999999999999999999999999


Q ss_pred             CCCCcchHH
Q 044757          162 RDLRHGQLE  170 (227)
Q Consensus       162 R~~~~~q~~  170 (227)
                      |+|+++||.
T Consensus       160 R~l~~~qi~  168 (169)
T 3chm_A          160 RDLRPGQLG  168 (169)
T ss_dssp             TTCCC----
T ss_pred             CccCHHhcc
Confidence            999999996
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Back     alignment and structure
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 Back     alignment and structure
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A Back     alignment and structure
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Back     alignment and structure
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A Back     alignment and structure
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 98.63
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 93.59
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 92.82
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 92.17
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 91.65
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 91.09
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 91.03
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 88.14
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 84.45
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 83.72
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 82.69
d3deua1140 Transcriptional regulator SlyA {Salmonella typhimu 82.35
d1jhfa171 LexA repressor, N-terminal DNA-binding domain {Esc 80.38
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=3.5e-08  Score=69.88  Aligned_cols=63  Identities=13%  Similarity=0.246  Sum_probs=56.3

Q ss_pred             HHHHHHHhhhhhccCccccHHHHHHHhCCCChhHHHHHHHHHhHhcCceEEEecccCcEEEEEee
Q 044757           95 VKLKQLSVLTLAEMNKVLSYDQLLKELEVANVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFA  159 (227)
Q Consensus        95 ~Klr~LtLlsLa~~~~~isy~~I~~~L~i~~~~eVE~lvI~~ai~~gLI~gkIDQ~~~~v~V~~~  159 (227)
                      +.++...|..+++.+..|+++.|++.|+++ .++||.+|. ++|..|.|.|+|||.+++|++..-
T Consensus        14 ~~i~Ehni~~is~~Y~~Isl~~la~~l~l~-~~evE~~l~-~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_          14 RAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             HHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCS
T ss_pred             HHHHHHHHHHHHHhhceeeHHHHHHHHCCC-HHHHHHHHH-HHHhcCeEEEEEeCCCCEEEECCC
Confidence            345556677788889999999999999998 899999999 999999999999999999998754
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure