Citrus Sinensis ID: 044763

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLKIATHL
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHcccccccHHHccccccEEEEcccccEEEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHccEEEEEccccccEEEEccccccHHHHHHHccccccEEEEEEEcccHHHHHccccHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHccccEEEEEcccccEEEEEEccEEEEEEccccEEEcccccccccccccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccEcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccEEEEcccccEEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEccccEEEEEEccccEEEEEccccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLkeitpnhtckrhnnnfaLGTMWNAVNFLHLWvenpnidldrLGYEIErcsgikyptwkVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCrdgnngvlpiafcevqeENLDLWSFFLKNLYEGLHMDYMDYGKGICimcdkdngvdeaaseflpyaqYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWalycmpewakstdiTISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGwdwvhdnitptARQQITQNvieddgwnthsgadpkilTITMNGLSFVVNKELAICScglwqlskipcphtcrcIIHWAALYADFVHDFMTVEVYrstygpgmkelpqiYKWMPqlidivqpplkiathl
Flexible Loop (DISEMBL)
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFvlkeitpnhtckRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSgikyptwkvEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLKIATHL
Low Complexity Region (SEG)
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLKIATHL
Disordered region (IsUnstruct)
***TCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPL******
Disordered Region (DISOPRED)
*ENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLK*****
Disordered Region (DISEMBL)
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLKIATHL
Disordered Region (DISPRO)
***TCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLKIATHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
356576716	750	PREDICTED: uncharacterized protein LOC10	0.940	0.568	0.209	2e-23
356527977	582	PREDICTED: uncharacterized protein LOC10	0.942	0.733	0.225	2e-23
356535187	752	PREDICTED: uncharacterized protein LOC10	0.940	0.566	0.207	8e-23
357132996	748	PREDICTED: uncharacterized protein LOC10	0.933	0.565	0.197	3e-22
224125676	581	predicted protein [Populus trichocarpa]	0.942	0.734	0.194	3e-22
224115958	572	predicted protein [Populus trichocarpa]	0.940	0.744	0.192	1e-21
2880040	754	putative Mutator-like transposase [Arabi	0.940	0.564	0.190	1e-21
225452988	749	PREDICTED: uncharacterized protein LOC10	0.940	0.568	0.200	1e-21
308081269	796	uncharacterized protein LOC100501908 [Ze	0.938	0.533	0.202	2e-21
6175165	757	Mutator-like transposase [Arabidopsis th	0.940	0.562	0.205	7e-21

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/478 (20%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I  NHTC    H  +      W A +   
Sbjct: 211 TRFTAKCASEGCPWRIHAAKLPGVPTFTIRTIHENHTCGGISHLGHQQASVQWVANSVEQ 270

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNE-- 121
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y  +  
Sbjct: 271 RLKENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVK 330

Query: 122 ---------------------------------------MLKID-----SSYKSVMLVAV 137
                                                  +L +D     S Y   +L+A 
Sbjct: 331 RTNPGSIASVYGNPADGCFQRLFISFQASIYGFLNPCRPLLGLDRTYLKSKYLGTLLLAT 390

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EEN D W +FL  L+  L +   +  + + I+ D+  G+ +  
Sbjct: 391 GFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEIHTENMPR-LTILSDRQKGIVDGV 449

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   +++   ++F + ++ +L W A  +     F+ +++ ++  +++  
Sbjct: 450 EANFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAA 509

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+L+   + +      I ++    F
Sbjct: 510 YWIRRIPPRLWATAYF-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWF 568

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A +++ + +     +      D +   IT  G + +V+    
Sbjct: 569 NERRETSMQWT-SILVPSAERRVAEALDRARTYQVLRANDAEFEVITHEGTN-IVDIRNR 626

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W
Sbjct: 627 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 684

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527977|ref|XP_003532582.1| PREDICTED: uncharacterized protein LOC100775909 [Glycine max]

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 194/497 (39%), Gaps = 70/497 (14%)

Query: 10  CECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFALGTMWNAVNFLHLWVE-- 67
            +C+   C W++ A K+     F ++ I   HTC R+ NN   G    +V+++  ++E  
Sbjct: 45  AKCASDGCPWRIRAVKLPNAPTFTIRSIDGTHTCGRNANN---GHHQASVDWIVSFIEER 101

Query: 68  ---NPNIDLDRLGYEIERCSGIKYP---TWKV-----------------------EAIDK 98
              N N     + ++I +  GI  P    W+                        E I K
Sbjct: 102 LRDNINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKK 161

Query: 99  -----IAKFWLRTDHSYG------YERLLHYKNEMLKI--------DSSYKSVMLVAVCR 139
                +A+ +   D+ +       Y  +  + N  L I         S Y S +L A   
Sbjct: 162 TNPGSVAEVFTGADNRFQRFFVSFYASINGFVNGCLPIVGLGGIQLKSKYLSTLLSATSF 221

Query: 140 DGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASE 199
           D + G+ P+AF  V  EN D W++FL  L++ L ++     K I  + D   G+ +A   
Sbjct: 222 DADGGLFPLAFGVVDVENDDSWTWFLSELHKVLEVNTECMPKFI-FLSDGQKGITDAVRR 280

Query: 200 FLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCYKW 259
             P + +  C   +   + ++F ++ +  L W A  +T    F+++M  ++  +    KW
Sbjct: 281 KFPSSSHALCMRHLTESIGKEFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKW 340

Query: 260 LIDRECRTWALYCMPEWAKSTDIT--ISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
           L       WAL       K T      S  E+   W+L   ++ +      I  +    F
Sbjct: 341 LQQFHPSQWALVHF----KGTRFGHLSSNIEEFNKWILDTRELPIIQVIERIHSKLKTEF 396

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
             R L    W    + P+A + +T+ +     +      + +   ++ +  S +VN    
Sbjct: 397 DDRRLKSSSWC-SVLAPSAEKLMTEAIDHASTYQVLRSDEVEFEVLSAD-RSDIVNIGSH 454

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW-- 435
            CSC  WQL+ IPC H    +I        F     T   YR+TY   +  +P   +W  
Sbjct: 455 SCSCRDWQLNGIPCSHATAALISCRKDVYAFTQKCFTAASYRNTYAEAIHHIPGKLEWSK 514

Query: 436 ------MPQLIDIVQPP 446
                 M   I +V+PP
Sbjct: 515 TDDKSSMDDNILVVRPP 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535187|ref|XP_003536130.1| PREDICTED: uncharacterized protein LOC100786116 [Glycine max]

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I  NHTC    H  +      W A +   
Sbjct: 213 TRFTAKCASEGCPWRIHAAKLPGVPTFTIRTIHENHTCGGISHLGHQQASVQWVANSVEQ 272

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNE-- 121
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y  +  
Sbjct: 273 RLKENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVK 332

Query: 122 ---------------------------------------MLKID-----SSYKSVMLVAV 137
                                                  +L +D     S Y   +L+A 
Sbjct: 333 RTNPGSIASVYGNQADGCFQRLFISFQASIYGFLNAFRPLLGLDRTYLKSKYLGTLLLAT 392

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EEN D W +FL  L+  L +   +  + + I+ D+  G+ +  
Sbjct: 393 GFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEIHTENMLR-LTILSDRQKGIVDGV 451

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   +++   ++F + ++ +L W A  +     F+ +++ ++  +++  
Sbjct: 452 EASFPTAFHGFCMQHLSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAA 511

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+L+   + +      I ++    F
Sbjct: 512 YWIRRIPPRLWATAYF-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWF 570

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A +++ + +     +      D +   I+  G + +V+    
Sbjct: 571 NERRETSMQWT-SILVPSAERRVAEALDRARTYQVLRANDAEFEVISHEGTN-IVDIRNR 628

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W
Sbjct: 629 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357132996|ref|XP_003568114.1| PREDICTED: uncharacterized protein LOC100835098 isoform 1 [Brachypodium distachyon] gi|357132998|ref|XP_003568115.1| PREDICTED: uncharacterized protein LOC100835098 isoform 2 [Brachypodium distachyon]

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/482 (19%), Positives = 189/482 (39%), Gaps = 59/482 (12%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I  NH+C    H  +      W A     
Sbjct: 207 TRFTAKCAAEGCPWRIHAAKLPGVPTFSIRTILDNHSCVGINHLGHQQASVQWVASTVEE 266

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYP---TWK--------------------------VE 94
              ENP+     +  EI +  GI       W+                          +E
Sbjct: 267 RLRENPHCKPKEILEEIHKSHGITLSYKQAWRGKERIMATVRGSFEEGYRLLPEYCRQIE 326

Query: 95  AID--KIAKFWLRTDHS-------------YGY----ERLLHYKNEMLKIDSSYKSVMLV 135
             +   IA+ +   D +             YG+      L+      LK  + Y   + +
Sbjct: 327 RTNPGSIARIYGNPDDNCFRRLFISFYASIYGFVNACRPLIGLDKTTLK--NKYLGTLFL 384

Query: 136 AVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDE 195
           A   DG+  + P+AF  V +EN + W +FL  L+E L  +  +  + + I+ D+  G+ +
Sbjct: 385 ATAFDGDGALFPLAFGVVDDENDENWIWFLSELHELLEKNTENMPR-LTILSDRRKGIVD 443

Query: 196 AASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKN 255
                 P A +  C   ++    ++F ++++ +L W A        F+ +++ ++  ++ 
Sbjct: 444 GVDINFPTAFHGYCMRHLSETFRKEFNNSVLVNLLWEAASVLTATDFETKLLEIEDTSQE 503

Query: 256 CYKWLIDRECRTWA--LYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKET 313
              W+ +   R WA   +  P + +   +T + TE L  W+L    + +      + ++ 
Sbjct: 504 AVAWIREIPPRLWATAFFDGPRYGQ---LTANITESLNSWILDASSLPINQMMECLRRQL 560

Query: 314 AKIFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVN 373
              F +R      W    + PTA +++ + +     +     ++ +   I+ +  + VV+
Sbjct: 561 MTWFNERREASMQWT-TILVPTAERRVQEAIERAQNYRVARASEAEFEVISPHEGTNVVD 619

Query: 374 KELAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIY 433
               +C C  WQL  +PC H    ++        +   F T+ +YR TY   +  +P   
Sbjct: 620 IRNRVCLCRGWQLYGMPCAHGVAALLSCRQNVHRYTESFFTIAMYRKTYSQTIHPIPDKT 679

Query: 434 KW 435
            W
Sbjct: 680 HW 681

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125676|ref|XP_002319648.1| predicted protein [Populus trichocarpa] gi|222858024|gb|EEE95571.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/479 (19%), Positives = 180/479 (37%), Gaps = 52/479 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I  +HTC    H  +      W A +   
Sbjct: 42  TRFTAKCATEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQ 101

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEML 123
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y +++ 
Sbjct: 102 RLKENPNYRPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVK 161

Query: 124 K----------------------------------------------IDSSYKSVMLVAV 137
           +                                              + S Y   + +A 
Sbjct: 162 RTNPGSIASVYGNPTDNCFQHLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLAT 221

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EEN + W +FL  L+  L ++  +  + + I+ D+  G+ +  
Sbjct: 222 GFDGDGALFPLAFGVVDEENDENWMWFLSELHNLLEINTENMPR-LTILSDRQKGIVDGV 280

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   ++    ++F + ++ +L W A  +     F+ +++ ++  +++  
Sbjct: 281 EANFPTAFHGFCMRHLSESFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEVSQDAA 340

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+L+   + +      I ++    F
Sbjct: 341 YWIRRIPPRLWATAYF-EGTRFGHLTANIVESLNTWILEASGLPIIQMVECIRRQLMTWF 399

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A +++ + +     +      + +   I+  G + +V+    
Sbjct: 400 NERRETSMQWT-SILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNR 457

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKWM 436
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W+
Sbjct: 458 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWI 516

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115958|ref|XP_002332013.1| predicted protein [Populus trichocarpa] gi|222875238|gb|EEF12369.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/478 (19%), Positives = 178/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I  +HTC    H  +      W A +   
Sbjct: 36  TRFTAKCASEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQ 95

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEML 123
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y +++ 
Sbjct: 96  RLKENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVK 155

Query: 124 K----------------------------------------------IDSSYKSVMLVAV 137
           +                                              + S Y   + +A 
Sbjct: 156 RTNPGSIASVYGNPTDNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLAT 215

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EE  + W +FL  L+  L ++  +  + + I+ D+  G+ +  
Sbjct: 216 GFDGDGALFPLAFGVVDEETEENWMWFLSELHSLLEINTENMPR-LTILSDRQKGIVDGV 274

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   ++    ++F + ++ +L W A  +     F+ +++ ++  +++  
Sbjct: 275 EANFPTAFHGFCMRHLSESFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAA 334

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+L+   + +      I ++    F
Sbjct: 335 YWIRRIPPRLWATAYF-EGTRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWF 393

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A +++ + +     +      + +   I+  G + +V+    
Sbjct: 394 NERRETSMQWT-SILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNR 451

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W
Sbjct: 452 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2880040|gb|AAC02734.1| putative Mutator-like transposase [Arabidopsis thaliana] gi|20198324|gb|AAM15523.1| putative Mutator-like transposase [Arabidopsis thaliana]

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/478 (19%), Positives = 177/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++  AK+     F ++ I  +HTC    H  +      W A     
Sbjct: 215 TRFTAKCNSEGCPWRIHCAKLPGLPTFTIRTIHGSHTCGGISHLGHHQASVQWVADAVTE 274

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNEML 123
               NP+     +  +I +  GI     +     +     +R  +   Y  L  Y +++ 
Sbjct: 275 RLKVNPHCKPKEILEQIHQVHGITLTYKQAWRGKERIMAAVRGSYEEDYRLLPRYCDQIR 334

Query: 124 K----------------------------------------------IDSSYKSVMLVAV 137
           +                                              + S Y   +L+A 
Sbjct: 335 RTNPGSVAVVHGSPVDGSFQQFFISFQASICGFLNACRPLIGLDRTVLKSKYVGTLLLAT 394

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG   V P+AF  + EEN   W +FL  L + L ++  +  K + I+  +D  + +  
Sbjct: 395 GFDGEGAVFPLAFAIISEENDSSWQWFLSELRQLLEVNSENMPK-LTILSSRDQSIVDGV 453

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   +   +  QF ++++ +L W A +      F+ +M  +   +    
Sbjct: 454 DTNFPTAFHGLCVHCLTESVRTQFNNSILVNLVWEAAKCLTDFEFEGKMGEIAQISPEAA 513

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+ + +   WA YC  E  +   +T + +E L  W+     + +     +I ++   +F
Sbjct: 514 SWIRNIQHSQWATYCF-EGTRFGHLTANVSESLNSWVQDASGLPIIQMLESIRRQLMTLF 572

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A + + + + E   +  H   + +   +T  G  ++V+    
Sbjct: 573 NERRETSMQW-SGMLVPSAERHVLEAIEECRLYPVHKANEAQFEVMTSEG-KWIVDIRCR 630

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  W+L  +PC H    ++        F   + TV  YR TY   +  +P   +W
Sbjct: 631 TCYCRGWELYGLPCSHAVAALLACRQNVYRFTESYFTVANYRRTYAETIHPVPDKTEW 688

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452988|ref|XP_002262784.1| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi|147858253|emb|CAN83921.1| hypothetical protein VITISV_011842 [Vitis vinifera]

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/478 (20%), Positives = 180/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I   HTC    H  +      W A +   
Sbjct: 210 TRFTAKCASDGCPWRIHAAKLPGVPTFTIRTIHEAHTCGGIAHLGHQQASVQWVANSVEQ 269

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNE-- 121
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y ++  
Sbjct: 270 RLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVK 329

Query: 122 ---------------------------------------MLKID-----SSYKSVMLVAV 137
                                                  +L +D     S Y   +L A 
Sbjct: 330 RTNPGSIASVYGNPTDNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFAT 389

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EEN + W +FL  L+  L ++  +  + + I+ D+  G+ +  
Sbjct: 390 GFDGDGALFPLAFGVVDEENDENWMWFLSELHNLLEVNTENMPR-LTILSDRQKGIVDGV 448

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
               P A +  C   +++   ++F + ++ +L W A  +     F+ +++ ++  +++  
Sbjct: 449 EANFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAA 508

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+L+   + +      I ++    F
Sbjct: 509 YWIRRIPPRLWATAYF-EGTRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWF 567

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + P+A +++ + +     +      + +   I+  G + +V+    
Sbjct: 568 NERRETSMQWT-SILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNR 625

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W
Sbjct: 626 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKTLW 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308081269|ref|NP_001183476.1| uncharacterized protein LOC100501908 [Zea mays] gi|238011782|gb|ACR36926.1| unknown [Zea mays]

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/480 (20%), Positives = 180/480 (37%), Gaps = 55/480 (11%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +C+   C W++ AAK+     F ++ I   H+C    H  +      W A     
Sbjct: 254 TRFTAKCAAEGCPWRIHAAKLAGVPTFSIRTIHDTHSCVGISHLGHQQASVQWVATTVEE 313

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYP---TWK--------------------------VE 94
              ENP      +  EI +  GI       W+                          VE
Sbjct: 314 RLRENPQCKPKEILEEIHKAHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVE 373

Query: 95  AID--KIAKFWLRTDHS-------------YGY----ERLLHYKNEMLKIDSSYKSVMLV 135
             +   IA+ +   D S             YG+      L+     +LK  + Y   + +
Sbjct: 374 RTNPGSIARVYGNPDDSCFRRLFISFNASIYGFINACRPLIGLDRTLLK--NKYLGTLFL 431

Query: 136 AVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDE 195
           A   DG+  + P+AF  V EE  + W +FL  L+E L  +  +  + + I+ D+  G+ +
Sbjct: 432 ATGFDGDGDLFPLAFGVVDEETDENWVWFLSELHELLEKNTENMPR-LTILSDRQKGITD 490

Query: 196 AASEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKN 255
                 P A +  C   ++    ++F + ++ +L W A  +     F+ +++ ++  ++ 
Sbjct: 491 GVEFNFPTAFHGYCMRHVSETFKKEFSNPVLVNLLWEAAHALTVIEFETKLLEIEDMSQE 550

Query: 256 CYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAK 315
              W+     R WA     E  +   +T S TE L  W+L    + V      I ++   
Sbjct: 551 AAVWIRHLPPRLWATAYF-EGTRYGHLTASITESLSSWILDAAGLPVTQMMECIRRQLMT 609

Query: 316 IFQKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKE 375
            F +R      W    + P A +++ + +    G+      + +   ++ +  + +V+  
Sbjct: 610 WFNERREASMQWS-TILVPAAERRVQEAIERARGYQVARANEAEFEVVSAHEGTNIVDIR 668

Query: 376 LAICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
              C C  WQL  +PC H    ++        +     TV  YR TY   +  +P    W
Sbjct: 669 NRCCLCRGWQLYGVPCAHGVAALLSCRQNVHRYAESCFTVATYRKTYSQTIHPIPDKTLW 728

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6175165|gb|AAF04891.1|AC011437_6 Mutator-like transposase [Arabidopsis thaliana] gi|18389286|gb|AAL67086.1| putative Mutator transposase [Arabidopsis thaliana] gi|20465953|gb|AAM20162.1| putative mutator transposase [Arabidopsis thaliana]

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/478 (20%), Positives = 179/478 (37%), Gaps = 52/478 (10%)

Query: 6   TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK--RHNNNFALGTMWNAVNFLH 63
           T  + +CS   C W+V AAK+     F ++ I  +H+C    H  +      W A +   
Sbjct: 217 TRFTAKCSSDGCPWRVHAAKLPGVPTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQ 276

Query: 64  LWVENPNIDLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLHYKNE-- 121
              ENPN     +  EI R  GI     +     +     +R     GY  L  Y  +  
Sbjct: 277 RLRENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVK 336

Query: 122 ---------------------------------------MLKID-----SSYKSVMLVAV 137
                                                  +L +D     S Y   +L+A 
Sbjct: 337 RTNPGSIASVYGSPADNCFQRLFISFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLAT 396

Query: 138 CRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAA 197
             DG+  + P+AF  V EEN + W +FL  L+  L  +  +  + + I+ D+  G+ E  
Sbjct: 397 GFDGDGALFPLAFGIVDEENDENWMWFLCELHNLLETNTENMPR-LTILSDRQKGIVEGV 455

Query: 198 SEFLPYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNKATFQQQMMLLQYHNKNCY 257
            +  P A +  C   ++    ++F + L+ +  W A ++     F+ +++ ++  +++  
Sbjct: 456 EQNFPTAFHGFCMRHLSESFRKEFNNTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAA 515

Query: 258 KWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLKYLDMNVANRFTAITKETAKIF 317
            W+     R WA     E  +   +T +  E L  W+ +   + +      I ++    F
Sbjct: 516 YWIRRIPPRLWATAYF-EGQRFGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWF 574

Query: 318 QKRYLVGWDWVHDNITPTARQQITQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELA 377
            +R      W    + PTA +++ + +     +      + +   I+  G + +V+    
Sbjct: 575 NERRETSMQWT-SILVPTAERRVAEALELARTYQVLRANEAEFEVISHEG-NNIVDIRNR 632

Query: 378 ICSCGLWQLSKIPCPHTCRCIIHWAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
            C C  WQL  +PC H    ++        F     TV  YR TY   +  +P    W
Sbjct: 633 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHW 690

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.668	0.385	0.229	2.1e-13
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.304	0.184	0.246	4.8e-09
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.640	0.403	0.194	1.7e-06

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 77/335 (22%), Positives = 133/335 (39%)

Query:   125 IDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGIC 184
             +   YK  +++A   D  N   P+AF   +E ++D W +FL  + E +        +GIC
Sbjct:   389 LGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIREKVTQR-----QGIC 443

Query:   185 IMCDKDNGV----DEAASEFL-PYAQYRQCCFSINNKLMEQFPHALVYSLFW---SACRS 236
             ++   D  +    +E  S++  P+A +R C + + +KL    P    Y++ +    A  S
Sbjct:   444 LISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSP-GFDYNMHFLVDEAGSS 502

Query:   237 TNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLK 296
             + K  F   M  ++  N   +KWL       WAL    +  +   I    TE L     +
Sbjct:   503 SQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWAL--AHDDGRRYGIMRIDTEALFAVCKR 560

Query:   297 YLDMNVANRFTAITKETAKIFQKRY-LVGWDWVHDNI-TPTARQQITQNVIEDDGWN--- 351
             +  + +A     +  +    F + + L      H ++ T    +++ +   + D W    
Sbjct:   561 FRKVAMAGGVMLLFGQLKDAFAESFKLSRGSLKHGDVYTEHVMEKLEEFETDSDTWVITI 620

Query:   352 THSGAD-------PKILTITM----NGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIH 400
             T    D       PK  T  M    +  S +V      C+CG +Q +K PC H       
Sbjct:   621 TPLERDAYQVSMAPKKKTRLMGQSNDSTSGIVQLNDTTCTCGEFQKNKFPCLHALAVCDE 680

Query:   401 WAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
                    +V D  TVE Y  TY      +P++  W
Sbjct:   681 LKINPLQYVDDCYTVERYHKTYSAKFSPVPELSAW 715

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
 Identities = 38/154 (24%), Positives = 69/154 (44%)

Query:   125 IDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGIC 184
             ++  Y+  +++A   D  N   P+AF   +E + D+W +FL  + E +        KG+C
Sbjct:   393 LNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQR-----KGLC 447

Query:   185 IMCDKDNG----VDEAASEFL-PYAQYRQCCFSINN---KLMEQFPHALVYSLFWSACRS 236
             ++          V+E+ S++  P+A +R   FS+N+   +    FP   + +    A  +
Sbjct:   448 LISSPHPDIIAVVNESGSQWQEPWAYHR---FSLNHFYSQFSRVFPSFCLGARIRRAGST 504

Query:   237 TNKATFQQQMMLLQYHNKNCYKWLIDRECRTWAL 270
             + K  F   M  ++  N    KWL       WAL
Sbjct:   505 SQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 65/335 (19%), Positives = 134/335 (40%)

Query:   125 IDSSYKSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGIC 184
             ++  Y+  +++A   D  N   P+AF   +E + D W +F   + E +        K +C
Sbjct:   386 LNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQR-----KDLC 440

Query:   185 IMCD--KD--NGVDEAASEFL-PYAQYRQCCFSINNKLMEQFPHALVYSLFWSACRSTNK 239
             ++    +D    V+E  S +  P+A ++ C   + ++ +  F    + SL   A  +  K
Sbjct:   441 LISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQK 500

Query:   240 ATFQQQMMLLQYHNKNCYKWLIDRECRTWAL-------YCMPEWAKSTDI---------T 283
               F   M  ++  N   +KWL       WAL       Y + E  +             T
Sbjct:   501 EEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGIIEIDREALFAVCRGFPYCT 560

Query:   284 ISATEQLQIW---LLKYLDMNVANRFTAITKETAKIFQKRYLVGWDWVHDNITPTARQQI 340
             ++ T  + +    L    D ++++ ++++ +    ++ + ++   D + + +T +    I
Sbjct:   561 VAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGV--VYTEPFM---DKLEEFMTDSIPYVI 615

Query:   341 TQNVIEDDGWNTHSGADPKILTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIH 400
             TQ  +E D +     ++ +          ++V   ++ C+C  +Q  K PC H       
Sbjct:   616 TQ--LERDSFKVSESSEKE---------EWIVQLNVSTCTCRKFQSYKFPCLHALAVFEK 664

Query:   401 WAALYADFVHDFMTVEVYRSTYGPGMKELPQIYKW 435
                    +V +  TVE Y  TY      +P +  W
Sbjct:   665 LKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAW 699

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.1587.1 hypothetical protein (581 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
pfam10551	88	pfam10551, MULE, MULE transposase domain	5e-09
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	0.002

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 130 KSVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDK 189
            +    AV  D +    P+AF  V +E+ + W++FL+ L        +     + I+ D 
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGL-----KKALGGRPPLTIISDG 59

Query: 190 DNGVDEAASEFLPYAQYRQCCFSINNKLM 218
           D G+ +A  E  P A++R C + I   L 
Sbjct: 60  DKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 379 CSCGLWQLSKIPCPH 393
           CSC  +QLS IPC H
Sbjct: 3   CSCRKFQLSGIPCRH 17

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.9
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.86
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.73
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	99.04
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.44
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.34
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	96.9
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	96.72
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.65
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	94.81
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.61
PF13610	140	DDE_Tnp_IS240: DDE domain	93.25
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	91.37

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=6e-58  Score=483.33  Aligned_cols=392  Identities=13%  Similarity=0.170  Sum_probs=301.9

Q ss_pred             eecCCCceEEEEEEeCCCceEEEEeeCCCceecCCccCCcc--cceeee--------eccccccccC---C-------CC
Q 044763           12 CSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRHNNNFAL--GTMWNA--------VNFLHLWVEN---P-------NI   71 (453)
Q Consensus        12 C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~~~~~~~--~~~~l~--------~~~i~~~~~~---~-------~~   71 (453)
                      |+.+||++++.+++. ..|.|.|+.++.+|||++.+.....  +++...        .+.+.....+   +       .+
T Consensus       156 ~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~r~~~~  234 (846)
T PLN03097        156 CAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGL  234 (846)
T ss_pred             ccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhccccccccchhhcchhhHHHhhhc
Confidence            667899999999874 5578999999999999997543211  111100        0000000000   0       00


Q ss_pred             ---CHHHHHHHHHHHhCCcceeecccccceEEEEeccCCCCcceeEEEE--------ecc--eee-----eecccCCcee
Q 044763           72 ---DLDRLGYEIERCSGIKYPTWKVEAIDKIAKFWLRTDHSYGYERLLH--------YKN--EML-----KIDSSYKSVM  133 (453)
Q Consensus        72 ---~~~~i~~~l~~~~g~~~s~~rak~~gs~~~~~~~~~~~~~f~~~f~--------f~~--pvi-----~l~~~y~~~l  133 (453)
                         -...+++.++++-..++        +=...+..|++  +++.++||        |.+  |||     |.+++|++||
T Consensus       235 ~~gD~~~ll~yf~~~q~~nP--------~Ffy~~qlDe~--~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pf  304 (846)
T PLN03097        235 EAGDTKILLDFFTQMQNMNS--------NFFYAVDLGED--QRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPL  304 (846)
T ss_pred             ccchHHHHHHHHHHHHhhCC--------CceEEEEEccC--CCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEE
Confidence               01111111111111111        22344555666  99999999        555  777     5666779999


Q ss_pred             EEEEEEcCCCCeEEEEEEeeeccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccHHHH
Q 044763          134 LVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSI  213 (453)
Q Consensus       134 l~a~g~d~~~~~~~la~a~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi  213 (453)
                      ..++|+|+|+|.+++||||+.+|+.++|.|+|++|+++|++     +.|.+||||++.+|.+||++|||++.|++|.|||
T Consensus       305 a~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~g-----k~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI  379 (846)
T PLN03097        305 ALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGG-----QAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHI  379 (846)
T ss_pred             EEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCC-----CCCceEEecCCHHHHHHHHHHCCCceehhhHHHH
Confidence            99999999999999999999999999999999999999998     9999999999999999999999999999999999


Q ss_pred             HHHHHhhCC-----ChhHHHHHHHHhh-hhcHHHHHHHHHH-HHhcCHHHHHHHHhc--ccCcEEEeecCCCcccccccc
Q 044763          214 NNKLMEQFP-----HALVYSLFWSACR-STNKATFQQQMML-LQYHNKNCYKWLIDR--ECRTWALYCMPEWAKSTDITI  284 (453)
Q Consensus       214 ~~n~~~~~~-----~~~~~~~~~~~~~-~~~~~ef~~~~~~-l~~~~~~~~~~l~~~--~~~~W~~~~~~~~~~~~~~Tt  284 (453)
                      ++|+.++++     .+.+...|+++++ +.+++||+..|.. |.+++....+||...  .+++|+++|+++.++.|+.||
T Consensus       380 ~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sT  459 (846)
T PLN03097        380 LGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTV  459 (846)
T ss_pred             HHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccc
Confidence            999999985     3589999999886 7899999999988 467799999999996  799999999998888889999


Q ss_pred             chHHHHHHHHHhcc--cCchHHHHHHHHHHHHHHHHHhhh-----------------hcccCCCCCCChhHHHHHHhhhc
Q 044763          285 SATEQLQIWLLKYL--DMNVANRFTAITKETAKIFQKRYL-----------------VGWDWVHDNITPTARQQITQNVI  345 (453)
Q Consensus       285 n~~Es~N~~lk~~r--~~pi~~~~e~i~~~l~~~~~~r~~-----------------~~~~~~~~~~t~~~~~~l~~~~~  345 (453)
                      +++||+|+.|++..  ..++..|++.+.+.+..+..+...                 ..++.+. +|||.+|++||+++.
T Consensus       460 qRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~-iYT~~iF~kFQ~El~  538 (846)
T PLN03097        460 QRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSG-VYTHAVFKKFQVEVL  538 (846)
T ss_pred             cccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHH-HhHHHHHHHHHHHHH
Confidence            99999999999874  567888888877766544432211                 0123345 999999999999999


Q ss_pred             ccCCceeEEc-ccC--ceEEEEEe--CeEEEEEcc----CCceeeCCeecCCCCcchhhHHHHHhhC--Chhhhhhhhcc
Q 044763          346 EDDGWNTHSG-ADP--KILTITMN--GLSFVVNKE----LAICSCGLWQLSKIPCPHTCRCIIHWAA--LYADFVHDFMT  414 (453)
Q Consensus       346 ~s~~~~~~~~-~~~--~~f~V~~~--~~~~~V~l~----~~~CsC~~~~~~giPC~H~lavl~~~~~--~~~~~v~~~y~  414 (453)
                      .+..+.+... .++  ..|.|...  ...|.|..+    ..+|+|++|+..||||+|||+||...++  +|+.||.++||
T Consensus       539 ~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWT  618 (846)
T PLN03097        539 GAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWT  618 (846)
T ss_pred             HhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhch
Confidence            7665544332 222  36888762  456777554    5799999999999999999999999997  99999999999


Q ss_pred             HHHHHh
Q 044763          415 VEVYRS  420 (453)
Q Consensus       415 ~~~~~~  420 (453)
                      +++-..
T Consensus       619 KdAK~~  624 (846)
T PLN03097        619 KDAKSR  624 (846)
T ss_pred             hhhhhc
Confidence            998754

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.90  E-value=1e-24  Score=217.49  Aligned_cols=217  Identities=18%  Similarity=0.237  Sum_probs=174.4

Q ss_pred             cCCCCCHHHHHHHHHHHhC-Ccce---eeccccc--ceEEEEeccCCCCcceeEEEEecceeeeecccC----------C
Q 044763           67 ENPNIDLDRLGYEIERCSG-IKYP---TWKVEAI--DKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSY----------K  130 (453)
Q Consensus        67 ~~~~~~~~~i~~~l~~~~g-~~~s---~~rak~~--gs~~~~~~~~~~~~~f~~~f~f~~pvi~l~~~y----------~  130 (453)
                      --.|++.++|.+.|+..+| ..+|   +.|..+.  ..+..+...+-.+..+        |+|++|+.|          +
T Consensus       111 y~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~~w~~R~L~~~~y--------~~l~iD~~~~kvr~~~~~~~  182 (381)
T PF00872_consen  111 YLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVEAWRNRPLESEPY--------PYLWIDGTYFKVREDGRVVK  182 (381)
T ss_pred             hccccccccccchhhhhhcccccCchhhhhhhhhhhhhHHHHhhhccccccc--------cceeeeeeeccccccccccc
Confidence            4468999999999999999 6666   3332211  0111111111000112        667778766          3


Q ss_pred             ceeEEEEEEcCCCCeEEEEEEeeeccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccH
Q 044763          131 SVMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCC  210 (453)
Q Consensus       131 ~~ll~a~g~d~~~~~~~la~a~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~  210 (453)
                      ..+++|+|+|.+|+..+||+.+.++|+.++|.-||+.|+++ |.     ..|..||+|+++||.+||+++||++.+|.|.
T Consensus       183 ~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R-Gl-----~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~  256 (381)
T PF00872_consen  183 KAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER-GL-----KDILLVVSDGHKGLKEAIREVFPGAKWQRCV  256 (381)
T ss_pred             chhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc-cc-----cccceeeccccccccccccccccchhhhhhe
Confidence            56899999999999999999999999999999999999999 54     7899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCh---hHHHHHHHHhhhhcHHHHHHHHHHHH----hcCHHHHHHHHhcccCcEEEeecCCCccccccc
Q 044763          211 FSINNKLMEQFPHA---LVYSLFWSACRSTNKATFQQQMMLLQ----YHNKNCYKWLIDRECRTWALYCMPEWAKSTDIT  283 (453)
Q Consensus       211 ~Hi~~n~~~~~~~~---~~~~~~~~~~~~~~~~ef~~~~~~l~----~~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~T  283 (453)
                      +|+++|+.++++.+   .+...++.+..+.+.+++...++.+.    ...|++.+++.+...+.|+..-||...+-.+.|
T Consensus       257 vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~T  336 (381)
T PF00872_consen  257 VHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRT  336 (381)
T ss_pred             echhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccccccceeeecchhccccch
Confidence            99999999999754   67788888888888887777777654    457899999999888889988888666777889


Q ss_pred             cchHHHHHHHHHhc
Q 044763          284 ISATEQLQIWLLKY  297 (453)
Q Consensus       284 tn~~Es~N~~lk~~  297 (453)
                      ||.+||+|+.+|+.
T Consensus       337 TN~iEsln~~irrr  350 (381)
T PF00872_consen  337 TNAIESLNKEIRRR  350 (381)
T ss_pred             hhhccccccchhhh
Confidence            99999999999975

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.86  E-value=5.9e-22  Score=158.12  Aligned_cols=88  Identities=30%  Similarity=0.445  Sum_probs=83.2

Q ss_pred             eecccCCceeEE---EEEEcCCCCeEEEEEEeeeccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhc
Q 044763          124 KIDSSYKSVMLV---AVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEF  200 (453)
Q Consensus       124 ~l~~~y~~~ll~---a~g~d~~~~~~~la~a~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~v  200 (453)
                      |.+++| |+++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++.     . |.+||||++.|+.+||+++
T Consensus         3 ~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-----~-p~~ii~D~~~~~~~Ai~~v   75 (93)
T PF10551_consen    3 YKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-----K-PKVIISDFDKALINAIKEV   75 (93)
T ss_pred             cccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-----C-ceeeeccccHHHHHHHHHH
Confidence            467899 88885   999999999999999999999999999999999999885     5 9999999999999999999


Q ss_pred             cCCCceeccHHHHHHHHH
Q 044763          201 LPYAQYRQCCFSINNKLM  218 (453)
Q Consensus       201 fP~a~h~~C~~Hi~~n~~  218 (453)
                      ||++.|++|.||+.+|++
T Consensus        76 fP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   76 FPDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCCceEehhHHHHHHhhC
Confidence            999999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.73  E-value=2.3e-17  Score=161.35  Aligned_cols=214  Identities=16%  Similarity=0.210  Sum_probs=165.2

Q ss_pred             cCCCCCHHHHHHHHHHHhCCcce---eeccc-cc-ceEEEEeccCCCCcceeEEEEecceeeeecccC-------CceeE
Q 044763           67 ENPNIDLDRLGYEIERCSGIKYP---TWKVE-AI-DKIAKFWLRTDHSYGYERLLHYKNEMLKIDSSY-------KSVML  134 (453)
Q Consensus        67 ~~~~~~~~~i~~~l~~~~g~~~s---~~rak-~~-gs~~~~~~~~~~~~~f~~~f~f~~pvi~l~~~y-------~~~ll  134 (453)
                      ...+++++++.+.+++.++..++   ..+.- .+ ..+..+...+-  ..|        |++++|++|       +.+++
T Consensus        97 y~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v~~~~~r~l--~~~--------~~v~~D~~~~k~r~v~~~~~~  166 (379)
T COG3328          97 YAKGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKVKAWQNRPL--GDY--------PYVYLDAKYVKVRSVRNKAVY  166 (379)
T ss_pred             HHcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHHHHHHhccc--cCc--------eEEEEecceeehhhhhhheee
Confidence            45689999999999999988776   11111 00 01111111111  122        778899988       46899


Q ss_pred             EEEEEcCCCCeEEEEEEeeeccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccHHHHH
Q 044763          135 VAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSIN  214 (453)
Q Consensus       135 ~a~g~d~~~~~~~la~a~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~  214 (453)
                      +|+|++.+|+..+||+.+.+.|+ ..|.-||..|+.+ |.     .....+++|+++|+.+||.++||.+.++.|..|+.
T Consensus       167 ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r-gl-----~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~  239 (379)
T COG3328         167 IAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR-GL-----SDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLV  239 (379)
T ss_pred             eeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc-cc-----cceeEEecchhhhhHHHHHHhccHhhhhhhhhHHH
Confidence            99999999999999999999999 9999999999998 44     67888889999999999999999999999999999


Q ss_pred             HHHHhhCCCh---hHHHHHHHHhhhhcHHHHHHHHH----HHHhcCHHHHHHHHhcccCcEEEeecCCCccccccccchH
Q 044763          215 NKLMEQFPHA---LVYSLFWSACRSTNKATFQQQMM----LLQYHNKNCYKWLIDRECRTWALYCMPEWAKSTDITISAT  287 (453)
Q Consensus       215 ~n~~~~~~~~---~~~~~~~~~~~~~~~~ef~~~~~----~l~~~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~  287 (453)
                      +|+..+.+.+   .....+..+..+.+.++....+.    .+....|....++.+...+.|...-|+...+--+.|||..
T Consensus       240 Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~I  319 (379)
T COG3328         240 RNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAI  319 (379)
T ss_pred             hhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHH
Confidence            9999998765   44445555555555555444444    4555678889999988888888888885666678899999


Q ss_pred             HHHHHHHHhc
Q 044763          288 EQLQIWLLKY  297 (453)
Q Consensus       288 Es~N~~lk~~  297 (453)
                      |++|+.++..
T Consensus       320 E~~n~~ir~~  329 (379)
T COG3328         320 ESLNKLIRRR  329 (379)
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=99.04  E-value=8.4e-11  Score=70.51  Aligned_cols=27  Identities=44%  Similarity=0.819  Sum_probs=25.1

Q ss_pred             CceeeCCeecCCCCcchhhHHHHHhhC
Q 044763          377 AICSCGLWQLSKIPCPHTCRCIIHWAA  403 (453)
Q Consensus       377 ~~CsC~~~~~~giPC~H~lavl~~~~~  403 (453)
                      .+|||++||..||||+|+|+|+...|+
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.44  E-value=1.4e-07  Score=62.12  Aligned_cols=40  Identities=28%  Similarity=0.546  Sum_probs=31.2

Q ss_pred             EEEEEeCeEEEEEccCCceeeCCeecCCCCcchhhHHHHHhh
Q 044763          361 LTITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWA  402 (453)
Q Consensus       361 f~V~~~~~~~~V~l~~~~CsC~~~~~~giPC~H~lavl~~~~  402 (453)
                      |+|.-++..  +++...+|||..|+..|.||+|++|++...+
T Consensus         1 y~V~i~~~~--~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen    1 YQVTIDDER--VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             CEEEEcCCc--ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            344443333  6677899999999999999999999998653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=98.34  E-value=6.7e-07  Score=66.20  Aligned_cols=34  Identities=24%  Similarity=0.581  Sum_probs=31.9

Q ss_pred             CCccceEEEEEeecCCCceEEEEEEeCCCceEEE
Q 044763            1 MENTCTLISCECSDLMCDWKVSAAKVRKGNVFVL   34 (453)
Q Consensus         1 ~ks~~~r~~~~C~~~~C~w~v~~~~~~~~~~~~i   34 (453)
                      .+|+++|++++|.+.||||+|+|++.++++.|+|
T Consensus        34 ~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen   34 KKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             eccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            3799999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=96.90  E-value=0.0012  Score=51.88  Aligned_cols=32  Identities=6%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             cCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763           14 DLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH   46 (453)
Q Consensus        14 ~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~   46 (453)
                      .+||||+|.+.+.+ .+.|.|..+..+|||++.
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            37999999999987 889999999999999874

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=96.72  E-value=0.002  Score=51.39  Aligned_cols=31  Identities=16%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             CCCceEEEEEEeCCCceEEEEeeCCCceecC
Q 044763           15 LMCDWKVSAAKVRKGNVFVLKEITPNHTCKR   45 (453)
Q Consensus        15 ~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~   45 (453)
                      .+|||+|+|..+...+.|.|..+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            5899999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.65  E-value=0.12  Score=53.36  Aligned_cols=133  Identities=19%  Similarity=0.224  Sum_probs=93.0

Q ss_pred             ccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccHHHHHHHHHhhCC-ChhHHHHHHHH
Q 044763          155 EENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFP-HALVYSLFWSA  233 (453)
Q Consensus       155 ~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~-~~~~~~~~~~~  233 (453)
                      ..+.+-|.-+.+.+-+....   ....-+++.+|+.+.+.++++ .+|++.|.+..+|+.+.+.+.++ .+.+.+.++++
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~---~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~a  310 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDL---DKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKA  310 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCc---ccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            45567899888888887764   112357889999999998876 99999999999999999999885 45677778888


Q ss_pred             hhhhcHHHHHHHHHHHHhc--CH-------HHHHHHHhcccCcEEEeecCCCccccccccchHHHHHHHHHh
Q 044763          234 CRSTNKATFQQQMMLLQYH--NK-------NCYKWLIDRECRTWALYCMPEWAKSTDITISATEQLQIWLLK  296 (453)
Q Consensus       234 ~~~~~~~ef~~~~~~l~~~--~~-------~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~N~~lk~  296 (453)
                      .......+++..++.+...  ++       +...||..++..-  ..|-   .+-+.......|+.+..+..
T Consensus       311 l~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i--~~y~---~~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  311 LKKGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI--KPYR---EREGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh--hhhh---hccCCCccchhhhhhhHHHH
Confidence            7777888888888877653  22       2344555432211  1111   11344456668888777643

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=94.81  E-value=0.089  Score=37.65  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=32.8

Q ss_pred             ceEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceec
Q 044763            5 CTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCK   44 (453)
Q Consensus         5 ~~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~   44 (453)
                      -.|--.+|+..+||++=.+.+..+++...++++.++|||.
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            4566699999999999999998878888999999999995

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.61  E-value=0.06  Score=50.68  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             EEEEEEcC--CCCeEEEEEEeeeccccccHHHHHHHH-HhhccccccCCCCCEEEEcCCCchHHHHHhhccCCCceeccH
Q 044763          134 LVAVCRDG--NNGVLPIAFCEVQEENLDLWSFFLKNL-YEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCC  210 (453)
Q Consensus       134 l~a~g~d~--~~~~~~la~a~~~~E~~~~w~wfl~~l-~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~  210 (453)
                      ++.+-+|.  +++..   ++++++-+.++..-||..+ -....      ....+|++|...+...|+++.||+|.+..-.
T Consensus        15 y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~~------~~v~~V~~Dm~~~y~~~~~~~~P~A~iv~Dr   85 (249)
T PF01610_consen   15 YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEER------KNVKVVSMDMSPPYRSAIREYFPNAQIVADR   85 (249)
T ss_pred             eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCccccc------cceEEEEcCCCcccccccccccccccccccc
Confidence            55555665  44332   3588888888888888876 43322      6789999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 044763          211 FSINNKLMEQF  221 (453)
Q Consensus       211 ~Hi~~n~~~~~  221 (453)
                      ||+++++.+.+
T Consensus        86 FHvvk~~~~al   96 (249)
T PF01610_consen   86 FHVVKLANRAL   96 (249)
T ss_pred             chhhhhhhhcc
Confidence            99999988755

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=93.25  E-value=0.034  Score=47.49  Aligned_cols=65  Identities=18%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             eeEEEEEEcCCCCeEEEEEEeeeccccccHHHHHHHHHhhccccccCCCCCEEEEcCCCchHHHHHhhccCCC
Q 044763          132 VMLVAVCRDGNNGVLPIAFCEVQEENLDLWSFFLKNLYEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYA  204 (453)
Q Consensus       132 ~ll~a~g~d~~~~~~~la~a~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a  204 (453)
                      ..+..-.+|.+|+  +|++-+-+.-+...=..||+.+.+..+      ..|..|+||+.++...|+++++|+.
T Consensus        17 ~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~------~~p~~ivtDk~~aY~~A~~~l~~~~   81 (140)
T PF13610_consen   17 WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR------GEPRVIVTDKLPAYPAAIKELNPEG   81 (140)
T ss_pred             EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec------cccceeecccCCccchhhhhccccc
Confidence            4567788999999  899999999999999999999888864      4799999999999999999999974

>smart00774 WRKY DNA binding domain

Probab=91.37  E-value=0.31  Score=34.62  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=31.3

Q ss_pred             eEEEEEeec-CCCceEEEEEEeCCCceEEEEeeCCCcee
Q 044763            6 TLISCECSD-LMCDWKVSAAKVRKGNVFVLKEITPNHTC   43 (453)
Q Consensus         6 ~r~~~~C~~-~~C~w~v~~~~~~~~~~~~i~~~~~~H~c   43 (453)
                      .|--.+|+. .|||++=.+.+..+++.-.+.++.++|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            455689998 79999888888776667778889999997

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 72/527 (13%), Positives = 141/527 (26%), Gaps = 171/527 (32%)

Query: 7   LISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKR-----HNNNFALGTMWNAVNF 61
           L   E   ++       A      +F           ++        N+    + +    
Sbjct: 46  LSKEEIDHII---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSP--- 97

Query: 62  LHLWVENPNIDLDRLGYEIERCSG-----IKYPTWKVEAIDKIAKFWLRTDHSYGYERLL 116
           +      P++       + +R         KY   +++   K+ +  L          L+
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKN-VLI 155

Query: 117 HYKNEMLKIDSSYKSVMLVAVCRDG------NNGV--LPIAFCEVQEENLDLWSFFLKNL 168
                +L    S K+ + + VC         +  +  L +  C   E  L++    L+ L
Sbjct: 156 D---GVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKL 205

Query: 169 YEGLHMDYMDYGKGICIMCDKDNGVDEAASEFLPYAQYRQCCFSINNKLMEQFPHALVYS 228
              +  ++         +  + + +       L    Y  C   + N          V +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----------VQN 255

Query: 229 L-FWSA----CR----STNKATFQQQMMLLQYHNKNCYKWLIDRECRTWALYCMPEWAKS 279
              W+A    C+    +  K            H        I  +  +  L         
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--------ISLDHHSMTL--------- 298

Query: 280 TDITISATEQLQIWLLKYLDMNVANRFTAITKETAKI----------FQKRYLVGWD-WV 328
              T    + L   LLKYLD     R   + +E                +  L  WD W 
Sbjct: 299 ---TPDEVKSL---LLKYLDC----RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 329 H--------------DNITPTARQQ-------------ITQNVIEDDGWNTHSGADPKIL 361
           H              + + P   ++             I   ++    W     +D  ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVV 407

Query: 362 TITMNGLSFVVNKELAICSCGLWQLSKIPCPHTCRCIIHWAALYADF---------VHDF 412
              +N L       L         + K P   T    I   ++Y +          +H  
Sbjct: 408 ---VNKL---HKYSL---------VEKQPKESTIS--IP--SIYLELKVKLENEYALHRS 448

Query: 413 MTVEVYRSTYGPGMKELPQIYKWMPQLIDIVQPPLK------IATHL 453
           + V+ Y          +P+ +       D++ P L       I  HL
Sbjct: 449 I-VDHYN---------IPKTFDSD----DLIPPYLDQYFYSHIGHHL 481

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	94.42
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	94.27

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=94.42  E-value=0.081  Score=38.55  Aligned_cols=41  Identities=12%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763            6 TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH   46 (453)
Q Consensus         6 ~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~   46 (453)
                      .|--.+|+..|||++=.+.+..++....+.++.++|||..+
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            45558999999999999999877777888999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=94.27  E-value=0.11  Score=38.04  Aligned_cols=41  Identities=10%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             eEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763            6 TLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH   46 (453)
Q Consensus         6 ~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~   46 (453)
                      .|--.+|+..||+++=.+.+..++....+.++.++|||..+
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            45568999999999999999877777888899999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	95.83

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.83  E-value=0.01  Score=40.85  Aligned_cols=42  Identities=10%  Similarity=0.121  Sum_probs=36.1

Q ss_pred             ceEEEEEeecCCCceEEEEEEeCCCceEEEEeeCCCceecCC
Q 044763            5 CTLISCECSDLMCDWKVSAAKVRKGNVFVLKEITPNHTCKRH   46 (453)
Q Consensus         5 ~~r~~~~C~~~~C~w~v~~~~~~~~~~~~i~~~~~~H~c~~~   46 (453)
                      ..|--++|+..||+++=.+.+..+++.-.+.++.++|||..+
T Consensus        29 ~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          29 YPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             SCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            346679999999999999999887777888889999999764